Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989130 | XP_003623723.1 | 78.035 | 173 | 16 | 2 | 53 | 207 | 1 | 169 | 1.54e-89 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989130 | sp|Q9LPC4|PPR1_ARATH | 57.317 | 82 | 35 | 0 | 126 | 207 | 72 | 153 | 1.26e-28 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989130 | G7L097 | 78.035 | 173 | 16 | 2 | 53 | 207 | 1 | 169 | 7.36e-90 | 280 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0652940 | Msa0989130 | 0.804263 | 2.349275e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989130 | MtrunA17_Chr7g0245891 | 78.035 | 173 | 16 | 2 | 53 | 207 | 1 | 169 | 1.42e-93 | 280 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989130 | AT1G01970.1 | 57.317 | 82 | 35 | 0 | 126 | 207 | 72 | 153 | 1.28e-29 | 114 |
Find 42 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAATCCTAATTTCATAAT+TGG | 0.173930 | 6_4:-44501343 | Msa0989130:CDS |
| ATACAATTTGGTTGTGTTAT+TGG | 0.200712 | 6_4:+44501267 | None:intergenic |
| TAGGATCCAATTATGAAATT+AGG | 0.215292 | 6_4:+44501337 | None:intergenic |
| TTTGAAAGAGTTGAAGAATA+TGG | 0.256609 | 6_4:-44500906 | Msa0989130:CDS |
| TGAATATCTTAGCAGATATT+AGG | 0.259563 | 6_4:-44501372 | Msa0989130:CDS |
| GTGCGACGAATCGGTGAGTT+TGG | 0.307806 | 6_4:+44502781 | None:intergenic |
| TTATTGGTTATTGAGTAATT+AGG | 0.316266 | 6_4:+44501283 | None:intergenic |
| CTTGCATCTATGAACGAATT+AGG | 0.332813 | 6_4:+44498447 | None:intergenic |
| GTTATGAATTTGATACAATT+TGG | 0.335780 | 6_4:+44501255 | None:intergenic |
| TAACTAATACTGAATCAAAA+TGG | 0.344862 | 6_4:+44501182 | None:intergenic |
| TACGAGAGCTGATTGGCTTT+CGG | 0.350381 | 6_4:-44500930 | Msa0989130:CDS |
| GCATACAAGGTTACTGCAAT+AGG | 0.385321 | 6_4:+44501318 | None:intergenic |
| TATGTGAATTAAGCTCCTTT+AGG | 0.396719 | 6_4:+44498484 | None:intergenic |
| ATCGTCGAGGAGATTCATTT+TGG | 0.397258 | 6_4:+44502814 | None:intergenic |
| AAAGGAGCTTAATTCACATA+TGG | 0.409514 | 6_4:-44498481 | Msa0989130:three_prime_UTR |
| TAGTGTCTGACTTCTATTCA+TGG | 0.423549 | 6_4:+44498519 | None:intergenic |
| CATCGCTTAACCATCTTCAA+TGG | 0.429961 | 6_4:+44501043 | None:intergenic |
| CAAGAGGATCATCTATTACT+AGG | 0.435049 | 6_4:-44498428 | Msa0989130:three_prime_UTR |
| TTCTCAATATAATGAAACTT+TGG | 0.445108 | 6_4:-44501407 | Msa0989130:CDS |
| GAGAGAAGAGTGCGACGAAT+CGG | 0.449644 | 6_4:+44502772 | None:intergenic |
| ATTTAGGTGGAATGAGATAC+GGG | 0.454367 | 6_4:-44501107 | Msa0989130:intron |
| TCATCTATTACTAGGAATGT+TGG | 0.469873 | 6_4:-44498420 | Msa0989130:three_prime_UTR |
| AGCTAAACTTCCATTGAAGA+TGG | 0.478166 | 6_4:-44501053 | Msa0989130:CDS |
| AATTTAGGTGGAATGAGATA+CGG | 0.487844 | 6_4:-44501108 | Msa0989130:intron |
| ATAAATACCTCAAGATAAAG+AGG | 0.490421 | 6_4:+44500878 | None:intergenic |
| TGAAGCCTACGAGAGCTGAT+TGG | 0.490712 | 6_4:-44500937 | Msa0989130:CDS |
| GAAGATGGTTAAGCGATGTA+AGG | 0.528066 | 6_4:-44501038 | Msa0989130:CDS |
| CTACCAACACAGCATCCTAA+AGG | 0.538814 | 6_4:-44498499 | Msa0989130:three_prime_UTR |
| TGTTAAATGACCATGAGAGT+TGG | 0.545496 | 6_4:-44498549 | Msa0989130:exon |
| GGATCATCCTCTTTATCTTG+AGG | 0.546828 | 6_4:-44500885 | Msa0989130:intron |
| GCTCCTTTAGGATGCTGTGT+TGG | 0.559971 | 6_4:+44498496 | None:intergenic |
| TCGTCGCACTCTTCTCTCAA+AGG | 0.586188 | 6_4:-44502767 | Msa0989130:intron |
| ATGACCATGAGAGTTGGAAT+CGG | 0.590751 | 6_4:-44498543 | Msa0989130:exon |
| CTTCACATGGCAATGAGCAA+CGG | 0.610973 | 6_4:-44502839 | None:intergenic |
| TGGACCGATTCCAACTCTCA+TGG | 0.622799 | 6_4:+44498539 | None:intergenic |
| TGAGATACGGGGTAATATCA+CGG | 0.622918 | 6_4:-44501095 | Msa0989130:CDS |
| AATTCGTTCATAGATGCAAG+AGG | 0.626738 | 6_4:-44498444 | Msa0989130:three_prime_UTR |
| TCATGAATATCAAGATAACT+CGG | 0.628346 | 6_4:+44501208 | None:intergenic |
| GATGGTTAAGCGATGTAAGG+CGG | 0.648992 | 6_4:-44501035 | Msa0989130:CDS |
| GAAAGCCAATCAGCTCTCGT+AGG | 0.660439 | 6_4:+44500932 | None:intergenic |
| TGGATGAGAAGAGATCGTCG+AGG | 0.744671 | 6_4:+44502801 | None:intergenic |
| TTTAGGTGGAATGAGATACG+GGG | 0.757230 | 6_4:-44501106 | Msa0989130:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTCAATTCATTTTTTTA+GGG | - | chr6_4:44498525-44498544 | Msa0989130:three_prime_UTR | 10.0% |
| !! | ATGTTATTATTAAAAAATAG+CGG | - | chr6_4:44499235-44499254 | Msa0989130:intron | 10.0% |
| !!! | ATTTAGGAATTTTTTTAATT+AGG | - | chr6_4:44499684-44499703 | Msa0989130:intron | 10.0% |
| !! | ATTACAAAATTGATTGAAAT+AGG | + | chr6_4:44498509-44498528 | None:intergenic | 15.0% |
| !!! | GTAATTCAATTCATTTTTTT+AGG | - | chr6_4:44498524-44498543 | Msa0989130:three_prime_UTR | 15.0% |
| !!! | TTTTTGTTTAGTGATTTTTT+AGG | - | chr6_4:44498692-44498711 | Msa0989130:intron | 15.0% |
| !!! | TTTAGTTTAATTGTAATTAG+TGG | - | chr6_4:44498937-44498956 | Msa0989130:intron | 15.0% |
| !! | ATGTCAATAGATAATTAATT+AGG | + | chr6_4:44499084-44499103 | None:intergenic | 15.0% |
| !!! | CTTTTAATTGCATTTATTAT+AGG | - | chr6_4:44500485-44500504 | Msa0989130:intron | 15.0% |
| !!! | TTTATTTTATCTTGTGTAAT+AGG | + | chr6_4:44500587-44500606 | None:intergenic | 15.0% |
| !! | AATACATTAACTCAAAAATT+AGG | + | chr6_4:44500841-44500860 | None:intergenic | 15.0% |
| !!! | TAATTTTTGAGTTAATGTAT+TGG | - | chr6_4:44500840-44500859 | Msa0989130:intron | 15.0% |
| !!! | TTCTTTTTATAAAGGTAAAT+TGG | + | chr6_4:44501330-44501349 | None:intergenic | 15.0% |
| !! | AATTTACCTTTATAAAAAGA+AGG | - | chr6_4:44501329-44501348 | Msa0989130:CDS | 15.0% |
| !!! | TTTGATTTATATACTTTCAT+AGG | - | chr6_4:44501484-44501503 | Msa0989130:intron | 15.0% |
| !! | CATAAAAGAAATAAATTCAT+TGG | - | chr6_4:44501593-44501612 | Msa0989130:intron | 15.0% |
| !! | TAAAAAAATGTAAAACAAAC+TGG | + | chr6_4:44502625-44502644 | None:intergenic | 15.0% |
| !!! | ATATTGTGAAGTTTAGTTTA+TGG | - | chr6_4:44498791-44498810 | Msa0989130:intron | 20.0% |
| !! | TGTTGAAACTAAAATTTAGT+TGG | - | chr6_4:44499426-44499445 | Msa0989130:intron | 20.0% |
| !! | TTCTCAATATAATGAAACTT+TGG | - | chr6_4:44499813-44499832 | Msa0989130:intron | 20.0% |
| !! | GTTAATCCTAATTTCATAAT+TGG | - | chr6_4:44499877-44499896 | Msa0989130:intron | 20.0% |
| !!! | TTATTGGTTATTGAGTAATT+AGG | + | chr6_4:44499940-44499959 | None:intergenic | 20.0% |
| !! | GTTATGAATTTGATACAATT+TGG | + | chr6_4:44499968-44499987 | None:intergenic | 20.0% |
| !! | TAACTAATACTGAATCAAAA+TGG | + | chr6_4:44500041-44500060 | None:intergenic | 20.0% |
| !!! | ATTTCACATCTTTTACTTTT+TGG | - | chr6_4:44500363-44500382 | Msa0989130:intron | 20.0% |
| !! | ATAAGTACTAACATATAAGA+GGG | + | chr6_4:44500552-44500571 | None:intergenic | 20.0% |
| !! | AAACAATATACAGAAACAAA+AGG | + | chr6_4:44500788-44500807 | None:intergenic | 20.0% |
| !!! | TCTATTCCTTCTTTTTATAA+AGG | + | chr6_4:44501338-44501357 | None:intergenic | 20.0% |
| !!! | CTTTATTCAAATACTTTTCT+TGG | - | chr6_4:44501367-44501386 | Msa0989130:CDS | 20.0% |
| !!! | ATTAGACTAGTTTCTTATTT+AGG | - | chr6_4:44501562-44501581 | Msa0989130:intron | 20.0% |
| !! | ATTCATTGGATATTATAGTT+AGG | - | chr6_4:44501607-44501626 | Msa0989130:intron | 20.0% |
| !! | TTTAAAAATCAAAGCCTAAA+AGG | - | chr6_4:44501748-44501767 | Msa0989130:intron | 20.0% |
| !! | TTAAAAATCAAAGCCTAAAA+GGG | - | chr6_4:44501749-44501768 | Msa0989130:intron | 20.0% |
| !!! | GATGTTTCTATTTTTGTTTT+TGG | - | chr6_4:44501982-44502001 | Msa0989130:intron | 20.0% |
| !!! | TTTTCATAAGTTCTCATAAA+CGG | + | chr6_4:44502317-44502336 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCATAAGCTATCT+TGG | + | chr6_4:44502396-44502415 | None:intergenic | 20.0% |
| !!! | TTTTTTATTTTTGTTGCTTC+AGG | - | chr6_4:44502638-44502657 | Msa0989130:intron | 20.0% |
| ! | GATTGAAATAGGAATTAGAA+TGG | + | chr6_4:44498498-44498517 | None:intergenic | 25.0% |
| ! | AAAATAGATCAACCTTCAAA+TGG | + | chr6_4:44498676-44498695 | None:intergenic | 25.0% |
| ! | AGTTTAATTGTAATTAGTGG+AGG | - | chr6_4:44498940-44498959 | Msa0989130:intron | 25.0% |
| ! | TGTGAAAAGAATCAAAACTT+TGG | - | chr6_4:44499031-44499050 | Msa0989130:intron | 25.0% |
| ! | AATCAATCTATATGTCTGTT+TGG | - | chr6_4:44499644-44499663 | Msa0989130:intron | 25.0% |
| ! | ATCAATCTATATGTCTGTTT+GGG | - | chr6_4:44499645-44499664 | Msa0989130:intron | 25.0% |
| ! | TTATATTGAGAACCTGAAAA+TGG | + | chr6_4:44499805-44499824 | None:intergenic | 25.0% |
| ! | TGAATATCTTAGCAGATATT+AGG | - | chr6_4:44499848-44499867 | Msa0989130:intron | 25.0% |
| ! | TAGGATCCAATTATGAAATT+AGG | + | chr6_4:44499886-44499905 | None:intergenic | 25.0% |
| ! | GATTGTAAAAATTGCATACA+AGG | + | chr6_4:44499918-44499937 | None:intergenic | 25.0% |
| ! | ATACAATTTGGTTGTGTTAT+TGG | + | chr6_4:44499956-44499975 | None:intergenic | 25.0% |
| ! | TCATGAATATCAAGATAACT+CGG | + | chr6_4:44500015-44500034 | None:intergenic | 25.0% |
| ! | AAGGAAGCTACAAAAAATTT+AGG | - | chr6_4:44500097-44500116 | Msa0989130:intron | 25.0% |
| !! | GAGACAGATTATATGTTTTT+CGG | - | chr6_4:44500212-44500231 | Msa0989130:intron | 25.0% |
| !!! | AAGATTATGTGATGTTTTGA+GGG | - | chr6_4:44500245-44500264 | Msa0989130:intron | 25.0% |
| ! | TTTGAAAGAGTTGAAGAATA+TGG | - | chr6_4:44500314-44500333 | Msa0989130:intron | 25.0% |
| ! | ATAAATACCTCAAGATAAAG+AGG | + | chr6_4:44500345-44500364 | None:intergenic | 25.0% |
| !!! | TCTTTTACTTTTTGGTACAA+TGG | - | chr6_4:44500371-44500390 | Msa0989130:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+AGG | + | chr6_4:44500511-44500530 | None:intergenic | 25.0% |
| ! | CATAAGTACTAACATATAAG+AGG | + | chr6_4:44500553-44500572 | None:intergenic | 25.0% |
| !! | ATTAAGCAATCACTATTTTG+TGG | + | chr6_4:44501156-44501175 | None:intergenic | 25.0% |
| ! | TTAGTAGGAAGAGTTTAATT+AGG | + | chr6_4:44501290-44501309 | None:intergenic | 25.0% |
| ! | TAATTAAACTCTTCCTACTA+AGG | - | chr6_4:44501289-44501308 | Msa0989130:CDS | 25.0% |
| !! | TATTCAAATACTTTTCTTGG+TGG | - | chr6_4:44501370-44501389 | Msa0989130:CDS | 25.0% |
| !! | ATTCAAATACTTTTCTTGGT+GGG | - | chr6_4:44501371-44501390 | Msa0989130:CDS | 25.0% |
| ! | GATTTATATACTTTCATAGG+TGG | - | chr6_4:44501487-44501506 | Msa0989130:intron | 25.0% |
| !!! | TTTGATTTTTAAACAGAGCA+AGG | + | chr6_4:44501741-44501760 | None:intergenic | 25.0% |
| !!! | TCACTAGCTGTTTTTATTTT+CGG | - | chr6_4:44502352-44502371 | Msa0989130:intron | 25.0% |
| ! | CAAATTTCAAAATCTTGTGA+TGG | - | chr6_4:44502581-44502600 | Msa0989130:intron | 25.0% |
| ! | TGACTTTAGTTTCCATTTGA+AGG | - | chr6_4:44498661-44498680 | Msa0989130:intron | 30.0% |
| ACAAGCATAAATCACTTAAC+AGG | + | chr6_4:44498732-44498751 | None:intergenic | 30.0% | |
| !! | TTTTGATTCTTTTCACAACC+TGG | + | chr6_4:44499028-44499047 | None:intergenic | 30.0% |
| TCACAATATACGCAAAAATG+AGG | + | chr6_4:44499457-44499476 | None:intergenic | 30.0% | |
| !!! | ATAACTCGGTTTTTTCGATA+AGG | + | chr6_4:44500001-44500020 | None:intergenic | 30.0% |
| ATTGTAGAAGAAGTGATAGA+AGG | - | chr6_4:44500078-44500097 | Msa0989130:intron | 30.0% | |
| GAAGCTACAAAAAATTTAGG+TGG | - | chr6_4:44500100-44500119 | Msa0989130:intron | 30.0% | |
| AATTTAGGTGGAATGAGATA+CGG | - | chr6_4:44500112-44500131 | Msa0989130:intron | 30.0% | |
| !! | ATATGTTTTTCGGAAGAACA+AGG | - | chr6_4:44500222-44500241 | Msa0989130:intron | 30.0% |
| ! | GAAGATTATGTGATGTTTTG+AGG | - | chr6_4:44500244-44500263 | Msa0989130:intron | 30.0% |
| !! | CATTTATTATAGGCCTTGTT+TGG | - | chr6_4:44500495-44500514 | Msa0989130:intron | 30.0% |
| !! | GCTGTTTTATTAAGCTATCT+TGG | - | chr6_4:44500634-44500653 | Msa0989130:intron | 30.0% |
| TGACATATTTACTGCTCTAT+AGG | - | chr6_4:44500814-44500833 | Msa0989130:intron | 30.0% | |
| !! | GGAGTTTCTAGATTTTATTC+TGG | - | chr6_4:44500861-44500880 | Msa0989130:intron | 30.0% |
| !! | GTTTCTAGATTTTATTCTGG+AGG | - | chr6_4:44500864-44500883 | Msa0989130:intron | 30.0% |
| CCTTAAATCAAAACCTTAGT+AGG | + | chr6_4:44501305-44501324 | None:intergenic | 30.0% | |
| !!! | CCTACTAAGGTTTTGATTTA+AGG | - | chr6_4:44501302-44501321 | Msa0989130:CDS | 30.0% |
| AAATCAAGTCGCATATATTC+AGG | + | chr6_4:44501411-44501430 | None:intergenic | 30.0% | |
| TGAATATATGCGACTTGATT+TGG | - | chr6_4:44501410-44501429 | Msa0989130:CDS | 30.0% | |
| TCGATGAAATAACTTAGCTT+TGG | - | chr6_4:44501643-44501662 | Msa0989130:intron | 30.0% | |
| TGTTTGTTTCATTAGTGTCT+TGG | - | chr6_4:44501679-44501698 | Msa0989130:intron | 30.0% | |
| ! | GATCAGTGAAAATTCTGAAA+TGG | - | chr6_4:44501901-44501920 | Msa0989130:intron | 30.0% |
| ! | TTTTCTGCCAATACTTTGTT+AGG | + | chr6_4:44501930-44501949 | None:intergenic | 30.0% |
| TATGACATGAATATGATCGA+TGG | - | chr6_4:44502152-44502171 | Msa0989130:intron | 30.0% | |
| ATGACATGAATATGATCGAT+GGG | - | chr6_4:44502153-44502172 | Msa0989130:intron | 30.0% | |
| CACTAACTCTGATTATTTGT+TGG | - | chr6_4:44502214-44502233 | Msa0989130:intron | 30.0% | |
| ! | TGCTTTCTGAATTTCAGTTT+TGG | - | chr6_4:44502247-44502266 | Msa0989130:intron | 30.0% |
| ATTAAGCTGTTTATCCAAAC+AGG | - | chr6_4:44502484-44502503 | Msa0989130:intron | 30.0% | |
| TTAAGCTGTTTATCCAAACA+GGG | - | chr6_4:44502485-44502504 | Msa0989130:intron | 30.0% | |
| !!! | TTTATTTTTGTTGCTTCAGG+AGG | - | chr6_4:44502641-44502660 | Msa0989130:intron | 30.0% |
| TATGTGAATTAAGCTCCTTT+AGG | + | chr6_4:44502739-44502758 | None:intergenic | 30.0% | |
| AAAGGAGCTTAATTCACATA+TGG | - | chr6_4:44502739-44502758 | Msa0989130:intron | 30.0% | |
| TCATCTATTACTAGGAATGT+TGG | - | chr6_4:44502800-44502819 | Msa0989130:CDS | 30.0% | |
| ! | TGTTACTTACTCGCTTTGTT+TGG | - | chr6_4:44498557-44498576 | Msa0989130:exon | 35.0% |
| !! | CGCTCTGTTGCTATTTATTT+AGG | - | chr6_4:44499668-44499687 | Msa0989130:intron | 35.0% |
| AAAGCGAAAGTTACTACAGA+AGG | + | chr6_4:44499775-44499794 | None:intergenic | 35.0% | |
| !! | GCTTTTTCTTCACCATTTTC+AGG | - | chr6_4:44499790-44499809 | Msa0989130:intron | 35.0% |
| GATTCAGTATTAGTTAGCGT+CGG | - | chr6_4:44500045-44500064 | Msa0989130:intron | 35.0% | |
| ATTTAGGTGGAATGAGATAC+GGG | - | chr6_4:44500113-44500132 | Msa0989130:intron | 35.0% | |
| TATCACGGATGAACAAAAAC+AGG | - | chr6_4:44500140-44500159 | Msa0989130:intron | 35.0% | |
| AGCTAAACTTCCATTGAAGA+TGG | - | chr6_4:44500167-44500186 | Msa0989130:intron | 35.0% | |
| CAAAGTACAATTGCAGGTTA+GGG | + | chr6_4:44500462-44500481 | None:intergenic | 35.0% | |
| AAGCTATCTTGGAGAACTTA+TGG | - | chr6_4:44500645-44500664 | Msa0989130:intron | 35.0% | |
| AAGCACTTGTGAGATTGTTT+GGG | + | chr6_4:44500719-44500738 | None:intergenic | 35.0% | |
| TAAGCACTTGTGAGATTGTT+TGG | + | chr6_4:44500720-44500739 | None:intergenic | 35.0% | |
| !! | ACAGAAACAAAAGGTACTGT+GGG | + | chr6_4:44500779-44500798 | None:intergenic | 35.0% |
| !! | TACAGAAACAAAAGGTACTG+TGG | + | chr6_4:44500780-44500799 | None:intergenic | 35.0% |
| AGTGAGACGTTTCCTAAAAT+TGG | - | chr6_4:44501006-44501025 | Msa0989130:CDS | 35.0% | |
| TTTCCTAAAATTGGCCATTC+TGG | - | chr6_4:44501015-44501034 | Msa0989130:CDS | 35.0% | |
| TTCCTAAAATTGGCCATTCT+GGG | - | chr6_4:44501016-44501035 | Msa0989130:CDS | 35.0% | |
| ATTCTCTGTGTTCTGTCATA+TGG | - | chr6_4:44501072-44501091 | Msa0989130:CDS | 35.0% | |
| ATCAACTAGATGCAAGTTTG+TGG | - | chr6_4:44501113-44501132 | Msa0989130:intron | 35.0% | |
| TAGATGCAAGTTTGTGGTTT+AGG | - | chr6_4:44501119-44501138 | Msa0989130:intron | 35.0% | |
| GTCCATCATATGACTGTTAT+TGG | - | chr6_4:44501214-44501233 | Msa0989130:CDS | 35.0% | |
| CACCAATAACAGTCATATGA+TGG | + | chr6_4:44501219-44501238 | None:intergenic | 35.0% | |
| CATATGACTGTTATTGGTGA+CGG | - | chr6_4:44501220-44501239 | Msa0989130:CDS | 35.0% | |
| ! | ATATGACTGTTATTGGTGAC+GGG | - | chr6_4:44501221-44501240 | Msa0989130:CDS | 35.0% |
| ATCTCGTATTCTAAACATCC+TGG | - | chr6_4:44501261-44501280 | Msa0989130:CDS | 35.0% | |
| ! | AAGAGTTTAATTAGGTTGCC+AGG | + | chr6_4:44501282-44501301 | None:intergenic | 35.0% |
| TTGAAATTCTCTACACTCCA+GGG | + | chr6_4:44501797-44501816 | None:intergenic | 35.0% | |
| ! | TTTGAAATTCTCTACACTCC+AGG | + | chr6_4:44501798-44501817 | None:intergenic | 35.0% |
| ! | AAGTGGCTTACTAAGCTTTT+AGG | + | chr6_4:44501828-44501847 | None:intergenic | 35.0% |
| ! | TCTGGATTGTTTGAGACATA+AGG | - | chr6_4:44501862-44501881 | Msa0989130:intron | 35.0% |
| ATGGTAGCCTAACAAAGTAT+TGG | - | chr6_4:44501920-44501939 | Msa0989130:intron | 35.0% | |
| TCACCATAGGTAATAATCCA+TGG | - | chr6_4:44502188-44502207 | Msa0989130:intron | 35.0% | |
| ! | TAGCCATGGATTATTACCTA+TGG | + | chr6_4:44502194-44502213 | None:intergenic | 35.0% |
| AACAGAAATTACGTGTTCAC+AGG | - | chr6_4:44502534-44502553 | Msa0989130:intron | 35.0% | |
| ACAGAAATTACGTGTTCACA+GGG | - | chr6_4:44502535-44502554 | Msa0989130:intron | 35.0% | |
| TGTTAAATGACCATGAGAGT+TGG | - | chr6_4:44502671-44502690 | Msa0989130:intron | 35.0% | |
| TAGTGTCTGACTTCTATTCA+TGG | + | chr6_4:44502704-44502723 | None:intergenic | 35.0% | |
| CTTGCATCTATGAACGAATT+AGG | + | chr6_4:44502776-44502795 | None:intergenic | 35.0% | |
| AATTCGTTCATAGATGCAAG+AGG | - | chr6_4:44502776-44502795 | Msa0989130:CDS | 35.0% | |
| CAAGAGGATCATCTATTACT+AGG | - | chr6_4:44502792-44502811 | Msa0989130:CDS | 35.0% | |
| ! | ATCGTCGAGGAGATTCATTT+TGG | + | chr6_4:44498409-44498428 | None:intergenic | 40.0% |
| TTGAAAACGCATCACTTTCC+AGG | - | chr6_4:44499007-44499026 | Msa0989130:intron | 40.0% | |
| ! | TGACATTTTTAACCGCGAAG+CGG | - | chr6_4:44499098-44499117 | Msa0989130:intron | 40.0% |
| GTGTTAGATGAAGCATACAG+AGG | - | chr6_4:44499142-44499161 | Msa0989130:intron | 40.0% | |
| ATGAAGCATACAGAGGACAT+GGG | - | chr6_4:44499149-44499168 | Msa0989130:intron | 40.0% | |
| GAACTACTCGATGACTTGAA+AGG | - | chr6_4:44499187-44499206 | Msa0989130:intron | 40.0% | |
| AGCGTGTCACAGAACAATAA+CGG | + | chr6_4:44499287-44499306 | None:intergenic | 40.0% | |
| TTGTTCTGTGACACGCTATT+TGG | - | chr6_4:44499290-44499309 | Msa0989130:intron | 40.0% | |
| CTGTGAAATAGCAGATTCAG+CGG | - | chr6_4:44499322-44499341 | Msa0989130:intron | 40.0% | |
| ! | TTTGGAATAAAGCCACTGAG+GGG | + | chr6_4:44499523-44499542 | None:intergenic | 40.0% |
| ! | GTTTGGAATAAAGCCACTGA+GGG | + | chr6_4:44499524-44499543 | None:intergenic | 40.0% |
| AAAGCCATCTGGAAATCCAT+TGG | - | chr6_4:44499554-44499573 | Msa0989130:intron | 40.0% | |
| AAGCCATCTGGAAATCCATT+GGG | - | chr6_4:44499555-44499574 | Msa0989130:intron | 40.0% | |
| GCATACAAGGTTACTGCAAT+AGG | + | chr6_4:44499905-44499924 | None:intergenic | 40.0% | |
| TTTAGGTGGAATGAGATACG+GGG | - | chr6_4:44500114-44500133 | Msa0989130:intron | 40.0% | |
| TGAGATACGGGGTAATATCA+CGG | - | chr6_4:44500125-44500144 | Msa0989130:intron | 40.0% | |
| CATCGCTTAACCATCTTCAA+TGG | + | chr6_4:44500180-44500199 | None:intergenic | 40.0% | |
| GAAGATGGTTAAGCGATGTA+AGG | - | chr6_4:44500182-44500201 | Msa0989130:intron | 40.0% | |
| !!! | TATGTGATGTTTTGAGGGCT+TGG | - | chr6_4:44500250-44500269 | Msa0989130:intron | 40.0% |
| !!! | ATGTGATGTTTTGAGGGCTT+GGG | - | chr6_4:44500251-44500270 | Msa0989130:intron | 40.0% |
| GGATCATCCTCTTTATCTTG+AGG | - | chr6_4:44500335-44500354 | Msa0989130:intron | 40.0% | |
| GCAAAGTACAATTGCAGGTT+AGG | + | chr6_4:44500463-44500482 | None:intergenic | 40.0% | |
| AAGACGCAAAGTACAATTGC+AGG | + | chr6_4:44500468-44500487 | None:intergenic | 40.0% | |
| !! | CAGAAACAAAAGGTACTGTG+GGG | + | chr6_4:44500778-44500797 | None:intergenic | 40.0% |
| TCGTCTGACAACAGAAACTT+GGG | + | chr6_4:44500975-44500994 | None:intergenic | 40.0% | |
| TTACAGTGAAAGACCCAGAA+TGG | + | chr6_4:44501032-44501051 | None:intergenic | 40.0% | |
| ! | CAAATACTTTTCTTGGTGGG+TGG | - | chr6_4:44501374-44501393 | Msa0989130:CDS | 40.0% |
| !! | TAACTTAGCTTTGGCTTGTG+TGG | - | chr6_4:44501652-44501671 | Msa0989130:intron | 40.0% |
| ! | CAAGGCACTCTATACTACAA+GGG | + | chr6_4:44501723-44501742 | None:intergenic | 40.0% |
| GAGAGACAATAATGTTGCAC+AGG | + | chr6_4:44501775-44501794 | None:intergenic | 40.0% | |
| !!! | GTAAGCCACTTTTGTTGTGT+TGG | - | chr6_4:44501837-44501856 | Msa0989130:intron | 40.0% |
| AGACACCAACACAACAAAAG+TGG | + | chr6_4:44501845-44501864 | None:intergenic | 40.0% | |
| !! | ACTTTTGTTGTGTTGGTGTC+TGG | - | chr6_4:44501844-44501863 | Msa0989130:intron | 40.0% |
| TATTGGCAGAAAAGCTACAG+AGG | - | chr6_4:44501937-44501956 | Msa0989130:intron | 40.0% | |
| TATGAGGCAAGCAGGTATAT+TGG | - | chr6_4:44502019-44502038 | Msa0989130:intron | 40.0% | |
| GTATAGCTGAAACTCACCAT+AGG | - | chr6_4:44502175-44502194 | Msa0989130:intron | 40.0% | |
| AATCAGAGTTAGTGTAGCCA+TGG | + | chr6_4:44502208-44502227 | None:intergenic | 40.0% | |
| ATGACCATGAGAGTTGGAAT+CGG | - | chr6_4:44502677-44502696 | Msa0989130:intron | 40.0% | |
| GATGAAGCATACAGAGGACA+TGG | - | chr6_4:44499148-44499167 | Msa0989130:intron | 45.0% | |
| TGAAGCATACAGAGGACATG+GGG | - | chr6_4:44499150-44499169 | Msa0989130:intron | 45.0% | |
| TAAAGCCACTGAGGGGATAA+CGG | + | chr6_4:44499516-44499535 | None:intergenic | 45.0% | |
| ! | GGTTTGGAATAAAGCCACTG+AGG | + | chr6_4:44499525-44499544 | None:intergenic | 45.0% |
| ! | TGGCTTTGCATCAACAGGTT+TGG | + | chr6_4:44499541-44499560 | None:intergenic | 45.0% |
| AGCCATCTGGAAATCCATTG+GGG | - | chr6_4:44499556-44499575 | Msa0989130:intron | 45.0% | |
| !! | ATTAGTTAGCGTCGGTACAG+AGG | - | chr6_4:44500053-44500072 | Msa0989130:intron | 45.0% |
| GATGGTTAAGCGATGTAAGG+CGG | - | chr6_4:44500185-44500204 | Msa0989130:intron | 45.0% | |
| !! | TACGAGAGCTGATTGGCTTT+CGG | - | chr6_4:44500290-44500309 | Msa0989130:intron | 45.0% |
| TACTGTGGGGCTGTTTGTAT+TGG | + | chr6_4:44500765-44500784 | None:intergenic | 45.0% | |
| AGGAGTTGTTGACACCTTGT+CGG | - | chr6_4:44500884-44500903 | Msa0989130:intron | 45.0% | |
| AAAGCAACTAGATGCCGACA+AGG | + | chr6_4:44500901-44500920 | None:intergenic | 45.0% | |
| CTCGTCTGACAACAGAAACT+TGG | + | chr6_4:44500976-44500995 | None:intergenic | 45.0% | |
| ! | GACCCAGAATGGCCAATTTT+AGG | + | chr6_4:44501021-44501040 | None:intergenic | 45.0% |
| ! | GCAAGGCACTCTATACTACA+AGG | + | chr6_4:44501724-44501743 | None:intergenic | 45.0% |
| ! | AATGTTGCACAGGCCCTTTT+AGG | + | chr6_4:44501765-44501784 | None:intergenic | 45.0% |
| GCAACATTATTGTCTCTCCC+TGG | - | chr6_4:44501777-44501796 | Msa0989130:intron | 45.0% | |
| GGCAGAGTGCATGTAATATG+AGG | - | chr6_4:44502003-44502022 | Msa0989130:intron | 45.0% | |
| GCATGTAATATGAGGCAAGC+AGG | - | chr6_4:44502011-44502030 | Msa0989130:intron | 45.0% | |
| AGATTACCATTTCCCTGCGT+AGG | + | chr6_4:44502511-44502530 | None:intergenic | 45.0% | |
| TTCACAGGGTTCGTAAAGGA+GGG | - | chr6_4:44502549-44502568 | Msa0989130:intron | 45.0% | |
| GGTTCGTAAAGGAGGGAATA+TGG | - | chr6_4:44502556-44502575 | Msa0989130:intron | 45.0% | |
| CTACCAACACAGCATCCTAA+AGG | - | chr6_4:44502721-44502740 | Msa0989130:intron | 45.0% | |
| !!! | TATTTTTTTGATTAATTTTT+AGG | - | chr6_4:44498637-44498656 | Msa0989130:intron | 5.0% |
| TGGATGAGAAGAGATCGTCG+AGG | + | chr6_4:44498422-44498441 | None:intergenic | 50.0% | |
| ! | GAGAGAAGAGTGCGACGAAT+CGG | + | chr6_4:44498451-44498470 | None:intergenic | 50.0% |
| TCGTCGCACTCTTCTCTCAA+AGG | - | chr6_4:44498453-44498472 | Msa0989130:three_prime_UTR | 50.0% | |
| ! | GCGGCTAATTGCGTGCTTTT+TGG | - | chr6_4:44499117-44499136 | Msa0989130:intron | 50.0% |
| TACAGAGGACATGGGGAGAA+AGG | - | chr6_4:44499157-44499176 | Msa0989130:intron | 50.0% | |
| !! | ACATGGGGAGAAAGGCATTG+CGG | - | chr6_4:44499165-44499184 | Msa0989130:intron | 50.0% |
| ! | CCAGATGGCTTTGCATCAAC+AGG | + | chr6_4:44499546-44499565 | None:intergenic | 50.0% |
| CCTGTTGATGCAAAGCCATC+TGG | - | chr6_4:44499543-44499562 | Msa0989130:intron | 50.0% | |
| GCCATCTGGAAATCCATTGG+GGG | - | chr6_4:44499557-44499576 | Msa0989130:intron | 50.0% | |
| ! | ACCCCCAATGGATTTCCAGA+TGG | + | chr6_4:44499561-44499580 | None:intergenic | 50.0% |
| CGAGAGTTACATACCCCCAA+TGG | + | chr6_4:44499573-44499592 | None:intergenic | 50.0% | |
| !!! | TGATGTTTTGAGGGCTTGGG+TGG | - | chr6_4:44500254-44500273 | Msa0989130:intron | 50.0% |
| TGAAGCCTACGAGAGCTGAT+TGG | - | chr6_4:44500283-44500302 | Msa0989130:intron | 50.0% | |
| GAAAGCCAATCAGCTCTCGT+AGG | + | chr6_4:44500291-44500310 | None:intergenic | 50.0% | |
| !! | ACTGTTATTGGTGACGGGTG+CGG | - | chr6_4:44501226-44501245 | Msa0989130:CDS | 50.0% |
| CGTGTTCACAGGGTTCGTAA+AGG | - | chr6_4:44502545-44502564 | Msa0989130:intron | 50.0% | |
| GTTCACAGGGTTCGTAAAGG+AGG | - | chr6_4:44502548-44502567 | Msa0989130:intron | 50.0% | |
| ! | TGGACCGATTCCAACTCTCA+TGG | + | chr6_4:44502684-44502703 | None:intergenic | 50.0% |
| !! | GCTCCTTTAGGATGCTGTGT+TGG | + | chr6_4:44502727-44502746 | None:intergenic | 50.0% |
| GTGCGACGAATCGGTGAGTT+TGG | + | chr6_4:44498442-44498461 | None:intergenic | 55.0% | |
| GCATACCGTTATCCCCTCAG+TGG | - | chr6_4:44499508-44499527 | Msa0989130:intron | 55.0% | |
| TATCCAAACAGGGCCTACGC+AGG | - | chr6_4:44502495-44502514 | Msa0989130:intron | 55.0% | |
| ATCCAAACAGGGCCTACGCA+GGG | - | chr6_4:44502496-44502515 | Msa0989130:intron | 55.0% | |
| GCACGCAATTAGCCGCTTCG+CGG | + | chr6_4:44499113-44499132 | None:intergenic | 60.0% | |
| TTCCCTGCGTAGGCCCTGTT+TGG | + | chr6_4:44502501-44502520 | None:intergenic | 60.0% | |
| ACAGGGCCTACGCAGGGAAA+TGG | - | chr6_4:44502502-44502521 | Msa0989130:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 44498387 | 44502855 | 44498387 | ID=Msa0989130;Name=Msa0989130 |
| chr6_4 | mRNA | 44498387 | 44502855 | 44498387 | ID=Msa0989130-mRNA-1;Parent=Msa0989130;Name=Msa0989130-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0.11|0.1|0.5|0.11|0.2|10|175|210 |
| chr6_4 | exon | 44498387 | 44498582 | 44498387 | ID=Msa0989130-mRNA-1:exon:10213;Parent=Msa0989130-mRNA-1 |
| chr6_4 | exon | 44500886 | 44501123 | 44500886 | ID=Msa0989130-mRNA-1:exon:10212;Parent=Msa0989130-mRNA-1 |
| chr6_4 | exon | 44501162 | 44501169 | 44501162 | ID=Msa0989130-mRNA-1:exon:10211;Parent=Msa0989130-mRNA-1 |
| chr6_4 | exon | 44501186 | 44501430 | 44501186 | ID=Msa0989130-mRNA-1:exon:10210;Parent=Msa0989130-mRNA-1 |
| chr6_4 | exon | 44501728 | 44501733 | 44501728 | ID=Msa0989130-mRNA-1:exon:10209;Parent=Msa0989130-mRNA-1 |
| chr6_4 | exon | 44502294 | 44502300 | 44502294 | ID=Msa0989130-mRNA-1:exon:10208;Parent=Msa0989130-mRNA-1 |
| chr6_4 | exon | 44502430 | 44502435 | 44502430 | ID=Msa0989130-mRNA-1:exon:10207;Parent=Msa0989130-mRNA-1 |
| chr6_4 | exon | 44502521 | 44502528 | 44502521 | ID=Msa0989130-mRNA-1:exon:10206;Parent=Msa0989130-mRNA-1 |
| chr6_4 | exon | 44502691 | 44502696 | 44502691 | ID=Msa0989130-mRNA-1:exon:10205;Parent=Msa0989130-mRNA-1 |
| chr6_4 | exon | 44502768 | 44502855 | 44502768 | ID=Msa0989130-mRNA-1:exon:10204;Parent=Msa0989130-mRNA-1 |
| chr6_4 | CDS | 44502768 | 44502855 | 44502768 | ID=Msa0989130-mRNA-1:cds;Parent=Msa0989130-mRNA-1 |
| chr6_4 | CDS | 44502691 | 44502696 | 44502691 | ID=Msa0989130-mRNA-1:cds;Parent=Msa0989130-mRNA-1 |
| chr6_4 | CDS | 44502521 | 44502528 | 44502521 | ID=Msa0989130-mRNA-1:cds;Parent=Msa0989130-mRNA-1 |
| chr6_4 | CDS | 44502430 | 44502435 | 44502430 | ID=Msa0989130-mRNA-1:cds;Parent=Msa0989130-mRNA-1 |
| chr6_4 | CDS | 44502294 | 44502300 | 44502294 | ID=Msa0989130-mRNA-1:cds;Parent=Msa0989130-mRNA-1 |
| chr6_4 | CDS | 44501728 | 44501733 | 44501728 | ID=Msa0989130-mRNA-1:cds;Parent=Msa0989130-mRNA-1 |
| chr6_4 | CDS | 44501186 | 44501430 | 44501186 | ID=Msa0989130-mRNA-1:cds;Parent=Msa0989130-mRNA-1 |
| chr6_4 | CDS | 44501162 | 44501169 | 44501162 | ID=Msa0989130-mRNA-1:cds;Parent=Msa0989130-mRNA-1 |
| chr6_4 | CDS | 44500886 | 44501123 | 44500886 | ID=Msa0989130-mRNA-1:cds;Parent=Msa0989130-mRNA-1 |
| chr6_4 | CDS | 44498562 | 44498582 | 44498562 | ID=Msa0989130-mRNA-1:cds;Parent=Msa0989130-mRNA-1 |
| chr6_4 | three_prime_UTR | 44498387 | 44498561 | 44498387 | ID=Msa0989130-mRNA-1:three_prime_utr;Parent=Msa0989130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
