Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978970 | XP_013451322.1 | 96.154 | 130 | 5 | 0 | 1 | 130 | 1 | 130 | 3.63e-86 | 257 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978970 | A0A072U6V3 | 96.154 | 130 | 5 | 0 | 1 | 130 | 1 | 130 | 1.73e-86 | 257 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0978970 | Msa1332040 | -0.803732 | 3.029291e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978970 | MtrunA17_Chr6g0457791 | 96.154 | 130 | 5 | 0 | 1 | 130 | 1 | 130 | 3.34e-90 | 257 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978970 | AT5G16160.1 | 40.152 | 132 | 69 | 5 | 1 | 130 | 10 | 133 | 1.58e-22 | 86.3 |
Find 28 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACGCCTTTGGGATTGAAAT+TGG | 0.166973 | 6_4:+15207040 | None:intergenic |
| GTCAAAATGTTTAGACAAAT+AGG | 0.276462 | 6_4:-15203975 | Msa0978970:three_prime_UTR |
| ATTAATATAAACAGATAAAA+AGG | 0.286634 | 6_4:+15203915 | None:intergenic |
| AAAGAAGCCAAAATTGCATT+GGG | 0.411282 | 6_4:-15205262 | Msa0978970:CDS |
| TTGATCTTGAGAAACGCCTT+TGG | 0.419277 | 6_4:+15207028 | None:intergenic |
| ACGCCTTTGGGATTGAAATT+GGG | 0.423486 | 6_4:+15207041 | None:intergenic |
| TGATCTTGAGAAACGCCTTT+GGG | 0.440602 | 6_4:+15207029 | None:intergenic |
| GAGAATACTGACACGAAACT+TGG | 0.476337 | 6_4:+15207001 | None:intergenic |
| CAAAGAAGCCAAAATTGCAT+TGG | 0.485599 | 6_4:-15205263 | Msa0978970:CDS |
| TTGAAATTGGGTTGAAGACA+AGG | 0.486350 | 6_4:+15207053 | None:intergenic |
| TTTGTAAATTTGTATTATTG+AGG | 0.487243 | 6_4:-15204055 | Msa0978970:three_prime_UTR |
| AGCTTTCACAATTGTTCAAG+AGG | 0.501859 | 6_4:+15205328 | None:intergenic |
| GATTCCTCATTGCAGTTCCA+TGG | 0.512300 | 6_4:+15204099 | None:intergenic |
| GGCTTGACACCAAGGAGAGG+TGG | 0.527330 | 6_4:-15204154 | Msa0978970:CDS |
| GTATTATTGAGGATAGTTCA+AGG | 0.530260 | 6_4:-15204044 | Msa0978970:three_prime_UTR |
| TATTATTGAGGATAGTTCAA+GGG | 0.540644 | 6_4:-15204043 | Msa0978970:three_prime_UTR |
| GTGATATGATATCTACATGT+TGG | 0.574074 | 6_4:+15204121 | None:intergenic |
| TATAGCGAGAACAGTGCTCA+AGG | 0.594448 | 6_4:-15205378 | Msa0978970:CDS |
| CAACCCAATTTCAATCCCAA+AGG | 0.599125 | 6_4:-15207044 | Msa0978970:CDS |
| GCTTGACACCAAGGAGAGGT+GGG | 0.599728 | 6_4:-15204153 | Msa0978970:CDS |
| ATTATTGAGGATAGTTCAAG+GGG | 0.607970 | 6_4:-15204042 | Msa0978970:three_prime_UTR |
| AGAAGCCAAAATTGCATTGG+GGG | 0.610391 | 6_4:-15205260 | Msa0978970:intron |
| CATTTGCAGGCTTGACACCA+AGG | 0.630484 | 6_4:-15204162 | Msa0978970:intron |
| GCAGGCTTGACACCAAGGAG+AGG | 0.644830 | 6_4:-15204157 | Msa0978970:intron |
| AAGAAGCCAAAATTGCATTG+GGG | 0.668833 | 6_4:-15205261 | Msa0978970:CDS |
| ATCACCATGGAACTGCAATG+AGG | 0.674885 | 6_4:-15204103 | Msa0978970:three_prime_UTR |
| AAGTTTAAGACAAAACCCAA+AGG | 0.697268 | 6_4:-15205544 | Msa0978970:intron |
| ATGTAGATATCATATCACCA+TGG | 0.717377 | 6_4:-15204116 | Msa0978970:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAAAAATAGAAGA+TGG | - | chr6_4:15203909-15203928 | Msa0978970:three_prime_UTR | 10.0% |
| !!! | TTTTCAAAATAAACAAAAAA+GGG | + | chr6_4:15204121-15204140 | None:intergenic | 10.0% |
| !!! | TTTTTCAAAATAAACAAAAA+AGG | + | chr6_4:15204122-15204141 | None:intergenic | 10.0% |
| !!! | TCTTATTTGTTTTTAAATTT+TGG | - | chr6_4:15205531-15205550 | Msa0978970:intron | 10.0% |
| !! | ATTAATATAAACAGATAAAA+AGG | + | chr6_4:15207120-15207139 | None:intergenic | 10.0% |
| !! | TTTCAAAATAAACAAAAAAG+GGG | + | chr6_4:15204120-15204139 | None:intergenic | 15.0% |
| !! | ACTAACAACAAATATATAAA+TGG | + | chr6_4:15205168-15205187 | None:intergenic | 15.0% |
| !!! | TTTTATGTTATTCATGTATA+TGG | - | chr6_4:15206789-15206808 | Msa0978970:intron | 15.0% |
| !! | TTTGTAAATTTGTATTATTG+AGG | - | chr6_4:15206977-15206996 | Msa0978970:intron | 15.0% |
| !!! | TTTTGACAATAATACTAAAA+AGG | + | chr6_4:15207031-15207050 | None:intergenic | 15.0% |
| !! | TTAAATTAAACAAAAACTCT+TGG | + | chr6_4:15207086-15207105 | None:intergenic | 15.0% |
| !! | AAAAAAATAGAAGATGGAAA+AGG | - | chr6_4:15203915-15203934 | Msa0978970:three_prime_UTR | 20.0% |
| !! | TTCAAAATAAACAAAAAAGG+GGG | + | chr6_4:15204119-15204138 | None:intergenic | 20.0% |
| !!! | TTTTTATTTTCCCAAAATTC+TGG | - | chr6_4:15204155-15204174 | Msa0978970:CDS | 20.0% |
| !! | TATTTATGTGTTTCTTGTAA+TGG | - | chr6_4:15204203-15204222 | Msa0978970:intron | 20.0% |
| !!! | TTCTTGAAGAATTTTTTTGT+TGG | - | chr6_4:15204234-15204253 | Msa0978970:intron | 20.0% |
| !!! | TCTTGAAGAATTTTTTTGTT+GGG | - | chr6_4:15204235-15204254 | Msa0978970:intron | 20.0% |
| !! | AAAATAAAAATTAAGGCGAA+GGG | - | chr6_4:15204332-15204351 | Msa0978970:intron | 20.0% |
| !!! | TTAAGTTGTTTATCCAAATA+TGG | + | chr6_4:15204513-15204532 | None:intergenic | 20.0% |
| !!! | TATAAGGTGAAAATAACTTT+TGG | - | chr6_4:15204661-15204680 | Msa0978970:intron | 20.0% |
| !! | GTAAGGAGATTATTAAAATT+AGG | - | chr6_4:15205276-15205295 | Msa0978970:CDS | 20.0% |
| !! | AAAAAACAAAAAGAACCTTT+GGG | + | chr6_4:15205506-15205525 | None:intergenic | 20.0% |
| !! | AAAACACGATAATTATCAAA+CGG | - | chr6_4:15206036-15206055 | Msa0978970:intron | 20.0% |
| !! | GATTACTATAAACACATTTA+AGG | + | chr6_4:15206603-15206622 | None:intergenic | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+CGG | + | chr6_4:15206661-15206680 | None:intergenic | 20.0% |
| !!! | AACATTTTGACAAAATTTGA+TGG | + | chr6_4:15206958-15206977 | None:intergenic | 20.0% |
| ! | CAAAATAAAAATTAAGGCGA+AGG | - | chr6_4:15204331-15204350 | Msa0978970:intron | 25.0% |
| ! | TTTATTTCAATAAGCTCTCT+AGG | + | chr6_4:15204372-15204391 | None:intergenic | 25.0% |
| !! | AGTTATTCTAGAAAGCTATA+AGG | - | chr6_4:15204645-15204664 | Msa0978970:intron | 25.0% |
| ! | AGCAAGATAACATATAAGTA+AGG | - | chr6_4:15204968-15204987 | Msa0978970:intron | 25.0% |
| ! | GCAAGATAACATATAAGTAA+GGG | - | chr6_4:15204969-15204988 | Msa0978970:intron | 25.0% |
| ! | CAAGATAACATATAAGTAAG+GGG | - | chr6_4:15204970-15204989 | Msa0978970:intron | 25.0% |
| ! | TTCCTTAATTAGAAAAGATG+TGG | - | chr6_4:15205134-15205153 | Msa0978970:intron | 25.0% |
| ! | TAAAACATGTTGAATTCAAG+TGG | + | chr6_4:15205375-15205394 | None:intergenic | 25.0% |
| ! | CAAAAAACAAAAAGAACCTT+TGG | + | chr6_4:15205507-15205526 | None:intergenic | 25.0% |
| ! | ACACACAAAATACATATCAA+CGG | + | chr6_4:15205580-15205599 | None:intergenic | 25.0% |
| !!! | TATTTTGTGTGTTCTGAATT+GGG | - | chr6_4:15205588-15205607 | Msa0978970:intron | 25.0% |
| !! | CGTTGATATAATTTTCTGAT+GGG | + | chr6_4:15205893-15205912 | None:intergenic | 25.0% |
| ! | CCATCAGAAAATTATATCAA+CGG | - | chr6_4:15205891-15205910 | Msa0978970:intron | 25.0% |
| ! | ATAATTATCAAACGGAACTT+TGG | - | chr6_4:15206044-15206063 | Msa0978970:intron | 25.0% |
| ! | TAATTATCAAACGGAACTTT+GGG | - | chr6_4:15206045-15206064 | Msa0978970:intron | 25.0% |
| ! | TACAACATATTGTCAAATAG+TGG | - | chr6_4:15206201-15206220 | Msa0978970:intron | 25.0% |
| ! | TTACATGGGATTTCATTAAA+TGG | - | chr6_4:15206319-15206338 | Msa0978970:intron | 25.0% |
| ! | ATATAACTATCTATGAAGCA+CGG | + | chr6_4:15206764-15206783 | None:intergenic | 25.0% |
| ! | TATTATTGAGGATAGTTCAA+GGG | - | chr6_4:15206989-15207008 | Msa0978970:intron | 25.0% |
| ! | GTCAAAATGTTTAGACAAAT+AGG | - | chr6_4:15207057-15207076 | Msa0978970:CDS | 25.0% |
| ! | TAAACAGATAAAAAGGAAGA+AGG | + | chr6_4:15207113-15207132 | None:intergenic | 25.0% |
| ! | CTCTTTCTGAAGAAAAATGT+TGG | - | chr6_4:15204477-15204496 | Msa0978970:intron | 30.0% |
| AGAAAAATGTTGGTGTGTTA+AGG | - | chr6_4:15204487-15204506 | Msa0978970:intron | 30.0% | |
| AGCTTCTATATAAGCACTTA+TGG | + | chr6_4:15204562-15204581 | None:intergenic | 30.0% | |
| CCTATTTAGAAGAGCTTATA+TGG | + | chr6_4:15204705-15204724 | None:intergenic | 30.0% | |
| CCATATAAGCTCTTCTAAAT+AGG | - | chr6_4:15204702-15204721 | Msa0978970:intron | 30.0% | |
| !! | GGAAGGCTAAATCTTTATTT+TGG | - | chr6_4:15205062-15205081 | Msa0978970:intron | 30.0% |
| ! | CACCACATCTTTTCTAATTA+AGG | + | chr6_4:15205139-15205158 | None:intergenic | 30.0% |
| CTTACCAAAAACAGATTAGT+CGG | + | chr6_4:15205261-15205280 | None:intergenic | 30.0% | |
| ATGTTCACTCAATGTTAACA+GGG | + | chr6_4:15205417-15205436 | None:intergenic | 30.0% | |
| AATGTTCACTCAATGTTAAC+AGG | + | chr6_4:15205418-15205437 | None:intergenic | 30.0% | |
| GTTAACATTGAGTGAACATT+TGG | - | chr6_4:15205418-15205437 | Msa0978970:intron | 30.0% | |
| ! | AAGTTTAAGACAAAACCCAA+AGG | - | chr6_4:15205488-15205507 | Msa0978970:intron | 30.0% |
| !! | GTATTTTGTGTGTTCTGAAT+TGG | - | chr6_4:15205587-15205606 | Msa0978970:intron | 30.0% |
| TTCGAAAAATGAAGACTCAA+AGG | - | chr6_4:15205731-15205750 | Msa0978970:intron | 30.0% | |
| TCGAAAAATGAAGACTCAAA+GGG | - | chr6_4:15205732-15205751 | Msa0978970:intron | 30.0% | |
| AAAGAAGCCAAAATTGCATT+GGG | - | chr6_4:15205770-15205789 | Msa0978970:intron | 30.0% | |
| !! | ATATAATTTTCTGATGGGCA+TGG | + | chr6_4:15205888-15205907 | None:intergenic | 30.0% |
| ! | CCGTTGATATAATTTTCTGA+TGG | + | chr6_4:15205894-15205913 | None:intergenic | 30.0% |
| AATTATCAAACGGAACTTTG+GGG | - | chr6_4:15206046-15206065 | Msa0978970:intron | 30.0% | |
| !!! | TGTGTTTGTTTTAGATTGTG+TGG | + | chr6_4:15206072-15206091 | None:intergenic | 30.0% |
| TGAGCTTAGGATATTTACAT+GGG | - | chr6_4:15206305-15206324 | Msa0978970:intron | 30.0% | |
| !! | AAATGGAAGTATCAGAAATG+AGG | - | chr6_4:15206336-15206355 | Msa0978970:intron | 30.0% |
| TAATCTATGAAGCACAGATT+CGG | - | chr6_4:15206618-15206637 | Msa0978970:intron | 30.0% | |
| GTGATATGATATCTACATGT+TGG | + | chr6_4:15206914-15206933 | None:intergenic | 30.0% | |
| ATGTAGATATCATATCACCA+TGG | - | chr6_4:15206916-15206935 | Msa0978970:intron | 30.0% | |
| GTATTATTGAGGATAGTTCA+AGG | - | chr6_4:15206988-15207007 | Msa0978970:intron | 30.0% | |
| ATTATTGAGGATAGTTCAAG+GGG | - | chr6_4:15206990-15207009 | Msa0978970:intron | 30.0% | |
| !! | TTGAAATTGGGTTGAAGACA+AGG | + | chr6_4:15203982-15204001 | None:intergenic | 35.0% |
| AAAGGGGGAAAATTGCAATA+TGG | + | chr6_4:15204104-15204123 | None:intergenic | 35.0% | |
| !! | AACCTGGGTATTGTTTTACT+AGG | - | chr6_4:15204178-15204197 | Msa0978970:intron | 35.0% |
| AACCTAGTAAAACAATACCC+AGG | + | chr6_4:15204183-15204202 | None:intergenic | 35.0% | |
| TAAGCACTTATGAGACAGTT+TGG | + | chr6_4:15204443-15204462 | None:intergenic | 35.0% | |
| TTCAGAAAGAGTTCATCTAC+TGG | + | chr6_4:15204468-15204487 | None:intergenic | 35.0% | |
| ! | ACTCACACTTAAGGTTTGTT+TGG | + | chr6_4:15204944-15204963 | None:intergenic | 35.0% |
| CTCAATAACTAGCGTATGTT+TGG | - | chr6_4:15205002-15205021 | Msa0978970:intron | 35.0% | |
| ATAACTAGCGTATGTTTGGA+TGG | - | chr6_4:15205006-15205025 | Msa0978970:intron | 35.0% | |
| TGACGATTCTCCAATATGTT+AGG | - | chr6_4:15205194-15205213 | Msa0978970:intron | 35.0% | |
| !!! | CGACTAATCTGTTTTTGGTA+AGG | - | chr6_4:15205259-15205278 | Msa0978970:intron | 35.0% |
| TTATGAATTATTCCACCACC+CGG | - | chr6_4:15205299-15205318 | Msa0978970:CDS | 35.0% | |
| AGCTTTCACAATTGTTCAAG+AGG | + | chr6_4:15205707-15205726 | None:intergenic | 35.0% | |
| AAAAATGAAGACTCAAAGGG+TGG | - | chr6_4:15205735-15205754 | Msa0978970:intron | 35.0% | |
| CAAAGAAGCCAAAATTGCAT+TGG | - | chr6_4:15205769-15205788 | Msa0978970:intron | 35.0% | |
| AAGAAGCCAAAATTGCATTG+GGG | - | chr6_4:15205771-15205790 | Msa0978970:intron | 35.0% | |
| ! | GTTGTCTTTTACACACTCTT+CGG | - | chr6_4:15205832-15205851 | Msa0978970:intron | 35.0% |
| CACACTCTTCGGAATAAATT+TGG | - | chr6_4:15205843-15205862 | Msa0978970:intron | 35.0% | |
| ATGCTACACTATAGTATCAC+TGG | + | chr6_4:15206144-15206163 | None:intergenic | 35.0% | |
| TGATCCATAATTGACAACAC+TGG | - | chr6_4:15206263-15206282 | Msa0978970:intron | 35.0% | |
| GTGAGCTTAGGATATTTACA+TGG | - | chr6_4:15206304-15206323 | Msa0978970:intron | 35.0% | |
| TCTCAAATTATTAGCGGTGT+CGG | + | chr6_4:15206655-15206674 | None:intergenic | 35.0% | |
| !! | TGTTTGTTGTGAACATTTGC+AGG | - | chr6_4:15206857-15206876 | Msa0978970:intron | 35.0% |
| CAACCCAATTTCAATCCCAA+AGG | - | chr6_4:15203988-15204007 | Msa0978970:three_prime_UTR | 40.0% | |
| !! | ACGCCTTTGGGATTGAAATT+GGG | + | chr6_4:15203994-15204013 | None:intergenic | 40.0% |
| !! | AACGCCTTTGGGATTGAAAT+TGG | + | chr6_4:15203995-15204014 | None:intergenic | 40.0% |
| TGATCTTGAGAAACGCCTTT+GGG | + | chr6_4:15204006-15204025 | None:intergenic | 40.0% | |
| TTGATCTTGAGAAACGCCTT+TGG | + | chr6_4:15204007-15204026 | None:intergenic | 40.0% | |
| GAGAATACTGACACGAAACT+TGG | + | chr6_4:15204034-15204053 | None:intergenic | 40.0% | |
| !! | TTTCCCAAAATTCTGGAACC+TGG | - | chr6_4:15204162-15204181 | Msa0978970:intron | 40.0% |
| !! | TTCCCAAAATTCTGGAACCT+GGG | - | chr6_4:15204163-15204182 | Msa0978970:intron | 40.0% |
| ! | TACCCAGGTTCCAGAATTTT+GGG | + | chr6_4:15204168-15204187 | None:intergenic | 40.0% |
| ! | ATACCCAGGTTCCAGAATTT+TGG | + | chr6_4:15204169-15204188 | None:intergenic | 40.0% |
| !! | GATTGCTGTTTATCCAAGCA+GGG | + | chr6_4:15204267-15204286 | None:intergenic | 40.0% |
| !! | TGATTGCTGTTTATCCAAGC+AGG | + | chr6_4:15204268-15204287 | None:intergenic | 40.0% |
| TGGTGTGTTAAGGCCATATT+TGG | - | chr6_4:15204497-15204516 | Msa0978970:intron | 40.0% | |
| GAAAGATCTAGCGATAAACG+AGG | - | chr6_4:15204784-15204803 | Msa0978970:intron | 40.0% | |
| ! | AAGCCTTATCTCACTATGTG+GGG | + | chr6_4:15204868-15204887 | None:intergenic | 40.0% |
| ! | CAAGCCTTATCTCACTATGT+GGG | + | chr6_4:15204869-15204888 | None:intergenic | 40.0% |
| TTGCTCAACACTCACACTTA+AGG | + | chr6_4:15204953-15204972 | None:intergenic | 40.0% | |
| !! | TCTGCCGACTAATCTGTTTT+TGG | - | chr6_4:15205254-15205273 | Msa0978970:intron | 40.0% |
| TGTAAAGGAACAAGCTTGGT+TGG | + | chr6_4:15205339-15205358 | None:intergenic | 40.0% | |
| ! | ACCAAGCTTGTTCCTTTACA+TGG | - | chr6_4:15205339-15205358 | Msa0978970:CDS | 40.0% |
| TCCATGTAAAGGAACAAGCT+TGG | + | chr6_4:15205343-15205362 | None:intergenic | 40.0% | |
| GGTTAATGTGCTCCATGTAA+AGG | + | chr6_4:15205354-15205373 | None:intergenic | 40.0% | |
| GAGTGAACATTTGGATCTGT+AGG | - | chr6_4:15205427-15205446 | Msa0978970:intron | 40.0% | |
| TGCAGATGATGCCAAAAAGA+AGG | - | chr6_4:15205614-15205633 | Msa0978970:intron | 40.0% | |
| AGAAGCCAAAATTGCATTGG+GGG | - | chr6_4:15205772-15205791 | Msa0978970:intron | 40.0% | |
| ! | CTATACCCCCAATGCAATTT+TGG | + | chr6_4:15205780-15205799 | None:intergenic | 40.0% |
| !! | TTTCTGATGGGCATGGTTTT+AGG | + | chr6_4:15205881-15205900 | None:intergenic | 40.0% |
| AGTGAAATTTCATGTTGCCC+TGG | - | chr6_4:15206096-15206115 | Msa0978970:intron | 40.0% | |
| CGCGTATCACAGAACAAAAA+TGG | + | chr6_4:15206175-15206194 | None:intergenic | 40.0% | |
| !!! | CTTTTCGCGCTCTATTTCTA+AGG | + | chr6_4:15206539-15206558 | None:intergenic | 40.0% |
| TGTGCAGCTAAAATCAGGAT+TGG | + | chr6_4:15206575-15206594 | None:intergenic | 40.0% | |
| !!! | AATCCTGATTTTAGCTGCAC+AGG | - | chr6_4:15206574-15206593 | Msa0978970:intron | 40.0% |
| ACAAGTGCTTATGTCAGCAG+AGG | - | chr6_4:15204728-15204747 | Msa0978970:intron | 45.0% | |
| AGATCTAGCGATAAACGAGG+TGG | - | chr6_4:15204787-15204806 | Msa0978970:intron | 45.0% | |
| AGACCCCACATAGTGAGATA+AGG | - | chr6_4:15204862-15204881 | Msa0978970:intron | 45.0% | |
| ! | CCAAGCCTTATCTCACTATG+TGG | + | chr6_4:15204870-15204889 | None:intergenic | 45.0% |
| CCACATAGTGAGATAAGGCT+TGG | - | chr6_4:15204867-15204886 | Msa0978970:intron | 45.0% | |
| ! | TGGAGCGTTTCAGAGGATTA+TGG | - | chr6_4:15205026-15205045 | Msa0978970:intron | 45.0% |
| AGCGTTTCAGAGGATTATGG+AGG | - | chr6_4:15205029-15205048 | Msa0978970:intron | 45.0% | |
| GCGTTTCAGAGGATTATGGA+GGG | - | chr6_4:15205030-15205049 | Msa0978970:intron | 45.0% | |
| CGTTTCAGAGGATTATGGAG+GGG | - | chr6_4:15205031-15205050 | Msa0978970:intron | 45.0% | |
| ! | GATTATGGAGGGGAGAGTTT+TGG | - | chr6_4:15205041-15205060 | Msa0978970:intron | 45.0% |
| ACGAGGGGATCCTAACATAT+TGG | + | chr6_4:15205207-15205226 | None:intergenic | 45.0% | |
| ! | CCATTTTGTAAGGTCACGAG+GGG | + | chr6_4:15205222-15205241 | None:intergenic | 45.0% |
| ! | CCCATTTTGTAAGGTCACGA+GGG | + | chr6_4:15205223-15205242 | None:intergenic | 45.0% |
| CCCTCGTGACCTTACAAAAT+GGG | - | chr6_4:15205220-15205239 | Msa0978970:intron | 45.0% | |
| TGACCTTACAAAATGGGCCA+TGG | - | chr6_4:15205226-15205245 | Msa0978970:intron | 45.0% | |
| ! | AGTCCATGGCCCATTTTGTA+AGG | + | chr6_4:15205232-15205251 | None:intergenic | 45.0% |
| ! | ATTGCCTCGTGCCTTCTTTT+TGG | + | chr6_4:15205628-15205647 | None:intergenic | 45.0% |
| TATAGCGAGAACAGTGCTCA+AGG | - | chr6_4:15205654-15205673 | Msa0978970:intron | 45.0% | |
| GTTGTCTAACCTTCACGCAA+CGG | - | chr6_4:15205980-15205999 | Msa0978970:intron | 45.0% | |
| CTGTTTGACAACACTAGCCA+GGG | + | chr6_4:15206116-15206135 | None:intergenic | 45.0% | |
| TGGCTAGTGTTGTCAAACAG+CGG | - | chr6_4:15206116-15206135 | Msa0978970:intron | 45.0% | |
| AGGGCCAGTGTTGTCAATTA+TGG | + | chr6_4:15206270-15206289 | None:intergenic | 45.0% | |
| ATAATTGACAACACTGGCCC+TGG | - | chr6_4:15206269-15206288 | Msa0978970:intron | 45.0% | |
| CCTAAGCTCACTCTACTAGT+GGG | + | chr6_4:15206295-15206314 | None:intergenic | 45.0% | |
| TCCTAAGCTCACTCTACTAG+TGG | + | chr6_4:15206296-15206315 | None:intergenic | 45.0% | |
| !! | GCGCTCTATTTCTAAGGAAC+TGG | + | chr6_4:15206533-15206552 | None:intergenic | 45.0% |
| TGACCTGTGCAGCTAAAATC+AGG | + | chr6_4:15206580-15206599 | None:intergenic | 45.0% | |
| ! | TTTTCTTTCCCACCTCTCCT+TGG | + | chr6_4:15206890-15206909 | None:intergenic | 45.0% |
| ATCACCATGGAACTGCAATG+AGG | - | chr6_4:15206929-15206948 | Msa0978970:intron | 45.0% | |
| GATTCCTCATTGCAGTTCCA+TGG | + | chr6_4:15206936-15206955 | None:intergenic | 45.0% | |
| !! | TTATATCAAAATAAAAATTA+AGG | - | chr6_4:15204325-15204344 | Msa0978970:intron | 5.0% |
| !! | AATAAAATGAAAATAATTAT+TGG | - | chr6_4:15204386-15204405 | Msa0978970:intron | 5.0% |
| !!! | TATTTTTATTACAAAATTAA+AGG | - | chr6_4:15204581-15204600 | Msa0978970:intron | 5.0% |
| TGTTGGGTTAAGACCCTGCT+TGG | - | chr6_4:15204251-15204270 | Msa0978970:intron | 50.0% | |
| CTAGCGATAAACGAGGTGGA+TGG | - | chr6_4:15204791-15204810 | Msa0978970:intron | 50.0% | |
| ACTATGTGGGGTCTGCTACA+TGG | + | chr6_4:15204856-15204875 | None:intergenic | 50.0% | |
| ! | GTTTGGATGGAGCGTTTCAG+AGG | - | chr6_4:15205019-15205038 | Msa0978970:intron | 50.0% |
| !!! | ATGGAGGGGAGAGTTTTGGA+AGG | - | chr6_4:15205045-15205064 | Msa0978970:intron | 50.0% |
| CCCCTCGTGACCTTACAAAA+TGG | - | chr6_4:15205219-15205238 | Msa0978970:intron | 50.0% | |
| ! | GCCCATTTTGTAAGGTCACG+AGG | + | chr6_4:15205224-15205243 | None:intergenic | 50.0% |
| ! | TTAGTCGGCAGACTAGTCCA+TGG | + | chr6_4:15205246-15205265 | None:intergenic | 50.0% |
| ! | TTGGTAACCGAGTTCGATCC+GGG | + | chr6_4:15205320-15205339 | None:intergenic | 50.0% |
| !! | GTTGGTAACCGAGTTCGATC+CGG | + | chr6_4:15205321-15205340 | None:intergenic | 50.0% |
| ! | GATGCCAAAAAGAAGGCACG+AGG | - | chr6_4:15205621-15205640 | Msa0978970:intron | 50.0% |
| CAATCGAAACCGTTGCGTGA+AGG | + | chr6_4:15205992-15206011 | None:intergenic | 50.0% | |
| GCTGTTTGACAACACTAGCC+AGG | + | chr6_4:15206117-15206136 | None:intergenic | 50.0% | |
| CCCACTAGTAGAGTGAGCTT+AGG | - | chr6_4:15206292-15206311 | Msa0978970:intron | 50.0% | |
| TATGAAGCACGGATGCTCCT+CGG | + | chr6_4:15206753-15206772 | None:intergenic | 50.0% | |
| CATTTGCAGGCTTGACACCA+AGG | - | chr6_4:15206870-15206889 | Msa0978970:intron | 50.0% | |
| ! | CTCACTCTACTAGTGGGCCA+GGG | + | chr6_4:15206289-15206308 | None:intergenic | 55.0% |
| ACACGATACATGTCCGACCC+TGG | - | chr6_4:15206715-15206734 | Msa0978970:intron | 55.0% | |
| CACGATACATGTCCGACCCT+GGG | - | chr6_4:15206716-15206735 | Msa0978970:intron | 55.0% | |
| GCTTGACACCAAGGAGAGGT+GGG | - | chr6_4:15206879-15206898 | Msa0978970:intron | 55.0% | |
| TCCACCACCCGGATCGAACT+CGG | - | chr6_4:15205310-15205329 | Msa0978970:CDS | 60.0% | |
| GTAACCGAGTTCGATCCGGG+TGG | + | chr6_4:15205317-15205336 | None:intergenic | 60.0% | |
| ! | GCTCACTCTACTAGTGGGCC+AGG | + | chr6_4:15206290-15206309 | None:intergenic | 60.0% |
| GATTAGGCGTGTCCCAGGGT+CGG | + | chr6_4:15206731-15206750 | None:intergenic | 60.0% | |
| ! | CTCGGATTAGGCGTGTCCCA+GGG | + | chr6_4:15206735-15206754 | None:intergenic | 60.0% |
| GCACGGATGCTCCTCGGATT+AGG | + | chr6_4:15206747-15206766 | None:intergenic | 60.0% | |
| GCAGGCTTGACACCAAGGAG+AGG | - | chr6_4:15206875-15206894 | Msa0978970:intron | 60.0% | |
| GGCTTGACACCAAGGAGAGG+TGG | - | chr6_4:15206878-15206897 | Msa0978970:intron | 60.0% | |
| ACCGAGTTCGATCCGGGTGG+TGG | + | chr6_4:15205314-15205333 | None:intergenic | 65.0% | |
| ! | CCTCGGATTAGGCGTGTCCC+AGG | + | chr6_4:15206736-15206755 | None:intergenic | 65.0% |
| CCTGGGACACGCCTAATCCG+AGG | - | chr6_4:15206733-15206752 | Msa0978970:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 15203902 | 15207152 | 15203902 | ID=Msa0978970;Name=Msa0978970 |
| chr6_4 | mRNA | 15203902 | 15207152 | 15203902 | ID=Msa0978970-mRNA-1;Parent=Msa0978970;Name=Msa0978970-mRNA-1;_AED=0.02;_eAED=0.02;_QI=26|1|1|1|1|1|4|231|130 |
| chr6_4 | exon | 15203902 | 15204175 | 15203902 | ID=Msa0978970-mRNA-1:exon:4989;Parent=Msa0978970-mRNA-1 |
| chr6_4 | exon | 15205261 | 15205435 | 15205261 | ID=Msa0978970-mRNA-1:exon:4988;Parent=Msa0978970-mRNA-1 |
| chr6_4 | exon | 15205545 | 15205605 | 15205545 | ID=Msa0978970-mRNA-1:exon:4987;Parent=Msa0978970-mRNA-1 |
| chr6_4 | exon | 15207013 | 15207152 | 15207013 | ID=Msa0978970-mRNA-1:exon:4986;Parent=Msa0978970-mRNA-1 |
| chr6_4 | five_prime_UTR | 15207127 | 15207152 | 15207127 | ID=Msa0978970-mRNA-1:five_prime_utr;Parent=Msa0978970-mRNA-1 |
| chr6_4 | CDS | 15207013 | 15207126 | 15207013 | ID=Msa0978970-mRNA-1:cds;Parent=Msa0978970-mRNA-1 |
| chr6_4 | CDS | 15205545 | 15205605 | 15205545 | ID=Msa0978970-mRNA-1:cds;Parent=Msa0978970-mRNA-1 |
| chr6_4 | CDS | 15205261 | 15205435 | 15205261 | ID=Msa0978970-mRNA-1:cds;Parent=Msa0978970-mRNA-1 |
| chr6_4 | CDS | 15204133 | 15204175 | 15204133 | ID=Msa0978970-mRNA-1:cds;Parent=Msa0978970-mRNA-1 |
| chr6_4 | three_prime_UTR | 15203902 | 15204132 | 15203902 | ID=Msa0978970-mRNA-1:three_prime_utr;Parent=Msa0978970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
