Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964110 | KEH27021.1 | 67.500 | 160 | 13 | 1 | 1 | 121 | 1 | 160 | 2.70e-58 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964110 | sp|P29062|PR4A_TOBAC | 40.602 | 133 | 57 | 2 | 10 | 120 | 13 | 145 | 1.40e-16 | 73.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0559190 | Msa0964110 | 0.801531 | 8.615459e-49 | -8.615850e-47 |
| Msa0964110 | Msa0964130 | 0.823864 | 1.101122e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964110 | MtrunA17_Chr6g0484021 | 67.500 | 160 | 13 | 1 | 1 | 121 | 21 | 180 | 3.10e-61 | 197 |
| Msa0964110 | MtrunA17_Chr6g0484041 | 56.051 | 157 | 30 | 2 | 1 | 120 | 13 | 167 | 5.15e-47 | 160 |
| Msa0964110 | MtrunA17_Chr6g0483971 | 49.342 | 152 | 43 | 2 | 1 | 124 | 1 | 146 | 9.32e-36 | 124 |
| Msa0964110 | MtrunA17_Chr6g0484031 | 45.570 | 158 | 41 | 2 | 1 | 123 | 1 | 148 | 8.35e-34 | 122 |
| Msa0964110 | MtrunA17_Chr1g0190651 | 39.456 | 147 | 54 | 5 | 4 | 121 | 5 | 145 | 8.15e-18 | 74.3 |
| Msa0964110 | MtrunA17_Chr1g0190661 | 35.461 | 141 | 54 | 5 | 11 | 120 | 10 | 144 | 1.44e-17 | 73.6 |
| Msa0964110 | MtrunA17_Chr1g0190671 | 37.589 | 141 | 51 | 5 | 11 | 120 | 10 | 144 | 2.65e-17 | 72.8 |
| Msa0964110 | MtrunA17_Chr1g0190641 | 37.226 | 137 | 61 | 5 | 8 | 121 | 6 | 140 | 1.32e-16 | 71.2 |
| Msa0964110 | MtrunA17_Chr7g0274181 | 56.923 | 65 | 24 | 1 | 70 | 130 | 134 | 198 | 1.28e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964110 | AT3G04720.1 | 37.705 | 122 | 54 | 2 | 22 | 121 | 71 | 192 | 2.21e-14 | 67.0 |
Find 33 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTATACCTTGTTTAGTTGC+TGG | 0.284808 | 6_3:+90388049 | None:intergenic |
| AATATAATCAACTTATAATA+AGG | 0.304348 | 6_3:+90386761 | None:intergenic |
| GATCAACAATTCTTACTGTT+TGG | 0.324675 | 6_3:+90386920 | None:intergenic |
| TTTCAACTTCTTGACACATC+TGG | 0.344315 | 6_3:-90386859 | Msa0964110:CDS |
| GATGCAGAATTGCCACCATC+TGG | 0.361946 | 6_3:+90386970 | None:intergenic |
| CTTGGTGGATTATGAATTTG+TGG | 0.393004 | 6_3:-90386812 | Msa0964110:CDS |
| TGCTCAAGGTTGCCTCTTGG+TGG | 0.407301 | 6_3:-90386827 | Msa0964110:CDS |
| TGGAGGGCTTGACTTGGATA+TGG | 0.422246 | 6_3:-90386887 | Msa0964110:CDS |
| CCAGCAACTAAACAAGGTAT+AGG | 0.424056 | 6_3:-90388049 | Msa0964110:CDS |
| TTCAACTTCTTGACACATCT+GGG | 0.435899 | 6_3:-90386858 | Msa0964110:CDS |
| ATTGTTGATCATTGTAGTAA+TGG | 0.457570 | 6_3:-90386907 | Msa0964110:CDS |
| AACAATTCTTACTGTTTGGA+TGG | 0.477810 | 6_3:+90386924 | None:intergenic |
| ATTCTTACTGTTTGGATGGT+CGG | 0.479207 | 6_3:+90386928 | None:intergenic |
| GATTATGAATTTGTGGATTG+TGG | 0.493228 | 6_3:-90386805 | Msa0964110:CDS |
| ACGTGGAACTTGAACACATC+AGG | 0.504848 | 6_3:-90388022 | Msa0964110:CDS |
| CTTCTTGACACATCTGGGGA+TGG | 0.516216 | 6_3:-90386853 | Msa0964110:CDS |
| GAATGCTCAAGGTTGCCTCT+TGG | 0.526481 | 6_3:-90386830 | Msa0964110:CDS |
| TTGATCATTGTAGTAATGGA+GGG | 0.544189 | 6_3:-90386903 | Msa0964110:CDS |
| GTTGATCATTGTAGTAATGG+AGG | 0.550472 | 6_3:-90386904 | Msa0964110:CDS |
| TTCTTGACACATCTGGGGAT+GGG | 0.555946 | 6_3:-90386852 | Msa0964110:CDS |
| TAGTAATGGAGGGCTTGACT+TGG | 0.565270 | 6_3:-90386893 | Msa0964110:CDS |
| ATGCAGAATTGCCACCATCT+GGG | 0.569276 | 6_3:+90386971 | None:intergenic |
| AAGGTAAAAGAGATAAGTAG+TGG | 0.573532 | 6_3:+90386780 | None:intergenic |
| ATTGTTTGCACTTTGAGCTG+AGG | 0.586430 | 6_3:+90388102 | None:intergenic |
| TCTGGGGATGGGAATGCTCA+AGG | 0.599060 | 6_3:-90386841 | Msa0964110:CDS |
| TCAACTTCTTGACACATCTG+GGG | 0.611129 | 6_3:-90386857 | Msa0964110:CDS |
| GATTCTCCAGCAACTAAACA+AGG | 0.616423 | 6_3:-90388055 | Msa0964110:CDS |
| ATATCAACACCAAATCCAGA+AGG | 0.643431 | 6_3:+90388143 | None:intergenic |
| TTGCAGGTGACAAACCCAGA+TGG | 0.647514 | 6_3:-90386985 | Msa0964110:intron |
| CAAATTCATAATCCACCAAG+AGG | 0.653878 | 6_3:+90386815 | None:intergenic |
| CAGGTGACAAACCCAGATGG+TGG | 0.664040 | 6_3:-90386982 | Msa0964110:CDS |
| GAACTTGAACACATCAGGTG+TGG | 0.677356 | 6_3:-90388017 | Msa0964110:intron |
| AACAAGGTATAGGAAACACG+TGG | 0.719546 | 6_3:-90388039 | Msa0964110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTTTAACTATTTCA+AGG | - | chr6_3:90387643-90387662 | Msa0964110:intron | 10.0% |
| !!! | ATTTTTTTTAACTATTTCAA+GGG | - | chr6_3:90387644-90387663 | Msa0964110:intron | 10.0% |
| !!! | AATTTTTTTTAACTATTTCA+AGG | - | chr6_3:90387643-90387662 | Msa0964110:intron | 10.0% |
| !!! | ATTTTTTTTAACTATTTCAA+GGG | - | chr6_3:90387644-90387663 | Msa0964110:intron | 10.0% |
| !!! | TTAATTTTTGTCAAGTAGTT+TGG | - | chr6_3:90387508-90387527 | Msa0964110:intron | 20.0% |
| !!! | ATGAACTGTATTTTTTTCTT+TGG | - | chr6_3:90387600-90387619 | Msa0964110:intron | 20.0% |
| !! | CAACTAATATTTGAACTTTA+CGG | - | chr6_3:90387752-90387771 | Msa0964110:intron | 20.0% |
| !! | AACTAATATTTGAACTTTAC+GGG | - | chr6_3:90387753-90387772 | Msa0964110:intron | 20.0% |
| !!! | TTAATTTTTGTCAAGTAGTT+TGG | - | chr6_3:90387508-90387527 | Msa0964110:intron | 20.0% |
| !!! | ATGAACTGTATTTTTTTCTT+TGG | - | chr6_3:90387600-90387619 | Msa0964110:intron | 20.0% |
| !! | CAACTAATATTTGAACTTTA+CGG | - | chr6_3:90387752-90387771 | Msa0964110:intron | 20.0% |
| !! | AACTAATATTTGAACTTTAC+GGG | - | chr6_3:90387753-90387772 | Msa0964110:intron | 20.0% |
| !! | GCATTTTGAACTTTTACTTT+GGG | + | chr6_3:90387056-90387075 | None:intergenic | 25.0% |
| ! | AGAAAAAAATACAGTTCATG+TGG | + | chr6_3:90387599-90387618 | None:intergenic | 25.0% |
| ! | AGTTATTCTAAATGTGTAAC+AGG | + | chr6_3:90387688-90387707 | None:intergenic | 25.0% |
| ! | AAATTCACACTCTTAACTTA+AGG | - | chr6_3:90387779-90387798 | Msa0964110:intron | 25.0% |
| ! | CACGTAGTATTTATCAATTT+CGG | - | chr6_3:90387841-90387860 | Msa0964110:intron | 25.0% |
| ! | TGAATAAACTCTATGGATAT+TGG | + | chr6_3:90387908-90387927 | None:intergenic | 25.0% |
| ! | GACAAAATGAATAAACTCTA+TGG | + | chr6_3:90387915-90387934 | None:intergenic | 25.0% |
| ! | ATTGTTGATCATTGTAGTAA+TGG | - | chr6_3:90388021-90388040 | Msa0964110:CDS | 25.0% |
| !! | GCATTTTGAACTTTTACTTT+GGG | + | chr6_3:90387056-90387075 | None:intergenic | 25.0% |
| ! | AGAAAAAAATACAGTTCATG+TGG | + | chr6_3:90387599-90387618 | None:intergenic | 25.0% |
| ! | AGTTATTCTAAATGTGTAAC+AGG | + | chr6_3:90387688-90387707 | None:intergenic | 25.0% |
| ! | AAATTCACACTCTTAACTTA+AGG | - | chr6_3:90387779-90387798 | Msa0964110:intron | 25.0% |
| ! | CACGTAGTATTTATCAATTT+CGG | - | chr6_3:90387841-90387860 | Msa0964110:intron | 25.0% |
| ! | TGAATAAACTCTATGGATAT+TGG | + | chr6_3:90387908-90387927 | None:intergenic | 25.0% |
| ! | GACAAAATGAATAAACTCTA+TGG | + | chr6_3:90387915-90387934 | None:intergenic | 25.0% |
| ! | ATTGTTGATCATTGTAGTAA+TGG | - | chr6_3:90388021-90388040 | Msa0964110:CDS | 25.0% |
| ! | GGCATTTTGAACTTTTACTT+TGG | + | chr6_3:90387057-90387076 | None:intergenic | 30.0% |
| ! | TATGAGCTTATGTTAAGTTG+TGG | + | chr6_3:90387342-90387361 | None:intergenic | 30.0% |
| ! | GCATTTTGGACTTTTACTTT+GGG | - | chr6_3:90387411-90387430 | Msa0964110:intron | 30.0% |
| ! | CAACCTGAAAAGACATTTTA+GGG | + | chr6_3:90387570-90387589 | None:intergenic | 30.0% |
| AACAATTCTTACTGTTTGGA+TGG | + | chr6_3:90388007-90388026 | None:intergenic | 30.0% | |
| GATCAACAATTCTTACTGTT+TGG | + | chr6_3:90388011-90388030 | None:intergenic | 30.0% | |
| ! | TTGATCATTGTAGTAATGGA+GGG | - | chr6_3:90388025-90388044 | Msa0964110:CDS | 30.0% |
| ! | GATTATGAATTTGTGGATTG+TGG | - | chr6_3:90388123-90388142 | Msa0964110:CDS | 30.0% |
| AAGGTAAAAGAGATAAGTAG+TGG | + | chr6_3:90388151-90388170 | None:intergenic | 30.0% | |
| ! | GGCATTTTGAACTTTTACTT+TGG | + | chr6_3:90387057-90387076 | None:intergenic | 30.0% |
| ! | TATGAGCTTATGTTAAGTTG+TGG | + | chr6_3:90387342-90387361 | None:intergenic | 30.0% |
| ! | GCATTTTGGACTTTTACTTT+GGG | - | chr6_3:90387411-90387430 | Msa0964110:intron | 30.0% |
| ! | CAACCTGAAAAGACATTTTA+GGG | + | chr6_3:90387570-90387589 | None:intergenic | 30.0% |
| AACAATTCTTACTGTTTGGA+TGG | + | chr6_3:90388007-90388026 | None:intergenic | 30.0% | |
| GATCAACAATTCTTACTGTT+TGG | + | chr6_3:90388011-90388030 | None:intergenic | 30.0% | |
| ! | TTGATCATTGTAGTAATGGA+GGG | - | chr6_3:90388025-90388044 | Msa0964110:CDS | 30.0% |
| ! | GATTATGAATTTGTGGATTG+TGG | - | chr6_3:90388123-90388142 | Msa0964110:CDS | 30.0% |
| AAGGTAAAAGAGATAAGTAG+TGG | + | chr6_3:90388151-90388170 | None:intergenic | 30.0% | |
| ATATCAACACCAAATCCAGA+AGG | + | chr6_3:90386788-90386807 | None:intergenic | 35.0% | |
| ! | GATATTTTGTGTTCTAGCAC+TGG | - | chr6_3:90386803-90386822 | Msa0964110:CDS | 35.0% |
| TGGTATGTGGTAAATATGGT+TGG | - | chr6_3:90386931-90386950 | Msa0964110:CDS | 35.0% | |
| GGTATGTGGTAAATATGGTT+GGG | - | chr6_3:90386932-90386951 | Msa0964110:CDS | 35.0% | |
| TTCTGTTCAGAATACACTAG+CGG | + | chr6_3:90387230-90387249 | None:intergenic | 35.0% | |
| ! | GGCATTTTGGACTTTTACTT+TGG | - | chr6_3:90387410-90387429 | Msa0964110:intron | 35.0% |
| !! | ACTTTTACTTTGGGAATGAG+CGG | - | chr6_3:90387420-90387439 | Msa0964110:intron | 35.0% |
| ! | GCAACCTGAAAAGACATTTT+AGG | + | chr6_3:90387571-90387590 | None:intergenic | 35.0% |
| AGATTCATCATCATTCACTC+AGG | + | chr6_3:90387867-90387886 | None:intergenic | 35.0% | |
| ! | GAATGATGATGAATCTCTAG+TGG | - | chr6_3:90387871-90387890 | Msa0964110:intron | 35.0% |
| ATTCTTACTGTTTGGATGGT+CGG | + | chr6_3:90388003-90388022 | None:intergenic | 35.0% | |
| GTTGATCATTGTAGTAATGG+AGG | - | chr6_3:90388024-90388043 | Msa0964110:CDS | 35.0% | |
| TTTCAACTTCTTGACACATC+TGG | - | chr6_3:90388069-90388088 | Msa0964110:CDS | 35.0% | |
| TTCAACTTCTTGACACATCT+GGG | - | chr6_3:90388070-90388089 | Msa0964110:CDS | 35.0% | |
| CAAATTCATAATCCACCAAG+AGG | + | chr6_3:90388116-90388135 | None:intergenic | 35.0% | |
| !! | CTTGGTGGATTATGAATTTG+TGG | - | chr6_3:90388116-90388135 | Msa0964110:CDS | 35.0% |
| ATATCAACACCAAATCCAGA+AGG | + | chr6_3:90386788-90386807 | None:intergenic | 35.0% | |
| ! | GATATTTTGTGTTCTAGCAC+TGG | - | chr6_3:90386803-90386822 | Msa0964110:CDS | 35.0% |
| TGGTATGTGGTAAATATGGT+TGG | - | chr6_3:90386931-90386950 | Msa0964110:CDS | 35.0% | |
| GGTATGTGGTAAATATGGTT+GGG | - | chr6_3:90386932-90386951 | Msa0964110:CDS | 35.0% | |
| TTCTGTTCAGAATACACTAG+CGG | + | chr6_3:90387230-90387249 | None:intergenic | 35.0% | |
| ! | GGCATTTTGGACTTTTACTT+TGG | - | chr6_3:90387410-90387429 | Msa0964110:intron | 35.0% |
| !! | ACTTTTACTTTGGGAATGAG+CGG | - | chr6_3:90387420-90387439 | Msa0964110:intron | 35.0% |
| ! | GCAACCTGAAAAGACATTTT+AGG | + | chr6_3:90387571-90387590 | None:intergenic | 35.0% |
| AGATTCATCATCATTCACTC+AGG | + | chr6_3:90387867-90387886 | None:intergenic | 35.0% | |
| ! | GAATGATGATGAATCTCTAG+TGG | - | chr6_3:90387871-90387890 | Msa0964110:intron | 35.0% |
| ATTCTTACTGTTTGGATGGT+CGG | + | chr6_3:90388003-90388022 | None:intergenic | 35.0% | |
| GTTGATCATTGTAGTAATGG+AGG | - | chr6_3:90388024-90388043 | Msa0964110:CDS | 35.0% | |
| TTTCAACTTCTTGACACATC+TGG | - | chr6_3:90388069-90388088 | Msa0964110:CDS | 35.0% | |
| TTCAACTTCTTGACACATCT+GGG | - | chr6_3:90388070-90388089 | Msa0964110:CDS | 35.0% | |
| CAAATTCATAATCCACCAAG+AGG | + | chr6_3:90388116-90388135 | None:intergenic | 35.0% | |
| !! | CTTGGTGGATTATGAATTTG+TGG | - | chr6_3:90388116-90388135 | Msa0964110:CDS | 35.0% |
| ! | GTTGAAGCAACTTTTCCTTC+TGG | - | chr6_3:90386770-90386789 | Msa0964110:CDS | 40.0% |
| ! | GCAACTTTTCCTTCTGGATT+TGG | - | chr6_3:90386776-90386795 | Msa0964110:CDS | 40.0% |
| ATTGTTTGCACTTTGAGCTG+AGG | + | chr6_3:90386829-90386848 | None:intergenic | 40.0% | |
| GATTCTCCAGCAACTAAACA+AGG | - | chr6_3:90386873-90386892 | Msa0964110:CDS | 40.0% | |
| ! | CCTATACCTTGTTTAGTTGC+TGG | + | chr6_3:90386882-90386901 | None:intergenic | 40.0% |
| CCAGCAACTAAACAAGGTAT+AGG | - | chr6_3:90386879-90386898 | Msa0964110:CDS | 40.0% | |
| AACAAGGTATAGGAAACACG+TGG | - | chr6_3:90386889-90386908 | Msa0964110:CDS | 40.0% | |
| GGTGTGGTATGTGGTAAATA+TGG | - | chr6_3:90386927-90386946 | Msa0964110:CDS | 40.0% | |
| AGTTGCGCTAGTGTATTATG+AGG | - | chr6_3:90387090-90387109 | Msa0964110:intron | 40.0% | |
| ! | ATTTTGTCACCCCTAATTGC+AGG | - | chr6_3:90387927-90387946 | Msa0964110:intron | 40.0% |
| TCAACTTCTTGACACATCTG+GGG | - | chr6_3:90388071-90388090 | Msa0964110:CDS | 40.0% | |
| ! | GTTGAAGCAACTTTTCCTTC+TGG | - | chr6_3:90386770-90386789 | Msa0964110:CDS | 40.0% |
| ! | GCAACTTTTCCTTCTGGATT+TGG | - | chr6_3:90386776-90386795 | Msa0964110:CDS | 40.0% |
| ATTGTTTGCACTTTGAGCTG+AGG | + | chr6_3:90386829-90386848 | None:intergenic | 40.0% | |
| GATTCTCCAGCAACTAAACA+AGG | - | chr6_3:90386873-90386892 | Msa0964110:CDS | 40.0% | |
| ! | CCTATACCTTGTTTAGTTGC+TGG | + | chr6_3:90386882-90386901 | None:intergenic | 40.0% |
| CCAGCAACTAAACAAGGTAT+AGG | - | chr6_3:90386879-90386898 | Msa0964110:CDS | 40.0% | |
| AACAAGGTATAGGAAACACG+TGG | - | chr6_3:90386889-90386908 | Msa0964110:CDS | 40.0% | |
| GGTGTGGTATGTGGTAAATA+TGG | - | chr6_3:90386927-90386946 | Msa0964110:CDS | 40.0% | |
| AGTTGCGCTAGTGTATTATG+AGG | - | chr6_3:90387090-90387109 | Msa0964110:intron | 40.0% | |
| ! | ATTTTGTCACCCCTAATTGC+AGG | - | chr6_3:90387927-90387946 | Msa0964110:intron | 40.0% |
| TCAACTTCTTGACACATCTG+GGG | - | chr6_3:90388071-90388090 | Msa0964110:CDS | 40.0% | |
| ACGTGGAACTTGAACACATC+AGG | - | chr6_3:90386906-90386925 | Msa0964110:CDS | 45.0% | |
| GAACTTGAACACATCAGGTG+TGG | - | chr6_3:90386911-90386930 | Msa0964110:CDS | 45.0% | |
| AACACATCAGGTGTGGTATG+TGG | - | chr6_3:90386918-90386937 | Msa0964110:CDS | 45.0% | |
| CCACAAACAGATTTGCCAAC+AGG | + | chr6_3:90386981-90387000 | None:intergenic | 45.0% | |
| CCTGTTGGCAAATCTGTTTG+TGG | - | chr6_3:90386978-90386997 | Msa0964110:CDS | 45.0% | |
| GGGAATGAGCAGAACTGTTT+GGG | + | chr6_3:90387036-90387055 | None:intergenic | 45.0% | |
| TGGGAATGAGCAGAACTGTT+TGG | + | chr6_3:90387037-90387056 | None:intergenic | 45.0% | |
| ! | AGCGCAACTTAAGTTGCGTA+GGG | + | chr6_3:90387369-90387388 | None:intergenic | 45.0% |
| ! | TAGCGCAACTTAAGTTGCGT+AGG | + | chr6_3:90387368-90387387 | None:intergenic | 45.0% |
| ! | TAGCGCAACTTAAGTTGCGT+AGG | - | chr6_3:90387368-90387387 | Msa0964110:intron | 45.0% |
| ! | AGCGCAACTTAAGTTGCGTA+GGG | - | chr6_3:90387369-90387388 | Msa0964110:intron | 45.0% |
| !!! | TAAGTTGCGTAGGGGCATTT+TGG | - | chr6_3:90387397-90387416 | Msa0964110:intron | 45.0% |
| ! | GCGCCCTAAAATGTCTTTTC+AGG | - | chr6_3:90387564-90387583 | Msa0964110:intron | 45.0% |
| GGTTTGTCACCTGCAATTAG+GGG | + | chr6_3:90387939-90387958 | None:intergenic | 45.0% | |
| GGGTTTGTCACCTGCAATTA+GGG | + | chr6_3:90387940-90387959 | None:intergenic | 45.0% | |
| TGGGTTTGTCACCTGCAATT+AGG | + | chr6_3:90387941-90387960 | None:intergenic | 45.0% | |
| ATGCAGAATTGCCACCATCT+GGG | + | chr6_3:90387960-90387979 | None:intergenic | 45.0% | |
| ! | TAGTAATGGAGGGCTTGACT+TGG | - | chr6_3:90388035-90388054 | Msa0964110:CDS | 45.0% |
| TTCTTGACACATCTGGGGAT+GGG | - | chr6_3:90388076-90388095 | Msa0964110:CDS | 45.0% | |
| ACGTGGAACTTGAACACATC+AGG | - | chr6_3:90386906-90386925 | Msa0964110:CDS | 45.0% | |
| GAACTTGAACACATCAGGTG+TGG | - | chr6_3:90386911-90386930 | Msa0964110:CDS | 45.0% | |
| AACACATCAGGTGTGGTATG+TGG | - | chr6_3:90386918-90386937 | Msa0964110:CDS | 45.0% | |
| CCACAAACAGATTTGCCAAC+AGG | + | chr6_3:90386981-90387000 | None:intergenic | 45.0% | |
| CCTGTTGGCAAATCTGTTTG+TGG | - | chr6_3:90386978-90386997 | Msa0964110:CDS | 45.0% | |
| GGGAATGAGCAGAACTGTTT+GGG | + | chr6_3:90387036-90387055 | None:intergenic | 45.0% | |
| TGGGAATGAGCAGAACTGTT+TGG | + | chr6_3:90387037-90387056 | None:intergenic | 45.0% | |
| ! | AGCGCAACTTAAGTTGCGTA+GGG | + | chr6_3:90387369-90387388 | None:intergenic | 45.0% |
| ! | TAGCGCAACTTAAGTTGCGT+AGG | + | chr6_3:90387368-90387387 | None:intergenic | 45.0% |
| ! | TAGCGCAACTTAAGTTGCGT+AGG | - | chr6_3:90387368-90387387 | Msa0964110:intron | 45.0% |
| ! | AGCGCAACTTAAGTTGCGTA+GGG | - | chr6_3:90387369-90387388 | Msa0964110:intron | 45.0% |
| !!! | TAAGTTGCGTAGGGGCATTT+TGG | - | chr6_3:90387397-90387416 | Msa0964110:intron | 45.0% |
| ! | GCGCCCTAAAATGTCTTTTC+AGG | - | chr6_3:90387564-90387583 | Msa0964110:intron | 45.0% |
| GGTTTGTCACCTGCAATTAG+GGG | + | chr6_3:90387939-90387958 | None:intergenic | 45.0% | |
| GGGTTTGTCACCTGCAATTA+GGG | + | chr6_3:90387940-90387959 | None:intergenic | 45.0% | |
| TGGGTTTGTCACCTGCAATT+AGG | + | chr6_3:90387941-90387960 | None:intergenic | 45.0% | |
| ATGCAGAATTGCCACCATCT+GGG | + | chr6_3:90387960-90387979 | None:intergenic | 45.0% | |
| ! | TAGTAATGGAGGGCTTGACT+TGG | - | chr6_3:90388035-90388054 | Msa0964110:CDS | 45.0% |
| TTCTTGACACATCTGGGGAT+GGG | - | chr6_3:90388076-90388095 | Msa0964110:CDS | 45.0% | |
| ! | TATGGTTGGGCTGCCTTTTG+TGG | - | chr6_3:90386945-90386964 | Msa0964110:CDS | 50.0% |
| AGGACCAACAGGTCCACAAA+AGG | + | chr6_3:90386961-90386980 | None:intergenic | 50.0% | |
| GATTTGCCAACAGGACCAAC+AGG | + | chr6_3:90386972-90386991 | None:intergenic | 50.0% | |
| ! | GCGCAACTTAAGTTGCGTAG+GGG | + | chr6_3:90387370-90387389 | None:intergenic | 50.0% |
| ! | GCGCAACTTAAGTTGCGTAG+GGG | - | chr6_3:90387370-90387389 | Msa0964110:intron | 50.0% |
| TGGGAATGAGCGGAACTGTT+TGG | - | chr6_3:90387430-90387449 | Msa0964110:intron | 50.0% | |
| GGGAATGAGCGGAACTGTTT+GGG | - | chr6_3:90387431-90387450 | Msa0964110:intron | 50.0% | |
| TTGCAGGTGACAAACCCAGA+TGG | - | chr6_3:90387943-90387962 | Msa0964110:intron | 50.0% | |
| GATGCAGAATTGCCACCATC+TGG | + | chr6_3:90387961-90387980 | None:intergenic | 50.0% | |
| !! | TGGAGGGCTTGACTTGGATA+TGG | - | chr6_3:90388041-90388060 | Msa0964110:CDS | 50.0% |
| CTTCTTGACACATCTGGGGA+TGG | - | chr6_3:90388075-90388094 | Msa0964110:CDS | 50.0% | |
| GAATGCTCAAGGTTGCCTCT+TGG | - | chr6_3:90388098-90388117 | Msa0964110:CDS | 50.0% | |
| ! | TATGGTTGGGCTGCCTTTTG+TGG | - | chr6_3:90386945-90386964 | Msa0964110:CDS | 50.0% |
| AGGACCAACAGGTCCACAAA+AGG | + | chr6_3:90386961-90386980 | None:intergenic | 50.0% | |
| GATTTGCCAACAGGACCAAC+AGG | + | chr6_3:90386972-90386991 | None:intergenic | 50.0% | |
| ! | GCGCAACTTAAGTTGCGTAG+GGG | + | chr6_3:90387370-90387389 | None:intergenic | 50.0% |
| ! | GCGCAACTTAAGTTGCGTAG+GGG | - | chr6_3:90387370-90387389 | Msa0964110:intron | 50.0% |
| TGGGAATGAGCGGAACTGTT+TGG | - | chr6_3:90387430-90387449 | Msa0964110:intron | 50.0% | |
| GGGAATGAGCGGAACTGTTT+GGG | - | chr6_3:90387431-90387450 | Msa0964110:intron | 50.0% | |
| TTGCAGGTGACAAACCCAGA+TGG | - | chr6_3:90387943-90387962 | Msa0964110:intron | 50.0% | |
| GATGCAGAATTGCCACCATC+TGG | + | chr6_3:90387961-90387980 | None:intergenic | 50.0% | |
| !! | TGGAGGGCTTGACTTGGATA+TGG | - | chr6_3:90388041-90388060 | Msa0964110:CDS | 50.0% |
| CTTCTTGACACATCTGGGGA+TGG | - | chr6_3:90388075-90388094 | Msa0964110:CDS | 50.0% | |
| GAATGCTCAAGGTTGCCTCT+TGG | - | chr6_3:90388098-90388117 | Msa0964110:CDS | 50.0% | |
| ! | GCTGCCTTTTGTGGACCTGT+TGG | - | chr6_3:90386954-90386973 | Msa0964110:CDS | 55.0% |
| TGTGGACCTGTTGGTCCTGT+TGG | - | chr6_3:90386963-90386982 | Msa0964110:CDS | 55.0% | |
| CAGGTGACAAACCCAGATGG+TGG | - | chr6_3:90387946-90387965 | Msa0964110:intron | 55.0% | |
| TCTGGGGATGGGAATGCTCA+AGG | - | chr6_3:90388087-90388106 | Msa0964110:CDS | 55.0% | |
| TGCTCAAGGTTGCCTCTTGG+TGG | - | chr6_3:90388101-90388120 | Msa0964110:CDS | 55.0% | |
| ! | GCTGCCTTTTGTGGACCTGT+TGG | - | chr6_3:90386954-90386973 | Msa0964110:CDS | 55.0% |
| TGTGGACCTGTTGGTCCTGT+TGG | - | chr6_3:90386963-90386982 | Msa0964110:CDS | 55.0% | |
| CAGGTGACAAACCCAGATGG+TGG | - | chr6_3:90387946-90387965 | Msa0964110:intron | 55.0% | |
| TCTGGGGATGGGAATGCTCA+AGG | - | chr6_3:90388087-90388106 | Msa0964110:CDS | 55.0% | |
| TGCTCAAGGTTGCCTCTTGG+TGG | - | chr6_3:90388101-90388120 | Msa0964110:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 90386768 | 90388182 | 90386768 | ID=Msa0964110;Name=Msa0964110 |
| chr6_3 | mRNA | 90386768 | 90388182 | 90386768 | ID=Msa0964110-mRNA-1;Parent=Msa0964110;Name=Msa0964110-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|2|0|132 |
| chr6_3 | exon | 90388018 | 90388182 | 90388018 | ID=Msa0964110-mRNA-1:exon:16252;Parent=Msa0964110-mRNA-1 |
| chr6_3 | exon | 90386768 | 90387001 | 90386768 | ID=Msa0964110-mRNA-1:exon:16251;Parent=Msa0964110-mRNA-1 |
| chr6_3 | CDS | 90388018 | 90388182 | 90388018 | ID=Msa0964110-mRNA-1:cds;Parent=Msa0964110-mRNA-1 |
| chr6_3 | CDS | 90386768 | 90387001 | 90386768 | ID=Msa0964110-mRNA-1:cds;Parent=Msa0964110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
