AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0984150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0984150 MtrunA17_Chr3g0129551 98.319 357 6 0 1 357 1 357 0.0 726
Msa0984150 MtrunA17_Chr7g0255811 31.163 215 119 5 3 200 6 208 3.09e-23 100
Msa0984150 MtrunA17_Chr6g0466661 52.000 75 34 2 52 126 7 79 4.14e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0984150 AT5G09850.1 53.804 368 144 10 1 357 1 353 1.43e-116 342
Msa0984150 AT5G09850.4 53.804 368 144 10 1 357 1 353 1.43e-116 342
Msa0984150 AT5G09850.2 53.804 368 144 10 1 357 1 353 1.43e-116 342
Msa0984150 AT5G09850.5 53.804 368 144 10 1 357 1 353 1.43e-116 342
Msa0984150 AT5G09850.3 51.632 337 140 8 1 326 1 325 3.19e-99 297
Msa0984150 AT5G05140.1 25.728 412 220 13 3 334 7 412 4.82e-21 94.4
Msa0984150 AT3G10820.1 29.500 200 117 6 1 199 8 184 4.35e-15 76.3
Msa0984150 AT3G10820.2 28.000 200 120 4 1 199 8 184 1.41e-14 75.5

Find 145 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGCAATTAATGATATTT+TGG 0.046261 6_4:+27969475 Msa0984150:three_prime_UTR
ATTGAAATGATACAGTTTAT+TGG 0.184961 6_4:-27966743 None:intergenic
ACATTTGACCATTTACTAAA+TGG 0.187957 6_4:+27969429 Msa0984150:three_prime_UTR
CGAGGAACTGATTTAGGTTT+TGG 0.207613 6_4:-27968495 None:intergenic
CTTCAGTGATTATTTAATTT+AGG 0.225099 6_4:-27969156 None:intergenic
GCAGAGGTAGGGGCAGTAAC+TGG 0.242308 6_4:-27968552 None:intergenic
TTTATTAAAGAATATGAAAA+TGG 0.245706 6_4:+27969316 Msa0984150:three_prime_UTR
GACTGTTCTCTTTCTTGATT+TGG 0.252210 6_4:-27967332 None:intergenic
CGCAACGAATTTCGATGAAT+TGG 0.261510 6_4:-27967079 None:intergenic
CTATTCTCACTGTGTGGATT+TGG 0.266353 6_4:-27968344 None:intergenic
GTAGATCTGAGAAGGAATTT+AGG 0.268466 6_4:-27966787 None:intergenic
CCCGCCATCCATTTAGTAAA+TGG 0.274011 6_4:-27969437 None:intergenic
CCTGATGATTATGCCCATTT+GGG 0.274665 6_4:-27968217 None:intergenic
GTTGACCTCCGTCGCAATTC+TGG 0.284508 6_4:-27967290 None:intergenic
GAGAGTAATGAGAATTAAAA+AGG 0.284671 6_4:-27966819 None:intergenic
CTCAACAAACCAACAAAATA+AGG 0.293833 6_4:-27969230 None:intergenic
TCTTTGCGAGGAACTGATTT+AGG 0.295138 6_4:-27968501 None:intergenic
ACCTGATGATTATGCCCATT+TGG 0.307811 6_4:-27968218 None:intergenic
ACACGGCGGGCGTTGACGTC+TGG 0.362780 6_4:+27967148 Msa0984150:CDS
TCAGTCTGAAGATACTTTGA+TGG 0.368003 6_4:+27967638 Msa0984150:intron
CCGCGGCGCGGTTGTCGTTC+CGG 0.369159 6_4:-27967366 None:intergenic
GATGGAGTTGCTACAAAATC+TGG 0.369937 6_4:+27967656 Msa0984150:CDS
ATGAGAATTGTTTAATTTGA+AGG 0.390079 6_4:-27966607 None:intergenic
ACCCACAAACACAAGTTGTT+TGG 0.397818 6_4:-27964836 None:intergenic
GGAAAGAAATTGTTGATGAT+TGG 0.408203 6_4:+27968007 Msa0984150:CDS
TTGCAGAAAACCACCCCAAA+TGG 0.410008 6_4:+27968203 Msa0984150:CDS
GTTCAGCTTCGGAGGTGTTA+CGG 0.414057 6_4:-27968467 None:intergenic
CTCAAACGTGTTCATCCCTC+TGG 0.420220 6_4:+27969085 Msa0984150:three_prime_UTR
CAGAGGTAGGGGCAGTAACT+GGG 0.423174 6_4:-27968551 None:intergenic
AGAGACTCGTGCAAGACAAC+TGG 0.423960 6_4:-27969535 None:intergenic
AATCAATCACCTTCAACTCT+TGG 0.433018 6_4:-27967698 None:intergenic
AATCGACGAACATTGCTTGA+TGG 0.437135 6_4:-27967868 None:intergenic
TTTGGAGAGTACGCAAAATC+AGG 0.441104 6_4:-27968326 None:intergenic
TATTACATTCCAAGAGTTGA+AGG 0.441822 6_4:+27967689 Msa0984150:CDS
AACTACAAAGAGGCTGATAA+TGG 0.443091 6_4:+27968774 Msa0984150:CDS
AGTTCAGATCTGAAGGTAAA+CGG 0.443251 6_4:-27966865 None:intergenic
CGCGATCTCCGTCGCTGCGC+AGG 0.445659 6_4:+27967185 Msa0984150:CDS
TCAACAAAGTTATCATCAAA+TGG 0.454628 6_4:-27969607 None:intergenic
GAAAGAAATTGTTGATGATT+GGG 0.457864 6_4:+27968008 Msa0984150:CDS
GCTGACACAGATGGGAGCTC+TGG 0.459360 6_4:+27968438 Msa0984150:intron
CTTGTGTTTGTGGGTGGAGC+TGG 0.463665 6_4:+27964844 Msa0984150:five_prime_UTR
CCGTCGCAATTCTGGCAAAT+CGG 0.468609 6_4:-27967282 None:intergenic
GACAGTAGACAAGGTCTTTG+CGG 0.471770 6_4:-27969513 None:intergenic
GCTTCTAGAAGATCCTCATC+AGG 0.474811 6_4:+27967509 Msa0984150:CDS
GTTCTCAAGGAAGGCAGCAC+TGG 0.479451 6_4:+27968981 Msa0984150:CDS
CCCAAATGGGCATAATCATC+AGG 0.480623 6_4:+27968217 Msa0984150:CDS
ACCAAACAACTTGTGTTTGT+GGG 0.481471 6_4:+27964835 Msa0984150:five_prime_UTR
TGAGAATTGTTTAATTTGAA+GGG 0.481613 6_4:-27966606 None:intergenic
AAACAAGATAGGGATGGAAT+GGG 0.497036 6_4:+27969275 Msa0984150:three_prime_UTR
ATTCAACATTTGCAGCTGAT+GGG 0.497352 6_4:+27968171 Msa0984150:intron
TTGACCATTTACTAAATGGA+TGG 0.498120 6_4:+27969433 Msa0984150:three_prime_UTR
TTTCCTTCAGACTGCGGCGT+CGG 0.501959 6_4:-27967405 None:intergenic
CACCAAACAACTTGTGTTTG+TGG 0.502814 6_4:+27964834 Msa0984150:five_prime_UTR
ATTGTTTAGTTCAGATCTGA+AGG 0.504505 6_4:-27966872 None:intergenic
ATCAAGCAATGTTCGTCGAT+TGG 0.507263 6_4:+27967870 Msa0984150:CDS
AAGAGGGAAAAGCACTCTCA+TGG 0.508075 6_4:+27968047 Msa0984150:CDS
ATCTGAGAAGGAATTTAGGT+TGG 0.509149 6_4:-27966783 None:intergenic
GAAACAAGATAGGGATGGAA+TGG 0.512199 6_4:+27969274 Msa0984150:three_prime_UTR
CCATTTACTAAATGGATGGC+GGG 0.514037 6_4:+27969437 Msa0984150:three_prime_UTR
TAAGAATTGTAGATCTGAGA+AGG 0.518399 6_4:-27966795 None:intergenic
TGCAGAAAACCACCCCAAAT+GGG 0.518736 6_4:+27968204 Msa0984150:CDS
ATTCTTCCTTCATTCACCAC+CGG 0.521919 6_4:+27964874 Msa0984150:five_prime_UTR
CCTTCAGACTGCGGCGTCGG+AGG 0.522259 6_4:-27967402 None:intergenic
GGCTTGCTGCTGCAAGAAAA+CGG 0.522716 6_4:+27968742 Msa0984150:CDS
TGTCGTTCCGGACTCAGACT+AGG 0.527954 6_4:-27967354 None:intergenic
CCTAAGTCAAAAGCAAAGAA+TGG 0.530585 6_4:+27968929 Msa0984150:CDS
ATAACGCCGGTGAGCTAAAG+AGG 0.531488 6_4:+27967208 Msa0984150:CDS
GCAAAGAACAATTCAGGTGA+TGG 0.534043 6_4:+27968892 Msa0984150:CDS
GAACAGTCCTAGTCTGAGTC+CGG 0.534784 6_4:+27967347 Msa0984150:CDS
CCTCCGACGCCGCAGTCTGA+AGG 0.534970 6_4:+27967402 Msa0984150:CDS
AAAGGTGGTGGCAGTTCTCA+AGG 0.538937 6_4:+27968968 Msa0984150:CDS
TGGTAGCCGGTGGTGAATGA+AGG 0.539530 6_4:-27964880 None:intergenic
TTTGTGTAGGAAACTGACAT+AGG 0.539813 6_4:+27967817 Msa0984150:intron
GATTGAAGAAATCAAAGAGA+TGG 0.540858 6_4:-27967035 None:intergenic
TTTGCAAAGCACAAAGGTGG+TGG 0.542006 6_4:+27968956 Msa0984150:CDS
CATTCTGAGGAGCAGAGGTA+GGG 0.542374 6_4:-27968563 None:intergenic
ATTCTGAGGAGCAGAGGTAG+GGG 0.547934 6_4:-27968562 None:intergenic
CAGAGGGATGAACACGTTTG+AGG 0.548855 6_4:-27969084 None:intergenic
TTGAGAAATTGCATGAACAA+TGG 0.560358 6_4:-27969017 None:intergenic
GGTCTTTGCGGCATCAAACT+CGG 0.561521 6_4:-27969501 None:intergenic
TTGTGTAGGAAACTGACATA+GGG 0.564467 6_4:+27967818 Msa0984150:intron
TTCAACATTTGCAGCTGATG+GGG 0.564794 6_4:+27968172 Msa0984150:intron
GGCGTTATCCTGCGCAGCGA+CGG 0.566982 6_4:-27967193 None:intergenic
GTGAAGCAGAATCCACAAAG+AGG 0.569929 6_4:+27968030 Msa0984150:CDS
TTTGGAGGTGGGTCTTTGCG+AGG 0.573343 6_4:-27968513 None:intergenic
ACCATTTACTAAATGGATGG+CGG 0.575317 6_4:+27969436 Msa0984150:three_prime_UTR
ATGATTATGCCCATTTGGGG+TGG 0.576734 6_4:-27968213 None:intergenic
AGAGGTAGGGGCAGTAACTG+GGG 0.576880 6_4:-27968550 None:intergenic
AGAGGGAAAAGCACTCTCAT+GGG 0.577480 6_4:+27968048 Msa0984150:CDS
GAGGAGAAGAGACGGAATCG+TGG 0.579304 6_4:+27967227 Msa0984150:CDS
ATTCAAAACCGTACATTCTG+AGG 0.580864 6_4:-27968576 None:intergenic
ACATTCTGAGGAGCAGAGGT+AGG 0.580912 6_4:-27968564 None:intergenic
AGCTTCGGAGGTGTTACGGT+CGG 0.581005 6_4:-27968463 None:intergenic
GAGCTAAAGAGGAGAAGAGA+CGG 0.582096 6_4:+27967219 Msa0984150:CDS
CGATCTATATTACACACGGC+GGG 0.584757 6_4:+27967135 Msa0984150:CDS
TTCAGGAAACAAGATAGGGA+TGG 0.587874 6_4:+27969269 Msa0984150:three_prime_UTR
GAACGACAACCGCGCCGCGG+CGG 0.588629 6_4:+27967369 Msa0984150:CDS
AACAAGATAGGGATGGAATG+GGG 0.589536 6_4:+27969276 Msa0984150:three_prime_UTR
GTAGAAATAGCTTGTGCTGT+GGG 0.591773 6_4:+27969042 Msa0984150:three_prime_UTR
TCTTCTCCTCTTTAGCTCAC+CGG 0.592478 6_4:-27967214 None:intergenic
TCATCAAACAAACCACCGTA+AGG 0.594373 6_4:-27967456 None:intergenic
TTGCACAAGTAGTATGCTAG+TGG 0.596440 6_4:-27966719 None:intergenic
GATGAGGAGATAGATCCTTA+CGG 0.597718 6_4:+27967441 Msa0984150:CDS
CCGCCGTGTGTAATATAGAT+CGG 0.605511 6_4:-27967134 None:intergenic
TAATTAAACAAAACCTGATG+AGG 0.606618 6_4:-27967522 None:intergenic
TACTTTGCAAAGCACAAAGG+TGG 0.607829 6_4:+27968953 Msa0984150:CDS
AAACGAAGACGGTGAAGATG+AGG 0.609578 6_4:+27967425 Msa0984150:CDS
GAAGAAGCTCCGCCGCGGCG+CGG 0.611025 6_4:-27967378 None:intergenic
CTGCGCAGCGACGGAGATCG+CGG 0.611264 6_4:-27967184 None:intergenic
CCGATTTGCCAGAATTGCGA+CGG 0.612546 6_4:+27967282 Msa0984150:CDS
TGAAGCAGAATCCACAAAGA+GGG 0.616018 6_4:+27968031 Msa0984150:CDS
CACCTGTGTACAGTGGTAGC+CGG 0.618760 6_4:-27964893 None:intergenic
CGGAAATCGTCCAAATCCAT+CGG 0.620451 6_4:-27967114 None:intergenic
GTGGTGGCAGTTCTCAAGGA+AGG 0.622677 6_4:+27968972 Msa0984150:CDS
CCGTACATTCTGAGGAGCAG+AGG 0.628754 6_4:-27968568 None:intergenic
GAGGTAGGGGCAGTAACTGG+GGG 0.631411 6_4:-27968549 None:intergenic
AGAAATAGCTTGTGCTGTGG+GGG 0.633030 6_4:+27969044 Msa0984150:three_prime_UTR
CTGATGATTATGCCCATTTG+GGG 0.635715 6_4:-27968216 None:intergenic
CAGTCTGAAGGAAACGAAGA+CGG 0.636870 6_4:+27967414 Msa0984150:CDS
TGCACAAGTAGTATGCTAGT+GGG 0.636892 6_4:-27966718 None:intergenic
ATTTGCCAGAATTGCGACGG+AGG 0.638773 6_4:+27967285 Msa0984150:CDS
GCGTCTCTACGCTGCCACCA+CGG 0.639790 6_4:+27967251 Msa0984150:CDS
TGTGGGCTAAGGGAGGTGAA+CGG 0.642256 6_4:-27964793 None:intergenic
GGTTACTTTGCAAAGCACAA+AGG 0.645193 6_4:+27968950 Msa0984150:CDS
AAGACCCACCTCCAAAACCA+AGG 0.647167 6_4:+27968520 Msa0984150:CDS
GGAGTTGCTACAAAATCTGG+TGG 0.648131 6_4:+27967659 Msa0984150:CDS
TGTAGGAAACTGACATAGGG+AGG 0.652621 6_4:+27967821 Msa0984150:intron
AGACAACTGGACAGTAGACA+AGG 0.654348 6_4:-27969522 None:intergenic
CCGGAACGACAACCGCGCCG+CGG 0.654440 6_4:+27967366 Msa0984150:CDS
GTCGCTGCGCAGGATAACGC+CGG 0.655654 6_4:+27967195 Msa0984150:CDS
AAACAACTTGTGTTTGTGGG+TGG 0.656542 6_4:+27964838 Msa0984150:five_prime_UTR
CACCGGCTACCACTGTACAC+AGG 0.660474 6_4:+27964891 Msa0984150:five_prime_UTR
TAGAAATAGCTTGTGCTGTG+GGG 0.665796 6_4:+27969043 Msa0984150:three_prime_UTR
GCTTCAAGCGAACTACAAAG+AGG 0.670278 6_4:+27968764 Msa0984150:CDS
TCTTCGTTTCCTTCAGACTG+CGG 0.687107 6_4:-27967411 None:intergenic
GAGGAGAAGAAGCTCCGCCG+CGG 0.688012 6_4:-27967383 None:intergenic
TTTCCGATCTATATTACACA+CGG 0.691280 6_4:+27967131 Msa0984150:CDS
TGTAGAAATAGCTTGTGCTG+TGG 0.695495 6_4:+27969041 Msa0984150:three_prime_UTR
TAAATGCCACCTGTGTACAG+TGG 0.704834 6_4:-27964900 None:intergenic
AATCGGAGTAACCTCCGTGG+TGG 0.706021 6_4:-27967265 None:intergenic
GAGGAGATAGATCCTTACGG+TGG 0.724438 6_4:+27967444 Msa0984150:CDS
CTGTGTACAGTGGTAGCCGG+TGG 0.725297 6_4:-27964890 None:intergenic
CCGATCTATATTACACACGG+CGG 0.755687 6_4:+27967134 Msa0984150:CDS
GCAAATCGGAGTAACCTCCG+TGG 0.764862 6_4:-27967268 None:intergenic
TCTCTACGCTGCCACCACGG+AGG 0.775314 6_4:+27967254 Msa0984150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTAATTAATTAAATTTA+TGG - chr6_4:27965932-27965951 None:intergenic 0.0%
!! AATAAAATAAAATAAAAATT+GGG - chr6_4:27966901-27966920 None:intergenic 0.0%
!! AAATAAAATAAAATAAAAAT+TGG - chr6_4:27966902-27966921 None:intergenic 0.0%
!!! TTTTTTTTTATTTTTTTTTT+TGG - chr6_4:27967003-27967022 None:intergenic 0.0%
!! TGAAATAAAATTATTTCAAT+CGG + chr6_4:27965971-27965990 Msa0984150:intron 10.0%
!!! TGATTTTTCATTTAAAATAA+GGG - chr6_4:27966320-27966339 None:intergenic 10.0%
!!! ATGATTTTTCATTTAAAATA+AGG - chr6_4:27966321-27966340 None:intergenic 10.0%
!! TGATATATATTAAATCTATT+TGG - chr6_4:27966499-27966518 None:intergenic 10.0%
!! ATAGATTTAATATATATCAA+TGG + chr6_4:27966500-27966519 Msa0984150:intron 10.0%
!! TTTATTAAAGAATATGAAAA+TGG + chr6_4:27969316-27969335 Msa0984150:three_prime_UTR 10.0%
!!! AAAACAGAACATATTTTAAT+TGG + chr6_4:27965008-27965027 Msa0984150:intron 15.0%
!!! GATGATTAAGTTTTAATTTA+GGG - chr6_4:27965262-27965281 None:intergenic 15.0%
!!! TGATGATTAAGTTTTAATTT+AGG - chr6_4:27965263-27965282 None:intergenic 15.0%
!! TTTCCTTCAAAAAAAAAAAA+AGG + chr6_4:27965517-27965536 Msa0984150:intron 15.0%
!!! TATCCTTTTTTTTTTTTTGA+AGG - chr6_4:27965523-27965542 None:intergenic 15.0%
!!! TAACCATTTCATTATTTTAA+AGG + chr6_4:27966021-27966040 Msa0984150:intron 15.0%
!!! AACCATTTCATTATTTTAAA+GGG + chr6_4:27966022-27966041 Msa0984150:intron 15.0%
!!! GATTTTTCATTTAAAATAAG+GGG - chr6_4:27966319-27966338 None:intergenic 15.0%
!! ATATATTAAATCTATTTGGA+CGG - chr6_4:27966495-27966514 None:intergenic 15.0%
!!! TATAAACATATTTTTTCTTG+TGG + chr6_4:27969123-27969142 Msa0984150:three_prime_UTR 15.0%
!!! GATTATTTCGTTTTTTTTTT+GGG - chr6_4:27969409-27969428 None:intergenic 15.0%
!!! TGATTATTTCGTTTTTTTTT+TGG - chr6_4:27969410-27969429 None:intergenic 15.0%
!!! TTTGCAATTAATGATATTTT+GGG + chr6_4:27969476-27969495 Msa0984150:three_prime_UTR 15.0%
!!! CTGTTTTTTTTTTAAACATC+AGG - chr6_4:27964995-27965014 None:intergenic 20.0%
!! TTTAATTGGTATTAATGAAC+AGG + chr6_4:27965022-27965041 Msa0984150:intron 20.0%
!!! TTTTTGTTTGTTTAAACATG+GGG - chr6_4:27965083-27965102 None:intergenic 20.0%
!!! CTTTTTGTTTGTTTAAACAT+GGG - chr6_4:27965084-27965103 None:intergenic 20.0%
!! TATTGAAATTCAGTTCAATA+TGG + chr6_4:27965484-27965503 Msa0984150:intron 20.0%
!! AATTTCGATTATCAATACTT+TGG - chr6_4:27965730-27965749 None:intergenic 20.0%
!! ATTATGGTTGATTGAAAAAA+TGG + chr6_4:27965814-27965833 Msa0984150:intron 20.0%
!! TTATGGTTGATTGAAAAAAT+GGG + chr6_4:27965815-27965834 Msa0984150:intron 20.0%
!! AATAAAATTATTTCAATCGG+TGG + chr6_4:27965974-27965993 Msa0984150:intron 20.0%
!!! ACCATTTCATTATTTTAAAG+GGG + chr6_4:27966023-27966042 Msa0984150:intron 20.0%
!! AAATCACATAATTAATTCCT+TGG + chr6_4:27966353-27966372 Msa0984150:intron 20.0%
!!! ATTTTATAGCTATTTTTGCT+GGG - chr6_4:27966393-27966412 None:intergenic 20.0%
!!! TATTTTATAGCTATTTTTGC+TGG - chr6_4:27966394-27966413 None:intergenic 20.0%
!! ATAGCTATAAAATAATGCTT+TGG + chr6_4:27966400-27966419 Msa0984150:intron 20.0%
!! ATTTAATATATATCAATGGC+TGG + chr6_4:27966504-27966523 Msa0984150:intron 20.0%
!!! TGAGAATTGTTTAATTTGAA+GGG - chr6_4:27966609-27966628 None:intergenic 20.0%
!!! ATGAGAATTGTTTAATTTGA+AGG - chr6_4:27966610-27966629 None:intergenic 20.0%
!! ATTGAAATGATACAGTTTAT+TGG - chr6_4:27966746-27966765 None:intergenic 20.0%
!!! CATTTGTTTTTTATTTGTGT+AGG + chr6_4:27967804-27967823 Msa0984150:intron 20.0%
!!! ATGGGTAATGTTAATATTTT+TGG + chr6_4:27968066-27968085 Msa0984150:intron 20.0%
!!! TGGGTAATGTTAATATTTTT+GGG + chr6_4:27968067-27968086 Msa0984150:intron 20.0%
!!! TTTTTGTTAAAGTTTGTTGT+TGG + chr6_4:27968601-27968620 Msa0984150:intron 20.0%
!! AAAAAATATGTTTATAGCGA+GGG - chr6_4:27969119-27969138 None:intergenic 20.0%
!!! CTTCAGTGATTATTTAATTT+AGG - chr6_4:27969159-27969178 None:intergenic 20.0%
!! TATCTTTCAGAAAAAGAAAA+AGG - chr6_4:27969356-27969375 None:intergenic 20.0%
!!! CTTTGCAATTAATGATATTT+TGG + chr6_4:27969475-27969494 Msa0984150:three_prime_UTR 20.0%
!!! GAAGATGTTTTTTGTTTTGT+GGG - chr6_4:27964813-27964832 None:intergenic 25.0%
! ATCAAAGTTAAATTTGTGCA+TGG - chr6_4:27964952-27964971 None:intergenic 25.0%
!! ATGCACAAATTTAACTTTGA+TGG + chr6_4:27964951-27964970 Msa0984150:intron 25.0%
!!! GCTTTTTGTTTGTTTAAACA+TGG - chr6_4:27965085-27965104 None:intergenic 25.0%
! AGAGAAGAATGAAAAATCAT+GGG - chr6_4:27965206-27965225 None:intergenic 25.0%
! AAGAGAAGAATGAAAAATCA+TGG - chr6_4:27965207-27965226 None:intergenic 25.0%
!!! GATTAAGTTTTAATTTAGGG+AGG - chr6_4:27965259-27965278 None:intergenic 25.0%
! TATGAAGACACTTTAAACTA+GGG - chr6_4:27965313-27965332 None:intergenic 25.0%
! AAATTTAATTATTTCACGCC+TGG + chr6_4:27965546-27965565 Msa0984150:intron 25.0%
! AATTTAATTATTTCACGCCT+GGG + chr6_4:27965547-27965566 Msa0984150:intron 25.0%
! AACAAGGTGTAATCAATATT+AGG - chr6_4:27965754-27965773 None:intergenic 25.0%
!! AAGTTGTTCATTTGAGATTA+TGG + chr6_4:27965798-27965817 Msa0984150:intron 25.0%
!!! TCCCCTTTAAAATAATGAAA+TGG - chr6_4:27966027-27966046 None:intergenic 25.0%
! CTATAAAATAATGCTTTGGT+GGG + chr6_4:27966404-27966423 Msa0984150:intron 25.0%
! TATAAAATAATGCTTTGGTG+GGG + chr6_4:27966405-27966424 Msa0984150:intron 25.0%
!! TAAACAGTTTTCTTTTCTTC+TGG + chr6_4:27966689-27966708 Msa0984150:five_prime_UTR 25.0%
! GAGAGTAATGAGAATTAAAA+AGG - chr6_4:27966822-27966841 None:intergenic 25.0%
! TAATTAAACAAAACCTGATG+AGG - chr6_4:27967525-27967544 None:intergenic 25.0%
!!! GTGAATTTTTGATTATGTGT+AGG + chr6_4:27967980-27967999 Msa0984150:intron 25.0%
!!! GAAAGAAATTGTTGATGATT+GGG + chr6_4:27968008-27968027 Msa0984150:CDS 25.0%
! TTGTCAAAGAGTTAAAAAGT+AGG + chr6_4:27968095-27968114 Msa0984150:intron 25.0%
! GTTAAAAAGTAGGAAGTTAA+AGG + chr6_4:27968105-27968124 Msa0984150:intron 25.0%
! ACTTCACAAAATTAACACTA+GGG - chr6_4:27968650-27968669 None:intergenic 25.0%
! AAAAAAGCAAAGAACAATTC+AGG + chr6_4:27968886-27968905 Msa0984150:CDS 25.0%
! GAAAAAATATGTTTATAGCG+AGG - chr6_4:27969120-27969139 None:intergenic 25.0%
!!! CTTATCAAACCTTATTTTGT+TGG + chr6_4:27969221-27969240 Msa0984150:three_prime_UTR 25.0%
! ACATTTGACCATTTACTAAA+TGG + chr6_4:27969429-27969448 Msa0984150:three_prime_UTR 25.0%
! TCAACAAAGTTATCATCAAA+TGG - chr6_4:27969610-27969629 None:intergenic 25.0%
! AATAAGAAGTGAGAAAAACA+AGG - chr6_4:27969636-27969655 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG + chr6_4:27969635-27969654 Msa0984150:three_prime_UTR 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + chr6_4:27969648-27969667 Msa0984150:three_prime_UTR 25.0%
!!! TTTTTTGTTTTGTGGGCTAA+GGG - chr6_4:27964806-27964825 None:intergenic 30.0%
!!! CGAAGATGTTTTTTGTTTTG+TGG - chr6_4:27964814-27964833 None:intergenic 30.0%
! AGAACATAAGTGATTTTCGA+TGG - chr6_4:27965107-27965126 None:intergenic 30.0%
AATAATAAGGTTGAAGAGAC+TGG - chr6_4:27965142-27965161 None:intergenic 30.0%
AAGGGATGAAGGAAATAATA+AGG - chr6_4:27965155-27965174 None:intergenic 30.0%
ATCATGGGAATGAGAAATAT+GGG - chr6_4:27965191-27965210 None:intergenic 30.0%
AATCATGGGAATGAGAAATA+TGG - chr6_4:27965192-27965211 None:intergenic 30.0%
AATTTAGGGAGGAGAAATAT+GGG - chr6_4:27965248-27965267 None:intergenic 30.0%
TAATTTAGGGAGGAGAAATA+TGG - chr6_4:27965249-27965268 None:intergenic 30.0%
CTATGAAGACACTTTAAACT+AGG - chr6_4:27965314-27965333 None:intergenic 30.0%
! AATTTTTATCAGTCCAGATC+TGG - chr6_4:27965345-27965364 None:intergenic 30.0%
TCTGGACTGATAAAAATTGT+TGG + chr6_4:27965347-27965366 Msa0984150:intron 30.0%
! TCTTCTTTTAGATGAGAGAT+AGG + chr6_4:27965376-27965395 Msa0984150:intron 30.0%
CTTCACAAATTCAAATGACA+AGG - chr6_4:27965410-27965429 None:intergenic 30.0%
TTGAAGGAGAAATGGAAATT+CGG + chr6_4:27965854-27965873 Msa0984150:intron 30.0%
GGAATGAGAAAGATGAAATT+GGG + chr6_4:27965882-27965901 Msa0984150:intron 30.0%
TTGCAATTTATCTGCATTCA+GGG - chr6_4:27966096-27966115 None:intergenic 30.0%
TTTGCAATTTATCTGCATTC+AGG - chr6_4:27966097-27966116 None:intergenic 30.0%
ACTAACAAAGTCTACATTCA+GGG - chr6_4:27966125-27966144 None:intergenic 30.0%
TTTGCATATTATCTGCATTC+AGG + chr6_4:27966245-27966264 Msa0984150:intron 30.0%
TTGCATATTATCTGCATTCA+GGG + chr6_4:27966246-27966265 Msa0984150:intron 30.0%
GCTATAAAATAATGCTTTGG+TGG + chr6_4:27966403-27966422 Msa0984150:intron 30.0%
TAAGAATTGTAGATCTGAGA+AGG - chr6_4:27966798-27966817 None:intergenic 30.0%
! ATTGTTTAGTTCAGATCTGA+AGG - chr6_4:27966875-27966894 None:intergenic 30.0%
GATTGAAGAAATCAAAGAGA+TGG - chr6_4:27967038-27967057 None:intergenic 30.0%
TTTCCGATCTATATTACACA+CGG + chr6_4:27967131-27967150 Msa0984150:CDS 30.0%
TATTACATTCCAAGAGTTGA+AGG + chr6_4:27967689-27967708 Msa0984150:CDS 30.0%
!!! AATGCTGTTTTTTGTAGCAT+TGG + chr6_4:27967949-27967968 Msa0984150:intron 30.0%
!! TTTTGATTATGTGTAGGAAG+TGG + chr6_4:27967986-27968005 Msa0984150:intron 30.0%
!! GGAAAGAAATTGTTGATGAT+TGG + chr6_4:27968007-27968026 Msa0984150:CDS 30.0%
ATTCGTGTGAAATTCGTTAA+TGG + chr6_4:27968137-27968156 Msa0984150:intron 30.0%
CAACAAGGTTAAAGGAATAT+TGG - chr6_4:27968379-27968398 None:intergenic 30.0%
ATCAACCAAATGCAAACAAA+AGG - chr6_4:27968405-27968424 None:intergenic 30.0%
!!! ACTGATTTAGGTTTTGGTTT+TGG - chr6_4:27968492-27968511 None:intergenic 30.0%
CTTCACAAAATTAACACTAG+GGG - chr6_4:27968649-27968668 None:intergenic 30.0%
CACTTCACAAAATTAACACT+AGG - chr6_4:27968651-27968670 None:intergenic 30.0%
TAAACAACACACGAAACTTT+AGG - chr6_4:27968862-27968881 None:intergenic 30.0%
TTGAGAAATTGCATGAACAA+TGG - chr6_4:27969020-27969039 None:intergenic 30.0%
CTCAACAAACCAACAAAATA+AGG - chr6_4:27969233-27969252 None:intergenic 30.0%
!!! CTTATTTTGTTGGTTTGTTG+AGG + chr6_4:27969231-27969250 Msa0984150:three_prime_UTR 30.0%
!! TTCTTTTCAGGAAACAAGAT+AGG + chr6_4:27969264-27969283 Msa0984150:three_prime_UTR 30.0%
!! TCTTTTCAGGAAACAAGATA+GGG + chr6_4:27969265-27969284 Msa0984150:three_prime_UTR 30.0%
TTGACCATTTACTAAATGGA+TGG + chr6_4:27969433-27969452 Msa0984150:three_prime_UTR 30.0%
!!! GTTTTTTGTTTTGTGGGCTA+AGG - chr6_4:27964807-27964826 None:intergenic 35.0%
ACCAAACAACTTGTGTTTGT+GGG + chr6_4:27964835-27964854 Msa0984150:five_prime_UTR 35.0%
CAAAGATTTGTGTAGTGTGT+AGG - chr6_4:27964927-27964946 None:intergenic 35.0%
ACATCAGGTAATAAACTGAC+AGG - chr6_4:27964980-27964999 None:intergenic 35.0%
GTTGAAGAGACTGGAAAAAT+TGG - chr6_4:27965133-27965152 None:intergenic 35.0%
ATTTAGGGAGGAGAAATATG+GGG - chr6_4:27965247-27965266 None:intergenic 35.0%
GACACTTTAAACTAGGGATA+TGG - chr6_4:27965307-27965326 None:intergenic 35.0%
!! CATAGTTTGTTATCCAGATC+TGG + chr6_4:27965329-27965348 Msa0984150:intron 35.0%
! TCGATGTTTTCTTCTGTGTT+GGG - chr6_4:27965600-27965619 None:intergenic 35.0%
CATAGTTCATTGTATCATCG+AGG + chr6_4:27965686-27965705 Msa0984150:intron 35.0%
! TACACCTTGTTTGTTTGAGA+AGG + chr6_4:27965763-27965782 Msa0984150:intron 35.0%
AAATGAACAACTTCTTCACC+AGG - chr6_4:27965791-27965810 None:intergenic 35.0%
TGGTTGATTGAAAAAATGGG+TGG + chr6_4:27965818-27965837 Msa0984150:intron 35.0%
GGTTGATTGAAAAAATGGGT+GGG + chr6_4:27965819-27965838 Msa0984150:intron 35.0%
AGAAATGGAAATTCGGAAAG+CGG + chr6_4:27965861-27965880 Msa0984150:intron 35.0%
CGGAATGAGAAAGATGAAAT+TGG + chr6_4:27965881-27965900 Msa0984150:intron 35.0%
! AAAGATGAAATTGGGTTGCT+GGG + chr6_4:27965890-27965909 Msa0984150:intron 35.0%
GACTAACAAAGTCTACATTC+AGG - chr6_4:27966126-27966145 None:intergenic 35.0%
TCAGGGACTAAATTGACTAA+CGG - chr6_4:27966140-27966159 None:intergenic 35.0%
ACTAACGAAGTCTACATTCA+GGG - chr6_4:27966189-27966208 None:intergenic 35.0%
GAATCCGTGTACAAAGTAAA+AGG + chr6_4:27966438-27966457 Msa0984150:intron 35.0%
! AGAGCCTTTTACTTTGTACA+CGG - chr6_4:27966445-27966464 None:intergenic 35.0%
ATCTGAGAAGGAATTTAGGT+TGG - chr6_4:27966786-27966805 None:intergenic 35.0%
GTAGATCTGAGAAGGAATTT+AGG - chr6_4:27966790-27966809 None:intergenic 35.0%
AGTTCAGATCTGAAGGTAAA+CGG - chr6_4:27966868-27966887 None:intergenic 35.0%
!! TTACGATTTTCCGATGGATT+TGG + chr6_4:27967104-27967123 Msa0984150:exon 35.0%
GACTGTTCTCTTTCTTGATT+TGG - chr6_4:27967335-27967354 None:intergenic 35.0%
TCAGTCTGAAGATACTTTGA+TGG + chr6_4:27967638-27967657 Msa0984150:intron 35.0%
AATCAATCACCTTCAACTCT+TGG - chr6_4:27967701-27967720 None:intergenic 35.0%
TTTGTGTAGGAAACTGACAT+AGG + chr6_4:27967817-27967836 Msa0984150:intron 35.0%
TTGTGTAGGAAACTGACATA+GGG + chr6_4:27967818-27967837 Msa0984150:intron 35.0%
AAGTAGGAAGTTAAAGGAGT+TGG + chr6_4:27968111-27968130 Msa0984150:intron 35.0%
TATTCAACATTTGCAGCTGA+TGG + chr6_4:27968170-27968189 Msa0984150:intron 35.0%
ATTCAACATTTGCAGCTGAT+GGG + chr6_4:27968171-27968190 Msa0984150:intron 35.0%
!! AAAGGCATCAACAAGGTTAA+AGG - chr6_4:27968387-27968406 None:intergenic 35.0%
!! TGATGCCTTTTGTTTGCATT+TGG + chr6_4:27968397-27968416 Msa0984150:intron 35.0%
!! TTTTTGTTTGCTGACACAGA+TGG + chr6_4:27968429-27968448 Msa0984150:intron 35.0%
!! TTTTGTTTGCTGACACAGAT+GGG + chr6_4:27968430-27968449 Msa0984150:intron 35.0%
!!! TTTTGGTTTTGGTTCAGCTT+CGG - chr6_4:27968481-27968500 None:intergenic 35.0%
ATTCAAAACCGTACATTCTG+AGG - chr6_4:27968579-27968598 None:intergenic 35.0%
AACTACAAAGAGGCTGATAA+TGG + chr6_4:27968774-27968793 Msa0984150:CDS 35.0%
!!! CCATTCTTTGCTTTTGACTT+AGG - chr6_4:27968932-27968951 None:intergenic 35.0%
CCTAAGTCAAAAGCAAAGAA+TGG + chr6_4:27968929-27968948 Msa0984150:CDS 35.0%
TTTCAAAAACGAACAAGCTG+AGG - chr6_4:27969194-27969213 None:intergenic 35.0%
!! TCAGCTTGTTCGTTTTTGAA+AGG + chr6_4:27969193-27969212 Msa0984150:three_prime_UTR 35.0%
!! CAGCTTGTTCGTTTTTGAAA+GGG + chr6_4:27969194-27969213 Msa0984150:three_prime_UTR 35.0%
!! AGCTTGTTCGTTTTTGAAAG+GGG + chr6_4:27969195-27969214 Msa0984150:three_prime_UTR 35.0%
AAACAAGATAGGGATGGAAT+GGG + chr6_4:27969275-27969294 Msa0984150:three_prime_UTR 35.0%
ACCATTTACTAAATGGATGG+CGG + chr6_4:27969436-27969455 Msa0984150:three_prime_UTR 35.0%
CACCAAACAACTTGTGTTTG+TGG + chr6_4:27964834-27964853 Msa0984150:five_prime_UTR 40.0%
ACCCACAAACACAAGTTGTT+TGG - chr6_4:27964839-27964858 None:intergenic 40.0%
AAACAACTTGTGTTTGTGGG+TGG + chr6_4:27964838-27964857 Msa0984150:five_prime_UTR 40.0%
ATTCTTCCTTCATTCACCAC+CGG + chr6_4:27964874-27964893 Msa0984150:five_prime_UTR 40.0%
TCAGGTAATAAACTGACAGG+TGG - chr6_4:27964977-27964996 None:intergenic 40.0%
! ATGGGGTGTCTTTCTTAACT+TGG - chr6_4:27965066-27965085 None:intergenic 40.0%
! GAAATATGGGTTGAGGTGAA+TGG - chr6_4:27965178-27965197 None:intergenic 40.0%
! GGAATGAGAAATATGGGTTG+AGG - chr6_4:27965185-27965204 None:intergenic 40.0%
TATCATAGAACAAGCAGCAC+TGG - chr6_4:27965466-27965485 None:intergenic 40.0%
! CGATGTTTTCTTCTGTGTTG+GGG - chr6_4:27965599-27965618 None:intergenic 40.0%
! GTCGATGTTTTCTTCTGTGT+TGG - chr6_4:27965601-27965620 None:intergenic 40.0%
!! GAAAAGCGTTGAAGGAGAAA+TGG + chr6_4:27965846-27965865 Msa0984150:intron 40.0%
! GAAAGATGAAATTGGGTTGC+TGG + chr6_4:27965889-27965908 Msa0984150:intron 40.0%
! TAGTCACTTTAGTCCCTGAA+TGG + chr6_4:27966049-27966068 Msa0984150:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+GGG + chr6_4:27966050-27966069 Msa0984150:intron 40.0%
GACTAACGAAGTCTACATTC+AGG - chr6_4:27966190-27966209 None:intergenic 40.0%
! AGTCACTTTAGTCCCTGAAT+GGG - chr6_4:27966050-27966069 None:intergenic 40.0%
! TAGTCACTTTAGTCCCTGAA+TGG - chr6_4:27966049-27966068 None:intergenic 40.0%
!!! CTATTTTTGCTGGGCTTTGT+GGG - chr6_4:27966384-27966403 None:intergenic 40.0%
CAAAGTAAAAGGCTCTTTGC+AGG + chr6_4:27966449-27966468 Msa0984150:intron 40.0%
TTAAATCTATTTGGACGGCC+AGG - chr6_4:27966490-27966509 None:intergenic 40.0%
! TTGAAGGGTGTATGTGTACA+GGG - chr6_4:27966594-27966613 None:intergenic 40.0%
! TTTGAAGGGTGTATGTGTAC+AGG - chr6_4:27966595-27966614 None:intergenic 40.0%
TGCACAAGTAGTATGCTAGT+GGG - chr6_4:27966721-27966740 None:intergenic 40.0%
TTGCACAAGTAGTATGCTAG+TGG - chr6_4:27966722-27966741 None:intergenic 40.0%
CGCAACGAATTTCGATGAAT+TGG - chr6_4:27967082-27967101 None:intergenic 40.0%
! TGCGATTTACGATTTTCCGA+TGG + chr6_4:27967098-27967117 Msa0984150:exon 40.0%
GATGAGGAGATAGATCCTTA+CGG + chr6_4:27967441-27967460 Msa0984150:CDS 40.0%
TCATCAAACAAACCACCGTA+AGG - chr6_4:27967459-27967478 None:intergenic 40.0%
GATGGAGTTGCTACAAAATC+TGG + chr6_4:27967656-27967675 Msa0984150:CDS 40.0%
AATCGACGAACATTGCTTGA+TGG - chr6_4:27967871-27967890 None:intergenic 40.0%
ATCAAGCAATGTTCGTCGAT+TGG + chr6_4:27967870-27967889 Msa0984150:CDS 40.0%
TGAAGCAGAATCCACAAAGA+GGG + chr6_4:27968031-27968050 Msa0984150:CDS 40.0%
TTCAACATTTGCAGCTGATG+GGG + chr6_4:27968172-27968191 Msa0984150:intron 40.0%
CTGATGATTATGCCCATTTG+GGG - chr6_4:27968219-27968238 None:intergenic 40.0%
CCTGATGATTATGCCCATTT+GGG - chr6_4:27968220-27968239 None:intergenic 40.0%
ACCTGATGATTATGCCCATT+TGG - chr6_4:27968221-27968240 None:intergenic 40.0%
! TTTGGAGAGTACGCAAAATC+AGG - chr6_4:27968329-27968348 None:intergenic 40.0%
CTATTCTCACTGTGTGGATT+TGG - chr6_4:27968347-27968366 None:intergenic 40.0%
!! GCAAACAAAAGGCATCAACA+AGG - chr6_4:27968394-27968413 None:intergenic 40.0%
!! CGAGGAACTGATTTAGGTTT+TGG - chr6_4:27968498-27968517 None:intergenic 40.0%
! TCTTTGCGAGGAACTGATTT+AGG - chr6_4:27968504-27968523 None:intergenic 40.0%
!! AGAGCAATTTTGATGCAGAG+AGG + chr6_4:27968721-27968740 Msa0984150:CDS 40.0%
GCAAAGAACAATTCAGGTGA+TGG + chr6_4:27968892-27968911 Msa0984150:CDS 40.0%
! GGTTACTTTGCAAAGCACAA+AGG + chr6_4:27968950-27968969 Msa0984150:CDS 40.0%
TACTTTGCAAAGCACAAAGG+TGG + chr6_4:27968953-27968972 Msa0984150:CDS 40.0%
! TGTAGAAATAGCTTGTGCTG+TGG + chr6_4:27969041-27969060 Msa0984150:three_prime_UTR 40.0%
! GTAGAAATAGCTTGTGCTGT+GGG + chr6_4:27969042-27969061 Msa0984150:three_prime_UTR 40.0%
! TAGAAATAGCTTGTGCTGTG+GGG + chr6_4:27969043-27969062 Msa0984150:three_prime_UTR 40.0%
TTCAGGAAACAAGATAGGGA+TGG + chr6_4:27969269-27969288 Msa0984150:three_prime_UTR 40.0%
GAAACAAGATAGGGATGGAA+TGG + chr6_4:27969274-27969293 Msa0984150:three_prime_UTR 40.0%
AACAAGATAGGGATGGAATG+GGG + chr6_4:27969276-27969295 Msa0984150:three_prime_UTR 40.0%
CCATTTACTAAATGGATGGC+GGG + chr6_4:27969437-27969456 Msa0984150:three_prime_UTR 40.0%
GGTGAACGGACAAAAACTCA+GGG - chr6_4:27964782-27964801 None:intergenic 45.0%
AGGTGAACGGACAAAAACTC+AGG - chr6_4:27964783-27964802 None:intergenic 45.0%
!!! TTTGTTTTGTGGGCTAAGGG+AGG - chr6_4:27964803-27964822 None:intergenic 45.0%
TAAATGCCACCTGTGTACAG+TGG - chr6_4:27964903-27964922 None:intergenic 45.0%
! GGGTGTCTTTCTTAACTTGG+TGG - chr6_4:27965063-27965082 None:intergenic 45.0%
! ATGGGTTGAGGTGAATGGAA+GGG - chr6_4:27965173-27965192 None:intergenic 45.0%
! TATGGGTTGAGGTGAATGGA+AGG - chr6_4:27965174-27965193 None:intergenic 45.0%
ATGGGGTTGAAGTGAAGTGA+AGG - chr6_4:27965230-27965249 None:intergenic 45.0%
TGGTAGACTCGTATATACCC+AGG - chr6_4:27965567-27965586 None:intergenic 45.0%
CTGTGTTGGGGAAGAAAAGT+TGG - chr6_4:27965587-27965606 None:intergenic 45.0%
GGAGCCTTCTCAAACAAACA+AGG - chr6_4:27965770-27965789 None:intergenic 45.0%
TGTTTGTTTGAGAAGGCTCC+TGG + chr6_4:27965770-27965789 Msa0984150:intron 45.0%
!! TGGGAAGAGAAAAGCGTTGA+AGG + chr6_4:27965838-27965857 Msa0984150:intron 45.0%
! GTCACTTTAGTCCCTGAATG+GGG + chr6_4:27966051-27966070 Msa0984150:intron 45.0%
ACTAACGGAGTCTGCATTCA+GGG - chr6_4:27966157-27966176 None:intergenic 45.0%
TCCCTGAAATTGACCATGCA+GGG + chr6_4:27966217-27966236 Msa0984150:intron 45.0%
TCCCTGCATGGTCAATTTCA+GGG - chr6_4:27966221-27966240 None:intergenic 45.0%
TATGCAAAACAGTCCCTGCA+TGG - chr6_4:27966233-27966252 None:intergenic 45.0%
! GTCACTTTAGTCCCTGAATG+GGG - chr6_4:27966051-27966070 None:intergenic 45.0%
!!! GCTATTTTTGCTGGGCTTTG+TGG - chr6_4:27966385-27966404 None:intergenic 45.0%
GCTTTGGTGGGGTAATGTAT+CGG + chr6_4:27966416-27966435 Msa0984150:intron 45.0%
CGGAAATCGTCCAAATCCAT+CGG - chr6_4:27967117-27967136 None:intergenic 45.0%
CCGCCGTGTGTAATATAGAT+CGG - chr6_4:27967137-27967156 None:intergenic 45.0%
CCGATCTATATTACACACGG+CGG + chr6_4:27967134-27967153 Msa0984150:CDS 45.0%
CGATCTATATTACACACGGC+GGG + chr6_4:27967135-27967154 Msa0984150:CDS 45.0%
! TCTTCTCCTCTTTAGCTCAC+CGG - chr6_4:27967217-27967236 None:intergenic 45.0%
GAGCTAAAGAGGAGAAGAGA+CGG + chr6_4:27967219-27967238 Msa0984150:CDS 45.0%
TCTTCGTTTCCTTCAGACTG+CGG - chr6_4:27967414-27967433 None:intergenic 45.0%
CAGTCTGAAGGAAACGAAGA+CGG + chr6_4:27967414-27967433 Msa0984150:CDS 45.0%
AAACGAAGACGGTGAAGATG+AGG + chr6_4:27967425-27967444 Msa0984150:CDS 45.0%
! GCTTCTAGAAGATCCTCATC+AGG + chr6_4:27967509-27967528 Msa0984150:CDS 45.0%
GGAGTTGCTACAAAATCTGG+TGG + chr6_4:27967659-27967678 Msa0984150:CDS 45.0%
TGTAGGAAACTGACATAGGG+AGG + chr6_4:27967821-27967840 Msa0984150:intron 45.0%
GTGAAGCAGAATCCACAAAG+AGG + chr6_4:27968030-27968049 Msa0984150:CDS 45.0%
!! AGAGTGCTTTTCCCTCTTTG+TGG - chr6_4:27968045-27968064 None:intergenic 45.0%
!! AAGAGGGAAAAGCACTCTCA+TGG + chr6_4:27968047-27968066 Msa0984150:CDS 45.0%
!! AGAGGGAAAAGCACTCTCAT+GGG + chr6_4:27968048-27968067 Msa0984150:CDS 45.0%
!! TTTGGGGTGGTTTTCTGCAA+AGG - chr6_4:27968203-27968222 None:intergenic 45.0%
TTGCAGAAAACCACCCCAAA+TGG + chr6_4:27968203-27968222 Msa0984150:CDS 45.0%
TGCAGAAAACCACCCCAAAT+GGG + chr6_4:27968204-27968223 Msa0984150:CDS 45.0%
ATGATTATGCCCATTTGGGG+TGG - chr6_4:27968216-27968235 None:intergenic 45.0%
CCCAAATGGGCATAATCATC+AGG + chr6_4:27968217-27968236 Msa0984150:CDS 45.0%
CAGATGCTATTCTCACTGTG+TGG - chr6_4:27968353-27968372 None:intergenic 45.0%
GCTTCAAGCGAACTACAAAG+AGG + chr6_4:27968764-27968783 Msa0984150:CDS 45.0%
TTTGCAAAGCACAAAGGTGG+TGG + chr6_4:27968956-27968975 Msa0984150:CDS 45.0%
! AGAAATAGCTTGTGCTGTGG+GGG + chr6_4:27969044-27969063 Msa0984150:three_prime_UTR 45.0%
GCGAGGGAAAAAAATCCAGA+GGG - chr6_4:27969103-27969122 None:intergenic 45.0%
AGCGAGGGAAAAAAATCCAG+AGG - chr6_4:27969104-27969123 None:intergenic 45.0%
! GGAGCACGTGATTTCTTTTC+AGG + chr6_4:27969252-27969271 Msa0984150:three_prime_UTR 45.0%
CCCGCCATCCATTTAGTAAA+TGG - chr6_4:27969440-27969459 None:intergenic 45.0%
GACAGTAGACAAGGTCTTTG+CGG - chr6_4:27969516-27969535 None:intergenic 45.0%
AGACAACTGGACAGTAGACA+AGG - chr6_4:27969525-27969544 None:intergenic 45.0%
GAGGTGAATGGAAGGGATGA+AGG - chr6_4:27965166-27965185 None:intergenic 50.0%
GACGAATCGTTCCCCATTCA+GGG - chr6_4:27966277-27966296 None:intergenic 50.0%
TGACGAATCGTTCCCCATTC+AGG - chr6_4:27966276-27966295 None:intergenic 50.0%
GACTAACGGAGTCTGCATTC+AGG - chr6_4:27966158-27966177 None:intergenic 50.0%
GTCCCTGAAATTGACCATGC+AGG + chr6_4:27966216-27966235 Msa0984150:intron 50.0%
GTCCCTGCATGGTCAATTTC+AGG - chr6_4:27966222-27966241 None:intergenic 50.0%
TGACGAATCGTTCCCCATTC+AGG + chr6_4:27966276-27966295 Msa0984150:intron 50.0%
GACGAATCGTTCCCCATTCA+GGG + chr6_4:27966277-27966296 Msa0984150:intron 50.0%
! TTTGCTGGGCTTTGTGGGTT+GGG - chr6_4:27966379-27966398 None:intergenic 50.0%
!! TTTTGCTGGGCTTTGTGGGT+TGG - chr6_4:27966380-27966399 None:intergenic 50.0%
AGGTTGCCAATCACACATCC+TGG + chr6_4:27966469-27966488 Msa0984150:intron 50.0%
! AAGGGTGTATGTGTACAGGG+TGG - chr6_4:27966591-27966610 None:intergenic 50.0%
ATAACGCCGGTGAGCTAAAG+AGG + chr6_4:27967208-27967227 Msa0984150:CDS 50.0%
CCGTCGCAATTCTGGCAAAT+CGG - chr6_4:27967285-27967304 None:intergenic 50.0%
! CCGATTTGCCAGAATTGCGA+CGG + chr6_4:27967282-27967301 Msa0984150:CDS 50.0%
ATTTGCCAGAATTGCGACGG+AGG + chr6_4:27967285-27967304 Msa0984150:CDS 50.0%
GAACAGTCCTAGTCTGAGTC+CGG + chr6_4:27967347-27967366 Msa0984150:CDS 50.0%
GAGGAGATAGATCCTTACGG+TGG + chr6_4:27967444-27967463 Msa0984150:CDS 50.0%
!! GTTCAGCTTCGGAGGTGTTA+CGG - chr6_4:27968470-27968489 None:intergenic 50.0%
!!! TGGTTTTGGTTCAGCTTCGG+AGG - chr6_4:27968478-27968497 None:intergenic 50.0%
AAGACCCACCTCCAAAACCA+AGG + chr6_4:27968520-27968539 Msa0984150:CDS 50.0%
!!! ATGGCCTTGGTTTTGGAGGT+GGG - chr6_4:27968527-27968546 None:intergenic 50.0%
! ATTCTGAGGAGCAGAGGTAG+GGG - chr6_4:27968565-27968584 None:intergenic 50.0%
! CATTCTGAGGAGCAGAGGTA+GGG - chr6_4:27968566-27968585 None:intergenic 50.0%
! ACATTCTGAGGAGCAGAGGT+AGG - chr6_4:27968567-27968586 None:intergenic 50.0%
CCTCTGCTCCTCAGAATGTA+CGG + chr6_4:27968568-27968587 Msa0984150:intron 50.0%
!! GGCTTGCTGCTGCAAGAAAA+CGG + chr6_4:27968742-27968761 Msa0984150:CDS 50.0%
! AAAGGTGGTGGCAGTTCTCA+AGG + chr6_4:27968968-27968987 Msa0984150:CDS 50.0%
CAGAGGGATGAACACGTTTG+AGG - chr6_4:27969087-27969106 None:intergenic 50.0%
CTCAAACGTGTTCATCCCTC+TGG + chr6_4:27969085-27969104 Msa0984150:three_prime_UTR 50.0%
GGTCTTTGCGGCATCAAACT+CGG - chr6_4:27969504-27969523 None:intergenic 50.0%
AGAGACTCGTGCAAGACAAC+TGG - chr6_4:27969538-27969557 None:intergenic 50.0%
! TGTGGGCTAAGGGAGGTGAA+CGG - chr6_4:27964796-27964815 None:intergenic 55.0%
CTTGTGTTTGTGGGTGGAGC+TGG + chr6_4:27964844-27964863 Msa0984150:five_prime_UTR 55.0%
TGGTAGCCGGTGGTGAATGA+AGG - chr6_4:27964883-27964902 None:intergenic 55.0%
CACCTGTGTACAGTGGTAGC+CGG - chr6_4:27964896-27964915 None:intergenic 55.0%
GAGGAGAAGAGACGGAATCG+TGG + chr6_4:27967227-27967246 Msa0984150:CDS 55.0%
AATCGGAGTAACCTCCGTGG+TGG - chr6_4:27967268-27967287 None:intergenic 55.0%
GCAAATCGGAGTAACCTCCG+TGG - chr6_4:27967271-27967290 None:intergenic 55.0%
GTTGACCTCCGTCGCAATTC+TGG - chr6_4:27967293-27967312 None:intergenic 55.0%
TGTCGTTCCGGACTCAGACT+AGG - chr6_4:27967357-27967376 None:intergenic 55.0%
TTTCCTTCAGACTGCGGCGT+CGG - chr6_4:27967408-27967427 None:intergenic 55.0%
!! AGCTTCGGAGGTGTTACGGT+CGG - chr6_4:27968466-27968485 None:intergenic 55.0%
TTTGGAGGTGGGTCTTTGCG+AGG - chr6_4:27968516-27968535 None:intergenic 55.0%
!!! GATGGCCTTGGTTTTGGAGG+TGG - chr6_4:27968528-27968547 None:intergenic 55.0%
!!! GGTGATGGCCTTGGTTTTGG+AGG - chr6_4:27968531-27968550 None:intergenic 55.0%
AGAGGTAGGGGCAGTAACTG+GGG - chr6_4:27968553-27968572 None:intergenic 55.0%
CAGAGGTAGGGGCAGTAACT+GGG - chr6_4:27968554-27968573 None:intergenic 55.0%
! CCGTACATTCTGAGGAGCAG+AGG - chr6_4:27968571-27968590 None:intergenic 55.0%
GTGGTGGCAGTTCTCAAGGA+AGG + chr6_4:27968972-27968991 Msa0984150:CDS 55.0%
GTTCTCAAGGAAGGCAGCAC+TGG + chr6_4:27968981-27969000 Msa0984150:CDS 55.0%
! TAGCTTGTGCTGTGGGGGAT+TGG + chr6_4:27969049-27969068 Msa0984150:three_prime_UTR 55.0%
AGCTTGTGCTGTGGGGGATT+GGG + chr6_4:27969050-27969069 Msa0984150:three_prime_UTR 55.0%
CTGTGTACAGTGGTAGCCGG+TGG - chr6_4:27964893-27964912 None:intergenic 60.0%
! CACCGGCTACCACTGTACAC+AGG + chr6_4:27964891-27964910 Msa0984150:five_prime_UTR 60.0%
CGGCTACCACTGTACACAGG+TGG + chr6_4:27964894-27964913 Msa0984150:intron 60.0%
GGACGGCCAGGATGTGTGAT+TGG - chr6_4:27966478-27966497 None:intergenic 60.0%
GCTGACACAGATGGGAGCTC+TGG + chr6_4:27968438-27968457 Msa0984150:intron 60.0%
!! GGGGGTGATGGCCTTGGTTT+TGG - chr6_4:27968534-27968553 None:intergenic 60.0%
! GTAACTGGGGGTGATGGCCT+TGG - chr6_4:27968540-27968559 None:intergenic 60.0%
GAGGTAGGGGCAGTAACTGG+GGG - chr6_4:27968552-27968571 None:intergenic 60.0%
GCAGAGGTAGGGGCAGTAAC+TGG - chr6_4:27968555-27968574 None:intergenic 60.0%
!! GGGCTTTGTGGGTTGGGCCA+AGG - chr6_4:27966373-27966392 None:intergenic 65.0%
GGCGTTATCCTGCGCAGCGA+CGG - chr6_4:27967196-27967215 None:intergenic 65.0%
GTCGCTGCGCAGGATAACGC+CGG + chr6_4:27967195-27967214 Msa0984150:CDS 65.0%
GCGTCTCTACGCTGCCACCA+CGG + chr6_4:27967251-27967270 Msa0984150:CDS 65.0%
TCTCTACGCTGCCACCACGG+AGG + chr6_4:27967254-27967273 Msa0984150:CDS 65.0%
GAGGAGAAGAAGCTCCGCCG+CGG - chr6_4:27967386-27967405 None:intergenic 65.0%
GGGGCAGTAACTGGGGGTGA+TGG - chr6_4:27968546-27968565 None:intergenic 65.0%
!! ACACGGCGGGCGTTGACGTC+TGG + chr6_4:27967148-27967167 Msa0984150:CDS 70.0%
CTGCGCAGCGACGGAGATCG+CGG - chr6_4:27967187-27967206 None:intergenic 70.0%
! CCTTCAGACTGCGGCGTCGG+AGG - chr6_4:27967405-27967424 None:intergenic 70.0%
CCTCCGACGCCGCAGTCTGA+AGG + chr6_4:27967402-27967421 Msa0984150:CDS 70.0%
CGCGATCTCCGTCGCTGCGC+AGG + chr6_4:27967185-27967204 Msa0984150:CDS 75.0%
CCGCGGCGCGGTTGTCGTTC+CGG - chr6_4:27967369-27967388 None:intergenic 75.0%
CCGGAACGACAACCGCGCCG+CGG + chr6_4:27967366-27967385 Msa0984150:CDS 75.0%
GAACGACAACCGCGCCGCGG+CGG + chr6_4:27967369-27967388 Msa0984150:CDS 75.0%
GAAGAAGCTCCGCCGCGGCG+CGG - chr6_4:27967381-27967400 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 27964767 27969674 27964767 ID=Msa0984150;Name=Msa0984150
chr6_4 mRNA 27964767 27969674 27964767 ID=Msa0984150-mRNA-1;Parent=Msa0984150;Name=Msa0984150-mRNA-1;_AED=0.10;_eAED=0.10;_QI=660|1|1|1|0.88|0.8|10|668|357
chr6_4 exon 27964767 27964912 27964767 ID=Msa0984150-mRNA-1:exon:7857;Parent=Msa0984150-mRNA-1
chr6_4 exon 27966603 27967530 27966603 ID=Msa0984150-mRNA-1:exon:7858;Parent=Msa0984150-mRNA-1
chr6_4 exon 27967642 27967710 27967642 ID=Msa0984150-mRNA-1:exon:7859;Parent=Msa0984150-mRNA-1
chr6_4 exon 27967826 27967908 27967826 ID=Msa0984150-mRNA-1:exon:7860;Parent=Msa0984150-mRNA-1
chr6_4 exon 27968002 27968069 27968002 ID=Msa0984150-mRNA-1:exon:7861;Parent=Msa0984150-mRNA-1
chr6_4 exon 27968186 27968238 27968186 ID=Msa0984150-mRNA-1:exon:7862;Parent=Msa0984150-mRNA-1
chr6_4 exon 27968323 27968356 27968323 ID=Msa0984150-mRNA-1:exon:7863;Parent=Msa0984150-mRNA-1
chr6_4 exon 27968448 27968584 27968448 ID=Msa0984150-mRNA-1:exon:7864;Parent=Msa0984150-mRNA-1
chr6_4 exon 27968702 27968795 27968702 ID=Msa0984150-mRNA-1:exon:7865;Parent=Msa0984150-mRNA-1
chr6_4 exon 27968885 27969674 27968885 ID=Msa0984150-mRNA-1:exon:7866;Parent=Msa0984150-mRNA-1
chr6_4 five_prime_UTR 27964767 27964912 27964767 ID=Msa0984150-mRNA-1:five_prime_utr;Parent=Msa0984150-mRNA-1
chr6_4 five_prime_UTR 27966603 27967116 27966603 ID=Msa0984150-mRNA-1:five_prime_utr;Parent=Msa0984150-mRNA-1
chr6_4 CDS 27967117 27967530 27967117 ID=Msa0984150-mRNA-1:cds;Parent=Msa0984150-mRNA-1
chr6_4 CDS 27967642 27967710 27967642 ID=Msa0984150-mRNA-1:cds;Parent=Msa0984150-mRNA-1
chr6_4 CDS 27967826 27967908 27967826 ID=Msa0984150-mRNA-1:cds;Parent=Msa0984150-mRNA-1
chr6_4 CDS 27968002 27968069 27968002 ID=Msa0984150-mRNA-1:cds;Parent=Msa0984150-mRNA-1
chr6_4 CDS 27968186 27968238 27968186 ID=Msa0984150-mRNA-1:cds;Parent=Msa0984150-mRNA-1
chr6_4 CDS 27968323 27968356 27968323 ID=Msa0984150-mRNA-1:cds;Parent=Msa0984150-mRNA-1
chr6_4 CDS 27968448 27968584 27968448 ID=Msa0984150-mRNA-1:cds;Parent=Msa0984150-mRNA-1
chr6_4 CDS 27968702 27968795 27968702 ID=Msa0984150-mRNA-1:cds;Parent=Msa0984150-mRNA-1
chr6_4 CDS 27968885 27969006 27968885 ID=Msa0984150-mRNA-1:cds;Parent=Msa0984150-mRNA-1
chr6_4 three_prime_UTR 27969007 27969674 27969007 ID=Msa0984150-mRNA-1:three_prime_utr;Parent=Msa0984150-mRNA-1
Gene Sequence

>Msa0984150

ATGGATTTGGACGATTTCCGATCTATATTACACACGGCGGGCGTTGACGTCTGGATGTTCATCGACACCGCGATCTCCGTCGCTGCGCAGGATAACGCCGGTGAGCTAAAGAGGAGAAGAGACGGAATCGTGGAGCGTCTCTACGCTGCCACCACGGAGGTTACTCCGATTTGCCAGAATTGCGACGGAGGTCAACGTCTTGTGACAAACGATAACCAAATCAAGAAAGAGAACAGTCCTAGTCTGAGTCCGGAACGACAACCGCGCCGCGGCGGAGCTTCTTCTCCTCCGACGCCGCAGTCTGAAGGAAACGAAGACGGTGAAGATGAGGAGATAGATCCTTACGGTGGTTTGTTTGATGATGAACAGAAGAAGATTCTAGAGATTAAAGAGCTTCTAGAAGATCCTCATCAGTCTGAAGATACTTTGATGGAGTTGCTACAAAATCTGGTGGATATTGATATTACATTCCAAGAGTTGAAGGAAACTGACATAGGGAGGAACGTGAATCAGTTGCGAAAACATCCATCAAGCAATGTTCGTCGATTGGTGAAGCTACTTGTCAAGAAGTGGAAAGAAATTGTTGATGATTGGGTGAAGCAGAATCCACAAAGAGGGAAAAGCACTCTCATGGCTGATGGGGACTCTCCTTTGCAGAAAACCACCCCAAATGGGCATAATCATCAGATTCCTGATTTTGCGTACTCTCCAAATCCACACAATGGGAGCTCTGGTTCCGACCGTAACACCTCCGAAGCTGAACCAAAACCAAAACCTAAATCAGTTCCTCGCAAAGACCCACCTCCAAAACCAAGGCCATCACCCCCAGTTACTGCCCCTACCTCTGCTCCTCAGAATAGACAGAGAGAACAGAAAGAGAGCAATTTTGATGCAGAGAGGCTTGCTGCTGCAAGAAAACGGCTTCAAGCGAACTACAAAGAGGCTGATAATGCAAAAAAGCAAAGAACAATTCAGGTGATGGACATACATGAGTTACCTAAGTCAAAAGCAAAGAATGGTTACTTTGCAAAGCACAAAGGTGGTGGCAGTTCTCAAGGAAGGCAGCACTGGTGA
Protein sequence

>Msa0984150

MDLDDFRSILHTAGVDVWMFIDTAISVAAQDNAGELKRRRDGIVERLYAATTEVTPICQNCDGGQRLVTNDNQIKKENSPSLSPERQPRRGGASSPPTPQSEGNEDGEDEEIDPYGGLFDDEQKKILEIKELLEDPHQSEDTLMELLQNLVDIDITFQELKETDIGRNVNQLRKHPSSNVRRLVKLLVKKWKEIVDDWVKQNPQRGKSTLMADGDSPLQKTTPNGHNHQIPDFAYSPNPHNGSSGSDRNTSEAEPKPKPKSVPRKDPPPKPRPSPPVTAPTSAPQNRQREQKESNFDAERLAAARKRLQANYKEADNAKKQRTIQVMDIHELPKSKAKNGYFAKHKGGGSSQGRQHW*