Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0962870 | XP_013442679.1 | 97.305 | 334 | 9 | 0 | 1 | 334 | 3 | 336 | 0.0 | 655 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0962870 | sp|Q9SUC9|UGPI7_ARATH | 42.007 | 269 | 134 | 8 | 36 | 300 | 26 | 276 | 8.04e-64 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0962870 | Msa1306540 | 0.811544 | 6.638299e-51 | -8.615850e-47 |
| Msa0962870 | Msa1375400 | 0.809772 | 1.604332e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0962870 | MtrunA17_Chr6g0482961 | 97.305 | 334 | 9 | 0 | 1 | 334 | 3 | 336 | 0.0 | 655 |
| Msa0962870 | MtrunA17_Chr8g0392751 | 61.850 | 346 | 109 | 9 | 1 | 334 | 1 | 335 | 2.54e-136 | 390 |
| Msa0962870 | MtrunA17_Chr4g0022791 | 40.193 | 311 | 155 | 12 | 26 | 322 | 20 | 313 | 1.90e-68 | 216 |
| Msa0962870 | MtrunA17_Chr2g0323391 | 42.701 | 274 | 124 | 8 | 45 | 306 | 25 | 277 | 8.10e-64 | 204 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0962870 | AT3G18050.1 | 57.785 | 289 | 101 | 6 | 45 | 319 | 42 | 323 | 5.32e-105 | 311 |
| Msa0962870 | AT4G28100.1 | 42.007 | 269 | 134 | 8 | 36 | 300 | 26 | 276 | 8.17e-65 | 207 |
Find 84 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTAATGTTGTTGGGAAAA+TGG | 0.205495 | 6_3:-86613678 | None:intergenic |
| CTTTAACATAAGATTGTTCT+TGG | 0.214285 | 6_3:-86613712 | None:intergenic |
| CAAGAACAATCTTATGTTAA+AGG | 0.223232 | 6_3:+86613713 | Msa0962870:CDS |
| TTGTTGGGAAAATGGGATTA+AGG | 0.244672 | 6_3:-86613670 | None:intergenic |
| GTGCTTGAATAGTCTCTATT+TGG | 0.254239 | 6_3:+86614210 | Msa0962870:CDS |
| TTTGTTATTGTTACTTTGTT+TGG | 0.259799 | 6_3:+86616001 | Msa0962870:CDS |
| CAACAAAGATTGTGAGCTAA+TGG | 0.271739 | 6_3:+86615776 | Msa0962870:CDS |
| TGTATTGTTATTGTGGAATT+AGG | 0.287095 | 6_3:+86614041 | Msa0962870:CDS |
| AGAGTCCAAGTTATATATAT+TGG | 0.292253 | 6_3:-86613475 | None:intergenic |
| AATGCATCAGGACAGTTAAA+AGG | 0.327802 | 6_3:-86614070 | None:intergenic |
| AGACAAAGTTGGTTGGAGTT+TGG | 0.338347 | 6_3:-86615973 | None:intergenic |
| ATCTTTGTTGTGAATCTTTG+TGG | 0.352616 | 6_3:-86615763 | None:intergenic |
| AAGAACAATCTTATGTTAAA+GGG | 0.360626 | 6_3:+86613714 | Msa0962870:CDS |
| GTTAATGTTGTTGGGAAAAT+GGG | 0.361945 | 6_3:-86613677 | None:intergenic |
| GGTAATGGATTTCAAGGTCT+TGG | 0.363694 | 6_3:+86614175 | Msa0962870:CDS |
| TGTTGGGAAAATGGGATTAA+GGG | 0.381048 | 6_3:-86613669 | None:intergenic |
| TTAGTAATTGAGATAGTGTA+TGG | 0.392798 | 6_3:+86616153 | Msa0962870:three_prime_UTR |
| ATCATCATTTGACATGCCTT+TGG | 0.401272 | 6_3:+86613922 | Msa0962870:CDS |
| AGAAGAGAATGTAGAGGAAA+AGG | 0.401985 | 6_3:-86613601 | None:intergenic |
| ACCAAATCACAACTCTCATT+TGG | 0.403979 | 6_3:-86614019 | None:intergenic |
| AGGAAAAGGATCATTTGATA+TGG | 0.413812 | 6_3:-86613587 | None:intergenic |
| AGGGTTGATGATGTTGAGTT+AGG | 0.414598 | 6_3:-86613650 | None:intergenic |
| GAAGGGATTGTTAATGTTGT+TGG | 0.415245 | 6_3:-86613686 | None:intergenic |
| AACAAAGATTGTGAGCTAAT+GGG | 0.418766 | 6_3:+86615777 | Msa0962870:CDS |
| GAGTCCAAGTTATATATATT+GGG | 0.428960 | 6_3:-86613474 | None:intergenic |
| TAAGATTGTTCTTGGAATGA+AGG | 0.431330 | 6_3:-86613704 | None:intergenic |
| AGAAACATGTGTGGATGGTT+TGG | 0.434390 | 6_3:+86613958 | Msa0962870:CDS |
| AAGGGATTGTTAATGTTGTT+GGG | 0.448059 | 6_3:-86613685 | None:intergenic |
| GCCAAATGAGAGTTGTGATT+TGG | 0.449384 | 6_3:+86614018 | Msa0962870:CDS |
| TTTGTAACAGAAAATGCATC+AGG | 0.450155 | 6_3:-86614082 | None:intergenic |
| GATTTGGTGTATTGTTATTG+TGG | 0.453227 | 6_3:+86614034 | Msa0962870:CDS |
| CCTACCCAATATATATAACT+TGG | 0.454411 | 6_3:+86613470 | Msa0962870:five_prime_UTR |
| TGGAGAAGAATTGCTTGAGT+AGG | 0.462891 | 6_3:+86614143 | Msa0962870:CDS |
| TCATACTCCTCCACTGCCCT+TGG | 0.468218 | 6_3:+86613866 | Msa0962870:CDS |
| TATAACCATGCTGCAAGAAC+AGG | 0.468658 | 6_3:-86613839 | None:intergenic |
| GCTTTGTTGTTGAACAAAGA+TGG | 0.470689 | 6_3:+86615864 | Msa0962870:CDS |
| AGTGGAGAACTTGTTGGAGA+TGG | 0.493754 | 6_3:+86614106 | Msa0962870:CDS |
| CTCTCAAATGAACTCTTCAA+TGG | 0.501668 | 6_3:+86613749 | Msa0962870:CDS |
| AAGATTGTTCTTGGAATGAA+GGG | 0.502562 | 6_3:-86613703 | None:intergenic |
| TCAGATGAATCAACAGCTAA+AGG | 0.503505 | 6_3:-86615927 | None:intergenic |
| ACACATGTTTCTGAGTCATC+TGG | 0.507508 | 6_3:-86613947 | None:intergenic |
| CATGGCTTCTATCGAAGAAT+CGG | 0.511354 | 6_3:+86615805 | Msa0962870:CDS |
| AGATGGAAGTGTGAGGAGGT+TGG | 0.516360 | 6_3:+86614123 | Msa0962870:CDS |
| GAAAAGGCTTTGAAAGTGAG+AGG | 0.517885 | 6_3:+86613980 | Msa0962870:CDS |
| AAGGTCTAAGATGATGAGAA+TGG | 0.519208 | 6_3:-86613533 | None:intergenic |
| TATATATTGGGTAGGAACAA+AGG | 0.522827 | 6_3:-86613462 | None:intergenic |
| ATGTGTGGATGGTTTGGAAA+AGG | 0.525959 | 6_3:+86613964 | Msa0962870:CDS |
| GCATTCCTAAGCACCAAAAG+AGG | 0.528548 | 6_3:-86616118 | None:intergenic |
| AGGATCATTTGATATGGAAG+TGG | 0.532978 | 6_3:-86613581 | None:intergenic |
| ACGACGATGACGATGATGAA+TGG | 0.533881 | 6_3:-86613892 | None:intergenic |
| TAATGACATGATGGTGTTGA+AGG | 0.536118 | 6_3:-86613552 | None:intergenic |
| AGTTCATTTGAGAGAGACAA+AGG | 0.539445 | 6_3:-86613740 | None:intergenic |
| ATTCAAGCAAAGAAGAAGAC+AGG | 0.542446 | 6_3:+86615739 | Msa0962870:CDS |
| TCTGAGTCATCTGGCACCAA+AGG | 0.543535 | 6_3:-86613938 | None:intergenic |
| CTATTTAGAGTGCATGATTG+TGG | 0.557315 | 6_3:-86615894 | None:intergenic |
| AATGGATTTCAAGGTCTTGG+AGG | 0.558012 | 6_3:+86614178 | Msa0962870:CDS |
| AACAAAGAAAGAGACAAAGT+TGG | 0.560500 | 6_3:-86615984 | None:intergenic |
| TCTAAGATGATGAGAATGGA+AGG | 0.563005 | 6_3:-86613529 | None:intergenic |
| AAGAAAGAGACAAAGTTGGT+TGG | 0.568482 | 6_3:-86615980 | None:intergenic |
| TTGTTCTGATTTGAGTCATG+AGG | 0.569587 | 6_3:-86616051 | None:intergenic |
| ACGATGATGAATGGTTTCCA+AGG | 0.572831 | 6_3:-86613883 | None:intergenic |
| TCATGCACTCTAAATAGTGA+TGG | 0.573743 | 6_3:+86615900 | Msa0962870:CDS |
| TGAGTGAGACTCATGTAGGA+AGG | 0.575617 | 6_3:-86613626 | None:intergenic |
| CATTCCTAAGCACCAAAAGA+GGG | 0.578965 | 6_3:-86616117 | None:intergenic |
| GAACAGGACAACATCGGCTA+CGG | 0.579954 | 6_3:-86613823 | None:intergenic |
| TGAATGGTTTCCAAGGGCAG+TGG | 0.585630 | 6_3:-86613876 | None:intergenic |
| AAGGGAAGAAGAGAATGTAG+AGG | 0.587484 | 6_3:-86613607 | None:intergenic |
| AGGATGAGTGAGACTCATGT+AGG | 0.588608 | 6_3:-86613630 | None:intergenic |
| ATGGTTTCCAAGGGCAGTGG+AGG | 0.590723 | 6_3:-86613873 | None:intergenic |
| GTTGTCCTGTTCTTGCAGCA+TGG | 0.598312 | 6_3:+86613834 | Msa0962870:CDS |
| CCAAGTTATATATATTGGGT+AGG | 0.605312 | 6_3:-86613470 | None:intergenic |
| GAGTGAGACTCATGTAGGAA+GGG | 0.607216 | 6_3:-86613625 | None:intergenic |
| TGGAAGTGATAATGACATGA+TGG | 0.609451 | 6_3:-86613561 | None:intergenic |
| CGATGATGAATGGTTTCCAA+GGG | 0.625827 | 6_3:-86613882 | None:intergenic |
| GTGAGCTAATGGGTTTGACA+TGG | 0.629421 | 6_3:+86615787 | Msa0962870:CDS |
| GACTCAGAAACATGTGTGGA+TGG | 0.634993 | 6_3:+86613953 | Msa0962870:CDS |
| TTGGAGATGGAAGTGTGAGG+AGG | 0.637019 | 6_3:+86614119 | Msa0962870:CDS |
| TAGTAATTGAGATAGTGTAT+GGG | 0.652554 | 6_3:+86616154 | Msa0962870:three_prime_UTR |
| CTGCAAGAACAGGACAACAT+CGG | 0.659169 | 6_3:-86613829 | None:intergenic |
| GCATGTAGTTCATCAAAACA+TGG | 0.668065 | 6_3:+86613782 | Msa0962870:CDS |
| GCTTCTATCGAAGAATCGGA+CGG | 0.675250 | 6_3:+86615809 | Msa0962870:CDS |
| AGATGACTCAGAAACATGTG+TGG | 0.717542 | 6_3:+86613949 | Msa0962870:CDS |
| TCGGACGGCTTATATTCACA+CGG | 0.759268 | 6_3:+86615824 | Msa0962870:CDS |
| TTGTTGGAGATGGAAGTGTG+AGG | 0.765971 | 6_3:+86614116 | Msa0962870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTATAATTTTTGTAGA+AGG | - | chr6_3:86614244-86614263 | None:intergenic | 10.0% |
| !! | AATAAGATTAAAACAACTTA+TGG | - | chr6_3:86614574-86614593 | None:intergenic | 15.0% |
| !! | GTTTATAGTTTATATGAAAA+CGG | + | chr6_3:86614627-86614646 | Msa0962870:intron | 15.0% |
| !!! | AAATCTTGTTTTACAAATAT+AGG | - | chr6_3:86615078-86615097 | None:intergenic | 15.0% |
| !! | TTTGTAAAACAAGATTTATT+TGG | + | chr6_3:86615081-86615100 | Msa0962870:intron | 15.0% |
| !! | TAAGAAACATATTTATGATT+GGG | - | chr6_3:86615182-86615201 | None:intergenic | 15.0% |
| !! | TTAAGAAACATATTTATGAT+TGG | - | chr6_3:86615183-86615202 | None:intergenic | 15.0% |
| !!! | CAATTGTTTATCTATTTTAT+TGG | - | chr6_3:86615322-86615341 | None:intergenic | 15.0% |
| !! | CAATAAAATAGATAAACAAT+TGG | + | chr6_3:86615320-86615339 | Msa0962870:intron | 15.0% |
| !!! | TTTTTTTTTTCAAATGTAAG+TGG | + | chr6_3:86615366-86615385 | Msa0962870:intron | 15.0% |
| !!! | TTTTTAAGTAACAAACATTT+TGG | - | chr6_3:86615606-86615625 | None:intergenic | 15.0% |
| !!! | TTTAGAATATTAAACAAAAG+TGG | - | chr6_3:86615677-86615696 | None:intergenic | 15.0% |
| !! | AAGAACAATCTTATGTTAAA+GGG | + | chr6_3:86613714-86613733 | Msa0962870:CDS | 20.0% |
| !!! | TTTTTTATATTTCATTCCAG+AGG | - | chr6_3:86614381-86614400 | None:intergenic | 20.0% |
| !! | GAAAGAAATATAAGCAAAAA+TGG | - | chr6_3:86614450-86614469 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTATATTTCTTTC+CGG | + | chr6_3:86614450-86614469 | Msa0962870:intron | 20.0% |
| !!! | GTTTTAATCTTATTTCCATA+AGG | + | chr6_3:86614580-86614599 | Msa0962870:intron | 20.0% |
| !!! | CTTAATTTCTAGAAACATTA+AGG | - | chr6_3:86614864-86614883 | None:intergenic | 20.0% |
| !! | GATATATGACTCAAAAAAAA+TGG | + | chr6_3:86615051-86615070 | Msa0962870:intron | 20.0% |
| !! | AATATTAAACCTAGTCAATT+TGG | + | chr6_3:86615135-86615154 | Msa0962870:intron | 20.0% |
| !! | AAGAAACATATTTATGATTG+GGG | - | chr6_3:86615181-86615200 | None:intergenic | 20.0% |
| !!! | AAAACTTATTTCTTAATGCA+AGG | + | chr6_3:86615241-86615260 | Msa0962870:intron | 20.0% |
| !!! | TTTATCTATTTTATTGGTTG+AGG | - | chr6_3:86615316-86615335 | None:intergenic | 20.0% |
| !!! | TTTGTTATTGTTACTTTGTT+TGG | + | chr6_3:86616001-86616020 | Msa0962870:CDS | 20.0% |
| ! | GAGTCCAAGTTATATATATT+GGG | - | chr6_3:86613477-86613496 | None:intergenic | 25.0% |
| ! | AGAGTCCAAGTTATATATAT+TGG | - | chr6_3:86613478-86613497 | None:intergenic | 25.0% |
| ! | CTTTAACATAAGATTGTTCT+TGG | - | chr6_3:86613715-86613734 | None:intergenic | 25.0% |
| ! | CAAGAACAATCTTATGTTAA+AGG | + | chr6_3:86613713-86613732 | Msa0962870:CDS | 25.0% |
| !! | TGTATTGTTATTGTGGAATT+AGG | + | chr6_3:86614041-86614060 | Msa0962870:CDS | 25.0% |
| !!! | AAAAATGGTAATGGATTTCA+AGG | + | chr6_3:86614169-86614188 | Msa0962870:CDS | 25.0% |
| !!! | CTATCTATGATATGTTTTGA+TGG | + | chr6_3:86614269-86614288 | Msa0962870:intron | 25.0% |
| ! | TGTTGAAAATTGATGAAGAT+TGG | + | chr6_3:86614296-86614315 | Msa0962870:intron | 25.0% |
| ! | ATCCAAACATTAAAGTATGA+TGG | + | chr6_3:86614744-86614763 | Msa0962870:intron | 25.0% |
| ! | AACCATCATACTTTAATGTT+TGG | - | chr6_3:86614749-86614768 | None:intergenic | 25.0% |
| ! | TTGGTTGCAAAATAATTTCA+AGG | + | chr6_3:86615010-86615029 | Msa0962870:intron | 25.0% |
| !! | AGATTTTATAATCCCTCTTT+TGG | + | chr6_3:86616105-86616124 | Msa0962870:three_prime_UTR | 25.0% |
| ! | TTAGTAATTGAGATAGTGTA+TGG | + | chr6_3:86616153-86616172 | Msa0962870:three_prime_UTR | 25.0% |
| TATATATTGGGTAGGAACAA+AGG | - | chr6_3:86613465-86613484 | None:intergenic | 30.0% | |
| CCAAGTTATATATATTGGGT+AGG | - | chr6_3:86613473-86613492 | None:intergenic | 30.0% | |
| CCTACCCAATATATATAACT+TGG | + | chr6_3:86613470-86613489 | Msa0962870:five_prime_UTR | 30.0% | |
| AGGAAAAGGATCATTTGATA+TGG | - | chr6_3:86613590-86613609 | None:intergenic | 30.0% | |
| GTTAATGTTGTTGGGAAAAT+GGG | - | chr6_3:86613680-86613699 | None:intergenic | 30.0% | |
| TGTTAATGTTGTTGGGAAAA+TGG | - | chr6_3:86613681-86613700 | None:intergenic | 30.0% | |
| AAGGGATTGTTAATGTTGTT+GGG | - | chr6_3:86613688-86613707 | None:intergenic | 30.0% | |
| AAGATTGTTCTTGGAATGAA+GGG | - | chr6_3:86613706-86613725 | None:intergenic | 30.0% | |
| TAAGATTGTTCTTGGAATGA+AGG | - | chr6_3:86613707-86613726 | None:intergenic | 30.0% | |
| !! | GATTTGGTGTATTGTTATTG+TGG | + | chr6_3:86614034-86614053 | Msa0962870:CDS | 30.0% |
| TTTGTAACAGAAAATGCATC+AGG | - | chr6_3:86614085-86614104 | None:intergenic | 30.0% | |
| ! | GCATTTTCTGTTACAAAAAG+TGG | + | chr6_3:86614088-86614107 | Msa0962870:CDS | 30.0% |
| AGTAGGAAGAAAAATGGTAA+TGG | + | chr6_3:86614160-86614179 | Msa0962870:CDS | 30.0% | |
| !!! | GAAGTGTTTTTTCAATGCTT+TGG | + | chr6_3:86614776-86614795 | Msa0962870:intron | 30.0% |
| TGGTACAACAGAATAACTTT+AGG | + | chr6_3:86614904-86614923 | Msa0962870:intron | 30.0% | |
| GGTACAACAGAATAACTTTA+GGG | + | chr6_3:86614905-86614924 | Msa0962870:intron | 30.0% | |
| ACCAAAGTTATCAAAAGAGA+GGG | - | chr6_3:86614995-86615014 | None:intergenic | 30.0% | |
| AACCAAAGTTATCAAAAGAG+AGG | - | chr6_3:86614996-86615015 | None:intergenic | 30.0% | |
| GTTAATTTATTAGAGCGAGA+CGG | + | chr6_3:86615388-86615407 | Msa0962870:intron | 30.0% | |
| TGTATTCAGAAGAAGGTTTA+GGG | - | chr6_3:86615438-86615457 | None:intergenic | 30.0% | |
| CACACACTTAAACTTTGATT+AGG | + | chr6_3:86615512-86615531 | Msa0962870:intron | 30.0% | |
| ATCTTCAAAACTCTACTTCA+AGG | - | chr6_3:86615557-86615576 | None:intergenic | 30.0% | |
| GAATGATGATAGCATAAAAG+TGG | - | chr6_3:86615644-86615663 | None:intergenic | 30.0% | |
| ! | ATCTTTGTTGTGAATCTTTG+TGG | - | chr6_3:86615766-86615785 | None:intergenic | 30.0% |
| AACAAAGATTGTGAGCTAAT+GGG | + | chr6_3:86615777-86615796 | Msa0962870:CDS | 30.0% | |
| AACAAAGAAAGAGACAAAGT+TGG | - | chr6_3:86615987-86616006 | None:intergenic | 30.0% | |
| ! | TCTAAGATGATGAGAATGGA+AGG | - | chr6_3:86613532-86613551 | None:intergenic | 35.0% |
| ! | AAGGTCTAAGATGATGAGAA+TGG | - | chr6_3:86613536-86613555 | None:intergenic | 35.0% |
| ! | TAATGACATGATGGTGTTGA+AGG | - | chr6_3:86613555-86613574 | None:intergenic | 35.0% |
| ! | TGGAAGTGATAATGACATGA+TGG | - | chr6_3:86613564-86613583 | None:intergenic | 35.0% |
| AGGATCATTTGATATGGAAG+TGG | - | chr6_3:86613584-86613603 | None:intergenic | 35.0% | |
| AGAAGAGAATGTAGAGGAAA+AGG | - | chr6_3:86613604-86613623 | None:intergenic | 35.0% | |
| TGTTGGGAAAATGGGATTAA+GGG | - | chr6_3:86613672-86613691 | None:intergenic | 35.0% | |
| TTGTTGGGAAAATGGGATTA+AGG | - | chr6_3:86613673-86613692 | None:intergenic | 35.0% | |
| GAAGGGATTGTTAATGTTGT+TGG | - | chr6_3:86613689-86613708 | None:intergenic | 35.0% | |
| AGTTCATTTGAGAGAGACAA+AGG | - | chr6_3:86613743-86613762 | None:intergenic | 35.0% | |
| CTCTCAAATGAACTCTTCAA+TGG | + | chr6_3:86613749-86613768 | Msa0962870:CDS | 35.0% | |
| GCATGTAGTTCATCAAAACA+TGG | + | chr6_3:86613782-86613801 | Msa0962870:CDS | 35.0% | |
| ATCATCATTTGACATGCCTT+TGG | + | chr6_3:86613922-86613941 | Msa0962870:CDS | 35.0% | |
| ACCAAATCACAACTCTCATT+TGG | - | chr6_3:86614022-86614041 | None:intergenic | 35.0% | |
| AATGCATCAGGACAGTTAAA+AGG | - | chr6_3:86614073-86614092 | None:intergenic | 35.0% | |
| ACAAAAAGTGGAGAACTTGT+TGG | + | chr6_3:86614100-86614119 | Msa0962870:CDS | 35.0% | |
| TGCTTGAGTAGGAAGAAAAA+TGG | + | chr6_3:86614154-86614173 | Msa0962870:CDS | 35.0% | |
| GTGCTTGAATAGTCTCTATT+TGG | + | chr6_3:86614210-86614229 | Msa0962870:CDS | 35.0% | |
| ! | TTTCATTCCAGAGGAGTATA+TGG | - | chr6_3:86614372-86614391 | None:intergenic | 35.0% |
| ! | AGCTTGTTTGTGAGAGTTTA+TGG | + | chr6_3:86614530-86614549 | Msa0962870:intron | 35.0% |
| !!! | GTGTTTTTTCAATGCTTTGG+AGG | + | chr6_3:86614779-86614798 | Msa0962870:intron | 35.0% |
| TAGGGTCTGTAGTTTAGATA+TGG | + | chr6_3:86614923-86614942 | Msa0962870:intron | 35.0% | |
| !! | ACCCTCTCTTTTGATAACTT+TGG | + | chr6_3:86614991-86615010 | Msa0962870:intron | 35.0% |
| GTGTATTCAGAAGAAGGTTT+AGG | - | chr6_3:86615439-86615458 | None:intergenic | 35.0% | |
| ATTCAAGCAAAGAAGAAGAC+AGG | + | chr6_3:86615739-86615758 | Msa0962870:CDS | 35.0% | |
| CAACAAAGATTGTGAGCTAA+TGG | + | chr6_3:86615776-86615795 | Msa0962870:CDS | 35.0% | |
| !! | GCTTTGTTGTTGAACAAAGA+TGG | + | chr6_3:86615864-86615883 | Msa0962870:CDS | 35.0% |
| ! | CTATTTAGAGTGCATGATTG+TGG | - | chr6_3:86615897-86615916 | None:intergenic | 35.0% |
| TCATGCACTCTAAATAGTGA+TGG | + | chr6_3:86615900-86615919 | Msa0962870:CDS | 35.0% | |
| TCAGATGAATCAACAGCTAA+AGG | - | chr6_3:86615930-86615949 | None:intergenic | 35.0% | |
| ! | AAGAAAGAGACAAAGTTGGT+TGG | - | chr6_3:86615983-86616002 | None:intergenic | 35.0% |
| ! | TTGTTCTGATTTGAGTCATG+AGG | - | chr6_3:86616054-86616073 | None:intergenic | 35.0% |
| AAGGGAAGAAGAGAATGTAG+AGG | - | chr6_3:86613610-86613629 | None:intergenic | 40.0% | |
| !! | AGGGTTGATGATGTTGAGTT+AGG | - | chr6_3:86613653-86613672 | None:intergenic | 40.0% |
| TATAACCATGCTGCAAGAAC+AGG | - | chr6_3:86613842-86613861 | None:intergenic | 40.0% | |
| CGATGATGAATGGTTTCCAA+GGG | - | chr6_3:86613885-86613904 | None:intergenic | 40.0% | |
| ACGATGATGAATGGTTTCCA+AGG | - | chr6_3:86613886-86613905 | None:intergenic | 40.0% | |
| ! | ACACATGTTTCTGAGTCATC+TGG | - | chr6_3:86613950-86613969 | None:intergenic | 40.0% |
| AGATGACTCAGAAACATGTG+TGG | + | chr6_3:86613949-86613968 | Msa0962870:CDS | 40.0% | |
| AGAAACATGTGTGGATGGTT+TGG | + | chr6_3:86613958-86613977 | Msa0962870:CDS | 40.0% | |
| ! | ATGTGTGGATGGTTTGGAAA+AGG | + | chr6_3:86613964-86613983 | Msa0962870:CDS | 40.0% |
| !! | GAAAAGGCTTTGAAAGTGAG+AGG | + | chr6_3:86613980-86613999 | Msa0962870:CDS | 40.0% |
| GCCAAATGAGAGTTGTGATT+TGG | + | chr6_3:86614018-86614037 | Msa0962870:CDS | 40.0% | |
| TGGAGAAGAATTGCTTGAGT+AGG | + | chr6_3:86614143-86614162 | Msa0962870:CDS | 40.0% | |
| !! | GGTAATGGATTTCAAGGTCT+TGG | + | chr6_3:86614175-86614194 | Msa0962870:CDS | 40.0% |
| ! | AATGGATTTCAAGGTCTTGG+AGG | + | chr6_3:86614178-86614197 | Msa0962870:CDS | 40.0% |
| GATGAAGATTGGACTCTGTT+TGG | + | chr6_3:86614307-86614326 | Msa0962870:intron | 40.0% | |
| GTACTTACCATATACTCCTC+TGG | + | chr6_3:86614362-86614381 | Msa0962870:intron | 40.0% | |
| TTTCCGGAGTAAGTGTTTCA+TGG | + | chr6_3:86614466-86614485 | Msa0962870:intron | 40.0% | |
| TTCCGGAGTAAGTGTTTCAT+GGG | + | chr6_3:86614467-86614486 | Msa0962870:intron | 40.0% | |
| AAGCTATGCTAGAGACCTTA+TGG | - | chr6_3:86614598-86614617 | None:intergenic | 40.0% | |
| GTGTGTAGTTCATAGACTAC+TGG | + | chr6_3:86614801-86614820 | Msa0962870:intron | 40.0% | |
| CACATGCAATGTCACTATCT+TGG | + | chr6_3:86614884-86614903 | Msa0962870:intron | 40.0% | |
| GAAGAACAGCCAAATTGACT+AGG | - | chr6_3:86615147-86615166 | None:intergenic | 40.0% | |
| ! | ACGAAGGTGTATTCAGAAGA+AGG | - | chr6_3:86615445-86615464 | None:intergenic | 40.0% |
| AAGGTGTAGCCTGCTAATAT+GGG | - | chr6_3:86615476-86615495 | None:intergenic | 40.0% | |
| ATATTAGCAGGCTACACCTT+CGG | + | chr6_3:86615476-86615495 | Msa0962870:intron | 40.0% | |
| CATGGCTTCTATCGAAGAAT+CGG | + | chr6_3:86615805-86615824 | Msa0962870:CDS | 40.0% | |
| ! | AGACAAAGTTGGTTGGAGTT+TGG | - | chr6_3:86615976-86615995 | None:intergenic | 40.0% |
| !!! | TAATCCCTCTTTTGGTGCTT+AGG | + | chr6_3:86616113-86616132 | Msa0962870:three_prime_UTR | 40.0% |
| CATTCCTAAGCACCAAAAGA+GGG | - | chr6_3:86616120-86616139 | None:intergenic | 40.0% | |
| GAGTGAGACTCATGTAGGAA+GGG | - | chr6_3:86613628-86613647 | None:intergenic | 45.0% | |
| TGAGTGAGACTCATGTAGGA+AGG | - | chr6_3:86613629-86613648 | None:intergenic | 45.0% | |
| AGGATGAGTGAGACTCATGT+AGG | - | chr6_3:86613633-86613652 | None:intergenic | 45.0% | |
| CTGCAAGAACAGGACAACAT+CGG | - | chr6_3:86613832-86613851 | None:intergenic | 45.0% | |
| ACGACGATGACGATGATGAA+TGG | - | chr6_3:86613895-86613914 | None:intergenic | 45.0% | |
| GACTCAGAAACATGTGTGGA+TGG | + | chr6_3:86613953-86613972 | Msa0962870:CDS | 45.0% | |
| !! | AGTGGAGAACTTGTTGGAGA+TGG | + | chr6_3:86614106-86614125 | Msa0962870:CDS | 45.0% |
| ! | TTGTTGGAGATGGAAGTGTG+AGG | + | chr6_3:86614116-86614135 | Msa0962870:CDS | 45.0% |
| AGCCCATGAAACACTTACTC+CGG | - | chr6_3:86614472-86614491 | None:intergenic | 45.0% | |
| GTAGCCTGCTAATATGGGTT+GGG | - | chr6_3:86615471-86615490 | None:intergenic | 45.0% | |
| TGTAGCCTGCTAATATGGGT+TGG | - | chr6_3:86615472-86615491 | None:intergenic | 45.0% | |
| ! | GAAGGTGTAGCCTGCTAATA+TGG | - | chr6_3:86615477-86615496 | None:intergenic | 45.0% |
| GTGACAAAATGTGTGTCCGA+AGG | - | chr6_3:86615495-86615514 | None:intergenic | 45.0% | |
| !! | GTGAGCTAATGGGTTTGACA+TGG | + | chr6_3:86615787-86615806 | Msa0962870:CDS | 45.0% |
| GCTTCTATCGAAGAATCGGA+CGG | + | chr6_3:86615809-86615828 | Msa0962870:CDS | 45.0% | |
| TCGGACGGCTTATATTCACA+CGG | + | chr6_3:86615824-86615843 | Msa0962870:CDS | 45.0% | |
| GCATTCCTAAGCACCAAAAG+AGG | - | chr6_3:86616121-86616140 | None:intergenic | 45.0% | |
| !! | AATGAAATATAAAAAAAAAT+CGG | + | chr6_3:86614385-86614404 | Msa0962870:intron | 5.0% |
| ! | GAACAGGACAACATCGGCTA+CGG | - | chr6_3:86613826-86613845 | None:intergenic | 50.0% |
| GTTGTCCTGTTCTTGCAGCA+TGG | + | chr6_3:86613834-86613853 | Msa0962870:CDS | 50.0% | |
| TGAATGGTTTCCAAGGGCAG+TGG | - | chr6_3:86613879-86613898 | None:intergenic | 50.0% | |
| TCTGAGTCATCTGGCACCAA+AGG | - | chr6_3:86613941-86613960 | None:intergenic | 50.0% | |
| ! | TTGGAGATGGAAGTGTGAGG+AGG | + | chr6_3:86614119-86614138 | Msa0962870:CDS | 50.0% |
| ! | AGATGGAAGTGTGAGGAGGT+TGG | + | chr6_3:86614123-86614142 | Msa0962870:CDS | 50.0% |
| !! | AATATGGGTTGGGACGACGA+AGG | - | chr6_3:86615461-86615480 | None:intergenic | 50.0% |
| TCGTCCCAACCCATATTAGC+AGG | + | chr6_3:86615464-86615483 | Msa0962870:intron | 50.0% | |
| TCATACTCCTCCACTGCCCT+TGG | + | chr6_3:86613866-86613885 | Msa0962870:CDS | 55.0% | |
| ATGGTTTCCAAGGGCAGTGG+AGG | - | chr6_3:86613876-86613895 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 86613434 | 86616176 | 86613434 | ID=Msa0962870;Name=Msa0962870 |
| chr6_3 | mRNA | 86613434 | 86616176 | 86613434 | ID=Msa0962870-mRNA-1;Parent=Msa0962870;Name=Msa0962870-mRNA-1;_AED=0.01;_eAED=0.01;_QI=132|1|1|1|1|1|2|118|334 |
| chr6_3 | exon | 86613434 | 86614231 | 86613434 | ID=Msa0962870-mRNA-1:exon:15643;Parent=Msa0962870-mRNA-1 |
| chr6_3 | exon | 86615720 | 86616176 | 86615720 | ID=Msa0962870-mRNA-1:exon:15644;Parent=Msa0962870-mRNA-1 |
| chr6_3 | five_prime_UTR | 86613434 | 86613565 | 86613434 | ID=Msa0962870-mRNA-1:five_prime_utr;Parent=Msa0962870-mRNA-1 |
| chr6_3 | CDS | 86613566 | 86614231 | 86613566 | ID=Msa0962870-mRNA-1:cds;Parent=Msa0962870-mRNA-1 |
| chr6_3 | CDS | 86615720 | 86616058 | 86615720 | ID=Msa0962870-mRNA-1:cds;Parent=Msa0962870-mRNA-1 |
| chr6_3 | three_prime_UTR | 86616059 | 86616176 | 86616059 | ID=Msa0962870-mRNA-1:three_prime_utr;Parent=Msa0962870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
