Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0975240 | XP_013468204.1 | 72.818 | 401 | 96 | 5 | 4 | 394 | 3 | 400 | 0.0 | 587 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0975240 | A0A072VKT8 | 72.818 | 401 | 96 | 5 | 4 | 394 | 3 | 400 | 0.0 | 587 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0975240 | Msa1200440 | 0.801944 | 7.090898e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0975240 | MtrunA17_Chr1g0181301 | 72.818 | 401 | 96 | 5 | 4 | 394 | 3 | 400 | 0.0 | 587 |
| Msa0975240 | MtrunA17_Chr5g0415931 | 52.672 | 393 | 166 | 8 | 5 | 393 | 6 | 382 | 4.73e-141 | 406 |
| Msa0975240 | MtrunA17_Chr5g0415901 | 46.667 | 390 | 141 | 8 | 5 | 392 | 4 | 328 | 2.30e-114 | 337 |
| Msa0975240 | MtrunA17_Chr1g0208731 | 43.216 | 398 | 166 | 11 | 1 | 392 | 1 | 344 | 3.78e-86 | 265 |
| Msa0975240 | MtrunA17_Chr5g0437231 | 48.571 | 315 | 133 | 10 | 5 | 318 | 4 | 290 | 2.47e-82 | 253 |
| Msa0975240 | MtrunA17_Chr7g0247701 | 40.291 | 412 | 184 | 17 | 1 | 392 | 1 | 370 | 9.09e-74 | 234 |
| Msa0975240 | MtrunA17_Chr7g0247731 | 40.476 | 420 | 172 | 16 | 1 | 394 | 1 | 368 | 1.82e-73 | 233 |
| Msa0975240 | MtrunA17_Chr7g0247721 | 39.486 | 428 | 169 | 18 | 1 | 394 | 39 | 410 | 3.11e-70 | 226 |
| Msa0975240 | MtrunA17_Chr5g0437241 | 41.754 | 285 | 132 | 6 | 80 | 361 | 1 | 254 | 1.55e-60 | 196 |
| Msa0975240 | MtrunA17_Chr6g0459631 | 80.357 | 112 | 18 | 1 | 117 | 224 | 41 | 152 | 3.66e-54 | 178 |
| Msa0975240 | MtrunA17_Chr6g0459631 | 79.032 | 62 | 13 | 0 | 333 | 394 | 149 | 210 | 4.04e-30 | 115 |
| Msa0975240 | MtrunA17_Chr7g0246641 | 42.671 | 307 | 129 | 15 | 95 | 394 | 4 | 270 | 6.02e-49 | 166 |
| Msa0975240 | MtrunA17_Chr1g0151451 | 45.274 | 201 | 83 | 5 | 1 | 190 | 1 | 185 | 1.16e-44 | 154 |
| Msa0975240 | MtrunA17_Chr3g0143621 | 27.249 | 389 | 229 | 17 | 3 | 366 | 21 | 380 | 1.29e-23 | 101 |
| Msa0975240 | MtrunA17_Chr7g0246651 | 36.517 | 178 | 93 | 6 | 95 | 263 | 45 | 211 | 1.15e-22 | 95.1 |
| Msa0975240 | MtrunA17_Chr7g0246661 | 37.594 | 133 | 65 | 3 | 176 | 301 | 8 | 129 | 1.33e-15 | 73.2 |
| Msa0975240 | MtrunA17_Chr8g0371101 | 25.700 | 393 | 222 | 16 | 2 | 366 | 3 | 353 | 9.88e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 76 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATGTCGGCTTCGTATTT+TGG | 0.208690 | 6_4:-8969290 | Msa0975240:CDS |
| AATGTTAAAGCTTGATAGTT+TGG | 0.243559 | 6_4:-8969351 | Msa0975240:CDS |
| TAAAAGCTGGACAAAAGTTT+TGG | 0.255927 | 6_4:-8969724 | Msa0975240:CDS |
| TATGTTGTAGTTGCAATTTA+TGG | 0.256703 | 6_4:-8969770 | Msa0975240:CDS |
| CCACAAAGCCTCTTGTTATA+AGG | 0.264739 | 6_4:+8969992 | None:intergenic |
| TAGGGTTATTATTGTAAGTT+TGG | 0.266002 | 6_4:+8969931 | None:intergenic |
| TGGCTTGTAAGGAAATTTAT+TGG | 0.269879 | 6_4:-8969485 | Msa0975240:CDS |
| TGTTATAAGGGAGTGGTAAT+TGG | 0.273748 | 6_4:+8970005 | None:intergenic |
| TTCATATCAAATGGTCCATT+AGG | 0.289459 | 6_4:+8969200 | None:intergenic |
| TATCGGCAAATCCTACAATT+AGG | 0.290712 | 6_4:-8969802 | Msa0975240:CDS |
| CTAACTCTTCTATATATATC+TGG | 0.344601 | 6_4:+8969857 | None:intergenic |
| TCATATCAAATGGTCCATTA+GGG | 0.347171 | 6_4:+8969201 | None:intergenic |
| TGAAGTGTATAAGTTGGAAT+TGG | 0.349342 | 6_4:-8969399 | Msa0975240:CDS |
| GTCAATGGAGGCAGTAGATT+GGG | 0.349372 | 6_4:-8970257 | None:intergenic |
| ATATATATCTGGCATGTAGA+TGG | 0.350445 | 6_4:+8969868 | None:intergenic |
| TCCTGATGTTGTTTCACCAT+GGG | 0.353820 | 6_4:-8969561 | Msa0975240:CDS |
| AGAACAAAGAGATGTTTATA+TGG | 0.371045 | 6_4:-8970055 | Msa0975240:CDS |
| CCTTATAACAAGAGGCTTTG+TGG | 0.380145 | 6_4:-8969992 | Msa0975240:CDS |
| ATGTTAAAGCTTGATAGTTT+GGG | 0.382709 | 6_4:-8969350 | Msa0975240:CDS |
| AAGATTTGAAGTGTATAAGT+TGG | 0.390550 | 6_4:-8969405 | Msa0975240:CDS |
| AGGGAGACTTGTGGCTTGTA+AGG | 0.407147 | 6_4:-8969496 | Msa0975240:CDS |
| GTACCGGATCCTTACCCTAA+TGG | 0.422878 | 6_4:-8969215 | Msa0975240:CDS |
| CACAAAGCCTCTTGTTATAA+GGG | 0.423159 | 6_4:+8969993 | None:intergenic |
| TCAGCGTGGTATGCAAGAAT+TGG | 0.424757 | 6_4:-8970165 | Msa0975240:CDS |
| TTGTGGTTCAAGTCATGGTT+GGG | 0.440074 | 6_4:-8969975 | Msa0975240:CDS |
| TGTCAATGGAGGCAGTAGAT+TGG | 0.445882 | 6_4:-8970258 | None:intergenic |
| TTATGAATGTAACGTTCATA+AGG | 0.448018 | 6_4:-8969831 | Msa0975240:CDS |
| TGTCTTGCTTTCATAAAAGC+TGG | 0.450654 | 6_4:-8969737 | Msa0975240:CDS |
| GAACAAAGAGATGTTTATAT+GGG | 0.454874 | 6_4:-8970054 | Msa0975240:CDS |
| AAAATCTATAATGTAAAAGA+TGG | 0.455567 | 6_4:-8969179 | Msa0975240:CDS |
| AGCTATCATTCCCACTGAAA+TGG | 0.463891 | 6_4:+8969086 | None:intergenic |
| TAATCGTGAGGCCTAATTGT+AGG | 0.471723 | 6_4:+8969791 | None:intergenic |
| TTTGTGGTTCAAGTCATGGT+TGG | 0.477178 | 6_4:-8969976 | Msa0975240:CDS |
| AGGCTTTGTGGTTCAAGTCA+TGG | 0.485655 | 6_4:-8969980 | Msa0975240:CDS |
| TTCCTGATGTTGTTTCACCA+TGG | 0.491679 | 6_4:-8969562 | Msa0975240:CDS |
| AGCATTGCAATTTCGAACAT+TGG | 0.498979 | 6_4:-8969145 | Msa0975240:CDS |
| TCATCATCAGTGTCATCATC+GGG | 0.504068 | 6_4:+8969458 | None:intergenic |
| TTCATCATCAGTGTCATCAT+CGG | 0.513248 | 6_4:+8969457 | None:intergenic |
| GGCATGTAGATGGGTGGTAG+AGG | 0.516014 | 6_4:+8969878 | None:intergenic |
| TTGATAACTAAACTTTGCAA+TGG | 0.525381 | 6_4:+8970138 | None:intergenic |
| CCCCATGGTGAAACAACATC+AGG | 0.529748 | 6_4:+8969560 | None:intergenic |
| AAGGGAGTGGTAATTGGAAG+TGG | 0.531731 | 6_4:+8970011 | None:intergenic |
| TGATTATTTCGAAGATGTAC+CGG | 0.540213 | 6_4:-8969231 | Msa0975240:CDS |
| CCTGATGTTGTTTCACCATG+GGG | 0.541176 | 6_4:-8969560 | Msa0975240:CDS |
| TCAAATGGTCCATTAGGGTA+AGG | 0.543154 | 6_4:+8969206 | None:intergenic |
| GGGTTCTTCCGCCATTTCAG+TGG | 0.545118 | 6_4:-8969097 | Msa0975240:CDS |
| GGTTCTTCCGCCATTTCAGT+GGG | 0.545364 | 6_4:-8969096 | Msa0975240:CDS |
| TACCACTCCCTTATAACAAG+AGG | 0.545416 | 6_4:-8970000 | Msa0975240:CDS |
| AGCCTCTTGTTATAAGGGAG+TGG | 0.552882 | 6_4:+8969998 | None:intergenic |
| TAGTCTATGCCGCAGGACGA+TGG | 0.556226 | 6_4:-8969646 | Msa0975240:CDS |
| TATATATCTGGCATGTAGAT+GGG | 0.560379 | 6_4:+8969869 | None:intergenic |
| GTAGATGGGTGGTAGAGGGA+TGG | 0.563925 | 6_4:+8969883 | None:intergenic |
| TTTGTGGGAATCATTAGCAT+AGG | 0.565295 | 6_4:+8970088 | None:intergenic |
| TCATGGTTGGGTAGCAAAGG+TGG | 0.565480 | 6_4:-8969963 | Msa0975240:CDS |
| CTGATGTTGTTTCACCATGG+GGG | 0.569033 | 6_4:-8969559 | Msa0975240:CDS |
| TGATGTTGTTTCACCATGGG+GGG | 0.582775 | 6_4:-8969558 | Msa0975240:CDS |
| CACGGATGCCACCTTCAGTG+TGG | 0.584838 | 6_4:-8969118 | Msa0975240:CDS |
| GGTCCATTAGGGTAAGGATC+CGG | 0.590185 | 6_4:+8969212 | None:intergenic |
| TAGTGATTCTGTATCTATGT+CGG | 0.590343 | 6_4:-8969303 | Msa0975240:CDS |
| AAGTCATGGTTGGGTAGCAA+AGG | 0.591114 | 6_4:-8969966 | Msa0975240:CDS |
| GATAGTAACTTGTCTAGTAG+TGG | 0.593839 | 6_4:-8969434 | Msa0975240:CDS |
| GCATGTAGATGGGTGGTAGA+GGG | 0.597842 | 6_4:+8969879 | None:intergenic |
| ATTTCGAACATTGGTTCACA+CGG | 0.602276 | 6_4:-8969136 | Msa0975240:CDS |
| AAAGGGTTAGTCTATGCCGC+AGG | 0.606406 | 6_4:-8969653 | Msa0975240:CDS |
| GGCGGAAGAACCCACACTGA+AGG | 0.607547 | 6_4:+8969107 | None:intergenic |
| TACATCTTCGAAATAATCAT+CGG | 0.613073 | 6_4:+8969235 | None:intergenic |
| TCAATGGAGGCAGTAGATTG+GGG | 0.615269 | 6_4:-8970256 | Msa0975240:CDS |
| ACGGATGCCACCTTCAGTGT+GGG | 0.615329 | 6_4:-8969117 | Msa0975240:CDS |
| GGAAGAACCCACACTGAAGG+TGG | 0.620049 | 6_4:+8969110 | None:intergenic |
| TATCATTCCCACTGAAATGG+CGG | 0.633262 | 6_4:+8969089 | None:intergenic |
| AATCATTGGAGGGAGACTTG+TGG | 0.640759 | 6_4:-8969505 | Msa0975240:CDS |
| TTGGAATTGGATCTTCAAAG+TGG | 0.643699 | 6_4:-8969386 | Msa0975240:CDS |
| AATGTTATTCCATCGTCCTG+CGG | 0.677415 | 6_4:+8969637 | None:intergenic |
| CGATCACATTTATTTCAGCG+TGG | 0.681214 | 6_4:-8970179 | Msa0975240:CDS |
| ATATCTGGCATGTAGATGGG+TGG | 0.682216 | 6_4:+8969872 | None:intergenic |
| GCAACTACAACATAATCGTG+AGG | 0.708433 | 6_4:+8969779 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAGATTTTCATATCAAA+TGG | + | chr6_4:8970156-8970175 | None:intergenic | 15.0% |
| !! | AAAATCTATAATGTAAAAGA+TGG | - | chr6_4:8970165-8970184 | Msa0975240:CDS | 15.0% |
| !!! | TTATAGATTTTCATATCAAA+TGG | + | chr6_4:8970156-8970175 | None:intergenic | 15.0% |
| !! | AAAATCTATAATGTAAAAGA+TGG | - | chr6_4:8970165-8970184 | Msa0975240:CDS | 15.0% |
| !! | TTGTTAAAAATCAAACTAAG+AGG | + | chr6_4:8969130-8969149 | None:intergenic | 20.0% |
| !!! | GTAATACATTGTTTTTGATT+TGG | + | chr6_4:8969237-8969256 | None:intergenic | 20.0% |
| !!! | AGCGATGTTATATTTTATAA+AGG | - | chr6_4:8969673-8969692 | Msa0975240:CDS | 20.0% |
| !!! | GCGATGTTATATTTTATAAA+GGG | - | chr6_4:8969674-8969693 | Msa0975240:CDS | 20.0% |
| !!! | TTTTGGTAATTATCTACAAA+AGG | - | chr6_4:8970071-8970090 | Msa0975240:CDS | 20.0% |
| !! | TTGTTAAAAATCAAACTAAG+AGG | + | chr6_4:8969130-8969149 | None:intergenic | 20.0% |
| !!! | GTAATACATTGTTTTTGATT+TGG | + | chr6_4:8969237-8969256 | None:intergenic | 20.0% |
| !!! | AGCGATGTTATATTTTATAA+AGG | - | chr6_4:8969673-8969692 | Msa0975240:CDS | 20.0% |
| !!! | GCGATGTTATATTTTATAAA+GGG | - | chr6_4:8969674-8969693 | Msa0975240:CDS | 20.0% |
| !!! | TTTTGGTAATTATCTACAAA+AGG | - | chr6_4:8970071-8970090 | Msa0975240:CDS | 20.0% |
| !! | TTGATAACTAAACTTTGCAA+TGG | + | chr6_4:8969209-8969228 | None:intergenic | 25.0% |
| ! | AGAACAAAGAGATGTTTATA+TGG | - | chr6_4:8969289-8969308 | Msa0975240:CDS | 25.0% |
| ! | GAACAAAGAGATGTTTATAT+GGG | - | chr6_4:8969290-8969309 | Msa0975240:CDS | 25.0% |
| ! | TAGGGTTATTATTGTAAGTT+TGG | + | chr6_4:8969416-8969435 | None:intergenic | 25.0% |
| !!! | ATTTTTGAAGGGATTTAGTA+GGG | + | chr6_4:8969434-8969453 | None:intergenic | 25.0% |
| !! | ATGGAAACTAGATTTTTGAA+GGG | + | chr6_4:8969445-8969464 | None:intergenic | 25.0% |
| ! | CTAACTCTTCTATATATATC+TGG | + | chr6_4:8969490-8969509 | None:intergenic | 25.0% |
| ! | TTATGAATGTAACGTTCATA+AGG | - | chr6_4:8969513-8969532 | Msa0975240:CDS | 25.0% |
| !!! | CGTTCATAAGGTTATTTTAT+CGG | - | chr6_4:8969525-8969544 | Msa0975240:CDS | 25.0% |
| ! | TATGTTGTAGTTGCAATTTA+TGG | - | chr6_4:8969574-8969593 | Msa0975240:CDS | 25.0% |
| !! | TTTTGATATTTGTAACTCGA+AGG | - | chr6_4:8969735-8969754 | Msa0975240:CDS | 25.0% |
| !! | AGCATATTTTGTGAAATCAT+TGG | - | chr6_4:8969825-8969844 | Msa0975240:CDS | 25.0% |
| !! | ATATTTTGTGAAATCATTGG+AGG | - | chr6_4:8969828-8969847 | Msa0975240:CDS | 25.0% |
| !! | TATTTTGTGAAATCATTGGA+GGG | - | chr6_4:8969829-8969848 | Msa0975240:CDS | 25.0% |
| !! | AAGATTTGAAGTGTATAAGT+TGG | - | chr6_4:8969939-8969958 | Msa0975240:CDS | 25.0% |
| !! | AATGTTAAAGCTTGATAGTT+TGG | - | chr6_4:8969993-8970012 | Msa0975240:CDS | 25.0% |
| !! | ATGTTAAAGCTTGATAGTTT+GGG | - | chr6_4:8969994-8970013 | Msa0975240:CDS | 25.0% |
| ! | TACATCTTCGAAATAATCAT+CGG | + | chr6_4:8970112-8970131 | None:intergenic | 25.0% |
| !! | TTGATAACTAAACTTTGCAA+TGG | + | chr6_4:8969209-8969228 | None:intergenic | 25.0% |
| ! | AGAACAAAGAGATGTTTATA+TGG | - | chr6_4:8969289-8969308 | Msa0975240:CDS | 25.0% |
| ! | GAACAAAGAGATGTTTATAT+GGG | - | chr6_4:8969290-8969309 | Msa0975240:CDS | 25.0% |
| ! | TAGGGTTATTATTGTAAGTT+TGG | + | chr6_4:8969416-8969435 | None:intergenic | 25.0% |
| !!! | ATTTTTGAAGGGATTTAGTA+GGG | + | chr6_4:8969434-8969453 | None:intergenic | 25.0% |
| !! | ATGGAAACTAGATTTTTGAA+GGG | + | chr6_4:8969445-8969464 | None:intergenic | 25.0% |
| ! | CTAACTCTTCTATATATATC+TGG | + | chr6_4:8969490-8969509 | None:intergenic | 25.0% |
| ! | TTATGAATGTAACGTTCATA+AGG | - | chr6_4:8969513-8969532 | Msa0975240:CDS | 25.0% |
| !!! | CGTTCATAAGGTTATTTTAT+CGG | - | chr6_4:8969525-8969544 | Msa0975240:CDS | 25.0% |
| ! | TATGTTGTAGTTGCAATTTA+TGG | - | chr6_4:8969574-8969593 | Msa0975240:CDS | 25.0% |
| !! | TTTTGATATTTGTAACTCGA+AGG | - | chr6_4:8969735-8969754 | Msa0975240:CDS | 25.0% |
| !! | AGCATATTTTGTGAAATCAT+TGG | - | chr6_4:8969825-8969844 | Msa0975240:CDS | 25.0% |
| !! | ATATTTTGTGAAATCATTGG+AGG | - | chr6_4:8969828-8969847 | Msa0975240:CDS | 25.0% |
| !! | TATTTTGTGAAATCATTGGA+GGG | - | chr6_4:8969829-8969848 | Msa0975240:CDS | 25.0% |
| !! | AAGATTTGAAGTGTATAAGT+TGG | - | chr6_4:8969939-8969958 | Msa0975240:CDS | 25.0% |
| !! | AATGTTAAAGCTTGATAGTT+TGG | - | chr6_4:8969993-8970012 | Msa0975240:CDS | 25.0% |
| !! | ATGTTAAAGCTTGATAGTTT+GGG | - | chr6_4:8969994-8970013 | Msa0975240:CDS | 25.0% |
| ! | TACATCTTCGAAATAATCAT+CGG | + | chr6_4:8970112-8970131 | None:intergenic | 25.0% |
| TAATGATTCCCACAAAAAGA+AGG | - | chr6_4:8969263-8969282 | Msa0975240:CDS | 30.0% | |
| ! | TTGGAAGTGGTAAATTTTGT+TGG | + | chr6_4:8969323-8969342 | None:intergenic | 30.0% |
| !! | GATTTTTGAAGGGATTTAGT+AGG | + | chr6_4:8969435-8969454 | None:intergenic | 30.0% |
| ! | GATGGAAACTAGATTTTTGA+AGG | + | chr6_4:8969446-8969465 | None:intergenic | 30.0% |
| TATATATCTGGCATGTAGAT+GGG | + | chr6_4:8969478-8969497 | None:intergenic | 30.0% | |
| ATATATATCTGGCATGTAGA+TGG | + | chr6_4:8969479-8969498 | None:intergenic | 30.0% | |
| ! | TAAAAGCTGGACAAAAGTTT+TGG | - | chr6_4:8969620-8969639 | Msa0975240:CDS | 30.0% |
| ! | TGGCTTGTAAGGAAATTTAT+TGG | - | chr6_4:8969859-8969878 | Msa0975240:CDS | 30.0% |
| ! | TGAAGTGTATAAGTTGGAAT+TGG | - | chr6_4:8969945-8969964 | Msa0975240:CDS | 30.0% |
| !!! | GGAGACAATGTTTTATTTGT+GGG | - | chr6_4:8970015-8970034 | Msa0975240:CDS | 30.0% |
| TAGTGATTCTGTATCTATGT+CGG | - | chr6_4:8970041-8970060 | Msa0975240:CDS | 30.0% | |
| TGATTATTTCGAAGATGTAC+CGG | - | chr6_4:8970113-8970132 | Msa0975240:CDS | 30.0% | |
| TCATATCAAATGGTCCATTA+GGG | + | chr6_4:8970146-8970165 | None:intergenic | 30.0% | |
| TTCATATCAAATGGTCCATT+AGG | + | chr6_4:8970147-8970166 | None:intergenic | 30.0% | |
| TAATGATTCCCACAAAAAGA+AGG | - | chr6_4:8969263-8969282 | Msa0975240:CDS | 30.0% | |
| ! | TTGGAAGTGGTAAATTTTGT+TGG | + | chr6_4:8969323-8969342 | None:intergenic | 30.0% |
| !! | GATTTTTGAAGGGATTTAGT+AGG | + | chr6_4:8969435-8969454 | None:intergenic | 30.0% |
| ! | GATGGAAACTAGATTTTTGA+AGG | + | chr6_4:8969446-8969465 | None:intergenic | 30.0% |
| TATATATCTGGCATGTAGAT+GGG | + | chr6_4:8969478-8969497 | None:intergenic | 30.0% | |
| ATATATATCTGGCATGTAGA+TGG | + | chr6_4:8969479-8969498 | None:intergenic | 30.0% | |
| ! | TAAAAGCTGGACAAAAGTTT+TGG | - | chr6_4:8969620-8969639 | Msa0975240:CDS | 30.0% |
| ! | TGGCTTGTAAGGAAATTTAT+TGG | - | chr6_4:8969859-8969878 | Msa0975240:CDS | 30.0% |
| ! | TGAAGTGTATAAGTTGGAAT+TGG | - | chr6_4:8969945-8969964 | Msa0975240:CDS | 30.0% |
| !!! | GGAGACAATGTTTTATTTGT+GGG | - | chr6_4:8970015-8970034 | Msa0975240:CDS | 30.0% |
| TAGTGATTCTGTATCTATGT+CGG | - | chr6_4:8970041-8970060 | Msa0975240:CDS | 30.0% | |
| TGATTATTTCGAAGATGTAC+CGG | - | chr6_4:8970113-8970132 | Msa0975240:CDS | 30.0% | |
| TCATATCAAATGGTCCATTA+GGG | + | chr6_4:8970146-8970165 | None:intergenic | 30.0% | |
| TTCATATCAAATGGTCCATT+AGG | + | chr6_4:8970147-8970166 | None:intergenic | 30.0% | |
| TTTGTGGGAATCATTAGCAT+AGG | + | chr6_4:8969259-8969278 | None:intergenic | 35.0% | |
| ! | GTTCTACACCTTCTTTTTGT+GGG | + | chr6_4:8969274-8969293 | None:intergenic | 35.0% |
| ! | TGTTCTACACCTTCTTTTTG+TGG | + | chr6_4:8969275-8969294 | None:intergenic | 35.0% |
| TGTTATAAGGGAGTGGTAAT+TGG | + | chr6_4:8969342-8969361 | None:intergenic | 35.0% | |
| ! | CACAAAGCCTCTTGTTATAA+GGG | + | chr6_4:8969354-8969373 | None:intergenic | 35.0% |
| TATCGGCAAATCCTACAATT+AGG | - | chr6_4:8969542-8969561 | Msa0975240:CDS | 35.0% | |
| TGTCTTGCTTTCATAAAAGC+TGG | - | chr6_4:8969607-8969626 | Msa0975240:CDS | 35.0% | |
| TTCATCATCAGTGTCATCAT+CGG | + | chr6_4:8969890-8969909 | None:intergenic | 35.0% | |
| ! | GATAGTAACTTGTCTAGTAG+TGG | - | chr6_4:8969910-8969929 | Msa0975240:CDS | 35.0% |
| TTGGAATTGGATCTTCAAAG+TGG | - | chr6_4:8969958-8969977 | Msa0975240:CDS | 35.0% | |
| !!! | GGGAGACAATGTTTTATTTG+TGG | - | chr6_4:8970014-8970033 | Msa0975240:CDS | 35.0% |
| AGCATTGCAATTTCGAACAT+TGG | - | chr6_4:8970199-8970218 | Msa0975240:CDS | 35.0% | |
| !! | ATTTCGAACATTGGTTCACA+CGG | - | chr6_4:8970208-8970227 | Msa0975240:CDS | 35.0% |
| TTTGTGGGAATCATTAGCAT+AGG | + | chr6_4:8969259-8969278 | None:intergenic | 35.0% | |
| ! | GTTCTACACCTTCTTTTTGT+GGG | + | chr6_4:8969274-8969293 | None:intergenic | 35.0% |
| ! | TGTTCTACACCTTCTTTTTG+TGG | + | chr6_4:8969275-8969294 | None:intergenic | 35.0% |
| TGTTATAAGGGAGTGGTAAT+TGG | + | chr6_4:8969342-8969361 | None:intergenic | 35.0% | |
| ! | CACAAAGCCTCTTGTTATAA+GGG | + | chr6_4:8969354-8969373 | None:intergenic | 35.0% |
| TATCGGCAAATCCTACAATT+AGG | - | chr6_4:8969542-8969561 | Msa0975240:CDS | 35.0% | |
| TGTCTTGCTTTCATAAAAGC+TGG | - | chr6_4:8969607-8969626 | Msa0975240:CDS | 35.0% | |
| TTCATCATCAGTGTCATCAT+CGG | + | chr6_4:8969890-8969909 | None:intergenic | 35.0% | |
| ! | GATAGTAACTTGTCTAGTAG+TGG | - | chr6_4:8969910-8969929 | Msa0975240:CDS | 35.0% |
| TTGGAATTGGATCTTCAAAG+TGG | - | chr6_4:8969958-8969977 | Msa0975240:CDS | 35.0% | |
| !!! | GGGAGACAATGTTTTATTTG+TGG | - | chr6_4:8970014-8970033 | Msa0975240:CDS | 35.0% |
| AGCATTGCAATTTCGAACAT+TGG | - | chr6_4:8970199-8970218 | Msa0975240:CDS | 35.0% | |
| !! | ATTTCGAACATTGGTTCACA+CGG | - | chr6_4:8970208-8970227 | Msa0975240:CDS | 35.0% |
| CGATCACATTTATTTCAGCG+TGG | - | chr6_4:8969165-8969184 | Msa0975240:CDS | 40.0% | |
| TACCACTCCCTTATAACAAG+AGG | - | chr6_4:8969344-8969363 | Msa0975240:CDS | 40.0% | |
| ! | CCACAAAGCCTCTTGTTATA+AGG | + | chr6_4:8969355-8969374 | None:intergenic | 40.0% |
| CCTTATAACAAGAGGCTTTG+TGG | - | chr6_4:8969352-8969371 | Msa0975240:CDS | 40.0% | |
| TTTGTGGTTCAAGTCATGGT+TGG | - | chr6_4:8969368-8969387 | Msa0975240:CDS | 40.0% | |
| TTGTGGTTCAAGTCATGGTT+GGG | - | chr6_4:8969369-8969388 | Msa0975240:CDS | 40.0% | |
| TAATCGTGAGGCCTAATTGT+AGG | + | chr6_4:8969556-8969575 | None:intergenic | 40.0% | |
| GCAACTACAACATAATCGTG+AGG | + | chr6_4:8969568-8969587 | None:intergenic | 40.0% | |
| AATGTTATTCCATCGTCCTG+CGG | + | chr6_4:8969710-8969729 | None:intergenic | 40.0% | |
| !! | TTCCTGATGTTGTTTCACCA+TGG | - | chr6_4:8969782-8969801 | Msa0975240:CDS | 40.0% |
| !! | TCCTGATGTTGTTTCACCAT+GGG | - | chr6_4:8969783-8969802 | Msa0975240:CDS | 40.0% |
| TCATCATCAGTGTCATCATC+GGG | + | chr6_4:8969889-8969908 | None:intergenic | 40.0% | |
| !!! | TCTATGTCGGCTTCGTATTT+TGG | - | chr6_4:8970054-8970073 | Msa0975240:CDS | 40.0% |
| TCAAATGGTCCATTAGGGTA+AGG | + | chr6_4:8970141-8970160 | None:intergenic | 40.0% | |
| CGATCACATTTATTTCAGCG+TGG | - | chr6_4:8969165-8969184 | Msa0975240:CDS | 40.0% | |
| TACCACTCCCTTATAACAAG+AGG | - | chr6_4:8969344-8969363 | Msa0975240:CDS | 40.0% | |
| ! | CCACAAAGCCTCTTGTTATA+AGG | + | chr6_4:8969355-8969374 | None:intergenic | 40.0% |
| CCTTATAACAAGAGGCTTTG+TGG | - | chr6_4:8969352-8969371 | Msa0975240:CDS | 40.0% | |
| TTTGTGGTTCAAGTCATGGT+TGG | - | chr6_4:8969368-8969387 | Msa0975240:CDS | 40.0% | |
| TTGTGGTTCAAGTCATGGTT+GGG | - | chr6_4:8969369-8969388 | Msa0975240:CDS | 40.0% | |
| TAATCGTGAGGCCTAATTGT+AGG | + | chr6_4:8969556-8969575 | None:intergenic | 40.0% | |
| GCAACTACAACATAATCGTG+AGG | + | chr6_4:8969568-8969587 | None:intergenic | 40.0% | |
| AATGTTATTCCATCGTCCTG+CGG | + | chr6_4:8969710-8969729 | None:intergenic | 40.0% | |
| !! | TTCCTGATGTTGTTTCACCA+TGG | - | chr6_4:8969782-8969801 | Msa0975240:CDS | 40.0% |
| !! | TCCTGATGTTGTTTCACCAT+GGG | - | chr6_4:8969783-8969802 | Msa0975240:CDS | 40.0% |
| TCATCATCAGTGTCATCATC+GGG | + | chr6_4:8969889-8969908 | None:intergenic | 40.0% | |
| !!! | TCTATGTCGGCTTCGTATTT+TGG | - | chr6_4:8970054-8970073 | Msa0975240:CDS | 40.0% |
| TCAAATGGTCCATTAGGGTA+AGG | + | chr6_4:8970141-8970160 | None:intergenic | 40.0% | |
| TCAGCGTGGTATGCAAGAAT+TGG | - | chr6_4:8969179-8969198 | Msa0975240:CDS | 45.0% | |
| AAGGGAGTGGTAATTGGAAG+TGG | + | chr6_4:8969336-8969355 | None:intergenic | 45.0% | |
| ! | AGCCTCTTGTTATAAGGGAG+TGG | + | chr6_4:8969349-8969368 | None:intergenic | 45.0% |
| ! | AGGCTTTGTGGTTCAAGTCA+TGG | - | chr6_4:8969364-8969383 | Msa0975240:CDS | 45.0% |
| AAGTCATGGTTGGGTAGCAA+AGG | - | chr6_4:8969378-8969397 | Msa0975240:CDS | 45.0% | |
| ATATCTGGCATGTAGATGGG+TGG | + | chr6_4:8969475-8969494 | None:intergenic | 45.0% | |
| !! | CCTGATGTTGTTTCACCATG+GGG | - | chr6_4:8969784-8969803 | Msa0975240:CDS | 45.0% |
| !! | CTGATGTTGTTTCACCATGG+GGG | - | chr6_4:8969785-8969804 | Msa0975240:CDS | 45.0% |
| !! | TGATGTTGTTTCACCATGGG+GGG | - | chr6_4:8969786-8969805 | Msa0975240:CDS | 45.0% |
| AATCATTGGAGGGAGACTTG+TGG | - | chr6_4:8969839-8969858 | Msa0975240:CDS | 45.0% | |
| TCAGCGTGGTATGCAAGAAT+TGG | - | chr6_4:8969179-8969198 | Msa0975240:CDS | 45.0% | |
| AAGGGAGTGGTAATTGGAAG+TGG | + | chr6_4:8969336-8969355 | None:intergenic | 45.0% | |
| ! | AGCCTCTTGTTATAAGGGAG+TGG | + | chr6_4:8969349-8969368 | None:intergenic | 45.0% |
| ! | AGGCTTTGTGGTTCAAGTCA+TGG | - | chr6_4:8969364-8969383 | Msa0975240:CDS | 45.0% |
| AAGTCATGGTTGGGTAGCAA+AGG | - | chr6_4:8969378-8969397 | Msa0975240:CDS | 45.0% | |
| ATATCTGGCATGTAGATGGG+TGG | + | chr6_4:8969475-8969494 | None:intergenic | 45.0% | |
| !! | CCTGATGTTGTTTCACCATG+GGG | - | chr6_4:8969784-8969803 | Msa0975240:CDS | 45.0% |
| !! | CTGATGTTGTTTCACCATGG+GGG | - | chr6_4:8969785-8969804 | Msa0975240:CDS | 45.0% |
| !! | TGATGTTGTTTCACCATGGG+GGG | - | chr6_4:8969786-8969805 | Msa0975240:CDS | 45.0% |
| AATCATTGGAGGGAGACTTG+TGG | - | chr6_4:8969839-8969858 | Msa0975240:CDS | 45.0% | |
| TCATGGTTGGGTAGCAAAGG+TGG | - | chr6_4:8969381-8969400 | Msa0975240:CDS | 50.0% | |
| GCATGTAGATGGGTGGTAGA+GGG | + | chr6_4:8969468-8969487 | None:intergenic | 50.0% | |
| !! | AAAGGGTTAGTCTATGCCGC+AGG | - | chr6_4:8969691-8969710 | Msa0975240:CDS | 50.0% |
| CCCCATGGTGAAACAACATC+AGG | + | chr6_4:8969787-8969806 | None:intergenic | 50.0% | |
| TGAGCAAAATCATCCCCCCA+TGG | + | chr6_4:8969802-8969821 | None:intergenic | 50.0% | |
| ! | AGGGAGACTTGTGGCTTGTA+AGG | - | chr6_4:8969848-8969867 | Msa0975240:CDS | 50.0% |
| GTACCGGATCCTTACCCTAA+TGG | - | chr6_4:8970129-8970148 | Msa0975240:CDS | 50.0% | |
| GGTCCATTAGGGTAAGGATC+CGG | + | chr6_4:8970135-8970154 | None:intergenic | 50.0% | |
| GGTTCTTCCGCCATTTCAGT+GGG | - | chr6_4:8970248-8970267 | Msa0975240:CDS | 50.0% | |
| TCATGGTTGGGTAGCAAAGG+TGG | - | chr6_4:8969381-8969400 | Msa0975240:CDS | 50.0% | |
| GCATGTAGATGGGTGGTAGA+GGG | + | chr6_4:8969468-8969487 | None:intergenic | 50.0% | |
| !! | AAAGGGTTAGTCTATGCCGC+AGG | - | chr6_4:8969691-8969710 | Msa0975240:CDS | 50.0% |
| CCCCATGGTGAAACAACATC+AGG | + | chr6_4:8969787-8969806 | None:intergenic | 50.0% | |
| TGAGCAAAATCATCCCCCCA+TGG | + | chr6_4:8969802-8969821 | None:intergenic | 50.0% | |
| ! | AGGGAGACTTGTGGCTTGTA+AGG | - | chr6_4:8969848-8969867 | Msa0975240:CDS | 50.0% |
| GTACCGGATCCTTACCCTAA+TGG | - | chr6_4:8970129-8970148 | Msa0975240:CDS | 50.0% | |
| GGTCCATTAGGGTAAGGATC+CGG | + | chr6_4:8970135-8970154 | None:intergenic | 50.0% | |
| GGTTCTTCCGCCATTTCAGT+GGG | - | chr6_4:8970248-8970267 | Msa0975240:CDS | 50.0% | |
| GTAGATGGGTGGTAGAGGGA+TGG | + | chr6_4:8969464-8969483 | None:intergenic | 55.0% | |
| GGCATGTAGATGGGTGGTAG+AGG | + | chr6_4:8969469-8969488 | None:intergenic | 55.0% | |
| TAGTCTATGCCGCAGGACGA+TGG | - | chr6_4:8969698-8969717 | Msa0975240:CDS | 55.0% | |
| ACGGATGCCACCTTCAGTGT+GGG | - | chr6_4:8970227-8970246 | Msa0975240:CDS | 55.0% | |
| GGAAGAACCCACACTGAAGG+TGG | + | chr6_4:8970237-8970256 | None:intergenic | 55.0% | |
| GGGTTCTTCCGCCATTTCAG+TGG | - | chr6_4:8970247-8970266 | Msa0975240:CDS | 55.0% | |
| GTAGATGGGTGGTAGAGGGA+TGG | + | chr6_4:8969464-8969483 | None:intergenic | 55.0% | |
| GGCATGTAGATGGGTGGTAG+AGG | + | chr6_4:8969469-8969488 | None:intergenic | 55.0% | |
| TAGTCTATGCCGCAGGACGA+TGG | - | chr6_4:8969698-8969717 | Msa0975240:CDS | 55.0% | |
| ACGGATGCCACCTTCAGTGT+GGG | - | chr6_4:8970227-8970246 | Msa0975240:CDS | 55.0% | |
| GGAAGAACCCACACTGAAGG+TGG | + | chr6_4:8970237-8970256 | None:intergenic | 55.0% | |
| GGGTTCTTCCGCCATTTCAG+TGG | - | chr6_4:8970247-8970266 | Msa0975240:CDS | 55.0% | |
| CACGGATGCCACCTTCAGTG+TGG | - | chr6_4:8970226-8970245 | Msa0975240:CDS | 60.0% | |
| GGCGGAAGAACCCACACTGA+AGG | + | chr6_4:8970240-8970259 | None:intergenic | 60.0% | |
| CACGGATGCCACCTTCAGTG+TGG | - | chr6_4:8970226-8970245 | Msa0975240:CDS | 60.0% | |
| GGCGGAAGAACCCACACTGA+AGG | + | chr6_4:8970240-8970259 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 8969091 | 8970275 | 8969091 | ID=Msa0975240;Name=Msa0975240 |
| chr6_4 | mRNA | 8969091 | 8970275 | 8969091 | ID=Msa0975240-mRNA-1;Parent=Msa0975240;Name=Msa0975240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|394 |
| chr6_4 | exon | 8969091 | 8970275 | 8969091 | ID=Msa0975240-mRNA-1:exon:3193;Parent=Msa0975240-mRNA-1 |
| chr6_4 | CDS | 8969091 | 8970275 | 8969091 | ID=Msa0975240-mRNA-1:cds;Parent=Msa0975240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
