Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991860 | XP_003620724.3 | 79.943 | 349 | 12 | 3 | 1 | 291 | 1 | 349 | 0.0 | 533 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991860 | sp|Q9FLH8|SCRK7_ARATH | 65.015 | 323 | 58 | 2 | 18 | 285 | 16 | 338 | 4.41e-146 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991860 | A0A396HJ77 | 79.943 | 349 | 12 | 3 | 1 | 291 | 1 | 349 | 0.0 | 533 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0991860 | Msa1235460 | 0.808279 | 3.347784e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991860 | MtrunA17_Chr6g0474331 | 79.943 | 349 | 12 | 3 | 1 | 291 | 1 | 349 | 0.0 | 533 |
| Msa0991860 | MtrunA17_Chr1g0204101 | 69.760 | 334 | 45 | 3 | 6 | 284 | 5 | 337 | 4.05e-159 | 446 |
| Msa0991860 | MtrunA17_Chr5g0434971 | 63.438 | 320 | 61 | 3 | 23 | 287 | 65 | 383 | 6.45e-130 | 374 |
| Msa0991860 | MtrunA17_Chr1g0188291 | 54.114 | 316 | 88 | 4 | 25 | 285 | 8 | 321 | 1.45e-116 | 338 |
| Msa0991860 | MtrunA17_Chr1g0183241 | 59.740 | 308 | 78 | 3 | 17 | 284 | 102 | 403 | 2.39e-116 | 340 |
| Msa0991860 | MtrunA17_Chr4g0033631 | 53.271 | 321 | 93 | 4 | 23 | 288 | 13 | 331 | 3.44e-111 | 325 |
| Msa0991860 | MtrunA17_Chr2g0329451 | 52.516 | 318 | 94 | 4 | 23 | 285 | 12 | 327 | 9.27e-111 | 323 |
| Msa0991860 | MtrunA17_Chr1g0183661 | 56.272 | 279 | 69 | 4 | 40 | 270 | 3 | 276 | 3.04e-96 | 285 |
| Msa0991860 | MtrunA17_Chr1g0171921 | 52.108 | 332 | 95 | 7 | 17 | 289 | 175 | 501 | 6.73e-93 | 284 |
| Msa0991860 | MtrunA17_Chr1g0177771 | 52.997 | 317 | 96 | 5 | 17 | 286 | 245 | 555 | 7.50e-92 | 283 |
| Msa0991860 | MtrunA17_Chr1g0177321 | 49.387 | 326 | 85 | 6 | 17 | 286 | 171 | 472 | 3.76e-80 | 250 |
| Msa0991860 | MtrunA17_Chr1g0176221 | 53.917 | 217 | 78 | 4 | 86 | 287 | 1 | 210 | 7.12e-68 | 210 |
| Msa0991860 | MtrunA17_Chr7g0246421 | 54.922 | 193 | 48 | 1 | 133 | 286 | 2 | 194 | 7.50e-66 | 204 |
| Msa0991860 | MtrunA17_Chr4g0020911 | 66.667 | 117 | 39 | 0 | 133 | 249 | 56 | 172 | 1.27e-45 | 152 |
| Msa0991860 | MtrunA17_Chr7g0246411 | 55.118 | 127 | 39 | 2 | 25 | 133 | 41 | 167 | 5.01e-38 | 132 |
| Msa0991860 | MtrunA17_Chr5g0419371 | 30.769 | 286 | 144 | 7 | 13 | 247 | 192 | 474 | 3.20e-32 | 125 |
| Msa0991860 | MtrunA17_Chr4g0008441 | 28.520 | 277 | 142 | 5 | 25 | 245 | 93 | 369 | 2.50e-26 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991860 | AT5G51830.2 | 65.015 | 323 | 58 | 2 | 18 | 285 | 16 | 338 | 4.49e-147 | 416 |
| Msa0991860 | AT5G51830.1 | 65.015 | 323 | 58 | 2 | 18 | 285 | 16 | 338 | 4.49e-147 | 416 |
| Msa0991860 | AT1G66430.1 | 58.523 | 352 | 82 | 4 | 2 | 290 | 34 | 384 | 6.16e-135 | 387 |
| Msa0991860 | AT4G10260.1 | 57.419 | 310 | 75 | 4 | 23 | 277 | 4 | 311 | 1.10e-119 | 346 |
| Msa0991860 | AT3G59480.1 | 54.574 | 317 | 87 | 4 | 24 | 285 | 9 | 323 | 1.91e-116 | 338 |
| Msa0991860 | AT2G31390.1 | 54.114 | 316 | 88 | 4 | 25 | 285 | 9 | 322 | 2.65e-114 | 332 |
| Msa0991860 | AT1G06020.1 | 53.481 | 316 | 90 | 3 | 25 | 285 | 10 | 323 | 6.63e-113 | 330 |
| Msa0991860 | AT1G06030.1 | 52.812 | 320 | 94 | 4 | 21 | 285 | 7 | 324 | 5.71e-112 | 327 |
| Msa0991860 | AT1G69200.1 | 32.599 | 227 | 122 | 4 | 51 | 247 | 246 | 471 | 6.50e-32 | 124 |
| Msa0991860 | AT3G54090.1 | 30.686 | 277 | 135 | 6 | 25 | 245 | 103 | 378 | 4.91e-31 | 121 |
| Msa0991860 | AT1G50390.1 | 37.427 | 171 | 37 | 2 | 154 | 285 | 1 | 140 | 6.90e-27 | 102 |
Find 67 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATAAAGAAGAAATTAA+TGG | 0.201929 | 6_4:-58190238 | None:intergenic |
| TGCTGTTGGTATATCTAAAT+TGG | 0.213299 | 6_4:+58192188 | Msa0991860:CDS |
| AATTGTTACCGAAGGTTCTA+AGG | 0.243118 | 6_4:+58193342 | Msa0991860:CDS |
| CAGAACAATGTTGATACTTC+TGG | 0.257090 | 6_4:+58192639 | Msa0991860:intron |
| GGAATGGCATAATGAGTATA+TGG | 0.266779 | 6_4:+58193050 | Msa0991860:CDS |
| CGAATTTAAGATTGGTGTTA+TGG | 0.287279 | 6_4:+58193008 | Msa0991860:CDS |
| GTTCACTGGTTGTTTCCTTT+GGG | 0.302611 | 6_4:+58192070 | Msa0991860:CDS |
| TGTGAAACAGCTTCCTTTGT+AGG | 0.304120 | 6_4:-58195498 | None:intergenic |
| ATGAAGATTGCCAAAAGTTC+TGG | 0.318686 | 6_4:+58192965 | Msa0991860:CDS |
| AGTTCACTGGTTGTTTCCTT+TGG | 0.322009 | 6_4:+58192069 | Msa0991860:CDS |
| CCAGTGAACTTGTTTCCTTA+TGG | 0.328368 | 6_4:-58192056 | None:intergenic |
| ACCTCTTTCTGTAACTGTTA+TGG | 0.347968 | 6_4:-58195460 | None:intergenic |
| GAGAATGGAACCAGAACTTT+TGG | 0.364359 | 6_4:-58192975 | None:intergenic |
| TTAAACTAATTGAGCCATAA+TGG | 0.372891 | 6_4:-58192907 | None:intergenic |
| GCATATCAGCACTTGGATTC+CGG | 0.387276 | 6_4:-58192743 | None:intergenic |
| GGATCAAGCCGATGTCATTA+AGG | 0.392693 | 6_4:+58193072 | Msa0991860:CDS |
| GGCCGTCTGCCGAGGCTGCT+CGG | 0.399158 | 6_4:+58193029 | Msa0991860:CDS |
| CATAACACCAATCTTAAATT+CGG | 0.401326 | 6_4:-58193007 | None:intergenic |
| AAAACAACATCATCATCATT+AGG | 0.412207 | 6_4:-58193286 | None:intergenic |
| AAGAAATTAATGGACCGAAA+AGG | 0.442736 | 6_4:-58190228 | None:intergenic |
| ATATGATCCGAATTTAAGAT+TGG | 0.443781 | 6_4:+58193000 | Msa0991860:CDS |
| AGAAATTAATGGACCGAAAA+GGG | 0.457687 | 6_4:-58190227 | None:intergenic |
| GCTGTTGGTATATCTAAATT+GGG | 0.462847 | 6_4:+58192189 | Msa0991860:CDS |
| GCTCACTCTAATACCCCATC+AGG | 0.482096 | 6_4:+58190361 | Msa0991860:CDS |
| GAATGGCATAATGAGTATAT+GGG | 0.488190 | 6_4:+58193051 | Msa0991860:CDS |
| TTCCGAGCAGCCTCGGCAGA+CGG | 0.505848 | 6_4:-58193031 | None:intergenic |
| ATTCGGATCATATGAGAGAA+TGG | 0.506209 | 6_4:-58192990 | None:intergenic |
| CCAGGAGATTTCTTGAAAGC+CGG | 0.511009 | 6_4:-58192147 | None:intergenic |
| AGTGTCGCTCGCCGAGGCAC+CGG | 0.511077 | 6_4:+58192128 | Msa0991860:CDS |
| TCTACAACCCTTAGAACCTT+CGG | 0.515290 | 6_4:-58193350 | None:intergenic |
| TCTTAGAAAAGAAGACCATA+AGG | 0.516761 | 6_4:+58192041 | Msa0991860:CDS |
| TCTGCCGAGGCTGCTCGGAA+TGG | 0.518189 | 6_4:+58193034 | Msa0991860:CDS |
| AGATATACCAACAGCAACAT+TGG | 0.520400 | 6_4:-58192181 | None:intergenic |
| CCGGCTTTCAAGAAATCTCC+TGG | 0.521432 | 6_4:+58192147 | Msa0991860:CDS |
| TTCACTGGTTGTTTCCTTTG+GGG | 0.525662 | 6_4:+58192071 | Msa0991860:CDS |
| GCTTCCTTTGTAGGAAGTGA+AGG | 0.529815 | 6_4:-58195489 | None:intergenic |
| GCCATAACAGTTACAGAAAG+AGG | 0.530881 | 6_4:+58195459 | Msa0991860:CDS |
| TTATAATATTTATGAATGAA+AGG | 0.537008 | 6_4:-58190200 | None:intergenic |
| TGATAGAGATCTCTTAAAGA+AGG | 0.540398 | 6_4:+58192785 | Msa0991860:CDS |
| TTTCTTGAAAGCCGGTGCCT+CGG | 0.540957 | 6_4:-58192139 | None:intergenic |
| TATGCCATTCCGAGCAGCCT+CGG | 0.547132 | 6_4:-58193038 | None:intergenic |
| TTTCTTTACCTTAATGACAT+CGG | 0.550305 | 6_4:-58193080 | None:intergenic |
| CCATAAGGAAACAAGTTCAC+TGG | 0.556670 | 6_4:+58192056 | Msa0991860:CDS |
| AAACTCTTAATTGTTACCGA+AGG | 0.560452 | 6_4:+58193334 | Msa0991860:CDS |
| ATACCAACAGCAACATTGGC+AGG | 0.561076 | 6_4:-58192177 | None:intergenic |
| GAGTAGCAGCAATAAAATCA+AGG | 0.565633 | 6_4:+58195772 | Msa0991860:three_prime_UTR |
| GCTCCTGCCAATGTTGCTGT+TGG | 0.566054 | 6_4:+58192174 | Msa0991860:CDS |
| GTCTATCAACATTTCCCCAA+AGG | 0.569388 | 6_4:-58192085 | None:intergenic |
| TGAAGAAGCATATCAGCACT+TGG | 0.569500 | 6_4:-58192750 | None:intergenic |
| TTTGTCACACTTAGATCTGA+CGG | 0.572030 | 6_4:+58192699 | Msa0991860:CDS |
| ATTGTTACCGAAGGTTCTAA+GGG | 0.576299 | 6_4:+58193343 | Msa0991860:CDS |
| AGCGACACTCCTCCCACAGT+TGG | 0.578152 | 6_4:-58192114 | None:intergenic |
| TATGTATGTACAGATTAGTG+AGG | 0.580961 | 6_4:+58193231 | Msa0991860:intron |
| AATTCCTTCACTTCCTACAA+AGG | 0.581630 | 6_4:+58195485 | Msa0991860:CDS |
| GTATGTACAGATTAGTGAGG+AGG | 0.601214 | 6_4:+58193234 | Msa0991860:intron |
| ACATTGGCAGGAGCTCCACC+AGG | 0.606207 | 6_4:-58192165 | None:intergenic |
| ATAGACTTTGTGCCAACTGT+GGG | 0.616321 | 6_4:+58192102 | Msa0991860:CDS |
| GGTGTTATGGCCGTCTGCCG+AGG | 0.617097 | 6_4:+58193021 | Msa0991860:CDS |
| GACTTTGTGCCAACTGTGGG+AGG | 0.621437 | 6_4:+58192105 | Msa0991860:CDS |
| GATAGACTTTGTGCCAACTG+TGG | 0.624305 | 6_4:+58192101 | Msa0991860:CDS |
| GTTGGTATATCTAAATTGGG+AGG | 0.634166 | 6_4:+58192192 | Msa0991860:CDS |
| GGGAGGAGTGTCGCTCGCCG+AGG | 0.650456 | 6_4:+58192122 | Msa0991860:CDS |
| GCTTTCAAGAAATCTCCTGG+TGG | 0.652256 | 6_4:+58192150 | Msa0991860:CDS |
| ATGTTGATACTTCTGGAATG+CGG | 0.653896 | 6_4:+58192646 | Msa0991860:CDS |
| GCAATGTGTGCTGATTTGCA+TGG | 0.668568 | 6_4:-58192938 | None:intergenic |
| GGAGACAGAGAAATTCAACA+AGG | 0.740179 | 6_4:-58190179 | None:intergenic |
| GGGTTGTAGATATTACACAA+AGG | 0.751034 | 6_4:+58193363 | Msa0991860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAATATTTATGAATGAA+AGG | - | chr6_4:58190203-58190222 | None:intergenic | 10.0% |
| !!! | AATATTCATAATTTTTTTTC+TGG | - | chr6_4:58194882-58194901 | None:intergenic | 10.0% |
| !!! | TTATGAAATTTATATTTTCT+TGG | + | chr6_4:58195385-58195404 | Msa0991860:intron | 10.0% |
| !! | TTGAATAAAGAAGAAATTAA+TGG | - | chr6_4:58190241-58190260 | None:intergenic | 15.0% |
| !! | TTGAACTAATATCTATATAT+AGG | + | chr6_4:58191004-58191023 | Msa0991860:intron | 15.0% |
| !! | TACTATTAATAATACCAATT+TGG | - | chr6_4:58193888-58193907 | None:intergenic | 15.0% |
| !!! | GTAAAAATATTTTTTGACTA+CGG | - | chr6_4:58194450-58194469 | None:intergenic | 15.0% |
| !!! | TAGTCAAAAAATATTTTTAC+TGG | + | chr6_4:58194450-58194469 | Msa0991860:intron | 15.0% |
| !!! | AGTCAAAAAATATTTTTACT+GGG | + | chr6_4:58194451-58194470 | Msa0991860:intron | 15.0% |
| !!! | GAGATTATTTTTTTTACAAA+TGG | + | chr6_4:58194989-58195008 | Msa0991860:intron | 15.0% |
| !! | ATTTATAACAAAAAATTACG+AGG | - | chr6_4:58195670-58195689 | None:intergenic | 15.0% |
| !!! | ATATTATAATCTACCCTTTT+CGG | + | chr6_4:58190214-58190233 | Msa0991860:five_prime_UTR | 20.0% |
| !!! | GTTTTTGTTTGAGAATTTTA+AGG | + | chr6_4:58190432-58190451 | Msa0991860:intron | 20.0% |
| !!! | TTTTCATATCAACTACTAAA+AGG | - | chr6_4:58191522-58191541 | None:intergenic | 20.0% |
| !!! | AGTAGTTGATATGAAAAATT+TGG | + | chr6_4:58191525-58191544 | Msa0991860:intron | 20.0% |
| !! | TCAATTCATGACTTAAAAAT+AGG | + | chr6_4:58192497-58192516 | Msa0991860:intron | 20.0% |
| !! | TTTGTTTATTTCATGAAATG+TGG | + | chr6_4:58192822-58192841 | Msa0991860:intron | 20.0% |
| !! | CAAAATCTAAATTAAACCAT+AGG | - | chr6_4:58192855-58192874 | None:intergenic | 20.0% |
| !! | ACATAAAAAAATACAACATC+AGG | - | chr6_4:58193216-58193235 | None:intergenic | 20.0% |
| !!! | AACTTATTTAAAACCACATA+GGG | - | chr6_4:58193856-58193875 | None:intergenic | 20.0% |
| !!! | AAACTTATTTAAAACCACAT+AGG | - | chr6_4:58193857-58193876 | None:intergenic | 20.0% |
| !! | AAGTTTATGTTTATCCAAAT+TGG | + | chr6_4:58193871-58193890 | Msa0991860:intron | 20.0% |
| !!! | CTTATTTTGAACATATCTAT+TGG | + | chr6_4:58193938-58193957 | Msa0991860:intron | 20.0% |
| !! | AATGAGAAAATACAAAGATA+AGG | - | chr6_4:58194384-58194403 | None:intergenic | 20.0% |
| !!! | GTCAAAAAATATTTTTACTG+GGG | + | chr6_4:58194452-58194471 | Msa0991860:intron | 20.0% |
| !!! | AAAAATACTCTTTTTTTACG+AGG | - | chr6_4:58194912-58194931 | None:intergenic | 20.0% |
| !! | TAAATTATCATTTGCTTTCA+AGG | + | chr6_4:58195015-58195034 | Msa0991860:intron | 20.0% |
| !! | AAATTATCATTTGCTTTCAA+GGG | + | chr6_4:58195016-58195035 | Msa0991860:intron | 20.0% |
| !!! | ATTAACCTTTTAGTTTTTGA+AGG | + | chr6_4:58195735-58195754 | Msa0991860:three_prime_UTR | 20.0% |
| ! | TTAATAAAAAACAATGGAGG+TGG | - | chr6_4:58190339-58190358 | None:intergenic | 25.0% |
| ! | CCATTAATAAAAAACAATGG+AGG | - | chr6_4:58190342-58190361 | None:intergenic | 25.0% |
| !!! | CCTCCATTGTTTTTTATTAA+TGG | + | chr6_4:58190339-58190358 | Msa0991860:exon | 25.0% |
| ! | GAGCCATTAATAAAAAACAA+TGG | - | chr6_4:58190345-58190364 | None:intergenic | 25.0% |
| !!! | AGGATTTTATTTACCTATGT+TGG | + | chr6_4:58190452-58190471 | Msa0991860:intron | 25.0% |
| !!! | TAAATTTCTAGTTCCAACAT+AGG | - | chr6_4:58190468-58190487 | None:intergenic | 25.0% |
| ! | GAGAATAAGCAAAAACAAAT+GGG | + | chr6_4:58190705-58190724 | Msa0991860:intron | 25.0% |
| ! | ATCAACATTAGTTAGTTGAT+AGG | + | chr6_4:58190878-58190897 | Msa0991860:intron | 25.0% |
| ! | TTATGAATCATGGAATCATA+GGG | - | chr6_4:58191098-58191117 | None:intergenic | 25.0% |
| ! | ATTATGAATCATGGAATCAT+AGG | - | chr6_4:58191099-58191118 | None:intergenic | 25.0% |
| ! | TGATTGAATATACATTGATC+TGG | + | chr6_4:58191433-58191452 | Msa0991860:intron | 25.0% |
| !!! | AAAATTTGGTTCGATTTTAG+AGG | + | chr6_4:58191539-58191558 | Msa0991860:intron | 25.0% |
| ! | TCAAGATCATATAAAGTAAG+TGG | - | chr6_4:58191647-58191666 | None:intergenic | 25.0% |
| ! | ACTTTATATGATCTTGACTA+CGG | + | chr6_4:58191650-58191669 | Msa0991860:intron | 25.0% |
| !! | TTTAGGATTGAAATCGTATA+TGG | + | chr6_4:58191909-58191928 | Msa0991860:intron | 25.0% |
| ! | TTGTATACCATTGTTTATAC+TGG | + | chr6_4:58191982-58192001 | Msa0991860:intron | 25.0% |
| ! | AAACATGAACAAAATCTTGA+AGG | - | chr6_4:58192322-58192341 | None:intergenic | 25.0% |
| ! | ATGACTTAAAAATAGGTCTT+CGG | + | chr6_4:58192504-58192523 | Msa0991860:intron | 25.0% |
| ! | TTCCTTATTATCTCTGTATT+AGG | + | chr6_4:58192572-58192591 | Msa0991860:intron | 25.0% |
| ! | AACCTAATACAGAGATAATA+AGG | - | chr6_4:58192577-58192596 | None:intergenic | 25.0% |
| ! | TTATTATCTCTGTATTAGGT+TGG | + | chr6_4:58192576-58192595 | Msa0991860:intron | 25.0% |
| !!! | ATTGTTCTGCTTTAGAATAT+CGG | - | chr6_4:58192628-58192647 | None:intergenic | 25.0% |
| !!! | GATGATAACATTGATTTTTC+AGG | + | chr6_4:58192874-58192893 | Msa0991860:intron | 25.0% |
| ! | TTAAACTAATTGAGCCATAA+TGG | - | chr6_4:58192910-58192929 | None:intergenic | 25.0% |
| !! | ATATGATCCGAATTTAAGAT+TGG | + | chr6_4:58193000-58193019 | Msa0991860:CDS | 25.0% |
| ! | CATAACACCAATCTTAAATT+CGG | - | chr6_4:58193010-58193029 | None:intergenic | 25.0% |
| ! | TTTCTTTACCTTAATGACAT+CGG | - | chr6_4:58193083-58193102 | None:intergenic | 25.0% |
| ! | AAAACAACATCATCATCATT+AGG | - | chr6_4:58193289-58193308 | None:intergenic | 25.0% |
| ! | ATGCAAATAATTGATTGTCA+TGG | + | chr6_4:58193509-58193528 | Msa0991860:intron | 25.0% |
| !! | ACTTATTTAAAACCACATAG+GGG | - | chr6_4:58193855-58193874 | None:intergenic | 25.0% |
| !! | TTTTTCTTCATAAACTCTGT+AGG | + | chr6_4:58194018-58194037 | Msa0991860:intron | 25.0% |
| ! | AAACAAACCTGAAAAATACT+CGG | - | chr6_4:58194321-58194340 | None:intergenic | 25.0% |
| ! | AAGCTAATTCACCTTTATAT+CGG | + | chr6_4:58194672-58194691 | Msa0991860:intron | 25.0% |
| !!! | TCATAATTTTTTTTCTGGAC+CGG | - | chr6_4:58194877-58194896 | None:intergenic | 25.0% |
| ! | GATGAAGGAAATAAAGATAA+AGG | + | chr6_4:58194955-58194974 | Msa0991860:intron | 25.0% |
| ! | AAAGATAAAGGAACTGAAAT+TGG | + | chr6_4:58194967-58194986 | Msa0991860:intron | 25.0% |
| !! | GAAATTTATATTTTCTTGGC+AGG | + | chr6_4:58195389-58195408 | Msa0991860:intron | 25.0% |
| !! | TTGTATTTTGCAAATGTATG+TGG | + | chr6_4:58195435-58195454 | Msa0991860:CDS | 25.0% |
| ! | AGAAATTAATGGACCGAAAA+GGG | - | chr6_4:58190230-58190249 | None:intergenic | 30.0% |
| ! | AAGAAATTAATGGACCGAAA+AGG | - | chr6_4:58190231-58190250 | None:intergenic | 30.0% |
| AAAGAAGAAAAAACCTGATG+GGG | - | chr6_4:58190377-58190396 | None:intergenic | 30.0% | |
| GAAAGAAGAAAAAACCTGAT+GGG | - | chr6_4:58190378-58190397 | None:intergenic | 30.0% | |
| AGAAAGAAGAAAAAACCTGA+TGG | - | chr6_4:58190379-58190398 | None:intergenic | 30.0% | |
| AATACAAGTTAATTCACGCT+CGG | - | chr6_4:58190626-58190645 | None:intergenic | 30.0% | |
| CGAGAATAAGCAAAAACAAA+TGG | + | chr6_4:58190704-58190723 | Msa0991860:intron | 30.0% | |
| !! | AAGTACTGAACATAAACAAC+TGG | + | chr6_4:58190931-58190950 | Msa0991860:intron | 30.0% |
| TTGTGGTCTATTATGAATCA+TGG | - | chr6_4:58191108-58191127 | None:intergenic | 30.0% | |
| ATCAACGTAAAGTGTATAAG+TGG | - | chr6_4:58191417-58191436 | None:intergenic | 30.0% | |
| GACTATCAATGACTAAAGAA+AGG | - | chr6_4:58191479-58191498 | None:intergenic | 30.0% | |
| TTAACAGCTTATATGAGAAC+AGG | + | chr6_4:58191752-58191771 | Msa0991860:intron | 30.0% | |
| CTTATATGAGAACAGGTTTA+TGG | + | chr6_4:58191759-58191778 | Msa0991860:intron | 30.0% | |
| ACGATTTCAATCCTAAATGT+TGG | - | chr6_4:58191906-58191925 | None:intergenic | 30.0% | |
| GCTTTAACCAGTATAAACAA+TGG | - | chr6_4:58191992-58192011 | None:intergenic | 30.0% | |
| TCTTAGAAAAGAAGACCATA+AGG | + | chr6_4:58192041-58192060 | Msa0991860:CDS | 30.0% | |
| TGCTGTTGGTATATCTAAAT+TGG | + | chr6_4:58192188-58192207 | Msa0991860:CDS | 30.0% | |
| GCTGTTGGTATATCTAAATT+GGG | + | chr6_4:58192189-58192208 | Msa0991860:CDS | 30.0% | |
| TGATAGAGATCTCTTAAAGA+AGG | + | chr6_4:58192785-58192804 | Msa0991860:CDS | 30.0% | |
| !! | CGAATTTAAGATTGGTGTTA+TGG | + | chr6_4:58193008-58193027 | Msa0991860:CDS | 30.0% |
| GAATGGCATAATGAGTATAT+GGG | + | chr6_4:58193051-58193070 | Msa0991860:CDS | 30.0% | |
| AAATTATACACACGATGTAG+TGG | + | chr6_4:58193100-58193119 | Msa0991860:intron | 30.0% | |
| TATGTATGTACAGATTAGTG+AGG | + | chr6_4:58193231-58193250 | Msa0991860:intron | 30.0% | |
| !! | GAGATTACATTTTTGACTGA+AGG | + | chr6_4:58193256-58193275 | Msa0991860:CDS | 30.0% |
| AAACTCTTAATTGTTACCGA+AGG | + | chr6_4:58193334-58193353 | Msa0991860:CDS | 30.0% | |
| CTTTAGATTGAAGTTGTGAT+CGG | - | chr6_4:58193578-58193597 | None:intergenic | 30.0% | |
| TCAGATAACTAATAGTAGGA+CGG | - | chr6_4:58193604-58193623 | None:intergenic | 30.0% | |
| GAGATCAGATAACTAATAGT+AGG | - | chr6_4:58193608-58193627 | None:intergenic | 30.0% | |
| ! | AATTTAACTTCCCCTGAAAT+AGG | - | chr6_4:58193729-58193748 | None:intergenic | 30.0% |
| TAATATTACTTTCCCCTATG+TGG | + | chr6_4:58193840-58193859 | Msa0991860:intron | 30.0% | |
| TTAAGCTATCTATCCAAACA+TGG | + | chr6_4:58194161-58194180 | Msa0991860:intron | 30.0% | |
| AATTTGGCACCACAATTATT+AGG | - | chr6_4:58194187-58194206 | None:intergenic | 30.0% | |
| AACAAACCTGAAAAATACTC+GGG | - | chr6_4:58194320-58194339 | None:intergenic | 30.0% | |
| ATATAATCACCTCTTGATGA+AGG | + | chr6_4:58194940-58194959 | Msa0991860:intron | 30.0% | |
| ! | TCTTTATTTCCTTCATCAAG+AGG | - | chr6_4:58194952-58194971 | None:intergenic | 30.0% |
| ! | AACTTTGGAAGGAAAAAAAC+TGG | - | chr6_4:58195636-58195655 | None:intergenic | 30.0% |
| AGACAAAGTTTGCATCTTTG+TGG | + | chr6_4:58190488-58190507 | Msa0991860:intron | 35.0% | |
| GACAAAGTTTGCATCTTTGT+GGG | + | chr6_4:58190489-58190508 | Msa0991860:intron | 35.0% | |
| ACAAAGTTTGCATCTTTGTG+GGG | + | chr6_4:58190490-58190509 | Msa0991860:intron | 35.0% | |
| !!! | TTTGTGGGGTTTTGGATTAT+GGG | + | chr6_4:58190504-58190523 | Msa0991860:intron | 35.0% |
| GGGAATGAGCAATTCTAAAT+GGG | - | chr6_4:58190592-58190611 | None:intergenic | 35.0% | |
| !!! | TGTGTCCTTTTTTTCCAGAT+TGG | + | chr6_4:58190783-58190802 | Msa0991860:intron | 35.0% |
| !!! | GTGTCCTTTTTTTCCAGATT+GGG | + | chr6_4:58190784-58190803 | Msa0991860:intron | 35.0% |
| AGCTAGGATTATGCGTTATT+GGG | - | chr6_4:58190829-58190848 | None:intergenic | 35.0% | |
| TAGCTAGGATTATGCGTTAT+TGG | - | chr6_4:58190830-58190849 | None:intergenic | 35.0% | |
| GCATAATCCTAGCTAGATTA+GGG | + | chr6_4:58190835-58190854 | Msa0991860:intron | 35.0% | |
| ATATAGTCCCTAATCTAGCT+AGG | - | chr6_4:58190845-58190864 | None:intergenic | 35.0% | |
| GTTAACTAGAGTTAGTAGCT+TGG | + | chr6_4:58190900-58190919 | Msa0991860:intron | 35.0% | |
| AACAACTGGAGTTAGTTGAT+TGG | + | chr6_4:58190945-58190964 | Msa0991860:intron | 35.0% | |
| AACAACAAATGCGAGATCAT+TGG | - | chr6_4:58191197-58191216 | None:intergenic | 35.0% | |
| !! | AATGATCTCGCATTTGTTGT+TGG | + | chr6_4:58191196-58191215 | Msa0991860:intron | 35.0% |
| !! | ATGATCTCGCATTTGTTGTT+GGG | + | chr6_4:58191197-58191216 | Msa0991860:intron | 35.0% |
| !! | CATTTGTTGTTGGGTTTCAT+GGG | + | chr6_4:58191206-58191225 | Msa0991860:intron | 35.0% |
| ATATGAGCTCCCCTATATAA+AGG | + | chr6_4:58191238-58191257 | Msa0991860:intron | 35.0% | |
| TACGCAACCACCTTTATATA+GGG | - | chr6_4:58191251-58191270 | None:intergenic | 35.0% | |
| !! | TTTGGTTCGATTTTAGAGGA+CGG | + | chr6_4:58191543-58191562 | Msa0991860:intron | 35.0% |
| ACACATCATGTAGTTACACA+AGG | + | chr6_4:58191608-58191627 | Msa0991860:intron | 35.0% | |
| TGAACTACTGATGCATTTCA+TGG | + | chr6_4:58191720-58191739 | Msa0991860:intron | 35.0% | |
| ATATGAGAACAGGTTTATGG+TGG | + | chr6_4:58191762-58191781 | Msa0991860:intron | 35.0% | |
| TAACCTATGAAACACTGACA+CGG | - | chr6_4:58191944-58191963 | None:intergenic | 35.0% | |
| AGATATACCAACAGCAACAT+TGG | - | chr6_4:58192184-58192203 | None:intergenic | 35.0% | |
| GTTGGTATATCTAAATTGGG+AGG | + | chr6_4:58192192-58192211 | Msa0991860:CDS | 35.0% | |
| !! | TTCATCTGCTTTTATAGGCA+AGG | + | chr6_4:58192215-58192234 | Msa0991860:CDS | 35.0% |
| AGACGAATTTGGTTACATGT+TGG | + | chr6_4:58192602-58192621 | Msa0991860:intron | 35.0% | |
| CAGAACAATGTTGATACTTC+TGG | + | chr6_4:58192639-58192658 | Msa0991860:intron | 35.0% | |
| !! | ATGTTGATACTTCTGGAATG+CGG | + | chr6_4:58192646-58192665 | Msa0991860:CDS | 35.0% |
| TTTGTCACACTTAGATCTGA+CGG | + | chr6_4:58192699-58192718 | Msa0991860:CDS | 35.0% | |
| ! | CAGGCTAGAATTTTCCATTA+TGG | + | chr6_4:58192893-58192912 | Msa0991860:intron | 35.0% |
| ATGAAGATTGCCAAAAGTTC+TGG | + | chr6_4:58192965-58192984 | Msa0991860:CDS | 35.0% | |
| ATTCGGATCATATGAGAGAA+TGG | - | chr6_4:58192993-58193012 | None:intergenic | 35.0% | |
| GGAATGGCATAATGAGTATA+TGG | + | chr6_4:58193050-58193069 | Msa0991860:CDS | 35.0% | |
| ! | GCATACTGATTAAACTCACT+AGG | - | chr6_4:58193151-58193170 | None:intergenic | 35.0% |
| TTAATCAGTATGCATTGCCA+CGG | + | chr6_4:58193158-58193177 | Msa0991860:intron | 35.0% | |
| !!! | TGCTGTAATTTGTTTTACCG+TGG | - | chr6_4:58193178-58193197 | None:intergenic | 35.0% |
| AATTGTTACCGAAGGTTCTA+AGG | + | chr6_4:58193342-58193361 | Msa0991860:CDS | 35.0% | |
| ! | ATTGTTACCGAAGGTTCTAA+GGG | + | chr6_4:58193343-58193362 | Msa0991860:CDS | 35.0% |
| GGGTTGTAGATATTACACAA+AGG | + | chr6_4:58193363-58193382 | Msa0991860:CDS | 35.0% | |
| TATGATGTCACATGTCTTGT+TGG | + | chr6_4:58193409-58193428 | Msa0991860:intron | 35.0% | |
| !! | AAACTATTACTGATTCGACG+TGG | - | chr6_4:58193483-58193502 | None:intergenic | 35.0% |
| GTTATCTGATCTCAAAACAG+TGG | + | chr6_4:58193615-58193634 | Msa0991860:intron | 35.0% | |
| CGTACGAAAAAGTCCTTATA+AGG | + | chr6_4:58193694-58193713 | Msa0991860:intron | 35.0% | |
| TAGGCATCTACAACCTTATA+AGG | - | chr6_4:58193710-58193729 | None:intergenic | 35.0% | |
| TAAACTCTGTAGGATAGCTT+AGG | + | chr6_4:58194028-58194047 | Msa0991860:intron | 35.0% | |
| CACAATTATTAGGCCATGTT+TGG | - | chr6_4:58194177-58194196 | None:intergenic | 35.0% | |
| CAAACATGGCCTAATAATTG+TGG | + | chr6_4:58194175-58194194 | Msa0991860:intron | 35.0% | |
| GAAATTCCTGCACAGAAATT+TGG | - | chr6_4:58194203-58194222 | None:intergenic | 35.0% | |
| GGTTTAAAAACTGATCTGTC+CGG | + | chr6_4:58194473-58194492 | Msa0991860:intron | 35.0% | |
| ! | ATGGAATGTGTGAAAAGTGT+GGG | + | chr6_4:58194624-58194643 | Msa0991860:intron | 35.0% |
| GGAAAAGTGAATCATACCTT+GGG | + | chr6_4:58194645-58194664 | Msa0991860:intron | 35.0% | |
| GAAAAGTGAATCATACCTTG+GGG | + | chr6_4:58194646-58194665 | Msa0991860:intron | 35.0% | |
| AAAAGTGAATCATACCTTGG+GGG | + | chr6_4:58194647-58194666 | Msa0991860:intron | 35.0% | |
| !!! | TACTCTTTTTTTACGAGGAC+AGG | - | chr6_4:58194907-58194926 | None:intergenic | 35.0% |
| ! | ACGAGTAAAAGCGTATCATT+TGG | + | chr6_4:58195078-58195097 | Msa0991860:intron | 35.0% |
| AACGTATGCAAGCATAAATC+AGG | + | chr6_4:58195230-58195249 | Msa0991860:intron | 35.0% | |
| !!! | ATGTGTCGTTTTGCTGTATA+AGG | + | chr6_4:58195302-58195321 | Msa0991860:intron | 35.0% |
| !!! | TGTGTCGTTTTGCTGTATAA+GGG | + | chr6_4:58195303-58195322 | Msa0991860:intron | 35.0% |
| ACCTCTTTCTGTAACTGTTA+TGG | - | chr6_4:58195463-58195482 | None:intergenic | 35.0% | |
| AATTCCTTCACTTCCTACAA+AGG | + | chr6_4:58195485-58195504 | Msa0991860:CDS | 35.0% | |
| !!! | CCAAGGATTTTAACTTTGGA+AGG | - | chr6_4:58195647-58195666 | None:intergenic | 35.0% |
| CCTTCCAAAGTTAAAATCCT+TGG | + | chr6_4:58195644-58195663 | Msa0991860:intron | 35.0% | |
| AACAAAAAATTACGAGGCCA+AGG | - | chr6_4:58195664-58195683 | None:intergenic | 35.0% | |
| GAGCACCTTCAAAAACTAAA+AGG | - | chr6_4:58195743-58195762 | None:intergenic | 35.0% | |
| GGAGACAGAGAAATTCAACA+AGG | - | chr6_4:58190182-58190201 | None:intergenic | 40.0% | |
| ! | TTTGCATCTTTGTGGGGTTT+TGG | + | chr6_4:58190496-58190515 | Msa0991860:intron | 40.0% |
| !!! | CTTTGTGGGGTTTTGGATTA+TGG | + | chr6_4:58190503-58190522 | Msa0991860:intron | 40.0% |
| GGGGAATGAGCAATTCTAAA+TGG | - | chr6_4:58190593-58190612 | None:intergenic | 40.0% | |
| !!! | TTCACGCTCGGCTTTTTTTA+CGG | - | chr6_4:58190614-58190633 | None:intergenic | 40.0% |
| CGCATAATCCTAGCTAGATT+AGG | + | chr6_4:58190834-58190853 | Msa0991860:intron | 40.0% | |
| ! | AAAGGTCATCTCTGTCGATT+AGG | + | chr6_4:58191155-58191174 | Msa0991860:intron | 40.0% |
| !! | GCATTTGTTGTTGGGTTTCA+TGG | + | chr6_4:58191205-58191224 | Msa0991860:intron | 40.0% |
| ACGCAACCACCTTTATATAG+GGG | - | chr6_4:58191250-58191269 | None:intergenic | 40.0% | |
| GTACGCAACCACCTTTATAT+AGG | - | chr6_4:58191252-58191271 | None:intergenic | 40.0% | |
| GATAGAAGAGTCAGTGAAAG+TGG | - | chr6_4:58191304-58191323 | None:intergenic | 40.0% | |
| GTTCACTGAAGAGGAGAAAT+CGG | - | chr6_4:58191368-58191387 | None:intergenic | 40.0% | |
| TTTCTCCTCTTCAGTGAACT+AGG | + | chr6_4:58191369-58191388 | Msa0991860:intron | 40.0% | |
| ! | TAAGTGGTTTTCCAATGCGA+TGG | - | chr6_4:58191401-58191420 | None:intergenic | 40.0% |
| AAAGAAAGGCAAACGTGATC+TGG | - | chr6_4:58191465-58191484 | None:intergenic | 40.0% | |
| TTCATAGTGTCGTCAGTAAG+AGG | - | chr6_4:58191834-58191853 | None:intergenic | 40.0% | |
| ATACCGTGTCAGTGTTTCAT+AGG | + | chr6_4:58191938-58191957 | Msa0991860:intron | 40.0% | |
| ! | CCAGTGAACTTGTTTCCTTA+TGG | - | chr6_4:58192059-58192078 | None:intergenic | 40.0% |
| CCATAAGGAAACAAGTTCAC+TGG | + | chr6_4:58192056-58192075 | Msa0991860:CDS | 40.0% | |
| ! | AGTTCACTGGTTGTTTCCTT+TGG | + | chr6_4:58192069-58192088 | Msa0991860:CDS | 40.0% |
| ! | GTTCACTGGTTGTTTCCTTT+GGG | + | chr6_4:58192070-58192089 | Msa0991860:CDS | 40.0% |
| ! | TTCACTGGTTGTTTCCTTTG+GGG | + | chr6_4:58192071-58192090 | Msa0991860:CDS | 40.0% |
| GTCTATCAACATTTCCCCAA+AGG | - | chr6_4:58192088-58192107 | None:intergenic | 40.0% | |
| ATAGACTTTGTGCCAACTGT+GGG | + | chr6_4:58192102-58192121 | Msa0991860:CDS | 40.0% | |
| !! | GGAGGTTCATCTGCTTTTAT+AGG | + | chr6_4:58192210-58192229 | Msa0991860:CDS | 40.0% |
| ! | TGAAGAAGCATATCAGCACT+TGG | - | chr6_4:58192753-58192772 | None:intergenic | 40.0% |
| GAAATGTGGTTCAAGACCTA+TGG | + | chr6_4:58192836-58192855 | Msa0991860:intron | 40.0% | |
| ! | GAGAATGGAACCAGAACTTT+TGG | - | chr6_4:58192978-58192997 | None:intergenic | 40.0% |
| GTATGTACAGATTAGTGAGG+AGG | + | chr6_4:58193234-58193253 | Msa0991860:intron | 40.0% | |
| TCTACAACCCTTAGAACCTT+CGG | - | chr6_4:58193353-58193372 | None:intergenic | 40.0% | |
| GCTAATCCAAACAACACCTT+AGG | - | chr6_4:58193643-58193662 | None:intergenic | 40.0% | |
| AGGTTGTAGATGCCTATTTC+AGG | + | chr6_4:58193714-58193733 | Msa0991860:intron | 40.0% | |
| GGTTGTAGATGCCTATTTCA+GGG | + | chr6_4:58193715-58193734 | Msa0991860:intron | 40.0% | |
| GTTGTAGATGCCTATTTCAG+GGG | + | chr6_4:58193716-58193735 | Msa0991860:intron | 40.0% | |
| ATTTCTGTGCAGGAATTTCG+AGG | + | chr6_4:58194204-58194223 | Msa0991860:intron | 40.0% | |
| GTTAAACCTGTTGACACAAC+TGG | + | chr6_4:58194246-58194265 | Msa0991860:intron | 40.0% | |
| ! | TTCTGACCCGAGTATTTTTC+AGG | + | chr6_4:58194311-58194330 | Msa0991860:intron | 40.0% |
| AGTCAGTATGGGAAATGAGA+TGG | + | chr6_4:58194605-58194624 | Msa0991860:intron | 40.0% | |
| GATGGAATGTGTGAAAAGTG+TGG | + | chr6_4:58194623-58194642 | Msa0991860:intron | 40.0% | |
| GGGAAAAGTGAATCATACCT+TGG | + | chr6_4:58194644-58194663 | Msa0991860:intron | 40.0% | |
| GCATACGTTCATGTACAAGT+GGG | - | chr6_4:58195219-58195238 | None:intergenic | 40.0% | |
| TGCATACGTTCATGTACAAG+TGG | - | chr6_4:58195220-58195239 | None:intergenic | 40.0% | |
| GCCATAACAGTTACAGAAAG+AGG | + | chr6_4:58195459-58195478 | Msa0991860:CDS | 40.0% | |
| TGTGAAACAGCTTCCTTTGT+AGG | - | chr6_4:58195501-58195520 | None:intergenic | 40.0% | |
| !!! | GAGGCCAAGGATTTTAACTT+TGG | - | chr6_4:58195651-58195670 | None:intergenic | 40.0% |
| !!! | TCACGCTCGGCTTTTTTTAC+GGG | - | chr6_4:58190613-58190632 | None:intergenic | 45.0% |
| CAGCTTGAGTTAACTCACGT+AGG | + | chr6_4:58190680-58190699 | Msa0991860:intron | 45.0% | |
| GTGGCCCAATCTGGAAAAAA+AGG | - | chr6_4:58190791-58190810 | None:intergenic | 45.0% | |
| ACATGTATTGTGGCCCAATC+TGG | - | chr6_4:58190800-58190819 | None:intergenic | 45.0% | |
| AGGATTATGCGTTATTGGGC+CGG | - | chr6_4:58190825-58190844 | None:intergenic | 45.0% | |
| ! | GACAGAGATGACCTTTTGTG+TGG | - | chr6_4:58191151-58191170 | None:intergenic | 45.0% |
| ! | TCTGTCGATTAGGACTGTTG+AGG | + | chr6_4:58191165-58191184 | Msa0991860:intron | 45.0% |
| GTTGTTGGGTTTCATGGGAA+CGG | + | chr6_4:58191211-58191230 | Msa0991860:intron | 45.0% | |
| TGAGCTCCCCTATATAAAGG+TGG | + | chr6_4:58191241-58191260 | Msa0991860:intron | 45.0% | |
| ! | TGCGTAACTTGTCCTTGCAA+TGG | - | chr6_4:58191274-58191293 | None:intergenic | 45.0% |
| GCTATCCTAGTTCACTGAAG+AGG | - | chr6_4:58191377-58191396 | None:intergenic | 45.0% | |
| !! | GTTCGATTTTAGAGGACGGT+GGG | + | chr6_4:58191547-58191566 | Msa0991860:intron | 45.0% |
| !! | TTCGATTTTAGAGGACGGTG+GGG | + | chr6_4:58191548-58191567 | Msa0991860:intron | 45.0% |
| ! | CGCATTTTTGCCACTAATGC+AGG | - | chr6_4:58191678-58191697 | None:intergenic | 45.0% |
| GTGGCAAAAATGCGAGTATC+TGG | + | chr6_4:58191684-58191703 | Msa0991860:intron | 45.0% | |
| TACTAGCGACGCCAACATTT+AGG | + | chr6_4:58191892-58191911 | Msa0991860:intron | 45.0% | |
| GATAGACTTTGTGCCAACTG+TGG | + | chr6_4:58192101-58192120 | Msa0991860:CDS | 45.0% | |
| CCAGGAGATTTCTTGAAAGC+CGG | - | chr6_4:58192150-58192169 | None:intergenic | 45.0% | |
| GCTTTCAAGAAATCTCCTGG+TGG | + | chr6_4:58192150-58192169 | Msa0991860:CDS | 45.0% | |
| ATACCAACAGCAACATTGGC+AGG | - | chr6_4:58192180-58192199 | None:intergenic | 45.0% | |
| ! | TAGGTTGGAGCAGACGAATT+TGG | + | chr6_4:58192591-58192610 | Msa0991860:intron | 45.0% |
| !!! | AGCGCGAGTTCTTGTTTTTC+CGG | + | chr6_4:58192724-58192743 | Msa0991860:CDS | 45.0% |
| GCATATCAGCACTTGGATTC+CGG | - | chr6_4:58192746-58192765 | None:intergenic | 45.0% | |
| !! | GCAATGTGTGCTGATTTGCA+TGG | - | chr6_4:58192941-58192960 | None:intergenic | 45.0% |
| GGATCAAGCCGATGTCATTA+AGG | + | chr6_4:58193072-58193091 | Msa0991860:CDS | 45.0% | |
| TCCAAGCTCATTGTCTCTGT+CGG | - | chr6_4:58193450-58193469 | None:intergenic | 45.0% | |
| TGGATGTGTCAGTGTTGTGT+CGG | + | chr6_4:58193529-58193548 | Msa0991860:intron | 45.0% | |
| GATTGAAGTTGTGATCGGTG+CGG | - | chr6_4:58193573-58193592 | None:intergenic | 45.0% | |
| TCTCAAAACAGTGGTGCCTA+AGG | + | chr6_4:58193624-58193643 | Msa0991860:intron | 45.0% | |
| ! | GCTGGTGATGCATTTGTTAG+TGG | + | chr6_4:58194270-58194289 | Msa0991860:intron | 45.0% |
| AAAAACTGATCTGTCCGGTG+AGG | + | chr6_4:58194478-58194497 | Msa0991860:intron | 45.0% | |
| !! | CGAAAAGTGCTTTGGTACAG+TGG | + | chr6_4:58194522-58194541 | Msa0991860:intron | 45.0% |
| TCCAACGCTCAAGTCAGTAT+GGG | + | chr6_4:58194594-58194613 | Msa0991860:intron | 45.0% | |
| TCTCACACACGCCGATATAA+AGG | - | chr6_4:58194686-58194705 | None:intergenic | 45.0% | |
| GCACATCATCATGTACCCAT+TGG | + | chr6_4:58194728-58194747 | Msa0991860:intron | 45.0% | |
| CATCATCATGTACCCATTGG+AGG | + | chr6_4:58194731-58194750 | Msa0991860:intron | 45.0% | |
| ACCAAACATCCACCATACCA+AGG | - | chr6_4:58194825-58194844 | None:intergenic | 45.0% | |
| GCTTCCTTTGTAGGAAGTGA+AGG | - | chr6_4:58195492-58195511 | None:intergenic | 45.0% | |
| GCTCACTCTAATACCCCATC+AGG | + | chr6_4:58190361-58190380 | Msa0991860:CDS | 50.0% | |
| !!! | CACGCTCGGCTTTTTTTACG+GGG | - | chr6_4:58190612-58190631 | None:intergenic | 50.0% |
| TGGGCCACAATACATGTCAC+CGG | + | chr6_4:58190803-58190822 | Msa0991860:intron | 50.0% | |
| ! | AGCGCACGAGAGATCTTTTG+TGG | - | chr6_4:58191125-58191144 | None:intergenic | 50.0% |
| CAAAAGATCTCTCGTGCGCT+TGG | + | chr6_4:58191125-58191144 | Msa0991860:intron | 50.0% | |
| TGAAGAGGAGAAATCGGCAG+AGG | - | chr6_4:58191362-58191381 | None:intergenic | 50.0% | |
| CTAGGATAGCTCCATCGCAT+TGG | + | chr6_4:58191387-58191406 | Msa0991860:intron | 50.0% | |
| !! | GGTTCGATTTTAGAGGACGG+TGG | + | chr6_4:58191546-58191565 | Msa0991860:intron | 50.0% |
| GACTACGGATCCTGCATTAG+TGG | + | chr6_4:58191665-58191684 | Msa0991860:intron | 50.0% | |
| TTTCTTGAAAGCCGGTGCCT+CGG | - | chr6_4:58192142-58192161 | None:intergenic | 50.0% | |
| CCGGCTTTCAAGAAATCTCC+TGG | + | chr6_4:58192147-58192166 | Msa0991860:CDS | 50.0% | |
| ACCGACAGAGACAATGAGCT+TGG | + | chr6_4:58193446-58193465 | Msa0991860:intron | 50.0% | |
| !! | GTGGTGCCTAAGGTGTTGTT+TGG | + | chr6_4:58193634-58193653 | Msa0991860:intron | 50.0% |
| ! | GTGGTGCCAAATTTCTGTGC+AGG | + | chr6_4:58194194-58194213 | Msa0991860:intron | 50.0% |
| TGTGCAGGAATTTCGAGGCA+GGG | + | chr6_4:58194209-58194228 | Msa0991860:intron | 50.0% | |
| TGAGGAACTGATGGAGGCAA+CGG | + | chr6_4:58194496-58194515 | Msa0991860:intron | 50.0% | |
| !! | AACGGTGGCGAAAAGTGCTT+TGG | + | chr6_4:58194514-58194533 | Msa0991860:intron | 50.0% |
| ACAGTGGCGATGAGTCTTAG+CGG | + | chr6_4:58194538-58194557 | Msa0991860:intron | 50.0% | |
| CTCCAACGCTCAAGTCAGTA+TGG | + | chr6_4:58194593-58194612 | Msa0991860:intron | 50.0% | |
| !! | TCCCATACTGACTTGAGCGT+TGG | - | chr6_4:58194598-58194617 | None:intergenic | 50.0% |
| ! | GTGAATTAGCTTCACCCCCA+AGG | - | chr6_4:58194664-58194683 | None:intergenic | 50.0% |
| GTGTGTGAGAATAACCGTCC+CGG | + | chr6_4:58194696-58194715 | Msa0991860:intron | 50.0% | |
| ATGATGTGCCACATCTCACC+GGG | - | chr6_4:58194717-58194736 | None:intergenic | 50.0% | |
| GATGATGTGCCACATCTCAC+CGG | - | chr6_4:58194718-58194737 | None:intergenic | 50.0% | |
| !! | GCCTTGGTATGGTGGATGTT+TGG | + | chr6_4:58194821-58194840 | Msa0991860:intron | 50.0% |
| ! | GTCAGCGTTGAATTGCCTTC+TGG | + | chr6_4:58194851-58194870 | Msa0991860:intron | 50.0% |
| !!! | TTTTTTCTGGACCGGCCAGA+AGG | - | chr6_4:58194869-58194888 | None:intergenic | 50.0% |
| TGGGCCGGTGACATGTATTG+TGG | - | chr6_4:58190810-58190829 | None:intergenic | 55.0% | |
| GGTGGTTGCGTACCATTGCA+AGG | + | chr6_4:58191259-58191278 | Msa0991860:intron | 55.0% | |
| !! | CAGAGGCATTTCTCCACACG+GGG | - | chr6_4:58191345-58191364 | None:intergenic | 55.0% |
| !! | GCAGAGGCATTTCTCCACAC+GGG | - | chr6_4:58191346-58191365 | None:intergenic | 55.0% |
| !! | GGCAGAGGCATTTCTCCACA+CGG | - | chr6_4:58191347-58191366 | None:intergenic | 55.0% |
| GACTTTGTGCCAACTGTGGG+AGG | + | chr6_4:58192105-58192124 | Msa0991860:CDS | 55.0% | |
| GCTCCTGCCAATGTTGCTGT+TGG | + | chr6_4:58192174-58192193 | Msa0991860:CDS | 55.0% | |
| TATGCCATTCCGAGCAGCCT+CGG | - | chr6_4:58193041-58193060 | None:intergenic | 55.0% | |
| CTGTGCAGGAATTTCGAGGC+AGG | + | chr6_4:58194208-58194227 | Msa0991860:intron | 55.0% | |
| CAGGAATTTCGAGGCAGGGT+TGG | + | chr6_4:58194213-58194232 | Msa0991860:intron | 55.0% | |
| GAATTTCGAGGCAGGGTTGG+AGG | + | chr6_4:58194216-58194235 | Msa0991860:intron | 55.0% | |
| CCAGCACCAGTTGTGTCAAC+AGG | - | chr6_4:58194255-58194274 | None:intergenic | 55.0% | |
| CCTGTTGACACAACTGGTGC+TGG | + | chr6_4:58194252-58194271 | Msa0991860:intron | 55.0% | |
| TCTGTCCGGTGAGGAACTGA+TGG | + | chr6_4:58194487-58194506 | Msa0991860:intron | 55.0% | |
| TGCCTCCATCAGTTCCTCAC+CGG | - | chr6_4:58194495-58194514 | None:intergenic | 55.0% | |
| TGGCGATGAGTCTTAGCGGT+GGG | + | chr6_4:58194542-58194561 | Msa0991860:intron | 55.0% | |
| AGTCTTAGCGGTGGGACGAA+AGG | + | chr6_4:58194550-58194569 | Msa0991860:intron | 55.0% | |
| ATAACCGTCCCGGTGAGATG+TGG | + | chr6_4:58194706-58194725 | Msa0991860:intron | 55.0% | |
| AGATGCGTGCTTCAGTGAGG+TGG | + | chr6_4:58194778-58194797 | Msa0991860:intron | 55.0% | |
| TACCAAGGCGCATCGTCTGA+GGG | - | chr6_4:58194810-58194829 | None:intergenic | 55.0% | |
| ATACCAAGGCGCATCGTCTG+AGG | - | chr6_4:58194811-58194830 | None:intergenic | 55.0% | |
| TCAGACGATGCGCCTTGGTA+TGG | + | chr6_4:58194810-58194829 | Msa0991860:intron | 55.0% | |
| GGCAATTCAACGCTGACACG+TGG | - | chr6_4:58194848-58194867 | None:intergenic | 55.0% | |
| GCGTTGAATTGCCTTCTGGC+CGG | + | chr6_4:58194855-58194874 | Msa0991860:intron | 55.0% | |
| CGTGCGCTTGGCCACACAAA+AGG | + | chr6_4:58191137-58191156 | Msa0991860:intron | 60.0% | |
| CTCTGTAGAAGCTCCCCGTG+TGG | + | chr6_4:58191329-58191348 | Msa0991860:intron | 60.0% | |
| AGCGACACTCCTCCCACAGT+TGG | - | chr6_4:58192117-58192136 | None:intergenic | 60.0% | |
| ACATTGGCAGGAGCTCCACC+AGG | - | chr6_4:58192168-58192187 | None:intergenic | 60.0% | |
| GTCCGGTGAGGAACTGATGG+AGG | + | chr6_4:58194490-58194509 | Msa0991860:intron | 60.0% | |
| GGAACTGATGGAGGCAACGG+TGG | + | chr6_4:58194499-58194518 | Msa0991860:intron | 60.0% | |
| GTGGCGATGAGTCTTAGCGG+TGG | + | chr6_4:58194541-58194560 | Msa0991860:intron | 60.0% | |
| ! | TGGAGCACTAACGTGCCTGC+AGG | - | chr6_4:58194578-58194597 | None:intergenic | 60.0% |
| TGTGCCACATCTCACCGGGA+CGG | - | chr6_4:58194713-58194732 | None:intergenic | 60.0% | |
| CCGCACACGTGTCCTCCAAT+GGG | - | chr6_4:58194746-58194765 | None:intergenic | 60.0% | |
| CCCATTGGAGGACACGTGTG+CGG | + | chr6_4:58194743-58194762 | Msa0991860:intron | 60.0% | |
| ACCGCACACGTGTCCTCCAA+TGG | - | chr6_4:58194747-58194766 | None:intergenic | 60.0% | |
| CGCAGATGCGTGCTTCAGTG+AGG | + | chr6_4:58194775-58194794 | Msa0991860:intron | 60.0% | |
| GACGATGCGCCTTGGTATGG+TGG | + | chr6_4:58194813-58194832 | Msa0991860:intron | 60.0% | |
| ! | GGTGTTATGGCCGTCTGCCG+AGG | + | chr6_4:58193021-58193040 | Msa0991860:CDS | 65.0% |
| TTCCGAGCAGCCTCGGCAGA+CGG | - | chr6_4:58193034-58193053 | None:intergenic | 65.0% | |
| TCTGCCGAGGCTGCTCGGAA+TGG | + | chr6_4:58193034-58193053 | Msa0991860:CDS | 65.0% | |
| !! | GTGGGACGAAAGGTGCCTGC+AGG | + | chr6_4:58194560-58194579 | Msa0991860:intron | 65.0% |
| CTCCCTCAGACGATGCGCCT+TGG | + | chr6_4:58194805-58194824 | Msa0991860:intron | 65.0% | |
| ! | AGTGTCGCTCGCCGAGGCAC+CGG | + | chr6_4:58192128-58192147 | Msa0991860:CDS | 70.0% |
| !! | GGGAGGAGTGTCGCTCGCCG+AGG | + | chr6_4:58192122-58192141 | Msa0991860:CDS | 75.0% |
| GGCCGTCTGCCGAGGCTGCT+CGG | + | chr6_4:58193029-58193048 | Msa0991860:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 58190130 | 58195794 | 58190130 | ID=Msa0991860;Name=Msa0991860 |
| chr6_4 | mRNA | 58190130 | 58195794 | 58190130 | ID=Msa0991860-mRNA-1;Parent=Msa0991860;Name=Msa0991860-mRNA-1;_AED=0.14;_eAED=0.14;_QI=228|0.66|0.85|1|0.66|0.57|7|219|291 |
| chr6_4 | exon | 58190130 | 58190382 | 58190130 | ID=Msa0991860-mRNA-1:exon:11545;Parent=Msa0991860-mRNA-1 |
| chr6_4 | exon | 58192028 | 58192236 | 58192028 | ID=Msa0991860-mRNA-1:exon:11546;Parent=Msa0991860-mRNA-1 |
| chr6_4 | exon | 58192642 | 58192806 | 58192642 | ID=Msa0991860-mRNA-1:exon:11547;Parent=Msa0991860-mRNA-1 |
| chr6_4 | exon | 58192896 | 58193093 | 58192896 | ID=Msa0991860-mRNA-1:exon:11548;Parent=Msa0991860-mRNA-1 |
| chr6_4 | exon | 58193244 | 58193384 | 58193244 | ID=Msa0991860-mRNA-1:exon:11549;Parent=Msa0991860-mRNA-1 |
| chr6_4 | exon | 58195411 | 58195661 | 58195411 | ID=Msa0991860-mRNA-1:exon:11550;Parent=Msa0991860-mRNA-1 |
| chr6_4 | exon | 58195689 | 58195794 | 58195689 | ID=Msa0991860-mRNA-1:exon:11551;Parent=Msa0991860-mRNA-1 |
| chr6_4 | five_prime_UTR | 58190130 | 58190357 | 58190130 | ID=Msa0991860-mRNA-1:five_prime_utr;Parent=Msa0991860-mRNA-1 |
| chr6_4 | CDS | 58190358 | 58190382 | 58190358 | ID=Msa0991860-mRNA-1:cds;Parent=Msa0991860-mRNA-1 |
| chr6_4 | CDS | 58192028 | 58192236 | 58192028 | ID=Msa0991860-mRNA-1:cds;Parent=Msa0991860-mRNA-1 |
| chr6_4 | CDS | 58192642 | 58192806 | 58192642 | ID=Msa0991860-mRNA-1:cds;Parent=Msa0991860-mRNA-1 |
| chr6_4 | CDS | 58192896 | 58193093 | 58192896 | ID=Msa0991860-mRNA-1:cds;Parent=Msa0991860-mRNA-1 |
| chr6_4 | CDS | 58193244 | 58193384 | 58193244 | ID=Msa0991860-mRNA-1:cds;Parent=Msa0991860-mRNA-1 |
| chr6_4 | CDS | 58195411 | 58195548 | 58195411 | ID=Msa0991860-mRNA-1:cds;Parent=Msa0991860-mRNA-1 |
| chr6_4 | three_prime_UTR | 58195549 | 58195661 | 58195549 | ID=Msa0991860-mRNA-1:three_prime_utr;Parent=Msa0991860-mRNA-1 |
| chr6_4 | three_prime_UTR | 58195689 | 58195794 | 58195689 | ID=Msa0991860-mRNA-1:three_prime_utr;Parent=Msa0991860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
