Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981090 | KEH27853.1 | 62.319 | 207 | 16 | 4 | 18 | 162 | 10 | 216 | 4.57e-74 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981090 | A0A072UFJ6 | 62.319 | 207 | 16 | 4 | 18 | 162 | 10 | 216 | 2.18e-74 | 234 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0444180 | Msa0981090 | 0.821677 | 3.555330e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981090 | MtrunA17_Chr5g0419131 | 92.135 | 89 | 7 | 0 | 12 | 100 | 3 | 91 | 4.15e-55 | 176 |
| Msa0981090 | MtrunA17_Chr5g0419131 | 79.070 | 86 | 12 | 1 | 77 | 162 | 136 | 215 | 2.41e-39 | 135 |
| Msa0981090 | MtrunA17_Chr4g0043161 | 83.529 | 85 | 14 | 0 | 16 | 100 | 51 | 135 | 9.71e-47 | 155 |
| Msa0981090 | MtrunA17_Chr4g0043161 | 58.140 | 86 | 30 | 1 | 77 | 162 | 180 | 259 | 3.15e-27 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981090 | AT5G39220.1 | 40.796 | 201 | 56 | 4 | 25 | 162 | 67 | 267 | 3.52e-44 | 149 |
| Msa0981090 | AT1G13820.1 | 71.765 | 85 | 24 | 0 | 16 | 100 | 60 | 144 | 7.00e-41 | 141 |
| Msa0981090 | AT1G13820.1 | 54.651 | 86 | 33 | 1 | 77 | 162 | 189 | 268 | 2.03e-24 | 97.8 |
| Msa0981090 | AT5G39220.2 | 37.811 | 201 | 54 | 5 | 25 | 162 | 67 | 259 | 7.88e-36 | 127 |
Find 44 sgRNAs with CRISPR-Local
Find 404 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTAGGCATGACTGTAAA+TGG | 0.209654 | 6_4:+20002074 | None:intergenic |
| GGTTGGGGTTTCTCTGATTT+AGG | 0.215057 | 6_4:-20000717 | Msa0981090:intron |
| GGCTATCGACATACTTGGTT+GGG | 0.251888 | 6_4:-20000733 | Msa0981090:CDS |
| TTGAATATACCTTTCTTATG+AGG | 0.323576 | 6_4:+19999818 | None:intergenic |
| AAAACGCAACCACTTCTATC+AGG | 0.408484 | 6_4:-20000568 | Msa0981090:intron |
| TATTCAGTTCATGTTTAGAA+TGG | 0.414992 | 6_4:-20000800 | Msa0981090:intron |
| GGGCTATCGACATACTTGGT+TGG | 0.432068 | 6_4:-20000734 | Msa0981090:CDS |
| TATCCATTGCTGGAAGAGTC+TGG | 0.448785 | 6_4:-20000768 | Msa0981090:CDS |
| AAACCGTGTAGAAGAACAAT+TGG | 0.456619 | 6_4:+20000907 | None:intergenic |
| GAGATACGGATATCCATTGC+TGG | 0.477064 | 6_4:-20000778 | Msa0981090:CDS |
| TCCTTACGCACCATCCTTGA+CGG | 0.477641 | 6_4:-20000124 | Msa0981090:CDS |
| GCTTGCATTGCTTATTGCCA+TGG | 0.478104 | 6_4:-19999894 | Msa0981090:CDS |
| TGAATATACCTTTCTTATGA+GGG | 0.484063 | 6_4:+19999819 | None:intergenic |
| CTTGACACAACTGCTGATGA+TGG | 0.486311 | 6_4:+20000954 | None:intergenic |
| ATGTATTCATTTGTCTCGAA+GGG | 0.489070 | 6_4:+19999759 | None:intergenic |
| GGTTCCTTGTTCTGCACCAG+TGG | 0.497350 | 6_4:+20000931 | None:intergenic |
| GTTAGTGAAGGTCAAATAGT+TGG | 0.503815 | 6_4:+20000150 | None:intergenic |
| GCATTGCTTATTGCCATGGT+GGG | 0.516840 | 6_4:-19999890 | Msa0981090:CDS |
| AATGTATTCATTTGTCTCGA+AGG | 0.517559 | 6_4:+19999758 | None:intergenic |
| CAGCAGTTGTGTCAAGCCAC+TGG | 0.529441 | 6_4:-20000947 | Msa0981090:CDS |
| CCCGTCAAGGATGGTGCGTA+AGG | 0.540263 | 6_4:+20000123 | None:intergenic |
| AATTGCACCCCTCATAAGAA+AGG | 0.542107 | 6_4:-19999827 | Msa0981090:CDS |
| ACTTGGGCTATCGACATACT+TGG | 0.543897 | 6_4:-20000738 | Msa0981090:CDS |
| TTCTTCTACACGGTTTCGAT+AGG | 0.544486 | 6_4:-20000900 | Msa0981090:intron |
| GCTATCGACATACTTGGTTG+GGG | 0.547619 | 6_4:-20000732 | Msa0981090:CDS |
| TAGTTGGCATATAAGCGTAA+TGG | 0.554089 | 6_4:+20000166 | None:intergenic |
| CCTCCAATTGTTCTTCTACA+CGG | 0.558051 | 6_4:-20000910 | Msa0981090:CDS |
| TTGACACAACTGCTGATGAT+GGG | 0.564698 | 6_4:+20000955 | None:intergenic |
| CAAGCCACTGGTGCAGAACA+AGG | 0.564745 | 6_4:-20000935 | Msa0981090:CDS |
| CCGTGTAGAAGAACAATTGG+AGG | 0.565041 | 6_4:+20000910 | None:intergenic |
| CACATTAGTCCCGTCAAGGA+TGG | 0.568377 | 6_4:+20000114 | None:intergenic |
| TCATGTTTAGAATGGAGATA+CGG | 0.568758 | 6_4:-20000792 | Msa0981090:CDS |
| AAACCAGACTCTTCCAGCAA+TGG | 0.570685 | 6_4:+20000765 | None:intergenic |
| TGCATTGCTTATTGCCATGG+TGG | 0.580841 | 6_4:-19999891 | Msa0981090:CDS |
| CCTTACGCACCATCCTTGAC+GGG | 0.586415 | 6_4:-20000123 | Msa0981090:CDS |
| GAATATACCTTTCTTATGAG+GGG | 0.592750 | 6_4:+19999820 | None:intergenic |
| ACATAAGAACCTGATAGAAG+TGG | 0.611962 | 6_4:+20000559 | None:intergenic |
| AACTCACATTAGTCCCGTCA+AGG | 0.617765 | 6_4:+20000110 | None:intergenic |
| AAATCTTCCTCCTTGTGATG+TGG | 0.628137 | 6_4:-20000595 | Msa0981090:CDS |
| GCGTAAGGACATGTTAGTGA+AGG | 0.631032 | 6_4:+20000138 | None:intergenic |
| TGTATTCATTTGTCTCGAAG+GGG | 0.644877 | 6_4:+19999760 | None:intergenic |
| ATGGCAATAAGCAATGCAAG+CGG | 0.692723 | 6_4:+19999896 | None:intergenic |
| TTTGATACCACATCACAAGG+AGG | 0.723641 | 6_4:+20000588 | None:intergenic |
| ACAGTAGCATCATCCCACCA+TGG | 0.730059 | 6_4:+19999877 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGTAAATTTTTTAGAA+TGG | - | chr6_4:19999830-19999849 | Msa0981090:CDS | 10.0% |
| !!! | AATTTGTAAATTTTTTAGAA+TGG | - | chr6_4:19999830-19999849 | Msa0981090:CDS | 10.0% |
| !!! | ATTAACATGATATTTGTTTT+TGG | - | chr6_4:20000015-20000034 | Msa0981090:intron | 15.0% |
| !!! | TTAACATGATATTTGTTTTT+GGG | - | chr6_4:20000016-20000035 | Msa0981090:intron | 15.0% |
| !!! | TAACAAAATTACTATTTCTT+TGG | - | chr6_4:20000660-20000679 | Msa0981090:intron | 15.0% |
| !!! | ATTGCTATTCAAAATAAAAT+TGG | + | chr6_4:20000735-20000754 | None:intergenic | 15.0% |
| !! | AATAAGACAATATAAAATTC+AGG | + | chr6_4:20001015-20001034 | None:intergenic | 15.0% |
| !! | AAAATGTTGAAACATATATT+GGG | + | chr6_4:20001894-20001913 | None:intergenic | 15.0% |
| !!! | TATGTTAATTTTATGGATTT+TGG | - | chr6_4:20002044-20002063 | Msa0981090:intron | 15.0% |
| !!! | ATTAACATGATATTTGTTTT+TGG | - | chr6_4:20000015-20000034 | Msa0981090:intron | 15.0% |
| !!! | TTAACATGATATTTGTTTTT+GGG | - | chr6_4:20000016-20000035 | Msa0981090:intron | 15.0% |
| !!! | TAACAAAATTACTATTTCTT+TGG | - | chr6_4:20000660-20000679 | Msa0981090:intron | 15.0% |
| !!! | ATTGCTATTCAAAATAAAAT+TGG | + | chr6_4:20000735-20000754 | None:intergenic | 15.0% |
| !! | AATAAGACAATATAAAATTC+AGG | + | chr6_4:20001015-20001034 | None:intergenic | 15.0% |
| !! | AAAATGTTGAAACATATATT+GGG | + | chr6_4:20001894-20001913 | None:intergenic | 15.0% |
| !!! | TATGTTAATTTTATGGATTT+TGG | - | chr6_4:20002044-20002063 | Msa0981090:intron | 15.0% |
| !!! | AAATTTACAAATTTTACTCC+TGG | + | chr6_4:19999823-19999842 | None:intergenic | 20.0% |
| !! | ATTCATACTTTCTTTAACAT+TGG | - | chr6_4:19999893-19999912 | Msa0981090:CDS | 20.0% |
| !!! | TAACATGATATTTGTTTTTG+GGG | - | chr6_4:20000017-20000036 | Msa0981090:intron | 20.0% |
| !!! | GAACTATAAAATTTTGTTGT+TGG | - | chr6_4:20000615-20000634 | Msa0981090:intron | 20.0% |
| !!! | TATAAAATTTTGTTGTTGGT+TGG | - | chr6_4:20000619-20000638 | Msa0981090:intron | 20.0% |
| !!! | TTACTATTTCTTTGGATTAA+TGG | - | chr6_4:20000668-20000687 | Msa0981090:intron | 20.0% |
| !! | TATCAAATCGGTTAAATTAT+TGG | - | chr6_4:20001456-20001475 | Msa0981090:intron | 20.0% |
| !!! | TCACATTTTTATCTTCATAT+TGG | - | chr6_4:20001775-20001794 | Msa0981090:intron | 20.0% |
| !!! | CACATTTTTATCTTCATATT+GGG | - | chr6_4:20001776-20001795 | Msa0981090:intron | 20.0% |
| !! | CAAAATGTTGAAACATATAT+TGG | + | chr6_4:20001895-20001914 | None:intergenic | 20.0% |
| !!! | AAATTTACAAATTTTACTCC+TGG | + | chr6_4:19999823-19999842 | None:intergenic | 20.0% |
| !! | ATTCATACTTTCTTTAACAT+TGG | - | chr6_4:19999893-19999912 | Msa0981090:CDS | 20.0% |
| !!! | TAACATGATATTTGTTTTTG+GGG | - | chr6_4:20000017-20000036 | Msa0981090:intron | 20.0% |
| !!! | GAACTATAAAATTTTGTTGT+TGG | - | chr6_4:20000615-20000634 | Msa0981090:intron | 20.0% |
| !!! | TATAAAATTTTGTTGTTGGT+TGG | - | chr6_4:20000619-20000638 | Msa0981090:intron | 20.0% |
| !!! | TTACTATTTCTTTGGATTAA+TGG | - | chr6_4:20000668-20000687 | Msa0981090:intron | 20.0% |
| !! | TATCAAATCGGTTAAATTAT+TGG | - | chr6_4:20001456-20001475 | Msa0981090:intron | 20.0% |
| !!! | TCACATTTTTATCTTCATAT+TGG | - | chr6_4:20001775-20001794 | Msa0981090:intron | 20.0% |
| !!! | CACATTTTTATCTTCATATT+GGG | - | chr6_4:20001776-20001795 | Msa0981090:intron | 20.0% |
| !! | CAAAATGTTGAAACATATAT+TGG | + | chr6_4:20001895-20001914 | None:intergenic | 20.0% |
| !!! | TGATATATTTGGCTTTTAAC+TGG | - | chr6_4:19999785-19999804 | Msa0981090:CDS | 25.0% |
| ! | ATCAAGAGACCAATATAAAT+TGG | + | chr6_4:19999938-19999957 | None:intergenic | 25.0% |
| !! | AATTTTTGTTGCTCGAAAAA+CGG | - | chr6_4:20000701-20000720 | Msa0981090:intron | 25.0% |
| !!! | GAATGTTTGATTTGTGTTTA+TGG | - | chr6_4:20000765-20000784 | Msa0981090:CDS | 25.0% |
| ! | TTGTTTCGTATGATATGATT+AGG | - | chr6_4:20000839-20000858 | Msa0981090:intron | 25.0% |
| ! | TATTCAGTTCATGTTTAGAA+TGG | - | chr6_4:20001034-20001053 | Msa0981090:intron | 25.0% |
| ! | TGACATTCAAGATAATTGAA+TGG | - | chr6_4:20001394-20001413 | Msa0981090:intron | 25.0% |
| ! | TAAACTATCATCTGAAGAAT+TGG | - | chr6_4:20001493-20001512 | Msa0981090:intron | 25.0% |
| !!! | CTTAATGTTTTAGTAAGATG+CGG | + | chr6_4:20001575-20001594 | None:intergenic | 25.0% |
| ! | TTTGCATATATCCTCTTTAT+AGG | - | chr6_4:20001911-20001930 | Msa0981090:intron | 25.0% |
| ! | TGAATATACCTTTCTTATGA+GGG | + | chr6_4:20002018-20002037 | None:intergenic | 25.0% |
| ! | TTGAATATACCTTTCTTATG+AGG | + | chr6_4:20002019-20002038 | None:intergenic | 25.0% |
| !!! | TGATATATTTGGCTTTTAAC+TGG | - | chr6_4:19999785-19999804 | Msa0981090:CDS | 25.0% |
| ! | ATCAAGAGACCAATATAAAT+TGG | + | chr6_4:19999938-19999957 | None:intergenic | 25.0% |
| !! | AATTTTTGTTGCTCGAAAAA+CGG | - | chr6_4:20000701-20000720 | Msa0981090:intron | 25.0% |
| !!! | GAATGTTTGATTTGTGTTTA+TGG | - | chr6_4:20000765-20000784 | Msa0981090:CDS | 25.0% |
| ! | TTGTTTCGTATGATATGATT+AGG | - | chr6_4:20000839-20000858 | Msa0981090:intron | 25.0% |
| ! | TATTCAGTTCATGTTTAGAA+TGG | - | chr6_4:20001034-20001053 | Msa0981090:intron | 25.0% |
| ! | TGACATTCAAGATAATTGAA+TGG | - | chr6_4:20001394-20001413 | Msa0981090:intron | 25.0% |
| ! | TAAACTATCATCTGAAGAAT+TGG | - | chr6_4:20001493-20001512 | Msa0981090:intron | 25.0% |
| !!! | CTTAATGTTTTAGTAAGATG+CGG | + | chr6_4:20001575-20001594 | None:intergenic | 25.0% |
| ! | TTTGCATATATCCTCTTTAT+AGG | - | chr6_4:20001911-20001930 | Msa0981090:intron | 25.0% |
| ! | TGAATATACCTTTCTTATGA+GGG | + | chr6_4:20002018-20002037 | None:intergenic | 25.0% |
| ! | TTGAATATACCTTTCTTATG+AGG | + | chr6_4:20002019-20002038 | None:intergenic | 25.0% |
| GCCTAAATGTGTGATATATT+TGG | - | chr6_4:19999774-19999793 | Msa0981090:CDS | 30.0% | |
| GCCAAATATATCACACATTT+AGG | + | chr6_4:19999778-19999797 | None:intergenic | 30.0% | |
| ATGCCAGTTCCAATTTATAT+TGG | - | chr6_4:19999926-19999945 | Msa0981090:intron | 30.0% | |
| AGACCAATATAAATTGGAAC+TGG | + | chr6_4:19999932-19999951 | None:intergenic | 30.0% | |
| TCTTGATATTGTAACCATGA+GGG | - | chr6_4:19999951-19999970 | Msa0981090:intron | 30.0% | |
| !! | AACAAATCAAAGTGTTGTCA+TGG | - | chr6_4:20000055-20000074 | Msa0981090:intron | 30.0% |
| !!! | GGTTGATTCGGTTTTATTTT+TGG | - | chr6_4:20000156-20000175 | Msa0981090:CDS | 30.0% |
| !!! | TGATTCGGTTTTATTTTTGG+TGG | - | chr6_4:20000159-20000178 | Msa0981090:CDS | 30.0% |
| !!! | TTTTTTAGTGAGTTGGTTCT+TGG | - | chr6_4:20000513-20000532 | Msa0981090:intron | 30.0% |
| ! | AAAAAGAGTACAAATGGAGA+GGG | + | chr6_4:20000564-20000583 | None:intergenic | 30.0% |
| ! | AAAAAAGAGTACAAATGGAG+AGG | + | chr6_4:20000565-20000584 | None:intergenic | 30.0% |
| !!! | AAAATTTTGTTGTTGGTTGG+TGG | - | chr6_4:20000622-20000641 | Msa0981090:intron | 30.0% |
| AACAGCAAAAATTAGTTGTG+AGG | + | chr6_4:20000805-20000824 | None:intergenic | 30.0% | |
| ! | TCATGTTTAGAATGGAGATA+CGG | - | chr6_4:20001042-20001061 | Msa0981090:intron | 30.0% |
| AAAAATGCCTTACAGAGAAA+GGG | + | chr6_4:20001183-20001202 | None:intergenic | 30.0% | |
| AAAAAATGCCTTACAGAGAA+AGG | + | chr6_4:20001184-20001203 | None:intergenic | 30.0% | |
| TTATAGGTTTGATCAACACT+CGG | + | chr6_4:20001333-20001352 | None:intergenic | 30.0% | |
| AATTCAATGCTTACACTGTT+TGG | - | chr6_4:20001618-20001637 | Msa0981090:intron | 30.0% | |
| !! | CTAGTAGTCATTTTAAGGAT+AGG | + | chr6_4:20001752-20001771 | None:intergenic | 30.0% |
| CTATCCTTAAAATGACTACT+AGG | - | chr6_4:20001750-20001769 | Msa0981090:intron | 30.0% | |
| TATCTTCATATTGGGACATT+AGG | - | chr6_4:20001784-20001803 | Msa0981090:intron | 30.0% | |
| ! | TATTGGGTTGTTAAAACTCT+CGG | + | chr6_4:20001878-20001897 | None:intergenic | 30.0% |
| CATATATCCTCTTTATAGGT+GGG | - | chr6_4:20001915-20001934 | Msa0981090:intron | 30.0% | |
| !!! | ACTGTTGATTTTATGACTAG+TGG | - | chr6_4:20001975-20001994 | Msa0981090:intron | 30.0% |
| GAATATACCTTTCTTATGAG+GGG | + | chr6_4:20002017-20002036 | None:intergenic | 30.0% | |
| ATGTATTCATTTGTCTCGAA+GGG | + | chr6_4:20002078-20002097 | None:intergenic | 30.0% | |
| AATGTATTCATTTGTCTCGA+AGG | + | chr6_4:20002079-20002098 | None:intergenic | 30.0% | |
| GCCTAAATGTGTGATATATT+TGG | - | chr6_4:19999774-19999793 | Msa0981090:CDS | 30.0% | |
| GCCAAATATATCACACATTT+AGG | + | chr6_4:19999778-19999797 | None:intergenic | 30.0% | |
| ATGCCAGTTCCAATTTATAT+TGG | - | chr6_4:19999926-19999945 | Msa0981090:intron | 30.0% | |
| AGACCAATATAAATTGGAAC+TGG | + | chr6_4:19999932-19999951 | None:intergenic | 30.0% | |
| TCTTGATATTGTAACCATGA+GGG | - | chr6_4:19999951-19999970 | Msa0981090:intron | 30.0% | |
| !! | AACAAATCAAAGTGTTGTCA+TGG | - | chr6_4:20000055-20000074 | Msa0981090:intron | 30.0% |
| !!! | GGTTGATTCGGTTTTATTTT+TGG | - | chr6_4:20000156-20000175 | Msa0981090:CDS | 30.0% |
| !!! | TGATTCGGTTTTATTTTTGG+TGG | - | chr6_4:20000159-20000178 | Msa0981090:CDS | 30.0% |
| !!! | TTTTTTAGTGAGTTGGTTCT+TGG | - | chr6_4:20000513-20000532 | Msa0981090:intron | 30.0% |
| ! | AAAAAGAGTACAAATGGAGA+GGG | + | chr6_4:20000564-20000583 | None:intergenic | 30.0% |
| ! | AAAAAAGAGTACAAATGGAG+AGG | + | chr6_4:20000565-20000584 | None:intergenic | 30.0% |
| !!! | AAAATTTTGTTGTTGGTTGG+TGG | - | chr6_4:20000622-20000641 | Msa0981090:intron | 30.0% |
| AACAGCAAAAATTAGTTGTG+AGG | + | chr6_4:20000805-20000824 | None:intergenic | 30.0% | |
| ! | TCATGTTTAGAATGGAGATA+CGG | - | chr6_4:20001042-20001061 | Msa0981090:intron | 30.0% |
| AAAAATGCCTTACAGAGAAA+GGG | + | chr6_4:20001183-20001202 | None:intergenic | 30.0% | |
| AAAAAATGCCTTACAGAGAA+AGG | + | chr6_4:20001184-20001203 | None:intergenic | 30.0% | |
| TTATAGGTTTGATCAACACT+CGG | + | chr6_4:20001333-20001352 | None:intergenic | 30.0% | |
| AATTCAATGCTTACACTGTT+TGG | - | chr6_4:20001618-20001637 | Msa0981090:intron | 30.0% | |
| !! | CTAGTAGTCATTTTAAGGAT+AGG | + | chr6_4:20001752-20001771 | None:intergenic | 30.0% |
| CTATCCTTAAAATGACTACT+AGG | - | chr6_4:20001750-20001769 | Msa0981090:intron | 30.0% | |
| TATCTTCATATTGGGACATT+AGG | - | chr6_4:20001784-20001803 | Msa0981090:intron | 30.0% | |
| ! | TATTGGGTTGTTAAAACTCT+CGG | + | chr6_4:20001878-20001897 | None:intergenic | 30.0% |
| CATATATCCTCTTTATAGGT+GGG | - | chr6_4:20001915-20001934 | Msa0981090:intron | 30.0% | |
| !!! | ACTGTTGATTTTATGACTAG+TGG | - | chr6_4:20001975-20001994 | Msa0981090:intron | 30.0% |
| GAATATACCTTTCTTATGAG+GGG | + | chr6_4:20002017-20002036 | None:intergenic | 30.0% | |
| ATGTATTCATTTGTCTCGAA+GGG | + | chr6_4:20002078-20002097 | None:intergenic | 30.0% | |
| AATGTATTCATTTGTCTCGA+AGG | + | chr6_4:20002079-20002098 | None:intergenic | 30.0% | |
| CATTTAGGCATGACTGTAAA+TGG | + | chr6_4:19999763-19999782 | None:intergenic | 35.0% | |
| !! | AACTGGTTTGTTAAGATTCC+AGG | - | chr6_4:19999802-19999821 | Msa0981090:CDS | 35.0% |
| CTCTTGATATTGTAACCATG+AGG | - | chr6_4:19999950-19999969 | Msa0981090:intron | 35.0% | |
| CTTGATATTGTAACCATGAG+GGG | - | chr6_4:19999952-19999971 | Msa0981090:intron | 35.0% | |
| TAGATATAATAAGCCCCTCA+TGG | + | chr6_4:19999968-19999987 | None:intergenic | 35.0% | |
| AGGGGCTTATTATATCTATC+TGG | - | chr6_4:19999970-19999989 | Msa0981090:intron | 35.0% | |
| !!! | CATGATATTTGTTTTTGGGG+TGG | - | chr6_4:20000020-20000039 | Msa0981090:intron | 35.0% |
| CAACGTGTTTATTCTACGAA+TGG | - | chr6_4:20000106-20000125 | Msa0981090:intron | 35.0% | |
| !!! | TGGTGTTTTGTGTGTTGTTT+GGG | - | chr6_4:20000179-20000198 | Msa0981090:CDS | 35.0% |
| !! | TTGACAGTAGCTTGTTTAGT+GGG | - | chr6_4:20000373-20000392 | Msa0981090:intron | 35.0% |
| !! | GTGTTATTTAGTTCTGCTTC+AGG | - | chr6_4:20000473-20000492 | Msa0981090:intron | 35.0% |
| !!! | TGCTTCAGGCTTTGTTTTTA+GGG | - | chr6_4:20000487-20000506 | Msa0981090:intron | 35.0% |
| ! | GGAGGAAAAAAGAGTACAAA+TGG | + | chr6_4:20000570-20000589 | None:intergenic | 35.0% |
| AAGATGTACTTAACCTGCAT+AGG | + | chr6_4:20000591-20000610 | None:intergenic | 35.0% | |
| AAACCGTGTAGAAGAACAAT+TGG | + | chr6_4:20000930-20000949 | None:intergenic | 35.0% | |
| AAAATGCCTTACAGAGAAAG+GGG | + | chr6_4:20001182-20001201 | None:intergenic | 35.0% | |
| ACATAAGAACCTGATAGAAG+TGG | + | chr6_4:20001278-20001297 | None:intergenic | 35.0% | |
| TATAGGTTTGATCAACACTC+GGG | + | chr6_4:20001332-20001351 | None:intergenic | 35.0% | |
| TGTCTGTGACAGTACTTTAT+AGG | + | chr6_4:20001349-20001368 | None:intergenic | 35.0% | |
| TTGAATGTAACCACATGTGT+CGG | - | chr6_4:20001423-20001442 | Msa0981090:intron | 35.0% | |
| ! | GGTGCTACATAGTATCAAAT+CGG | - | chr6_4:20001444-20001463 | Msa0981090:intron | 35.0% |
| TAGTTGGCATATAAGCGTAA+TGG | + | chr6_4:20001671-20001690 | None:intergenic | 35.0% | |
| GTTAGTGAAGGTCAAATAGT+TGG | + | chr6_4:20001687-20001706 | None:intergenic | 35.0% | |
| !! | GATGCCTAGTAGTCATTTTA+AGG | + | chr6_4:20001757-20001776 | None:intergenic | 35.0% |
| ! | ACATGTTCCCTTTGATAACT+TGG | - | chr6_4:20001808-20001827 | Msa0981090:intron | 35.0% |
| TGTGATGCCAAGTTATCAAA+GGG | + | chr6_4:20001818-20001837 | None:intergenic | 35.0% | |
| ATGTGATGCCAAGTTATCAA+AGG | + | chr6_4:20001819-20001838 | None:intergenic | 35.0% | |
| ATGATCAAGAACTTTGTGCT+TGG | - | chr6_4:20001837-20001856 | Msa0981090:intron | 35.0% | |
| GCATATATCCTCTTTATAGG+TGG | - | chr6_4:20001914-20001933 | Msa0981090:intron | 35.0% | |
| !! | GTTGATTTTATGACTAGTGG+CGG | - | chr6_4:20001978-20001997 | Msa0981090:intron | 35.0% |
| TGTATTCATTTGTCTCGAAG+GGG | + | chr6_4:20002077-20002096 | None:intergenic | 35.0% | |
| CATTTAGGCATGACTGTAAA+TGG | + | chr6_4:19999763-19999782 | None:intergenic | 35.0% | |
| !! | AACTGGTTTGTTAAGATTCC+AGG | - | chr6_4:19999802-19999821 | Msa0981090:CDS | 35.0% |
| CTCTTGATATTGTAACCATG+AGG | - | chr6_4:19999950-19999969 | Msa0981090:intron | 35.0% | |
| CTTGATATTGTAACCATGAG+GGG | - | chr6_4:19999952-19999971 | Msa0981090:intron | 35.0% | |
| TAGATATAATAAGCCCCTCA+TGG | + | chr6_4:19999968-19999987 | None:intergenic | 35.0% | |
| AGGGGCTTATTATATCTATC+TGG | - | chr6_4:19999970-19999989 | Msa0981090:intron | 35.0% | |
| !!! | CATGATATTTGTTTTTGGGG+TGG | - | chr6_4:20000020-20000039 | Msa0981090:intron | 35.0% |
| CAACGTGTTTATTCTACGAA+TGG | - | chr6_4:20000106-20000125 | Msa0981090:intron | 35.0% | |
| !!! | TGGTGTTTTGTGTGTTGTTT+GGG | - | chr6_4:20000179-20000198 | Msa0981090:CDS | 35.0% |
| !! | TTGACAGTAGCTTGTTTAGT+GGG | - | chr6_4:20000373-20000392 | Msa0981090:intron | 35.0% |
| !! | GTGTTATTTAGTTCTGCTTC+AGG | - | chr6_4:20000473-20000492 | Msa0981090:intron | 35.0% |
| !!! | TGCTTCAGGCTTTGTTTTTA+GGG | - | chr6_4:20000487-20000506 | Msa0981090:intron | 35.0% |
| ! | GGAGGAAAAAAGAGTACAAA+TGG | + | chr6_4:20000570-20000589 | None:intergenic | 35.0% |
| AAGATGTACTTAACCTGCAT+AGG | + | chr6_4:20000591-20000610 | None:intergenic | 35.0% | |
| AAACCGTGTAGAAGAACAAT+TGG | + | chr6_4:20000930-20000949 | None:intergenic | 35.0% | |
| AAAATGCCTTACAGAGAAAG+GGG | + | chr6_4:20001182-20001201 | None:intergenic | 35.0% | |
| ACATAAGAACCTGATAGAAG+TGG | + | chr6_4:20001278-20001297 | None:intergenic | 35.0% | |
| TATAGGTTTGATCAACACTC+GGG | + | chr6_4:20001332-20001351 | None:intergenic | 35.0% | |
| TGTCTGTGACAGTACTTTAT+AGG | + | chr6_4:20001349-20001368 | None:intergenic | 35.0% | |
| TTGAATGTAACCACATGTGT+CGG | - | chr6_4:20001423-20001442 | Msa0981090:intron | 35.0% | |
| ! | GGTGCTACATAGTATCAAAT+CGG | - | chr6_4:20001444-20001463 | Msa0981090:intron | 35.0% |
| TAGTTGGCATATAAGCGTAA+TGG | + | chr6_4:20001671-20001690 | None:intergenic | 35.0% | |
| GTTAGTGAAGGTCAAATAGT+TGG | + | chr6_4:20001687-20001706 | None:intergenic | 35.0% | |
| !! | GATGCCTAGTAGTCATTTTA+AGG | + | chr6_4:20001757-20001776 | None:intergenic | 35.0% |
| ! | ACATGTTCCCTTTGATAACT+TGG | - | chr6_4:20001808-20001827 | Msa0981090:intron | 35.0% |
| TGTGATGCCAAGTTATCAAA+GGG | + | chr6_4:20001818-20001837 | None:intergenic | 35.0% | |
| ATGTGATGCCAAGTTATCAA+AGG | + | chr6_4:20001819-20001838 | None:intergenic | 35.0% | |
| ATGATCAAGAACTTTGTGCT+TGG | - | chr6_4:20001837-20001856 | Msa0981090:intron | 35.0% | |
| GCATATATCCTCTTTATAGG+TGG | - | chr6_4:20001914-20001933 | Msa0981090:intron | 35.0% | |
| !! | GTTGATTTTATGACTAGTGG+CGG | - | chr6_4:20001978-20001997 | Msa0981090:intron | 35.0% |
| TGTATTCATTTGTCTCGAAG+GGG | + | chr6_4:20002077-20002096 | None:intergenic | 35.0% | |
| !! | TCAAAGTGTTGTCATGGCAA+TGG | - | chr6_4:20000061-20000080 | Msa0981090:intron | 40.0% |
| !! | TTTTGTCTTGGGGGTTGATT+CGG | - | chr6_4:20000144-20000163 | Msa0981090:CDS | 40.0% |
| !! | GTGGTGTTTTGTGTGTTGTT+TGG | - | chr6_4:20000178-20000197 | Msa0981090:CDS | 40.0% |
| !!! | GGTGTTTTGTGTGTTGTTTG+GGG | - | chr6_4:20000180-20000199 | Msa0981090:CDS | 40.0% |
| !!! | GTGTTTTGTGTGTTGTTTGG+GGG | - | chr6_4:20000181-20000200 | Msa0981090:CDS | 40.0% |
| ATTGTCTGTGTTCCTTGTGT+GGG | - | chr6_4:20000332-20000351 | Msa0981090:intron | 40.0% | |
| !! | GTTGACAGTAGCTTGTTTAG+TGG | - | chr6_4:20000372-20000391 | Msa0981090:intron | 40.0% |
| ! | TTGTTTAGTGGGTCTGTTTG+CGG | - | chr6_4:20000384-20000403 | Msa0981090:intron | 40.0% |
| !!! | CTGCTTCAGGCTTTGTTTTT+AGG | - | chr6_4:20000486-20000505 | Msa0981090:intron | 40.0% |
| !!! | GCTTCAGGCTTTGTTTTTAG+GGG | - | chr6_4:20000488-20000507 | Msa0981090:intron | 40.0% |
| !!! | CTTCAGGCTTTGTTTTTAGG+GGG | - | chr6_4:20000489-20000508 | Msa0981090:intron | 40.0% |
| !!! | TTCAGGCTTTGTTTTTAGGG+GGG | - | chr6_4:20000490-20000509 | Msa0981090:intron | 40.0% |
| !! | TTTAGTGAGTTGGTTCTTGG+TGG | - | chr6_4:20000516-20000535 | Msa0981090:intron | 40.0% |
| !!! | ACTCTTTTTTCCTCCTATGC+AGG | - | chr6_4:20000575-20000594 | Msa0981090:CDS | 40.0% |
| ATGTACTTAACCTGCATAGG+AGG | + | chr6_4:20000588-20000607 | None:intergenic | 40.0% | |
| GCAGGTTAAGTACATCTTGT+TGG | - | chr6_4:20000593-20000612 | Msa0981090:CDS | 40.0% | |
| TTGACACAACTGCTGATGAT+GGG | + | chr6_4:20000882-20000901 | None:intergenic | 40.0% | |
| CCTCCAATTGTTCTTCTACA+CGG | - | chr6_4:20000924-20000943 | Msa0981090:CDS | 40.0% | |
| TTCTTCTACACGGTTTCGAT+AGG | - | chr6_4:20000934-20000953 | Msa0981090:CDS | 40.0% | |
| !!! | AAGAGTCTGGTTTTGAGACT+TGG | - | chr6_4:20001079-20001098 | Msa0981090:intron | 40.0% |
| !!! | AGAGTCTGGTTTTGAGACTT+GGG | - | chr6_4:20001080-20001099 | Msa0981090:intron | 40.0% |
| ! | CAAGGAGGAAGATTTTCTGA+TGG | + | chr6_4:20001234-20001253 | None:intergenic | 40.0% |
| AAATCTTCCTCCTTGTGATG+TGG | - | chr6_4:20001239-20001258 | Msa0981090:intron | 40.0% | |
| TTTGATACCACATCACAAGG+AGG | + | chr6_4:20001249-20001268 | None:intergenic | 40.0% | |
| !! | CGTTTTGATACCACATCACA+AGG | + | chr6_4:20001252-20001271 | None:intergenic | 40.0% |
| AAAACGCAACCACTTCTATC+AGG | - | chr6_4:20001266-20001285 | Msa0981090:intron | 40.0% | |
| ATAGGTTTGATCAACACTCG+GGG | + | chr6_4:20001331-20001350 | None:intergenic | 40.0% | |
| TGTCATTGTCACTGTTGTGT+CGG | + | chr6_4:20001379-20001398 | None:intergenic | 40.0% | |
| CCGATCTAGATATTGACCAT+CGG | + | chr6_4:20001528-20001547 | None:intergenic | 40.0% | |
| CCGATGGTCAATATCTAGAT+CGG | - | chr6_4:20001525-20001544 | Msa0981090:intron | 40.0% | |
| TCAAGAACTTTGTGCTTGGT+TGG | - | chr6_4:20001841-20001860 | Msa0981090:intron | 40.0% | |
| !! | CTTTGTGCTTGGTTGGTAAT+AGG | - | chr6_4:20001848-20001867 | Msa0981090:intron | 40.0% |
| ATGGCAATAAGCAATGCAAG+CGG | + | chr6_4:20001941-20001960 | None:intergenic | 40.0% | |
| AATTGCACCCCTCATAAGAA+AGG | - | chr6_4:20002007-20002026 | Msa0981090:intron | 40.0% | |
| !! | TCAAAGTGTTGTCATGGCAA+TGG | - | chr6_4:20000061-20000080 | Msa0981090:intron | 40.0% |
| !! | TTTTGTCTTGGGGGTTGATT+CGG | - | chr6_4:20000144-20000163 | Msa0981090:CDS | 40.0% |
| !! | GTGGTGTTTTGTGTGTTGTT+TGG | - | chr6_4:20000178-20000197 | Msa0981090:CDS | 40.0% |
| !!! | GGTGTTTTGTGTGTTGTTTG+GGG | - | chr6_4:20000180-20000199 | Msa0981090:CDS | 40.0% |
| !!! | GTGTTTTGTGTGTTGTTTGG+GGG | - | chr6_4:20000181-20000200 | Msa0981090:CDS | 40.0% |
| ATTGTCTGTGTTCCTTGTGT+GGG | - | chr6_4:20000332-20000351 | Msa0981090:intron | 40.0% | |
| !! | GTTGACAGTAGCTTGTTTAG+TGG | - | chr6_4:20000372-20000391 | Msa0981090:intron | 40.0% |
| ! | TTGTTTAGTGGGTCTGTTTG+CGG | - | chr6_4:20000384-20000403 | Msa0981090:intron | 40.0% |
| !!! | CTGCTTCAGGCTTTGTTTTT+AGG | - | chr6_4:20000486-20000505 | Msa0981090:intron | 40.0% |
| !!! | GCTTCAGGCTTTGTTTTTAG+GGG | - | chr6_4:20000488-20000507 | Msa0981090:intron | 40.0% |
| !!! | CTTCAGGCTTTGTTTTTAGG+GGG | - | chr6_4:20000489-20000508 | Msa0981090:intron | 40.0% |
| !!! | TTCAGGCTTTGTTTTTAGGG+GGG | - | chr6_4:20000490-20000509 | Msa0981090:intron | 40.0% |
| !! | TTTAGTGAGTTGGTTCTTGG+TGG | - | chr6_4:20000516-20000535 | Msa0981090:intron | 40.0% |
| !!! | ACTCTTTTTTCCTCCTATGC+AGG | - | chr6_4:20000575-20000594 | Msa0981090:CDS | 40.0% |
| ATGTACTTAACCTGCATAGG+AGG | + | chr6_4:20000588-20000607 | None:intergenic | 40.0% | |
| GCAGGTTAAGTACATCTTGT+TGG | - | chr6_4:20000593-20000612 | Msa0981090:CDS | 40.0% | |
| TTGACACAACTGCTGATGAT+GGG | + | chr6_4:20000882-20000901 | None:intergenic | 40.0% | |
| CCTCCAATTGTTCTTCTACA+CGG | - | chr6_4:20000924-20000943 | Msa0981090:CDS | 40.0% | |
| TTCTTCTACACGGTTTCGAT+AGG | - | chr6_4:20000934-20000953 | Msa0981090:CDS | 40.0% | |
| !!! | AAGAGTCTGGTTTTGAGACT+TGG | - | chr6_4:20001079-20001098 | Msa0981090:intron | 40.0% |
| !!! | AGAGTCTGGTTTTGAGACTT+GGG | - | chr6_4:20001080-20001099 | Msa0981090:intron | 40.0% |
| ! | CAAGGAGGAAGATTTTCTGA+TGG | + | chr6_4:20001234-20001253 | None:intergenic | 40.0% |
| AAATCTTCCTCCTTGTGATG+TGG | - | chr6_4:20001239-20001258 | Msa0981090:intron | 40.0% | |
| TTTGATACCACATCACAAGG+AGG | + | chr6_4:20001249-20001268 | None:intergenic | 40.0% | |
| !! | CGTTTTGATACCACATCACA+AGG | + | chr6_4:20001252-20001271 | None:intergenic | 40.0% |
| AAAACGCAACCACTTCTATC+AGG | - | chr6_4:20001266-20001285 | Msa0981090:intron | 40.0% | |
| ATAGGTTTGATCAACACTCG+GGG | + | chr6_4:20001331-20001350 | None:intergenic | 40.0% | |
| TGTCATTGTCACTGTTGTGT+CGG | + | chr6_4:20001379-20001398 | None:intergenic | 40.0% | |
| CCGATCTAGATATTGACCAT+CGG | + | chr6_4:20001528-20001547 | None:intergenic | 40.0% | |
| CCGATGGTCAATATCTAGAT+CGG | - | chr6_4:20001525-20001544 | Msa0981090:intron | 40.0% | |
| TCAAGAACTTTGTGCTTGGT+TGG | - | chr6_4:20001841-20001860 | Msa0981090:intron | 40.0% | |
| !! | CTTTGTGCTTGGTTGGTAAT+AGG | - | chr6_4:20001848-20001867 | Msa0981090:intron | 40.0% |
| ATGGCAATAAGCAATGCAAG+CGG | + | chr6_4:20001941-20001960 | None:intergenic | 40.0% | |
| AATTGCACCCCTCATAAGAA+AGG | - | chr6_4:20002007-20002026 | Msa0981090:intron | 40.0% | |
| !!! | TGTTTTTGGGGTGGATGAGT+TGG | - | chr6_4:20000029-20000048 | Msa0981090:intron | 45.0% |
| !! | TCGAATCCTCGCTTTTGTCT+TGG | - | chr6_4:20000132-20000151 | Msa0981090:CDS | 45.0% |
| !! | CGAATCCTCGCTTTTGTCTT+GGG | - | chr6_4:20000133-20000152 | Msa0981090:CDS | 45.0% |
| !! | GAATCCTCGCTTTTGTCTTG+GGG | - | chr6_4:20000134-20000153 | Msa0981090:CDS | 45.0% |
| !! | AATCCTCGCTTTTGTCTTGG+GGG | - | chr6_4:20000135-20000154 | Msa0981090:CDS | 45.0% |
| !!! | TTTTGTGTGTTGTTTGGGGG+TGG | - | chr6_4:20000184-20000203 | Msa0981090:CDS | 45.0% |
| AGTGGAGTTTGTGCTGTCAT+AGG | - | chr6_4:20000241-20000260 | Msa0981090:intron | 45.0% | |
| GTTTGTGCTGTCATAGGTTC+TGG | - | chr6_4:20000247-20000266 | Msa0981090:intron | 45.0% | |
| ! | TGTCATAGGTTCTGGCTGTT+CGG | - | chr6_4:20000255-20000274 | Msa0981090:intron | 45.0% |
| ACAACAACAAAACTGCTGCC+TGG | + | chr6_4:20000299-20000318 | None:intergenic | 45.0% | |
| CATTGTCTGTGTTCCTTGTG+TGG | - | chr6_4:20000331-20000350 | Msa0981090:intron | 45.0% | |
| !!! | AGGGGGGTTTTTTAGTGAGT+TGG | - | chr6_4:20000506-20000525 | Msa0981090:intron | 45.0% |
| CTTGACACAACTGCTGATGA+TGG | + | chr6_4:20000883-20000902 | None:intergenic | 45.0% | |
| CCGTGTAGAAGAACAATTGG+AGG | + | chr6_4:20000927-20000946 | None:intergenic | 45.0% | |
| GAGATACGGATATCCATTGC+TGG | - | chr6_4:20001056-20001075 | Msa0981090:intron | 45.0% | |
| TATCCATTGCTGGAAGAGTC+TGG | - | chr6_4:20001066-20001085 | Msa0981090:intron | 45.0% | |
| AAACCAGACTCTTCCAGCAA+TGG | + | chr6_4:20001072-20001091 | None:intergenic | 45.0% | |
| ACTTGGGCTATCGACATACT+TGG | - | chr6_4:20001096-20001115 | Msa0981090:intron | 45.0% | |
| GGCTATCGACATACTTGGTT+GGG | - | chr6_4:20001101-20001120 | Msa0981090:intron | 45.0% | |
| GCTATCGACATACTTGGTTG+GGG | - | chr6_4:20001102-20001121 | Msa0981090:intron | 45.0% | |
| GGTTGGGGTTTCTCTGATTT+AGG | - | chr6_4:20001117-20001136 | Msa0981090:intron | 45.0% | |
| CCTTACAGAGAAAGGGGTAA+AGG | + | chr6_4:20001176-20001195 | None:intergenic | 45.0% | |
| CCTTTACCCCTTTCTCTGTA+AGG | - | chr6_4:20001173-20001192 | Msa0981090:intron | 45.0% | |
| GTCATTGTCACTGTTGTGTC+GGG | + | chr6_4:20001378-20001397 | None:intergenic | 45.0% | |
| GGAGATATTTACCCCAGCAT+AGG | + | chr6_4:20001554-20001573 | None:intergenic | 45.0% | |
| TGCTTACACTGTTTGGCATC+AGG | - | chr6_4:20001625-20001644 | Msa0981090:intron | 45.0% | |
| GCGTAAGGACATGTTAGTGA+AGG | + | chr6_4:20001699-20001718 | None:intergenic | 45.0% | |
| AACTCACATTAGTCCCGTCA+AGG | + | chr6_4:20001727-20001746 | None:intergenic | 45.0% | |
| GCTTGCATTGCTTATTGCCA+TGG | - | chr6_4:20001940-20001959 | Msa0981090:intron | 45.0% | |
| TGCATTGCTTATTGCCATGG+TGG | - | chr6_4:20001943-20001962 | Msa0981090:intron | 45.0% | |
| GCATTGCTTATTGCCATGGT+GGG | - | chr6_4:20001944-20001963 | Msa0981090:intron | 45.0% | |
| !!! | TGTTTTTGGGGTGGATGAGT+TGG | - | chr6_4:20000029-20000048 | Msa0981090:intron | 45.0% |
| !! | TCGAATCCTCGCTTTTGTCT+TGG | - | chr6_4:20000132-20000151 | Msa0981090:CDS | 45.0% |
| !! | CGAATCCTCGCTTTTGTCTT+GGG | - | chr6_4:20000133-20000152 | Msa0981090:CDS | 45.0% |
| !! | GAATCCTCGCTTTTGTCTTG+GGG | - | chr6_4:20000134-20000153 | Msa0981090:CDS | 45.0% |
| !! | AATCCTCGCTTTTGTCTTGG+GGG | - | chr6_4:20000135-20000154 | Msa0981090:CDS | 45.0% |
| !!! | TTTTGTGTGTTGTTTGGGGG+TGG | - | chr6_4:20000184-20000203 | Msa0981090:CDS | 45.0% |
| AGTGGAGTTTGTGCTGTCAT+AGG | - | chr6_4:20000241-20000260 | Msa0981090:intron | 45.0% | |
| GTTTGTGCTGTCATAGGTTC+TGG | - | chr6_4:20000247-20000266 | Msa0981090:intron | 45.0% | |
| ! | TGTCATAGGTTCTGGCTGTT+CGG | - | chr6_4:20000255-20000274 | Msa0981090:intron | 45.0% |
| ACAACAACAAAACTGCTGCC+TGG | + | chr6_4:20000299-20000318 | None:intergenic | 45.0% | |
| CATTGTCTGTGTTCCTTGTG+TGG | - | chr6_4:20000331-20000350 | Msa0981090:intron | 45.0% | |
| !!! | AGGGGGGTTTTTTAGTGAGT+TGG | - | chr6_4:20000506-20000525 | Msa0981090:intron | 45.0% |
| CTTGACACAACTGCTGATGA+TGG | + | chr6_4:20000883-20000902 | None:intergenic | 45.0% | |
| CCGTGTAGAAGAACAATTGG+AGG | + | chr6_4:20000927-20000946 | None:intergenic | 45.0% | |
| GAGATACGGATATCCATTGC+TGG | - | chr6_4:20001056-20001075 | Msa0981090:intron | 45.0% | |
| TATCCATTGCTGGAAGAGTC+TGG | - | chr6_4:20001066-20001085 | Msa0981090:intron | 45.0% | |
| AAACCAGACTCTTCCAGCAA+TGG | + | chr6_4:20001072-20001091 | None:intergenic | 45.0% | |
| ACTTGGGCTATCGACATACT+TGG | - | chr6_4:20001096-20001115 | Msa0981090:intron | 45.0% | |
| GGCTATCGACATACTTGGTT+GGG | - | chr6_4:20001101-20001120 | Msa0981090:intron | 45.0% | |
| GCTATCGACATACTTGGTTG+GGG | - | chr6_4:20001102-20001121 | Msa0981090:intron | 45.0% | |
| GGTTGGGGTTTCTCTGATTT+AGG | - | chr6_4:20001117-20001136 | Msa0981090:intron | 45.0% | |
| CCTTACAGAGAAAGGGGTAA+AGG | + | chr6_4:20001176-20001195 | None:intergenic | 45.0% | |
| CCTTTACCCCTTTCTCTGTA+AGG | - | chr6_4:20001173-20001192 | Msa0981090:intron | 45.0% | |
| GTCATTGTCACTGTTGTGTC+GGG | + | chr6_4:20001378-20001397 | None:intergenic | 45.0% | |
| GGAGATATTTACCCCAGCAT+AGG | + | chr6_4:20001554-20001573 | None:intergenic | 45.0% | |
| TGCTTACACTGTTTGGCATC+AGG | - | chr6_4:20001625-20001644 | Msa0981090:intron | 45.0% | |
| GCGTAAGGACATGTTAGTGA+AGG | + | chr6_4:20001699-20001718 | None:intergenic | 45.0% | |
| AACTCACATTAGTCCCGTCA+AGG | + | chr6_4:20001727-20001746 | None:intergenic | 45.0% | |
| GCTTGCATTGCTTATTGCCA+TGG | - | chr6_4:20001940-20001959 | Msa0981090:intron | 45.0% | |
| TGCATTGCTTATTGCCATGG+TGG | - | chr6_4:20001943-20001962 | Msa0981090:intron | 45.0% | |
| GCATTGCTTATTGCCATGGT+GGG | - | chr6_4:20001944-20001963 | Msa0981090:intron | 45.0% | |
| !!! | AATATTTTATGTTAATTTTA+TGG | - | chr6_4:20002037-20002056 | Msa0981090:intron | 5.0% |
| !!! | AATATTTTATGTTAATTTTA+TGG | - | chr6_4:20002037-20002056 | Msa0981090:intron | 5.0% |
| !!! | TTTTGGGGTGGATGAGTTGG+TGG | - | chr6_4:20000032-20000051 | Msa0981090:intron | 50.0% |
| CAGCACAAACTCCACTGAAC+CGG | + | chr6_4:20000237-20000256 | None:intergenic | 50.0% | |
| ! | ATAGGTTCTGGCTGTTCGGT+GGG | - | chr6_4:20000259-20000278 | Msa0981090:intron | 50.0% |
| TCTGTGTTCCTTGTGTGGGA+AGG | - | chr6_4:20000336-20000355 | Msa0981090:intron | 50.0% | |
| CTGTGTTCCTTGTGTGGGAA+GGG | - | chr6_4:20000337-20000356 | Msa0981090:intron | 50.0% | |
| TGTGTTCCTTGTGTGGGAAG+GGG | - | chr6_4:20000338-20000357 | Msa0981090:intron | 50.0% | |
| ! | TTTAGTGGGTCTGTTTGCGG+TGG | - | chr6_4:20000387-20000406 | Msa0981090:intron | 50.0% |
| ! | TTGTGCTGGTGGTTCTCTGT+GGG | - | chr6_4:20000451-20000470 | Msa0981090:intron | 50.0% |
| !! | TGAGTTGGTTCTTGGTGGAG+AGG | - | chr6_4:20000521-20000540 | Msa0981090:intron | 50.0% |
| GGGCTATCGACATACTTGGT+TGG | - | chr6_4:20001100-20001119 | Msa0981090:intron | 50.0% | |
| !! | CTATGTAGCACCGACACATG+TGG | + | chr6_4:20001436-20001455 | None:intergenic | 50.0% |
| GAATTGGCTGTCTTCACCGA+TGG | - | chr6_4:20001509-20001528 | Msa0981090:intron | 50.0% | |
| TCTAGATCGGTAGCCTATGC+TGG | - | chr6_4:20001538-20001557 | Msa0981090:intron | 50.0% | |
| CTAGATCGGTAGCCTATGCT+GGG | - | chr6_4:20001539-20001558 | Msa0981090:intron | 50.0% | |
| TAGATCGGTAGCCTATGCTG+GGG | - | chr6_4:20001540-20001559 | Msa0981090:intron | 50.0% | |
| TCCTTACGCACCATCCTTGA+CGG | - | chr6_4:20001710-20001729 | Msa0981090:intron | 50.0% | |
| CACATTAGTCCCGTCAAGGA+TGG | + | chr6_4:20001723-20001742 | None:intergenic | 50.0% | |
| ACAGTAGCATCATCCCACCA+TGG | + | chr6_4:20001960-20001979 | None:intergenic | 50.0% | |
| !!! | TTTTGGGGTGGATGAGTTGG+TGG | - | chr6_4:20000032-20000051 | Msa0981090:intron | 50.0% |
| CAGCACAAACTCCACTGAAC+CGG | + | chr6_4:20000237-20000256 | None:intergenic | 50.0% | |
| ! | ATAGGTTCTGGCTGTTCGGT+GGG | - | chr6_4:20000259-20000278 | Msa0981090:intron | 50.0% |
| TCTGTGTTCCTTGTGTGGGA+AGG | - | chr6_4:20000336-20000355 | Msa0981090:intron | 50.0% | |
| CTGTGTTCCTTGTGTGGGAA+GGG | - | chr6_4:20000337-20000356 | Msa0981090:intron | 50.0% | |
| TGTGTTCCTTGTGTGGGAAG+GGG | - | chr6_4:20000338-20000357 | Msa0981090:intron | 50.0% | |
| ! | TTTAGTGGGTCTGTTTGCGG+TGG | - | chr6_4:20000387-20000406 | Msa0981090:intron | 50.0% |
| ! | TTGTGCTGGTGGTTCTCTGT+GGG | - | chr6_4:20000451-20000470 | Msa0981090:intron | 50.0% |
| !! | TGAGTTGGTTCTTGGTGGAG+AGG | - | chr6_4:20000521-20000540 | Msa0981090:intron | 50.0% |
| GGGCTATCGACATACTTGGT+TGG | - | chr6_4:20001100-20001119 | Msa0981090:intron | 50.0% | |
| !! | CTATGTAGCACCGACACATG+TGG | + | chr6_4:20001436-20001455 | None:intergenic | 50.0% |
| GAATTGGCTGTCTTCACCGA+TGG | - | chr6_4:20001509-20001528 | Msa0981090:intron | 50.0% | |
| TCTAGATCGGTAGCCTATGC+TGG | - | chr6_4:20001538-20001557 | Msa0981090:intron | 50.0% | |
| CTAGATCGGTAGCCTATGCT+GGG | - | chr6_4:20001539-20001558 | Msa0981090:intron | 50.0% | |
| TAGATCGGTAGCCTATGCTG+GGG | - | chr6_4:20001540-20001559 | Msa0981090:intron | 50.0% | |
| TCCTTACGCACCATCCTTGA+CGG | - | chr6_4:20001710-20001729 | Msa0981090:intron | 50.0% | |
| CACATTAGTCCCGTCAAGGA+TGG | + | chr6_4:20001723-20001742 | None:intergenic | 50.0% | |
| ACAGTAGCATCATCCCACCA+TGG | + | chr6_4:20001960-20001979 | None:intergenic | 50.0% | |
| CAACCCCCAAGACAAAAGCG+AGG | + | chr6_4:20000141-20000160 | None:intergenic | 55.0% | |
| ! | TGTTGTTTGGGGGTGGCAGT+TGG | - | chr6_4:20000191-20000210 | Msa0981090:intron | 55.0% |
| !! | CTTTGGTTCTGCCGGTTCAG+TGG | - | chr6_4:20000223-20000242 | Msa0981090:intron | 55.0% |
| ! | CATAGGTTCTGGCTGTTCGG+TGG | - | chr6_4:20000258-20000277 | Msa0981090:intron | 55.0% |
| GTGTTCCTTGTGTGGGAAGG+GGG | - | chr6_4:20000339-20000358 | Msa0981090:intron | 55.0% | |
| TGCGAGCCTGTATACTGTCC+TGG | - | chr6_4:20000423-20000442 | Msa0981090:intron | 55.0% | |
| ACCACGCCAGGACAGTATAC+AGG | + | chr6_4:20000432-20000451 | None:intergenic | 55.0% | |
| ! | GTTGTGCTGGTGGTTCTCTG+TGG | - | chr6_4:20000450-20000469 | Msa0981090:intron | 55.0% |
| !! | GAGAGGTGTTCCTTGCGTCA+AGG | - | chr6_4:20000538-20000557 | Msa0981090:intron | 55.0% |
| CAGCAGTTGTGTCAAGCCAC+TGG | - | chr6_4:20000887-20000906 | Msa0981090:intron | 55.0% | |
| CAAGCCACTGGTGCAGAACA+AGG | - | chr6_4:20000899-20000918 | Msa0981090:intron | 55.0% | |
| GGTTCCTTGTTCTGCACCAG+TGG | + | chr6_4:20000906-20000925 | None:intergenic | 55.0% | |
| CCTTACGCACCATCCTTGAC+GGG | - | chr6_4:20001711-20001730 | Msa0981090:intron | 55.0% | |
| CAAGCGGCCCACCTATAAAG+AGG | + | chr6_4:20001925-20001944 | None:intergenic | 55.0% | |
| CAACCCCCAAGACAAAAGCG+AGG | + | chr6_4:20000141-20000160 | None:intergenic | 55.0% | |
| ! | TGTTGTTTGGGGGTGGCAGT+TGG | - | chr6_4:20000191-20000210 | Msa0981090:intron | 55.0% |
| !! | CTTTGGTTCTGCCGGTTCAG+TGG | - | chr6_4:20000223-20000242 | Msa0981090:intron | 55.0% |
| ! | CATAGGTTCTGGCTGTTCGG+TGG | - | chr6_4:20000258-20000277 | Msa0981090:intron | 55.0% |
| GTGTTCCTTGTGTGGGAAGG+GGG | - | chr6_4:20000339-20000358 | Msa0981090:intron | 55.0% | |
| TGCGAGCCTGTATACTGTCC+TGG | - | chr6_4:20000423-20000442 | Msa0981090:intron | 55.0% | |
| ACCACGCCAGGACAGTATAC+AGG | + | chr6_4:20000432-20000451 | None:intergenic | 55.0% | |
| ! | GTTGTGCTGGTGGTTCTCTG+TGG | - | chr6_4:20000450-20000469 | Msa0981090:intron | 55.0% |
| !! | GAGAGGTGTTCCTTGCGTCA+AGG | - | chr6_4:20000538-20000557 | Msa0981090:intron | 55.0% |
| CAGCAGTTGTGTCAAGCCAC+TGG | - | chr6_4:20000887-20000906 | Msa0981090:intron | 55.0% | |
| CAAGCCACTGGTGCAGAACA+AGG | - | chr6_4:20000899-20000918 | Msa0981090:intron | 55.0% | |
| GGTTCCTTGTTCTGCACCAG+TGG | + | chr6_4:20000906-20000925 | None:intergenic | 55.0% | |
| CCTTACGCACCATCCTTGAC+GGG | - | chr6_4:20001711-20001730 | Msa0981090:intron | 55.0% | |
| CAAGCGGCCCACCTATAAAG+AGG | + | chr6_4:20001925-20001944 | None:intergenic | 55.0% | |
| TGTTTGGGGGTGGCAGTTGG+TGG | - | chr6_4:20000194-20000213 | Msa0981090:intron | 60.0% | |
| !! | GCAGTTGGTGGTAGGGGCTT+TGG | - | chr6_4:20000206-20000225 | Msa0981090:intron | 60.0% |
| !! | GGTAGGGGCTTTGGTTCTGC+CGG | - | chr6_4:20000215-20000234 | Msa0981090:intron | 60.0% |
| !! | TGGCTGTTCGGTGGGCTGTT+AGG | - | chr6_4:20000267-20000286 | Msa0981090:intron | 60.0% |
| ! | TGGGCTGTTAGGCGTTGTCC+AGG | - | chr6_4:20000278-20000297 | Msa0981090:intron | 60.0% |
| ATCTGCCCCCTTCCCACACA+AGG | + | chr6_4:20000347-20000366 | None:intergenic | 60.0% | |
| GGTCTGTTTGCGGTGGCACT+TGG | - | chr6_4:20000394-20000413 | Msa0981090:intron | 60.0% | |
| GCCTGTATACTGTCCTGGCG+TGG | - | chr6_4:20000428-20000447 | Msa0981090:intron | 60.0% | |
| ATGGAGAGGGCCTTGACGCA+AGG | + | chr6_4:20000551-20000570 | None:intergenic | 60.0% | |
| CCCGTCAAGGATGGTGCGTA+AGG | + | chr6_4:20001714-20001733 | None:intergenic | 60.0% | |
| TGTTTGGGGGTGGCAGTTGG+TGG | - | chr6_4:20000194-20000213 | Msa0981090:intron | 60.0% | |
| !! | GCAGTTGGTGGTAGGGGCTT+TGG | - | chr6_4:20000206-20000225 | Msa0981090:intron | 60.0% |
| !! | GGTAGGGGCTTTGGTTCTGC+CGG | - | chr6_4:20000215-20000234 | Msa0981090:intron | 60.0% |
| !! | TGGCTGTTCGGTGGGCTGTT+AGG | - | chr6_4:20000267-20000286 | Msa0981090:intron | 60.0% |
| ! | TGGGCTGTTAGGCGTTGTCC+AGG | - | chr6_4:20000278-20000297 | Msa0981090:intron | 60.0% |
| ATCTGCCCCCTTCCCACACA+AGG | + | chr6_4:20000347-20000366 | None:intergenic | 60.0% | |
| GGTCTGTTTGCGGTGGCACT+TGG | - | chr6_4:20000394-20000413 | Msa0981090:intron | 60.0% | |
| GCCTGTATACTGTCCTGGCG+TGG | - | chr6_4:20000428-20000447 | Msa0981090:intron | 60.0% | |
| ATGGAGAGGGCCTTGACGCA+AGG | + | chr6_4:20000551-20000570 | None:intergenic | 60.0% | |
| CCCGTCAAGGATGGTGCGTA+AGG | + | chr6_4:20001714-20001733 | None:intergenic | 60.0% | |
| !! | TGGGGGTGGCAGTTGGTGGT+AGG | - | chr6_4:20000198-20000217 | Msa0981090:intron | 65.0% |
| !! | GGGGGTGGCAGTTGGTGGTA+GGG | - | chr6_4:20000199-20000218 | Msa0981090:intron | 65.0% |
| !! | GGGGTGGCAGTTGGTGGTAG+GGG | - | chr6_4:20000200-20000219 | Msa0981090:intron | 65.0% |
| CTGTCCTGGCGTGGTTGTGC+TGG | - | chr6_4:20000437-20000456 | Msa0981090:intron | 65.0% | |
| TCCTGGCGTGGTTGTGCTGG+TGG | - | chr6_4:20000440-20000459 | Msa0981090:intron | 65.0% | |
| ACCACCAGCACAACCACGCC+AGG | + | chr6_4:20000444-20000463 | None:intergenic | 65.0% | |
| !! | TGGGGGTGGCAGTTGGTGGT+AGG | - | chr6_4:20000198-20000217 | Msa0981090:intron | 65.0% |
| !! | GGGGGTGGCAGTTGGTGGTA+GGG | - | chr6_4:20000199-20000218 | Msa0981090:intron | 65.0% |
| !! | GGGGTGGCAGTTGGTGGTAG+GGG | - | chr6_4:20000200-20000219 | Msa0981090:intron | 65.0% |
| CTGTCCTGGCGTGGTTGTGC+TGG | - | chr6_4:20000437-20000456 | Msa0981090:intron | 65.0% | |
| TCCTGGCGTGGTTGTGCTGG+TGG | - | chr6_4:20000440-20000459 | Msa0981090:intron | 65.0% | |
| ACCACCAGCACAACCACGCC+AGG | + | chr6_4:20000444-20000463 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 19999731 | 20002125 | 19999731 | ID=Msa0981090;Name=Msa0981090 |
| chr6_4 | mRNA | 19999731 | 20002125 | 19999731 | ID=Msa0981090-mRNA-1;Parent=Msa0981090;Name=Msa0981090-mRNA-1;_AED=0.16;_eAED=0.29;_QI=0|0.2|0.16|0.83|0.4|0.66|6|34|181 |
| chr6_4 | exon | 19999731 | 19999923 | 19999731 | ID=Msa0981090-mRNA-1:exon:6182;Parent=Msa0981090-mRNA-1 |
| chr6_4 | exon | 20000117 | 20000209 | 20000117 | ID=Msa0981090-mRNA-1:exon:6181;Parent=Msa0981090-mRNA-1 |
| chr6_4 | exon | 20000569 | 20000618 | 20000569 | ID=Msa0981090-mRNA-1:exon:6180;Parent=Msa0981090-mRNA-1 |
| chr6_4 | exon | 20000718 | 20000815 | 20000718 | ID=Msa0981090-mRNA-1:exon:6179;Parent=Msa0981090-mRNA-1 |
| chr6_4 | exon | 20000901 | 20000995 | 20000901 | ID=Msa0981090-mRNA-1:exon:6178;Parent=Msa0981090-mRNA-1 |
| chr6_4 | exon | 20002075 | 20002125 | 20002075 | ID=Msa0981090-mRNA-1:exon:6177;Parent=Msa0981090-mRNA-1 |
| chr6_4 | CDS | 20002075 | 20002125 | 20002075 | ID=Msa0981090-mRNA-1:cds;Parent=Msa0981090-mRNA-1 |
| chr6_4 | CDS | 20000901 | 20000995 | 20000901 | ID=Msa0981090-mRNA-1:cds;Parent=Msa0981090-mRNA-1 |
| chr6_4 | CDS | 20000718 | 20000815 | 20000718 | ID=Msa0981090-mRNA-1:cds;Parent=Msa0981090-mRNA-1 |
| chr6_4 | CDS | 20000569 | 20000618 | 20000569 | ID=Msa0981090-mRNA-1:cds;Parent=Msa0981090-mRNA-1 |
| chr6_4 | CDS | 20000117 | 20000209 | 20000117 | ID=Msa0981090-mRNA-1:cds;Parent=Msa0981090-mRNA-1 |
| chr6_4 | CDS | 19999765 | 19999923 | 19999765 | ID=Msa0981090-mRNA-1:cds;Parent=Msa0981090-mRNA-1 |
| chr6_4 | three_prime_UTR | 19999731 | 19999764 | 19999731 | ID=Msa0981090-mRNA-1:three_prime_utr;Parent=Msa0981090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
