AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0969070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0969070 MtrunA17_Chr6g0448881 100.000 377 0 0 1 377 1 377 0.0 784
Msa0969070 MtrunA17_Chr1g0175391 97.613 377 9 0 1 377 1 377 0.0 771
Msa0969070 MtrunA17_Chr7g0223901 97.082 377 11 0 1 377 1 377 0.0 769
Msa0969070 MtrunA17_Chr2g0328091 97.082 377 11 0 1 377 1 377 0.0 768
Msa0969070 MtrunA17_Chr7g0258721 96.021 377 15 0 1 377 1 377 0.0 763
Msa0969070 MtrunA17_Chr3g0129641 95.491 377 17 0 1 377 1 377 0.0 761
Msa0969070 MtrunA17_Chr2g0278591 93.899 377 23 0 1 377 1 377 0.0 754
Msa0969070 MtrunA17_Chr7g0224401 42.744 379 203 3 10 374 7 385 2.84e-120 353
Msa0969070 MtrunA17_Chr5g0427591 37.444 446 206 11 1 376 1 443 6.10e-93 285
Msa0969070 MtrunA17_Chr8g0361001 37.444 446 206 11 1 376 1 443 1.04e-92 285
Msa0969070 MtrunA17_Chr8g0381261 34.063 411 221 8 10 372 10 418 5.16e-72 231
Msa0969070 MtrunA17_Chr3g0089031 37.500 376 209 9 11 377 5 363 2.19e-68 219
Msa0969070 MtrunA17_Chr2g0305361 27.419 434 249 7 8 377 6 437 1.60e-57 193
Msa0969070 MtrunA17_Chr3g0080021 29.966 297 184 9 91 371 179 467 6.43e-41 150
Msa0969070 MtrunA17_Chr8g0369101 30.717 293 176 10 91 366 187 469 1.60e-36 138
Msa0969070 MtrunA17_Chr3g0111971 29.762 252 158 7 9 245 21 268 1.07e-23 102
Msa0969070 MtrunA17_Chr3g0111971 31.967 122 80 2 250 368 586 707 2.91e-15 77.4
Msa0969070 MtrunA17_Chr8g0336071 40.000 95 57 0 105 199 1 95 3.75e-19 81.6
Msa0969070 MtrunA17_Chr8g0336061 42.391 92 40 2 241 319 12 103 8.15e-19 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0969070 AT3G12110.1 96.817 377 12 0 1 377 1 377 0.0 767
Msa0969070 AT3G53750.1 96.021 377 15 0 1 377 1 377 0.0 763
Msa0969070 AT3G53750.2 96.021 377 15 0 1 377 1 377 0.0 763
Msa0969070 AT2G37620.1 96.021 377 15 0 1 377 1 377 0.0 763
Msa0969070 AT2G37620.3 96.021 377 15 0 1 377 1 377 0.0 763
Msa0969070 AT2G37620.2 96.021 377 15 0 1 377 1 377 0.0 763
Msa0969070 AT2G37620.4 96.021 377 15 0 1 377 1 377 0.0 763
Msa0969070 AT3G46520.2 95.756 377 16 0 1 377 1 377 0.0 759
Msa0969070 AT3G46520.1 95.756 377 16 0 1 377 1 377 0.0 759
Msa0969070 AT5G59370.2 95.491 377 17 0 1 377 1 377 0.0 758
Msa0969070 AT5G59370.1 95.491 377 17 0 1 377 1 377 0.0 758
Msa0969070 AT5G09810.1 94.695 377 20 0 1 377 1 377 0.0 756
Msa0969070 AT1G49240.1 92.308 377 29 0 1 377 1 377 0.0 746
Msa0969070 AT3G18780.2 92.042 377 30 0 1 377 1 377 0.0 744
Msa0969070 AT3G18780.3 92.042 377 30 0 1 377 1 377 0.0 744
Msa0969070 AT3G18780.1 91.922 359 29 0 1 359 1 359 0.0 705
Msa0969070 AT2G42100.1 84.511 368 57 0 10 377 11 378 0.0 678
Msa0969070 AT2G42090.1 70.270 370 105 1 7 376 1 365 0.0 568
Msa0969070 AT2G42170.1 77.711 332 71 1 46 377 1 329 0.0 560
Msa0969070 AT2G42170.3 77.711 332 71 1 46 377 1 329 0.0 560
Msa0969070 AT2G42170.4 77.564 312 67 1 46 357 1 309 0.0 523
Msa0969070 AT2G42170.2 77.564 312 67 1 46 357 1 309 0.0 523
Msa0969070 AT2G42170.5 77.876 226 47 1 152 377 9 231 4.33e-132 377
Msa0969070 AT3G27000.1 43.008 379 202 3 10 374 7 385 2.44e-121 356
Msa0969070 AT1G18450.1 37.020 443 209 9 1 376 1 440 3.41e-94 289
Msa0969070 AT1G13180.1 33.656 413 222 9 10 373 9 418 3.77e-72 231
Msa0969070 AT3G60830.1 37.995 379 211 9 7 377 1 363 3.62e-68 219
Msa0969070 AT3G33520.1 30.166 421 236 7 10 377 5 420 1.59e-59 198
Msa0969070 AT5G56180.3 30.986 284 171 9 91 358 50 324 4.01e-36 134
Msa0969070 AT5G56180.1 30.986 284 171 9 91 358 182 456 2.85e-35 135
Msa0969070 AT3G12380.2 30.620 258 154 8 9 245 21 274 1.74e-26 111
Msa0969070 AT3G12380.2 32.414 145 94 2 228 368 572 716 4.29e-16 80.5
Msa0969070 AT3G12380.1 30.469 256 151 8 9 245 21 268 9.07e-26 109
Msa0969070 AT3G12380.1 32.414 145 94 2 228 368 566 710 4.05e-16 80.5
Msa0969070 AT1G73910.1 35.862 145 74 3 1 129 1 142 2.00e-23 95.5
Msa0969070 AT1G73910.2 35.862 145 74 3 1 129 1 142 2.00e-23 95.5
Msa0969070 AT5G56180.2 31.683 202 115 8 91 281 182 371 5.21e-20 90.9
Msa0969070 AT1G73910.3 29.268 123 71 2 1 107 1 123 3.02e-12 64.7

Find 129 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGTAACATTGTCCTTTC+AGG 0.196967 6_4:-468375 Msa0969070:CDS
CAAAAGCTAGAATGAAATTA+AGG 0.200436 6_4:+467967 None:intergenic
TGAAAGTCTCAAACATGATT+TGG 0.228707 6_4:+469216 None:intergenic
GCAGGTATTGTGTTGGATTC+TGG 0.230442 6_4:-468810 Msa0969070:intron
CGCCATCCTTCGTCTTGATT+TGG 0.250680 6_4:-468736 Msa0969070:CDS
TGCTATGTATGTGGCCATTC+AGG 0.263866 6_4:-469186 Msa0969070:CDS
AAGAGAACTGGATGCTCTTC+GGG 0.272839 6_4:+469284 None:intergenic
CACCTTGATCTTCATGCTAC+TGG 0.286712 6_4:+468290 None:intergenic
GTCAACATCACATTTCATTA+TGG 0.291645 6_4:+468413 None:intergenic
TCTGCCATCTTCTTCTAGTA+TGG 0.312674 6_4:+469718 None:intergenic
CTGGATTGGTGGTTCTATCT+TGG 0.314091 6_4:-468238 Msa0969070:CDS
TAATAATAATGAAGATGAAT+TGG 0.327678 6_4:+467914 None:intergenic
TTCTAAATTGTCTGAGCAAT+AGG 0.330087 6_4:-468022 Msa0969070:exon
AGCATGGTATTGTTAGCAAT+TGG 0.332769 6_4:-469361 Msa0969070:CDS
CTAACAATACCATGCTCAAT+TGG 0.337000 6_4:+469368 None:intergenic
ATCTTCTCACGATTGGCCTT+TGG 0.345852 6_4:+469242 None:intergenic
CTCCACTGCAGAGCTGGTCT+TGG 0.349066 6_4:+468566 None:intergenic
CGATTGGCCTTTGGATTAAG+AGG 0.360842 6_4:+469251 None:intergenic
AAACCTGTTGGAAGGTGCTT+AGG 0.362509 6_4:+468211 None:intergenic
GAAAGTCTCAAACATGATTT+GGG 0.367813 6_4:+469217 None:intergenic
GGGATGACATGGAAAAGATT+TGG 0.369928 6_4:-469340 Msa0969070:CDS
TACTGGTGTTATGGTTGGTA+TGG 0.379253 6_4:-469456 Msa0969070:CDS
CACTTCCTATGCACAATTGA+TGG 0.381676 6_4:+468046 None:intergenic
GGAGGTACAACCATGTTTCC+TGG 0.389369 6_4:-468354 Msa0969070:CDS
TCCTCGTCATACTGGTGTTA+TGG 0.389893 6_4:-469465 Msa0969070:CDS
TCTAAATTGTCTGAGCAATA+GGG 0.391461 6_4:-468021 Msa0969070:exon
GGAGCTTCTGTTAAGAGAAC+TGG 0.393950 6_4:+469272 None:intergenic
GTTGGTCGTCCTCGTCATAC+TGG 0.402593 6_4:-469473 Msa0969070:CDS
AGGGCATAACCCTCGTAGAT+AGG 0.410475 6_4:+468765 None:intergenic
GCCGTGTTTCCCAGCATTGT+TGG 0.417879 6_4:-469491 Msa0969070:CDS
TAAGAGAACTGGATGCTCTT+CGG 0.421656 6_4:+469283 None:intergenic
GATGGGCAAGTCATCACTAT+TGG 0.422821 6_4:-468525 Msa0969070:CDS
ATCCCTAAGCACCTTCCAAC+AGG 0.423722 6_4:-468214 Msa0969070:intron
TTGGGTCATCTTCTCACGAT+TGG 0.425034 6_4:+469235 None:intergenic
AAAAGCTAGAATGAAATTAA+GGG 0.425273 6_4:+467968 None:intergenic
CTTGTTTGTGACAATGGAAC+GGG 0.425360 6_4:-469676 Msa0969070:CDS
ATCCTTCGTCTTGATTTGGC+TGG 0.433881 6_4:-468732 Msa0969070:CDS
AGTATGGTTTGTTGATCAGC+TGG 0.435291 6_4:+469734 None:intergenic
GCTCTTCTCCACTGCAGAGC+TGG 0.449641 6_4:+468560 None:intergenic
CAACCTCTTGTTTGTGACAA+TGG 0.449997 6_4:-469682 Msa0969070:CDS
ATAGTGATGACTTGCCCATC+AGG 0.457656 6_4:+468528 None:intergenic
CCAACCATCCATGGTGGGAA+TGG 0.470099 6_4:-468469 Msa0969070:CDS
CTGAGAGAAAGTACAGTGTC+TGG 0.474213 6_4:-468257 Msa0969070:CDS
AACCTGTTGGAAGGTGCTTA+GGG 0.475906 6_4:+468212 None:intergenic
ATCGTTTGACAATAAACTCC+TGG 0.475964 6_4:+467937 None:intergenic
ACCTTGATCTTCATGCTACT+GGG 0.478858 6_4:+468291 None:intergenic
ACGAGGACGACCAACAATGC+TGG 0.486180 6_4:+469481 None:intergenic
CTGAGCAATAGGGTTATTGA+AGG 0.489374 6_4:-468011 Msa0969070:three_prime_UTR
GCTTCCATTCCCACCATGGA+TGG 0.492783 6_4:+468465 None:intergenic
TTTCATTATGGAGTTGTAAG+TGG 0.494092 6_4:+468425 None:intergenic
GACACGAAGCTCATTATAGA+AGG 0.496324 6_4:+469310 None:intergenic
TACGCCAGTGGTCGTACAAC+CGG 0.497426 6_4:-469149 Msa0969070:intron
TAACAATACCATGCTCAATT+GGG 0.501628 6_4:+469369 None:intergenic
GATGGTTGGTATAAGACCTC+TGG 0.505376 6_4:+468483 None:intergenic
CACAATTTCACGCTCTGCTG+AGG 0.506159 6_4:+468650 None:intergenic
AAGTACAGTGTCTGGATTGG+TGG 0.508102 6_4:-468249 Msa0969070:CDS
CCATTCCCACCATGGATGGT+TGG 0.508876 6_4:+468469 None:intergenic
AAGGCTGAGTATGATGAGTC+TGG 0.508996 6_4:-468070 Msa0969070:CDS
AATAGGGTTATTGAAGGAAA+AGG 0.509556 6_4:-468005 Msa0969070:three_prime_UTR
TGAATGGCCACATACATAGC+AGG 0.510407 6_4:+469188 None:intergenic
TGCAGCTTCCATTCCCACCA+TGG 0.512897 6_4:+468461 None:intergenic
CAGACACTGTACTTTCTCTC+AGG 0.515639 6_4:+468258 None:intergenic
GCATGGTATTGTTAGCAATT+GGG 0.518576 6_4:-469360 Msa0969070:CDS
GAGTGAAAGAACAGCCTGAA+TGG 0.531083 6_4:+469172 None:intergenic
GACGAAGGATGGCGTGTGGG+AGG 0.532816 6_4:+468745 None:intergenic
ATTGTGTTGGATTCTGGTGA+TGG 0.535950 6_4:-468804 Msa0969070:CDS
AAAGGACAATGTTACCATAC+AGG 0.536912 6_4:+468379 None:intergenic
CTAGCTCTTGCTCATAGTCA+AGG 0.538467 6_4:+468595 None:intergenic
ACGAAGGATGGCGTGTGGGA+GGG 0.539544 6_4:+468746 None:intergenic
GGGCATAACCCTCGTAGATA+GGG 0.542873 6_4:+468766 None:intergenic
ATCAGCAATGCCAGGAAACA+TGG 0.545439 6_4:+468344 None:intergenic
CGTCATACTGGTGTTATGGT+TGG 0.545699 6_4:-469461 Msa0969070:CDS
CTCATTCTATCAGCAATGCC+AGG 0.546672 6_4:+468336 None:intergenic
TGTTAGCAATTGGGATGACA+TGG 0.552376 6_4:-469351 Msa0969070:CDS
CAATGCCCCTGCTATGTATG+TGG 0.552795 6_4:-469195 Msa0969070:CDS
AGCCAAATCAAGACGAAGGA+TGG 0.553843 6_4:+468734 None:intergenic
ACCAACAATGCTGGGAAACA+CGG 0.555422 6_4:+469490 None:intergenic
TGAAATGTGATGTTGACATC+AGG 0.556293 6_4:-468407 Msa0969070:CDS
GAGGGACATGAAGGAAAAGC+TGG 0.556301 6_4:-468628 Msa0969070:CDS
AGAGCTATGAGTTGCCTGAT+GGG 0.561878 6_4:-468542 Msa0969070:CDS
AAGAGCTATGAGTTGCCTGA+TGG 0.561934 6_4:-468543 Msa0969070:CDS
CGAGGACGACCAACAATGCT+GGG 0.562344 6_4:+469482 None:intergenic
ACCCAGTAGCATGAAGATCA+AGG 0.570670 6_4:-468292 Msa0969070:CDS
ACTGGTGTTATGGTTGGTAT+GGG 0.571151 6_4:-469455 Msa0969070:CDS
AATTTCACGCTCTGCTGAGG+TGG 0.572067 6_4:+468653 None:intergenic
CAAACCATACTAGAAGAAGA+TGG 0.577148 6_4:-469722 Msa0969070:exon
TCTTGTTTGTGACAATGGAA+CGG 0.582019 6_4:-469677 Msa0969070:CDS
ATCCAAGACCAGCTCTGCAG+TGG 0.582930 6_4:-468568 Msa0969070:CDS
GACATCAGGAAAGACCTGTA+TGG 0.586044 6_4:-468393 Msa0969070:CDS
TGAAATTGTGAGGGACATGA+AGG 0.588484 6_4:-468637 Msa0969070:CDS
TTGTGACAATGGAACGGGAA+TGG 0.597725 6_4:-469671 Msa0969070:CDS
GGTCTTATACCAACCATCCA+TGG 0.598084 6_4:-468478 Msa0969070:CDS
CTGGACCATCAATTGTGCAT+AGG 0.599358 6_4:-468051 Msa0969070:CDS
CAATGGAACGGGAATGGTCA+AGG 0.601070 6_4:-469665 Msa0969070:intron
CTCAAGTACCCAATTGAGCA+TGG 0.601570 6_4:-469377 Msa0969070:CDS
ACATGGTTGTACCTCCTGAA+AGG 0.602998 6_4:+468361 None:intergenic
CAGCAGAGCGTGAAATTGTG+AGG 0.603654 6_4:-468647 Msa0969070:CDS
ATTACCGGTTGTACGACCAC+TGG 0.605389 6_4:+469145 None:intergenic
AGAAGCTCCTCTTAATCCAA+AGG 0.605929 6_4:-469258 Msa0969070:CDS
AGAAAGTACAGTGTCTGGAT+TGG 0.609058 6_4:-468252 Msa0969070:CDS
ATGGTGGGAATGGAAGCTGC+AGG 0.613135 6_4:-468459 Msa0969070:CDS
CAATTGGGTACTTGAGAGTG+AGG 0.613648 6_4:+469384 None:intergenic
CAAGACGAAGGATGGCGTGT+GGG 0.616699 6_4:+468742 None:intergenic
GTTCTTTCACTCTACGCCAG+TGG 0.617736 6_4:-469161 Msa0969070:CDS
GTTCCATTGTCACAAACAAG+AGG 0.618990 6_4:+469679 None:intergenic
TAGCTCTTGCTCATAGTCAA+GGG 0.620110 6_4:+468596 None:intergenic
ATGAAAATTCTGACAGAACG+TGG 0.621840 6_4:-468687 Msa0969070:CDS
AGCAGAGCGTGAAATTGTGA+GGG 0.623597 6_4:-468646 Msa0969070:CDS
GAATGGCCACATACATAGCA+GGG 0.623873 6_4:+469189 None:intergenic
CATTGCTGATAGAATGAGCA+AGG 0.630326 6_4:-468331 Msa0969070:CDS
GGTAACATTGTCCTTTCAGG+AGG 0.632428 6_4:-468372 Msa0969070:CDS
ATGCTGGGAAACACGGCACG+CGG 0.638206 6_4:+469497 None:intergenic
TCAAGACGAAGGATGGCGTG+TGG 0.645593 6_4:+468741 None:intergenic
TGTGCAGATGTGGATTGCAA+AGG 0.646194 6_4:-468089 Msa0969070:intron
GAAGAAGATGGCAGACGCTG+AGG 0.651588 6_4:-469710 Msa0969070:exon
TTATACCAACCATCCATGGT+GGG 0.653612 6_4:-468474 Msa0969070:CDS
AGATGCATATGTTGGTGATG+AGG 0.661651 6_4:-469426 Msa0969070:CDS
CTTATACCAACCATCCATGG+TGG 0.662201 6_4:-468475 Msa0969070:CDS
ACACTGTACTTTCTCTCAGG+CGG 0.665359 6_4:+468261 None:intergenic
GAGAACTGGATGCTCTTCGG+GGG 0.665855 6_4:+469286 None:intergenic
CCTCGTAGATAGGGACTGTG+TGG 0.679150 6_4:+468775 None:intergenic
CCACACAGTCCCTATCTACG+AGG 0.680054 6_4:-468775 Msa0969070:CDS
AGAGAACTGGATGCTCTTCG+GGG 0.684661 6_4:+469285 None:intergenic
GACCAGCCAAATCAAGACGA+AGG 0.685950 6_4:+468730 None:intergenic
AATGGCCACATACATAGCAG+GGG 0.701226 6_4:+469190 None:intergenic
CACACAGTCCCTATCTACGA+GGG 0.710128 6_4:-468774 Msa0969070:CDS
ACCATAACACCAGTATGACG+AGG 0.715543 6_4:+469464 None:intergenic
GATGAGGCACAATCTAAACG+TGG 0.755455 6_4:-469410 Msa0969070:CDS
CAGTAGCATGAAGATCAAGG+TGG 0.775622 6_4:-468289 Msa0969070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTCTTATTTTTGC+AGG - chr6_4:468733-468752 Msa0969070:CDS 15.0%
!! TAATAATAATGAAGATGAAT+TGG + chr6_4:469650-469669 None:intergenic 15.0%
!!! TTTATTTTTCTTATTTTTGC+AGG - chr6_4:468733-468752 Msa0969070:CDS 15.0%
!! TAATAATAATGAAGATGAAT+TGG + chr6_4:469650-469669 None:intergenic 15.0%
!! TAATATCATGAAATGATTAC+CGG + chr6_4:468434-468453 None:intergenic 20.0%
!!! TGTGATTTATAATTTTTCTC+CGG - chr6_4:468689-468708 Msa0969070:CDS 20.0%
!! ATCATAATTGAAAACAAAAC+CGG + chr6_4:468711-468730 None:intergenic 20.0%
!! AAAAGCTAGAATGAAATTAA+GGG + chr6_4:469596-469615 None:intergenic 20.0%
!! TAATATCATGAAATGATTAC+CGG + chr6_4:468434-468453 None:intergenic 20.0%
!!! TGTGATTTATAATTTTTCTC+CGG - chr6_4:468689-468708 Msa0969070:CDS 20.0%
!! ATCATAATTGAAAACAAAAC+CGG + chr6_4:468711-468730 None:intergenic 20.0%
!! AAAAGCTAGAATGAAATTAA+GGG + chr6_4:469596-469615 None:intergenic 20.0%
! AAAATGTGATCTATAATAGC+TGG + chr6_4:467924-467943 None:intergenic 25.0%
! GACACATTATAGATTAACAT+TGG - chr6_4:468000-468019 Msa0969070:three_prime_UTR 25.0%
!!! ATTGGAATATACCATTTTTC+AGG - chr6_4:468018-468037 Msa0969070:three_prime_UTR 25.0%
! TGATATTATTATCCTATGCT+TGG - chr6_4:468446-468465 Msa0969070:CDS 25.0%
! GATATTATTATCCTATGCTT+GGG - chr6_4:468447-468466 Msa0969070:CDS 25.0%
! CAAATAAAAAACAAACCTGT+TGG + chr6_4:469365-469384 None:intergenic 25.0%
! CAAAAGCTAGAATGAAATTA+AGG + chr6_4:469597-469616 None:intergenic 25.0%
! AAAATGTGATCTATAATAGC+TGG + chr6_4:467924-467943 None:intergenic 25.0%
! GACACATTATAGATTAACAT+TGG - chr6_4:468000-468019 Msa0969070:three_prime_UTR 25.0%
!!! ATTGGAATATACCATTTTTC+AGG - chr6_4:468018-468037 Msa0969070:three_prime_UTR 25.0%
! TGATATTATTATCCTATGCT+TGG - chr6_4:468446-468465 Msa0969070:CDS 25.0%
! GATATTATTATCCTATGCTT+GGG - chr6_4:468447-468466 Msa0969070:CDS 25.0%
! CAAATAAAAAACAAACCTGT+TGG + chr6_4:469365-469384 None:intergenic 25.0%
! CAAAAGCTAGAATGAAATTA+AGG + chr6_4:469597-469616 None:intergenic 25.0%
TAACAATACCATGCTCAATT+GGG + chr6_4:468195-468214 None:intergenic 30.0%
GAAAGTCTCAAACATGATTT+GGG + chr6_4:468347-468366 None:intergenic 30.0%
TGAAAGTCTCAAACATGATT+TGG + chr6_4:468348-468367 None:intergenic 30.0%
! ATCTGTTCGTGTAAAAGTAT+AGG + chr6_4:468574-468593 None:intergenic 30.0%
GAATAGTTATTTATGCCTCT+TGG + chr6_4:468644-468663 None:intergenic 30.0%
!! AATTCGACTTGGAGAATATA+AGG + chr6_4:468666-468685 None:intergenic 30.0%
AAATCACAATGAATTCGACT+TGG + chr6_4:468677-468696 None:intergenic 30.0%
!! TATTTTTGCAGGTATTGTGT+TGG - chr6_4:468744-468763 Msa0969070:CDS 30.0%
! TTTTCATCATGTAATCAGTC+AGG + chr6_4:468861-468880 None:intergenic 30.0%
TTTCATTATGGAGTTGTAAG+TGG + chr6_4:469139-469158 None:intergenic 30.0%
GTCAACATCACATTTCATTA+TGG + chr6_4:469151-469170 None:intergenic 30.0%
TAAAAAACAAACCTGTTGGA+AGG + chr6_4:469361-469380 None:intergenic 30.0%
TTCTAAATTGTCTGAGCAAT+AGG - chr6_4:469539-469558 Msa0969070:intron 30.0%
TCTAAATTGTCTGAGCAATA+GGG - chr6_4:469540-469559 Msa0969070:intron 30.0%
AATAGGGTTATTGAAGGAAA+AGG - chr6_4:469556-469575 Msa0969070:intron 30.0%
TAACAATACCATGCTCAATT+GGG + chr6_4:468195-468214 None:intergenic 30.0%
GAAAGTCTCAAACATGATTT+GGG + chr6_4:468347-468366 None:intergenic 30.0%
TGAAAGTCTCAAACATGATT+TGG + chr6_4:468348-468367 None:intergenic 30.0%
! ATCTGTTCGTGTAAAAGTAT+AGG + chr6_4:468574-468593 None:intergenic 30.0%
GAATAGTTATTTATGCCTCT+TGG + chr6_4:468644-468663 None:intergenic 30.0%
!! AATTCGACTTGGAGAATATA+AGG + chr6_4:468666-468685 None:intergenic 30.0%
AAATCACAATGAATTCGACT+TGG + chr6_4:468677-468696 None:intergenic 30.0%
!! TATTTTTGCAGGTATTGTGT+TGG - chr6_4:468744-468763 Msa0969070:CDS 30.0%
! TTTTCATCATGTAATCAGTC+AGG + chr6_4:468861-468880 None:intergenic 30.0%
TTTCATTATGGAGTTGTAAG+TGG + chr6_4:469139-469158 None:intergenic 30.0%
GTCAACATCACATTTCATTA+TGG + chr6_4:469151-469170 None:intergenic 30.0%
TAAAAAACAAACCTGTTGGA+AGG + chr6_4:469361-469380 None:intergenic 30.0%
TTCTAAATTGTCTGAGCAAT+AGG - chr6_4:469539-469558 Msa0969070:intron 30.0%
TCTAAATTGTCTGAGCAATA+GGG - chr6_4:469540-469559 Msa0969070:intron 30.0%
AATAGGGTTATTGAAGGAAA+AGG - chr6_4:469556-469575 Msa0969070:intron 30.0%
CAAACCATACTAGAAGAAGA+TGG - chr6_4:467839-467858 Msa0969070:three_prime_UTR 35.0%
! TCTTGTTTGTGACAATGGAA+CGG - chr6_4:467884-467903 Msa0969070:three_prime_UTR 35.0%
!!! ATTTTTTGTTCTCTGCCTTG+TGG - chr6_4:467962-467981 Msa0969070:three_prime_UTR 35.0%
ATATGAAGCTATTCACCACA+AGG + chr6_4:467980-467999 None:intergenic 35.0%
!!! GAATATACCATTTTTCAGGC+AGG - chr6_4:468022-468041 Msa0969070:exon 35.0%
! CACCAACATATGCATCTTTT+TGG + chr6_4:468132-468151 None:intergenic 35.0%
CTAACAATACCATGCTCAAT+TGG + chr6_4:468196-468215 None:intergenic 35.0%
AGCATGGTATTGTTAGCAAT+TGG - chr6_4:468200-468219 Msa0969070:intron 35.0%
GCATGGTATTGTTAGCAATT+GGG - chr6_4:468201-468220 Msa0969070:intron 35.0%
ATCCTATGCTTGGGTTTAAT+TGG - chr6_4:468456-468475 Msa0969070:CDS 35.0%
AGATTGAGACTGACAATATG+AGG - chr6_4:468518-468537 Msa0969070:CDS 35.0%
! CAATTTTCTCATCAACCAAG+AGG - chr6_4:468626-468645 Msa0969070:CDS 35.0%
ATGAAAATTCTGACAGAACG+TGG - chr6_4:468874-468893 Msa0969070:intron 35.0%
TGAAATGTGATGTTGACATC+AGG - chr6_4:469154-469173 Msa0969070:CDS 35.0%
AAAGGACAATGTTACCATAC+AGG + chr6_4:469185-469204 None:intergenic 35.0%
TATGGTAACATTGTCCTTTC+AGG - chr6_4:469186-469205 Msa0969070:CDS 35.0%
!!! TCTAGCTTTTGTTATTCTCC+AGG - chr6_4:469606-469625 Msa0969070:intron 35.0%
ATCGTTTGACAATAAACTCC+TGG + chr6_4:469627-469646 None:intergenic 35.0%
CAAACCATACTAGAAGAAGA+TGG - chr6_4:467839-467858 Msa0969070:three_prime_UTR 35.0%
! TCTTGTTTGTGACAATGGAA+CGG - chr6_4:467884-467903 Msa0969070:three_prime_UTR 35.0%
!!! ATTTTTTGTTCTCTGCCTTG+TGG - chr6_4:467962-467981 Msa0969070:three_prime_UTR 35.0%
ATATGAAGCTATTCACCACA+AGG + chr6_4:467980-467999 None:intergenic 35.0%
!!! GAATATACCATTTTTCAGGC+AGG - chr6_4:468022-468041 Msa0969070:exon 35.0%
! CACCAACATATGCATCTTTT+TGG + chr6_4:468132-468151 None:intergenic 35.0%
CTAACAATACCATGCTCAAT+TGG + chr6_4:468196-468215 None:intergenic 35.0%
AGCATGGTATTGTTAGCAAT+TGG - chr6_4:468200-468219 Msa0969070:intron 35.0%
GCATGGTATTGTTAGCAATT+GGG - chr6_4:468201-468220 Msa0969070:intron 35.0%
ATCCTATGCTTGGGTTTAAT+TGG - chr6_4:468456-468475 Msa0969070:CDS 35.0%
AGATTGAGACTGACAATATG+AGG - chr6_4:468518-468537 Msa0969070:CDS 35.0%
! CAATTTTCTCATCAACCAAG+AGG - chr6_4:468626-468645 Msa0969070:CDS 35.0%
ATGAAAATTCTGACAGAACG+TGG - chr6_4:468874-468893 Msa0969070:intron 35.0%
TGAAATGTGATGTTGACATC+AGG - chr6_4:469154-469173 Msa0969070:CDS 35.0%
AAAGGACAATGTTACCATAC+AGG + chr6_4:469185-469204 None:intergenic 35.0%
TATGGTAACATTGTCCTTTC+AGG - chr6_4:469186-469205 Msa0969070:CDS 35.0%
!!! TCTAGCTTTTGTTATTCTCC+AGG - chr6_4:469606-469625 Msa0969070:intron 35.0%
ATCGTTTGACAATAAACTCC+TGG + chr6_4:469627-469646 None:intergenic 35.0%
!! AGTATGGTTTGTTGATCAGC+TGG + chr6_4:467830-467849 None:intergenic 40.0%
TCTGCCATCTTCTTCTAGTA+TGG + chr6_4:467846-467865 None:intergenic 40.0%
! CAACCTCTTGTTTGTGACAA+TGG - chr6_4:467879-467898 Msa0969070:three_prime_UTR 40.0%
GTTCCATTGTCACAAACAAG+AGG + chr6_4:467885-467904 None:intergenic 40.0%
CTTGTTTGTGACAATGGAAC+GGG - chr6_4:467885-467904 Msa0969070:three_prime_UTR 40.0%
!! TACTGGTGTTATGGTTGGTA+TGG - chr6_4:468105-468124 Msa0969070:intron 40.0%
!! ACTGGTGTTATGGTTGGTAT+GGG - chr6_4:468106-468125 Msa0969070:intron 40.0%
GGCCAAAAAGATGCATATGT+TGG - chr6_4:468127-468146 Msa0969070:intron 40.0%
!! AGATGCATATGTTGGTGATG+AGG - chr6_4:468135-468154 Msa0969070:intron 40.0%
TGTTAGCAATTGGGATGACA+TGG - chr6_4:468210-468229 Msa0969070:intron 40.0%
GGGATGACATGGAAAAGATT+TGG - chr6_4:468221-468240 Msa0969070:CDS 40.0%
GACACGAAGCTCATTATAGA+AGG + chr6_4:468254-468273 None:intergenic 40.0%
TAAGAGAACTGGATGCTCTT+CGG + chr6_4:468281-468300 None:intergenic 40.0%
AGAAGCTCCTCTTAATCCAA+AGG - chr6_4:468303-468322 Msa0969070:CDS 40.0%
TGCCAATTAAACCCAAGCAT+AGG + chr6_4:468461-468480 None:intergenic 40.0%
! ACCATAAGCTAGCTTATCCA+TGG - chr6_4:468488-468507 Msa0969070:CDS 40.0%
! TCCATGGATAAGCTAGCTTA+TGG + chr6_4:468492-468511 None:intergenic 40.0%
GTCTCAATCTAAAAGCTCCA+TGG + chr6_4:468508-468527 None:intergenic 40.0%
AACTTGTACTTTGTGTGAGC+TGG - chr6_4:468542-468561 Msa0969070:CDS 40.0%
ATTGTGTTGGATTCTGGTGA+TGG - chr6_4:468757-468776 Msa0969070:CDS 40.0%
TGAAATTGTGAGGGACATGA+AGG - chr6_4:468924-468943 Msa0969070:intron 40.0%
TAGCTCTTGCTCATAGTCAA+GGG + chr6_4:468968-468987 None:intergenic 40.0%
TTATACCAACCATCCATGGT+GGG - chr6_4:469087-469106 Msa0969070:intron 40.0%
CATTGCTGATAGAATGAGCA+AGG - chr6_4:469230-469249 Msa0969070:CDS 40.0%
ACCTTGATCTTCATGCTACT+GGG + chr6_4:469273-469292 None:intergenic 40.0%
! AGAAAGTACAGTGTCTGGAT+TGG - chr6_4:469309-469328 Msa0969070:CDS 40.0%
CACTTCCTATGCACAATTGA+TGG + chr6_4:469518-469537 None:intergenic 40.0%
CTGAGCAATAGGGTTATTGA+AGG - chr6_4:469550-469569 Msa0969070:intron 40.0%
!! AGTATGGTTTGTTGATCAGC+TGG + chr6_4:467830-467849 None:intergenic 40.0%
TCTGCCATCTTCTTCTAGTA+TGG + chr6_4:467846-467865 None:intergenic 40.0%
! CAACCTCTTGTTTGTGACAA+TGG - chr6_4:467879-467898 Msa0969070:three_prime_UTR 40.0%
GTTCCATTGTCACAAACAAG+AGG + chr6_4:467885-467904 None:intergenic 40.0%
CTTGTTTGTGACAATGGAAC+GGG - chr6_4:467885-467904 Msa0969070:three_prime_UTR 40.0%
!! TACTGGTGTTATGGTTGGTA+TGG - chr6_4:468105-468124 Msa0969070:intron 40.0%
!! ACTGGTGTTATGGTTGGTAT+GGG - chr6_4:468106-468125 Msa0969070:intron 40.0%
GGCCAAAAAGATGCATATGT+TGG - chr6_4:468127-468146 Msa0969070:intron 40.0%
!! AGATGCATATGTTGGTGATG+AGG - chr6_4:468135-468154 Msa0969070:intron 40.0%
TGTTAGCAATTGGGATGACA+TGG - chr6_4:468210-468229 Msa0969070:intron 40.0%
GGGATGACATGGAAAAGATT+TGG - chr6_4:468221-468240 Msa0969070:CDS 40.0%
GACACGAAGCTCATTATAGA+AGG + chr6_4:468254-468273 None:intergenic 40.0%
TAAGAGAACTGGATGCTCTT+CGG + chr6_4:468281-468300 None:intergenic 40.0%
AGAAGCTCCTCTTAATCCAA+AGG - chr6_4:468303-468322 Msa0969070:CDS 40.0%
TGCCAATTAAACCCAAGCAT+AGG + chr6_4:468461-468480 None:intergenic 40.0%
! ACCATAAGCTAGCTTATCCA+TGG - chr6_4:468488-468507 Msa0969070:CDS 40.0%
! TCCATGGATAAGCTAGCTTA+TGG + chr6_4:468492-468511 None:intergenic 40.0%
GTCTCAATCTAAAAGCTCCA+TGG + chr6_4:468508-468527 None:intergenic 40.0%
AACTTGTACTTTGTGTGAGC+TGG - chr6_4:468542-468561 Msa0969070:CDS 40.0%
ATTGTGTTGGATTCTGGTGA+TGG - chr6_4:468757-468776 Msa0969070:CDS 40.0%
TGAAATTGTGAGGGACATGA+AGG - chr6_4:468924-468943 Msa0969070:intron 40.0%
TAGCTCTTGCTCATAGTCAA+GGG + chr6_4:468968-468987 None:intergenic 40.0%
TTATACCAACCATCCATGGT+GGG - chr6_4:469087-469106 Msa0969070:intron 40.0%
CATTGCTGATAGAATGAGCA+AGG - chr6_4:469230-469249 Msa0969070:CDS 40.0%
ACCTTGATCTTCATGCTACT+GGG + chr6_4:469273-469292 None:intergenic 40.0%
! AGAAAGTACAGTGTCTGGAT+TGG - chr6_4:469309-469328 Msa0969070:CDS 40.0%
CACTTCCTATGCACAATTGA+TGG + chr6_4:469518-469537 None:intergenic 40.0%
CTGAGCAATAGGGTTATTGA+AGG - chr6_4:469550-469569 Msa0969070:intron 40.0%
TTGTGACAATGGAACGGGAA+TGG - chr6_4:467890-467909 Msa0969070:three_prime_UTR 45.0%
AGCAAAGCCTGCCTGAAAAA+TGG + chr6_4:468032-468051 None:intergenic 45.0%
!!! ATTTTTCAGGCAGGCTTTGC+TGG - chr6_4:468031-468050 Msa0969070:exon 45.0%
ACCAACAATGCTGGGAAACA+CGG + chr6_4:468074-468093 None:intergenic 45.0%
! TCCTCGTCATACTGGTGTTA+TGG - chr6_4:468096-468115 Msa0969070:intron 45.0%
ACCATAACACCAGTATGACG+AGG + chr6_4:468100-468119 None:intergenic 45.0%
!! CGTCATACTGGTGTTATGGT+TGG - chr6_4:468100-468119 Msa0969070:intron 45.0%
GATGAGGCACAATCTAAACG+TGG - chr6_4:468151-468170 Msa0969070:intron 45.0%
CAATTGGGTACTTGAGAGTG+AGG + chr6_4:468180-468199 None:intergenic 45.0%
CTCAAGTACCCAATTGAGCA+TGG - chr6_4:468184-468203 Msa0969070:intron 45.0%
AAGAGAACTGGATGCTCTTC+GGG + chr6_4:468280-468299 None:intergenic 45.0%
GGAGCTTCTGTTAAGAGAAC+TGG + chr6_4:468292-468311 None:intergenic 45.0%
!! CGATTGGCCTTTGGATTAAG+AGG + chr6_4:468313-468332 None:intergenic 45.0%
!! ATCTTCTCACGATTGGCCTT+TGG + chr6_4:468322-468341 None:intergenic 45.0%
TTGGGTCATCTTCTCACGAT+TGG + chr6_4:468329-468348 None:intergenic 45.0%
AATGGCCACATACATAGCAG+GGG + chr6_4:468374-468393 None:intergenic 45.0%
GAATGGCCACATACATAGCA+GGG + chr6_4:468375-468394 None:intergenic 45.0%
TGAATGGCCACATACATAGC+AGG + chr6_4:468376-468395 None:intergenic 45.0%
TGCTATGTATGTGGCCATTC+AGG - chr6_4:468375-468394 Msa0969070:CDS 45.0%
GAGTGAAAGAACAGCCTGAA+TGG + chr6_4:468392-468411 None:intergenic 45.0%
! GCAGGTATTGTGTTGGATTC+TGG - chr6_4:468751-468770 Msa0969070:CDS 45.0%
AGCCAAATCAAGACGAAGGA+TGG + chr6_4:468830-468849 None:intergenic 45.0%
!! ATCCTTCGTCTTGATTTGGC+TGG - chr6_4:468829-468848 Msa0969070:intron 45.0%
AGCAGAGCGTGAAATTGTGA+GGG - chr6_4:468915-468934 Msa0969070:intron 45.0%
! CTAGCTCTTGCTCATAGTCA+AGG + chr6_4:468969-468988 None:intergenic 45.0%
AAGAGCTATGAGTTGCCTGA+TGG - chr6_4:469018-469037 Msa0969070:intron 45.0%
AGAGCTATGAGTTGCCTGAT+GGG - chr6_4:469019-469038 Msa0969070:intron 45.0%
! ATAGTGATGACTTGCCCATC+AGG + chr6_4:469036-469055 None:intergenic 45.0%
GATGGGCAAGTCATCACTAT+TGG - chr6_4:469036-469055 Msa0969070:intron 45.0%
! GATGGTTGGTATAAGACCTC+TGG + chr6_4:469081-469100 None:intergenic 45.0%
! GGTCTTATACCAACCATCCA+TGG - chr6_4:469083-469102 Msa0969070:intron 45.0%
CTTATACCAACCATCCATGG+TGG - chr6_4:469086-469105 Msa0969070:intron 45.0%
GACATCAGGAAAGACCTGTA+TGG - chr6_4:469168-469187 Msa0969070:CDS 45.0%
GGTAACATTGTCCTTTCAGG+AGG - chr6_4:469189-469208 Msa0969070:CDS 45.0%
ACATGGTTGTACCTCCTGAA+AGG + chr6_4:469203-469222 None:intergenic 45.0%
ATCAGCAATGCCAGGAAACA+TGG + chr6_4:469220-469239 None:intergenic 45.0%
CTCATTCTATCAGCAATGCC+AGG + chr6_4:469228-469247 None:intergenic 45.0%
ACCCAGTAGCATGAAGATCA+AGG - chr6_4:469269-469288 Msa0969070:CDS 45.0%
CACCTTGATCTTCATGCTAC+TGG + chr6_4:469274-469293 None:intergenic 45.0%
CAGTAGCATGAAGATCAAGG+TGG - chr6_4:469272-469291 Msa0969070:CDS 45.0%
ACACTGTACTTTCTCTCAGG+CGG + chr6_4:469303-469322 None:intergenic 45.0%
CAGACACTGTACTTTCTCTC+AGG + chr6_4:469306-469325 None:intergenic 45.0%
! CTGAGAGAAAGTACAGTGTC+TGG - chr6_4:469304-469323 Msa0969070:CDS 45.0%
! AAGTACAGTGTCTGGATTGG+TGG - chr6_4:469312-469331 Msa0969070:CDS 45.0%
!! CTGGATTGGTGGTTCTATCT+TGG - chr6_4:469323-469342 Msa0969070:CDS 45.0%
!! AACCTGTTGGAAGGTGCTTA+GGG + chr6_4:469352-469371 None:intergenic 45.0%
!! AAACCTGTTGGAAGGTGCTT+AGG + chr6_4:469353-469372 None:intergenic 45.0%
CACATCTGCACACAAAGGAA+AGG + chr6_4:469464-469483 None:intergenic 45.0%
CTTTCCTTTGTGTGCAGATG+TGG - chr6_4:469462-469481 Msa0969070:CDS 45.0%
CAATCCACATCTGCACACAA+AGG + chr6_4:469469-469488 None:intergenic 45.0%
! TGTGCAGATGTGGATTGCAA+AGG - chr6_4:469472-469491 Msa0969070:CDS 45.0%
AAGGCTGAGTATGATGAGTC+TGG - chr6_4:469491-469510 Msa0969070:CDS 45.0%
CTGGACCATCAATTGTGCAT+AGG - chr6_4:469510-469529 Msa0969070:CDS 45.0%
TTGTGACAATGGAACGGGAA+TGG - chr6_4:467890-467909 Msa0969070:three_prime_UTR 45.0%
AGCAAAGCCTGCCTGAAAAA+TGG + chr6_4:468032-468051 None:intergenic 45.0%
!!! ATTTTTCAGGCAGGCTTTGC+TGG - chr6_4:468031-468050 Msa0969070:exon 45.0%
ACCAACAATGCTGGGAAACA+CGG + chr6_4:468074-468093 None:intergenic 45.0%
! TCCTCGTCATACTGGTGTTA+TGG - chr6_4:468096-468115 Msa0969070:intron 45.0%
ACCATAACACCAGTATGACG+AGG + chr6_4:468100-468119 None:intergenic 45.0%
!! CGTCATACTGGTGTTATGGT+TGG - chr6_4:468100-468119 Msa0969070:intron 45.0%
GATGAGGCACAATCTAAACG+TGG - chr6_4:468151-468170 Msa0969070:intron 45.0%
CAATTGGGTACTTGAGAGTG+AGG + chr6_4:468180-468199 None:intergenic 45.0%
CTCAAGTACCCAATTGAGCA+TGG - chr6_4:468184-468203 Msa0969070:intron 45.0%
AAGAGAACTGGATGCTCTTC+GGG + chr6_4:468280-468299 None:intergenic 45.0%
GGAGCTTCTGTTAAGAGAAC+TGG + chr6_4:468292-468311 None:intergenic 45.0%
!! CGATTGGCCTTTGGATTAAG+AGG + chr6_4:468313-468332 None:intergenic 45.0%
!! ATCTTCTCACGATTGGCCTT+TGG + chr6_4:468322-468341 None:intergenic 45.0%
TTGGGTCATCTTCTCACGAT+TGG + chr6_4:468329-468348 None:intergenic 45.0%
AATGGCCACATACATAGCAG+GGG + chr6_4:468374-468393 None:intergenic 45.0%
GAATGGCCACATACATAGCA+GGG + chr6_4:468375-468394 None:intergenic 45.0%
TGAATGGCCACATACATAGC+AGG + chr6_4:468376-468395 None:intergenic 45.0%
TGCTATGTATGTGGCCATTC+AGG - chr6_4:468375-468394 Msa0969070:CDS 45.0%
GAGTGAAAGAACAGCCTGAA+TGG + chr6_4:468392-468411 None:intergenic 45.0%
! GCAGGTATTGTGTTGGATTC+TGG - chr6_4:468751-468770 Msa0969070:CDS 45.0%
AGCCAAATCAAGACGAAGGA+TGG + chr6_4:468830-468849 None:intergenic 45.0%
!! ATCCTTCGTCTTGATTTGGC+TGG - chr6_4:468829-468848 Msa0969070:intron 45.0%
AGCAGAGCGTGAAATTGTGA+GGG - chr6_4:468915-468934 Msa0969070:intron 45.0%
! CTAGCTCTTGCTCATAGTCA+AGG + chr6_4:468969-468988 None:intergenic 45.0%
AAGAGCTATGAGTTGCCTGA+TGG - chr6_4:469018-469037 Msa0969070:intron 45.0%
AGAGCTATGAGTTGCCTGAT+GGG - chr6_4:469019-469038 Msa0969070:intron 45.0%
! ATAGTGATGACTTGCCCATC+AGG + chr6_4:469036-469055 None:intergenic 45.0%
GATGGGCAAGTCATCACTAT+TGG - chr6_4:469036-469055 Msa0969070:intron 45.0%
! GATGGTTGGTATAAGACCTC+TGG + chr6_4:469081-469100 None:intergenic 45.0%
! GGTCTTATACCAACCATCCA+TGG - chr6_4:469083-469102 Msa0969070:intron 45.0%
CTTATACCAACCATCCATGG+TGG - chr6_4:469086-469105 Msa0969070:intron 45.0%
GACATCAGGAAAGACCTGTA+TGG - chr6_4:469168-469187 Msa0969070:CDS 45.0%
GGTAACATTGTCCTTTCAGG+AGG - chr6_4:469189-469208 Msa0969070:CDS 45.0%
ACATGGTTGTACCTCCTGAA+AGG + chr6_4:469203-469222 None:intergenic 45.0%
ATCAGCAATGCCAGGAAACA+TGG + chr6_4:469220-469239 None:intergenic 45.0%
CTCATTCTATCAGCAATGCC+AGG + chr6_4:469228-469247 None:intergenic 45.0%
ACCCAGTAGCATGAAGATCA+AGG - chr6_4:469269-469288 Msa0969070:CDS 45.0%
CACCTTGATCTTCATGCTAC+TGG + chr6_4:469274-469293 None:intergenic 45.0%
CAGTAGCATGAAGATCAAGG+TGG - chr6_4:469272-469291 Msa0969070:CDS 45.0%
ACACTGTACTTTCTCTCAGG+CGG + chr6_4:469303-469322 None:intergenic 45.0%
CAGACACTGTACTTTCTCTC+AGG + chr6_4:469306-469325 None:intergenic 45.0%
! CTGAGAGAAAGTACAGTGTC+TGG - chr6_4:469304-469323 Msa0969070:CDS 45.0%
! AAGTACAGTGTCTGGATTGG+TGG - chr6_4:469312-469331 Msa0969070:CDS 45.0%
!! CTGGATTGGTGGTTCTATCT+TGG - chr6_4:469323-469342 Msa0969070:CDS 45.0%
!! AACCTGTTGGAAGGTGCTTA+GGG + chr6_4:469352-469371 None:intergenic 45.0%
!! AAACCTGTTGGAAGGTGCTT+AGG + chr6_4:469353-469372 None:intergenic 45.0%
CACATCTGCACACAAAGGAA+AGG + chr6_4:469464-469483 None:intergenic 45.0%
CTTTCCTTTGTGTGCAGATG+TGG - chr6_4:469462-469481 Msa0969070:CDS 45.0%
CAATCCACATCTGCACACAA+AGG + chr6_4:469469-469488 None:intergenic 45.0%
! TGTGCAGATGTGGATTGCAA+AGG - chr6_4:469472-469491 Msa0969070:CDS 45.0%
AAGGCTGAGTATGATGAGTC+TGG - chr6_4:469491-469510 Msa0969070:CDS 45.0%
CTGGACCATCAATTGTGCAT+AGG - chr6_4:469510-469529 Msa0969070:CDS 45.0%
CAATGGAACGGGAATGGTCA+AGG - chr6_4:467896-467915 Msa0969070:three_prime_UTR 50.0%
AGAGAACTGGATGCTCTTCG+GGG + chr6_4:468279-468298 None:intergenic 50.0%
CAATGCCCCTGCTATGTATG+TGG - chr6_4:468366-468385 Msa0969070:CDS 50.0%
GTTCTTTCACTCTACGCCAG+TGG - chr6_4:468400-468419 Msa0969070:CDS 50.0%
! ATTACCGGTTGTACGACCAC+TGG + chr6_4:468419-468438 None:intergenic 50.0%
CACACAGTCCCTATCTACGA+GGG - chr6_4:468787-468806 Msa0969070:CDS 50.0%
GGGCATAACCCTCGTAGATA+GGG + chr6_4:468798-468817 None:intergenic 50.0%
AGGGCATAACCCTCGTAGAT+AGG + chr6_4:468799-468818 None:intergenic 50.0%
CGCCATCCTTCGTCTTGATT+TGG - chr6_4:468825-468844 Msa0969070:intron 50.0%
GACCAGCCAAATCAAGACGA+AGG + chr6_4:468834-468853 None:intergenic 50.0%
AATTTCACGCTCTGCTGAGG+TGG + chr6_4:468911-468930 None:intergenic 50.0%
CACAATTTCACGCTCTGCTG+AGG + chr6_4:468914-468933 None:intergenic 50.0%
CAGCAGAGCGTGAAATTGTG+AGG - chr6_4:468914-468933 Msa0969070:intron 50.0%
GAGGGACATGAAGGAAAAGC+TGG - chr6_4:468933-468952 Msa0969070:intron 50.0%
!! CTATTGGCGCTGAGCGTTTT+AGG - chr6_4:469052-469071 Msa0969070:intron 50.0%
!! TGAGCGTTTTAGGTGTCCAG+AGG - chr6_4:469062-469081 Msa0969070:intron 50.0%
! GGAGGTACAACCATGTTTCC+TGG - chr6_4:469207-469226 Msa0969070:CDS 50.0%
ATCCCTAAGCACCTTCCAAC+AGG - chr6_4:469347-469366 Msa0969070:CDS 50.0%
CAATGGAACGGGAATGGTCA+AGG - chr6_4:467896-467915 Msa0969070:three_prime_UTR 50.0%
AGAGAACTGGATGCTCTTCG+GGG + chr6_4:468279-468298 None:intergenic 50.0%
CAATGCCCCTGCTATGTATG+TGG - chr6_4:468366-468385 Msa0969070:CDS 50.0%
GTTCTTTCACTCTACGCCAG+TGG - chr6_4:468400-468419 Msa0969070:CDS 50.0%
! ATTACCGGTTGTACGACCAC+TGG + chr6_4:468419-468438 None:intergenic 50.0%
CACACAGTCCCTATCTACGA+GGG - chr6_4:468787-468806 Msa0969070:CDS 50.0%
GGGCATAACCCTCGTAGATA+GGG + chr6_4:468798-468817 None:intergenic 50.0%
AGGGCATAACCCTCGTAGAT+AGG + chr6_4:468799-468818 None:intergenic 50.0%
CGCCATCCTTCGTCTTGATT+TGG - chr6_4:468825-468844 Msa0969070:intron 50.0%
GACCAGCCAAATCAAGACGA+AGG + chr6_4:468834-468853 None:intergenic 50.0%
AATTTCACGCTCTGCTGAGG+TGG + chr6_4:468911-468930 None:intergenic 50.0%
CACAATTTCACGCTCTGCTG+AGG + chr6_4:468914-468933 None:intergenic 50.0%
CAGCAGAGCGTGAAATTGTG+AGG - chr6_4:468914-468933 Msa0969070:intron 50.0%
GAGGGACATGAAGGAAAAGC+TGG - chr6_4:468933-468952 Msa0969070:intron 50.0%
!! CTATTGGCGCTGAGCGTTTT+AGG - chr6_4:469052-469071 Msa0969070:intron 50.0%
!! TGAGCGTTTTAGGTGTCCAG+AGG - chr6_4:469062-469081 Msa0969070:intron 50.0%
! GGAGGTACAACCATGTTTCC+TGG - chr6_4:469207-469226 Msa0969070:CDS 50.0%
ATCCCTAAGCACCTTCCAAC+AGG - chr6_4:469347-469366 Msa0969070:CDS 50.0%
GAAGAAGATGGCAGACGCTG+AGG - chr6_4:467851-467870 Msa0969070:three_prime_UTR 55.0%
GCCGTGTTTCCCAGCATTGT+TGG - chr6_4:468070-468089 Msa0969070:CDS 55.0%
CGAGGACGACCAACAATGCT+GGG + chr6_4:468082-468101 None:intergenic 55.0%
ACGAGGACGACCAACAATGC+TGG + chr6_4:468083-468102 None:intergenic 55.0%
GTTGGTCGTCCTCGTCATAC+TGG - chr6_4:468088-468107 Msa0969070:intron 55.0%
GAGAACTGGATGCTCTTCGG+GGG + chr6_4:468278-468297 None:intergenic 55.0%
TACGCCAGTGGTCGTACAAC+CGG - chr6_4:468412-468431 Msa0969070:CDS 55.0%
CCTCGTAGATAGGGACTGTG+TGG + chr6_4:468789-468808 None:intergenic 55.0%
CCACACAGTCCCTATCTACG+AGG - chr6_4:468786-468805 Msa0969070:CDS 55.0%
CAAGACGAAGGATGGCGTGT+GGG + chr6_4:468822-468841 None:intergenic 55.0%
TCAAGACGAAGGATGGCGTG+TGG + chr6_4:468823-468842 None:intergenic 55.0%
ATCCAAGACCAGCTCTGCAG+TGG - chr6_4:468993-469012 Msa0969070:intron 55.0%
CCATTCCCACCATGGATGGT+TGG + chr6_4:469095-469114 None:intergenic 55.0%
! CCAACCATCCATGGTGGGAA+TGG - chr6_4:469092-469111 Msa0969070:intron 55.0%
GCTTCCATTCCCACCATGGA+TGG + chr6_4:469099-469118 None:intergenic 55.0%
TGCAGCTTCCATTCCCACCA+TGG + chr6_4:469103-469122 None:intergenic 55.0%
! ATGGTGGGAATGGAAGCTGC+AGG - chr6_4:469102-469121 Msa0969070:intron 55.0%
GAAGAAGATGGCAGACGCTG+AGG - chr6_4:467851-467870 Msa0969070:three_prime_UTR 55.0%
GCCGTGTTTCCCAGCATTGT+TGG - chr6_4:468070-468089 Msa0969070:CDS 55.0%
CGAGGACGACCAACAATGCT+GGG + chr6_4:468082-468101 None:intergenic 55.0%
ACGAGGACGACCAACAATGC+TGG + chr6_4:468083-468102 None:intergenic 55.0%
GTTGGTCGTCCTCGTCATAC+TGG - chr6_4:468088-468107 Msa0969070:intron 55.0%
GAGAACTGGATGCTCTTCGG+GGG + chr6_4:468278-468297 None:intergenic 55.0%
TACGCCAGTGGTCGTACAAC+CGG - chr6_4:468412-468431 Msa0969070:CDS 55.0%
CCTCGTAGATAGGGACTGTG+TGG + chr6_4:468789-468808 None:intergenic 55.0%
CCACACAGTCCCTATCTACG+AGG - chr6_4:468786-468805 Msa0969070:CDS 55.0%
CAAGACGAAGGATGGCGTGT+GGG + chr6_4:468822-468841 None:intergenic 55.0%
TCAAGACGAAGGATGGCGTG+TGG + chr6_4:468823-468842 None:intergenic 55.0%
ATCCAAGACCAGCTCTGCAG+TGG - chr6_4:468993-469012 Msa0969070:intron 55.0%
CCATTCCCACCATGGATGGT+TGG + chr6_4:469095-469114 None:intergenic 55.0%
! CCAACCATCCATGGTGGGAA+TGG - chr6_4:469092-469111 Msa0969070:intron 55.0%
GCTTCCATTCCCACCATGGA+TGG + chr6_4:469099-469118 None:intergenic 55.0%
TGCAGCTTCCATTCCCACCA+TGG + chr6_4:469103-469122 None:intergenic 55.0%
! ATGGTGGGAATGGAAGCTGC+AGG - chr6_4:469102-469121 Msa0969070:intron 55.0%
ATGCTGGGAAACACGGCACG+CGG + chr6_4:468067-468086 None:intergenic 60.0%
ACGAAGGATGGCGTGTGGGA+GGG + chr6_4:468818-468837 None:intergenic 60.0%
! CTCCACTGCAGAGCTGGTCT+TGG + chr6_4:468998-469017 None:intergenic 60.0%
GCTCTTCTCCACTGCAGAGC+TGG + chr6_4:469004-469023 None:intergenic 60.0%
ATGCTGGGAAACACGGCACG+CGG + chr6_4:468067-468086 None:intergenic 60.0%
ACGAAGGATGGCGTGTGGGA+GGG + chr6_4:468818-468837 None:intergenic 60.0%
! CTCCACTGCAGAGCTGGTCT+TGG + chr6_4:468998-469017 None:intergenic 60.0%
GCTCTTCTCCACTGCAGAGC+TGG + chr6_4:469004-469023 None:intergenic 60.0%
GACGAAGGATGGCGTGTGGG+AGG + chr6_4:468819-468838 None:intergenic 65.0%
GACGAAGGATGGCGTGTGGG+AGG + chr6_4:468819-468838 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 467825 469758 467825 ID=Msa0969070;Name=Msa0969070
chr6_4 mRNA 467825 469758 467825 ID=Msa0969070-mRNA-1;Parent=Msa0969070;Name=Msa0969070-mRNA-1;_AED=0.05;_eAED=0.05;_QI=33|1|1|1|1|1|4|214|377
chr6_4 exon 467825 468104 467825 ID=Msa0969070-mRNA-1:exon:266;Parent=Msa0969070-mRNA-1
chr6_4 exon 468215 468828 468215 ID=Msa0969070-mRNA-1:exon:265;Parent=Msa0969070-mRNA-1
chr6_4 exon 469150 469543 469150 ID=Msa0969070-mRNA-1:exon:264;Parent=Msa0969070-mRNA-1
chr6_4 exon 469666 469758 469666 ID=Msa0969070-mRNA-1:exon:263;Parent=Msa0969070-mRNA-1
chr6_4 five_prime_UTR 469726 469758 469726 ID=Msa0969070-mRNA-1:five_prime_utr;Parent=Msa0969070-mRNA-1
chr6_4 CDS 469666 469725 469666 ID=Msa0969070-mRNA-1:cds;Parent=Msa0969070-mRNA-1
chr6_4 CDS 469150 469543 469150 ID=Msa0969070-mRNA-1:cds;Parent=Msa0969070-mRNA-1
chr6_4 CDS 468215 468828 468215 ID=Msa0969070-mRNA-1:cds;Parent=Msa0969070-mRNA-1
chr6_4 CDS 468039 468104 468039 ID=Msa0969070-mRNA-1:cds;Parent=Msa0969070-mRNA-1
chr6_4 three_prime_UTR 467825 468038 467825 ID=Msa0969070-mRNA-1:three_prime_utr;Parent=Msa0969070-mRNA-1
Gene Sequence

>Msa0969070

ATGGCAGACGCTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACGGGAATGGTCAAGGCAGGCTTTGCTGGAGATGATGCACCGCGTGCCGTGTTTCCCAGCATTGTTGGTCGTCCTCGTCATACTGGTGTTATGGTTGGTATGGGCCAAAAAGATGCATATGTTGGTGATGAGGCACAATCTAAACGTGGTATCCTCACTCTCAAGTACCCAATTGAGCATGGTATTGTTAGCAATTGGGATGACATGGAAAAGATTTGGCATCATACCTTCTATAATGAGCTTCGTGTCGCCCCCGAAGAGCATCCAGTTCTCTTAACAGAAGCTCCTCTTAATCCAAAGGCCAATCGTGAGAAGATGACCCAAATCATGTTTGAGACTTTCAATGCCCCTGCTATGTATGTGGCCATTCAGGCTGTTCTTTCACTCTACGCCAGTGGTCGTACAACCGGTATTGTGTTGGATTCTGGTGATGGTGTCAGCCACACAGTCCCTATCTACGAGGGTTATGCCCTCCCACACGCCATCCTTCGTCTTGATTTGGCTGGTCGTGACCTGACTGATTACATGATGAAAATTCTGACAGAACGTGGTTATTCTTTTACCACCTCAGCAGAGCGTGAAATTGTGAGGGACATGAAGGAAAAGCTGGCTTACATTGCCCTTGACTATGAGCAAGAGCTAGAGACATCCAAGACCAGCTCTGCAGTGGAGAAGAGCTATGAGTTGCCTGATGGGCAAGTCATCACTATTGGCGCTGAGCGTTTTAGGTGTCCAGAGGTCTTATACCAACCATCCATGGTGGGAATGGAAGCTGCAGGAATTCATGAGACCACTTACAACTCCATAATGAAATGTGATGTTGACATCAGGAAAGACCTGTATGGTAACATTGTCCTTTCAGGAGGTACAACCATGTTTCCTGGCATTGCTGATAGAATGAGCAAGGAGATTTCTGCATTAGCACCCAGTAGCATGAAGATCAAGGTGGTAGCACCGCCTGAGAGAAAGTACAGTGTCTGGATTGGTGGTTCTATCTTGGCATCCCTAAGCACCTTCCAACAGATGTGGATTGCAAAGGCTGAGTATGATGAGTCTGGACCATCAATTGTGCATAGGAAGTGTTTCTAA
Protein sequence

>Msa0969070

MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLYQPSMVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF*