AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0996340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0996340 MtrunA17_Chr6g0481131 90.606 330 16 1 1 315 582 911 0.0 620
Msa0996340 MtrunA17_Chr6g0481171 88.922 334 18 2 1 315 454 787 0.0 611
Msa0996340 MtrunA17_Chr5g0433761 74.016 254 66 0 1 254 580 833 2.22e-138 412
Msa0996340 MtrunA17_Chr3g0109841 76.271 236 56 0 1 236 583 818 2.55e-132 396
Msa0996340 MtrunA17_Chr6g0481241 74.486 243 23 3 57 284 1 219 4.32e-122 349
Msa0996340 MtrunA17_Chr7g0269581 61.039 231 90 0 1 231 576 806 1.07e-100 313
Msa0996340 MtrunA17_Chr1g0195241 58.407 226 94 0 1 226 561 786 1.97e-93 294
Msa0996340 MtrunA17_Chr4g0070011 59.052 232 92 2 1 231 576 805 3.87e-93 293
Msa0996340 MtrunA17_Chr2g0301621 57.759 232 95 2 1 231 574 803 1.75e-92 291
Msa0996340 MtrunA17_Chr6g0481261 94.175 103 6 0 57 159 1 103 1.79e-69 211
Msa0996340 MtrunA17_Chr6g0481271 60.000 150 30 5 189 315 1 143 2.06e-43 145
Msa0996340 MtrunA17_Chr6g0481211 69.792 96 10 2 239 315 1 96 1.89e-35 124
Msa0996340 MtrunA17_Chr6g0481151 91.525 59 5 0 1 59 38 96 8.35e-31 112
Msa0996340 MtrunA17_Chr6g0481161 90.909 44 4 0 109 152 1 44 9.99e-25 94.4
Msa0996340 MtrunA17_Chr5g0443091 32.821 195 104 6 1 176 492 678 1.89e-20 92.0
Msa0996340 MtrunA17_Chr4g0064501 31.884 207 121 7 1 198 481 676 6.52e-20 90.5
Msa0996340 MtrunA17_Chr3g0096241 30.769 182 114 4 1 179 485 657 5.08e-18 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0996340 AT5G37180.3 74.138 232 60 0 1 232 326 557 3.57e-129 380
Msa0996340 AT5G37180.2 74.138 232 60 0 1 232 384 615 2.03e-128 380
Msa0996340 AT5G37180.1 74.138 232 60 0 1 232 572 803 3.38e-126 380
Msa0996340 AT1G73370.2 61.486 296 107 3 1 294 538 828 1.27e-125 380
Msa0996340 AT1G73370.3 61.486 296 107 3 1 294 582 872 1.38e-125 382
Msa0996340 AT1G73370.1 61.486 296 107 3 1 294 582 872 1.38e-125 382
Msa0996340 AT5G20830.3 60.776 232 88 2 1 231 578 807 8.13e-99 308
Msa0996340 AT5G20830.2 60.776 232 88 2 1 231 578 807 8.13e-99 308
Msa0996340 AT5G20830.1 60.776 232 88 2 1 231 578 807 8.13e-99 308
Msa0996340 AT4G02280.1 61.233 227 88 0 1 227 578 804 1.07e-98 308
Msa0996340 AT3G43190.2 59.914 232 90 2 1 231 578 807 4.41e-97 304
Msa0996340 AT3G43190.1 59.914 232 90 2 1 231 578 807 4.41e-97 304
Msa0996340 AT5G49190.3 56.710 231 100 0 1 231 509 739 9.82e-97 301
Msa0996340 AT5G49190.1 56.710 231 100 0 1 231 575 805 3.23e-96 301
Msa0996340 AT5G49190.2 56.710 231 100 0 1 231 565 795 3.29e-96 301
Msa0996340 AT4G10120.4 32.984 191 116 4 1 188 335 516 1.41e-22 98.6
Msa0996340 AT4G10120.5 32.984 191 116 4 1 188 308 489 1.67e-22 98.6
Msa0996340 AT4G10120.2 32.984 191 116 4 1 188 509 690 2.07e-22 98.2
Msa0996340 AT4G10120.3 32.984 191 116 4 1 188 509 690 2.07e-22 98.2
Msa0996340 AT4G10120.1 32.984 191 116 4 1 188 509 690 2.07e-22 98.2
Msa0996340 AT5G11110.1 29.717 212 129 7 1 203 484 684 2.62e-19 89.0
Msa0996340 AT5G20280.1 30.583 206 123 7 1 197 482 676 5.31e-19 88.2
Msa0996340 AT1G04920.1 28.821 229 132 7 1 206 490 710 3.26e-18 85.9
Msa0996340 AT1G78800.1 26.203 187 121 5 3 186 217 389 1.01e-11 65.5

Find 61 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTACCTCTCTAAGTATT+TGG 0.124183 6_4:+74412469 Msa0996340:CDS
TTGAATATGGGATCAATTTA+TGG 0.132045 6_4:+74411265 Msa0996340:CDS
TTCTGTTTCTTCTCTATCTT+TGG 0.134203 6_4:-74410620 None:intergenic
CAAAGTGGTGATCTTTATTC+TGG 0.182888 6_4:+74412404 Msa0996340:CDS
TGGGATCAATTTATGGGTTT+TGG 0.205721 6_4:+74411272 Msa0996340:CDS
TGCAAACAAAGTGTTGAATA+TGG 0.228861 6_4:+74411252 Msa0996340:CDS
GGTTCTTGAGGTACCTCTTT+AGG 0.254366 6_4:-74411696 None:intergenic
ATTATAGTTGATGGTGTCTT+AGG 0.255544 6_4:+74410874 Msa0996340:CDS
GAAACTATGTTCCAATGTTC+AGG 0.294329 6_4:-74410973 None:intergenic
ATTGAAGATTATAAAACATT+TGG 0.298630 6_4:-74411339 None:intergenic
CCACCATTGTATGAAGCTTT+TGG 0.311053 6_4:+74410781 Msa0996340:CDS
GGATTACGTTGGTTGCTTCC+AGG 0.317665 6_4:+74412425 Msa0996340:CDS
TTGGTAAATATTGTAATTGT+TGG 0.320007 6_4:+74410574 Msa0996340:CDS
TTTCATATTGATCCTCATAA+TGG 0.327462 6_4:+74410898 Msa0996340:CDS
GTCTTCAAAGAATCAATAAA+TGG 0.327611 6_4:+74411004 Msa0996340:CDS
TGAGGTACCTCTTTAGGAAT+TGG 0.346022 6_4:-74411690 None:intergenic
TGAATATGGGATCAATTTAT+GGG 0.351676 6_4:+74411266 Msa0996340:CDS
TAATCTTCAATTTAGGAACT+TGG 0.378334 6_4:+74411351 Msa0996340:CDS
ATTGATTCATCTCCATTATG+AGG 0.383499 6_4:-74410910 None:intergenic
CATTACATTGTAGGCAAGAA+AGG 0.403513 6_4:+74411665 Msa0996340:intron
ATGAAAGAATACAAACTTCA+AGG 0.422507 6_4:+74410667 Msa0996340:CDS
GAACAAGCGACTAAGAAGTT+TGG 0.433098 6_4:+74410555 Msa0996340:CDS
ATGAACATAAAAGTAATTCC+TGG 0.436230 6_4:-74412443 None:intergenic
CCTTGGTTTGTTGCAAAAGT+TGG 0.440752 6_4:-74410838 None:intergenic
GTAAATATTGTAATTGTTGG+AGG 0.450524 6_4:+74410577 Msa0996340:CDS
TGGAACATAGTTTCTAAAGA+TGG 0.454978 6_4:+74410982 Msa0996340:CDS
GCAAACAAAGTGTTGAATAT+GGG 0.464065 6_4:+74411253 Msa0996340:CDS
AACTTCAAGGTCAGTTCAGA+TGG 0.474531 6_4:+74410680 Msa0996340:CDS
AGAATTGTTGACATTGGTTG+AGG 0.481731 6_4:-74411717 None:intergenic
AATGCTGCCAACCGGGTTTG+AGG 0.497047 6_4:-74411801 None:intergenic
CGATGTATCGCTGATACAAA+AGG 0.501900 6_4:+74410745 Msa0996340:CDS
AAGTTTGTATTCTTTCATCA+AGG 0.514646 6_4:-74410662 None:intergenic
GTTGAACAAAGAACAAAAGT+TGG 0.520029 6_4:+74411300 Msa0996340:CDS
CAGGGGTGAATCATCAAGTA+AGG 0.524073 6_4:+74412367 Msa0996340:intron
CCAGCTGAAATTATAGTTGA+TGG 0.524213 6_4:+74410865 Msa0996340:CDS
CCATCAACTATAATTTCAGC+TGG 0.525318 6_4:-74410865 None:intergenic
TTGTGCTGCATCATGCCCCT+TGG 0.530931 6_4:-74411763 None:intergenic
ATCTTTATTCTGGATTACGT+TGG 0.533971 6_4:+74412414 Msa0996340:CDS
AAAGGTACCAATTCCTAAAG+AGG 0.535265 6_4:+74411683 Msa0996340:CDS
GACATTGGTTGAGGTTCTTG+AGG 0.537065 6_4:-74411708 None:intergenic
TCTTCGCGAACCACTCGACT+AGG 0.546019 6_4:-74410534 None:intergenic
TCATCAAGTAAGGAACTAGC+TGG 0.559863 6_4:+74412377 Msa0996340:CDS
AAAGCAGAAGCTACTTCCAA+GGG 0.561938 6_4:+74411747 Msa0996340:CDS
AAAAGCAGAAGCTACTTCCA+AGG 0.562076 6_4:+74411746 Msa0996340:CDS
AGGTCAGTTCAGATGGATTG+TGG 0.570639 6_4:+74410687 Msa0996340:CDS
AATATTCCAAATACTTAGAG+AGG 0.575973 6_4:-74412475 None:intergenic
CAAAGAACAAAAGTTGGCAA+AGG 0.588238 6_4:+74411306 Msa0996340:CDS
GCAAGACTAATCCTGAACAT+TGG 0.590830 6_4:+74410962 Msa0996340:CDS
TTGGCAAGAATTGTTGACAT+TGG 0.593095 6_4:-74411723 None:intergenic
CCATAATCTTCTCAATGGCA+AGG 0.595223 6_4:+74410485 None:intergenic
TTTGGAATATTTATTCACAC+GGG 0.606329 6_4:+74412487 Msa0996340:CDS
GTCATTGAAGCAATGAACTG+TGG 0.611801 6_4:+74410811 Msa0996340:CDS
TAATTTCAGCTGGACCACCT+TGG 0.611946 6_4:-74410855 None:intergenic
ATTTGGAATATTTATTCACA+CGG 0.612784 6_4:+74412486 Msa0996340:CDS
GAACTAGCTGGTAAACAAAG+TGG 0.635858 6_4:+74412389 Msa0996340:CDS
AGACCAAAAGCTTCATACAA+TGG 0.640055 6_4:-74410784 None:intergenic
CCAAAAGCTTCATACAATGG+TGG 0.646093 6_4:-74410781 None:intergenic
ACATTAGTGGCCTAGTCGAG+TGG 0.646877 6_4:+74410524 Msa0996340:CDS
AAACTGAAGTACCTCAAACC+CGG 0.659346 6_4:+74411790 Msa0996340:CDS
CAAACTGATAGATATCGCAA+CGG 0.721578 6_4:+74410712 Msa0996340:CDS
AAGCAGAAGCTACTTCCAAG+GGG 0.733208 6_4:+74411748 Msa0996340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTTCAATAGTTATTTA+AGG - chr6_4:74411633-74411652 None:intergenic 10.0%
!!! AAATAACTATTGAAATATTT+TGG + chr6_4:74411634-74411653 Msa0996340:intron 10.0%
!! AATATTTCAATAGTTATTTA+AGG - chr6_4:74411633-74411652 None:intergenic 10.0%
!!! AAATAACTATTGAAATATTT+TGG + chr6_4:74411634-74411653 Msa0996340:intron 10.0%
!! TTTGAAAATGACAAATAAAT+AGG + chr6_4:74411089-74411108 Msa0996340:intron 15.0%
!! ATTGAAGATTATAAAACATT+TGG - chr6_4:74411342-74411361 None:intergenic 15.0%
!!! TGTTTTATAATCTTCAATTT+AGG + chr6_4:74411344-74411363 Msa0996340:CDS 15.0%
!! TTTGAAAATGACAAATAAAT+AGG + chr6_4:74411089-74411108 Msa0996340:intron 15.0%
!! ATTGAAGATTATAAAACATT+TGG - chr6_4:74411342-74411361 None:intergenic 15.0%
!!! TGTTTTATAATCTTCAATTT+AGG + chr6_4:74411344-74411363 Msa0996340:CDS 15.0%
!! TTGGTAAATATTGTAATTGT+TGG + chr6_4:74410574-74410593 Msa0996340:CDS 20.0%
!! TAGTTTAACAAACATTCATA+TGG + chr6_4:74411172-74411191 Msa0996340:intron 20.0%
!! GAAAAATTTCATTACATTGT+AGG + chr6_4:74411656-74411675 Msa0996340:intron 20.0%
!! TAACACCAAATATTCATTTA+GGG - chr6_4:74411884-74411903 None:intergenic 20.0%
!! TTAACACCAAATATTCATTT+AGG - chr6_4:74411885-74411904 None:intergenic 20.0%
!! ATTGCAAAATCATAATACTT+GGG - chr6_4:74411956-74411975 None:intergenic 20.0%
!! TATTGCAAAATCATAATACT+TGG - chr6_4:74411957-74411976 None:intergenic 20.0%
!!! GTATTATGATTTTGCAATAT+TGG + chr6_4:74411958-74411977 Msa0996340:intron 20.0%
!!! TTCTTCCATGTTAATTTTTT+TGG - chr6_4:74412247-74412266 None:intergenic 20.0%
!!! ATTTGGAATATTTATTCACA+CGG + chr6_4:74412486-74412505 Msa0996340:CDS 20.0%
!! TTGGTAAATATTGTAATTGT+TGG + chr6_4:74410574-74410593 Msa0996340:CDS 20.0%
!! TAGTTTAACAAACATTCATA+TGG + chr6_4:74411172-74411191 Msa0996340:intron 20.0%
!! GAAAAATTTCATTACATTGT+AGG + chr6_4:74411656-74411675 Msa0996340:intron 20.0%
!! TAACACCAAATATTCATTTA+GGG - chr6_4:74411884-74411903 None:intergenic 20.0%
!! TTAACACCAAATATTCATTT+AGG - chr6_4:74411885-74411904 None:intergenic 20.0%
!! ATTGCAAAATCATAATACTT+GGG - chr6_4:74411956-74411975 None:intergenic 20.0%
!! TATTGCAAAATCATAATACT+TGG - chr6_4:74411957-74411976 None:intergenic 20.0%
!!! GTATTATGATTTTGCAATAT+TGG + chr6_4:74411958-74411977 Msa0996340:intron 20.0%
!!! TTCTTCCATGTTAATTTTTT+TGG - chr6_4:74412247-74412266 None:intergenic 20.0%
!!! ATTTGGAATATTTATTCACA+CGG + chr6_4:74412486-74412505 Msa0996340:CDS 20.0%
! GTAAATATTGTAATTGTTGG+AGG + chr6_4:74410577-74410596 Msa0996340:CDS 25.0%
! AAGTTTGTATTCTTTCATCA+AGG - chr6_4:74410665-74410684 None:intergenic 25.0%
! ATGAAAGAATACAAACTTCA+AGG + chr6_4:74410667-74410686 Msa0996340:CDS 25.0%
! TTTCATATTGATCCTCATAA+TGG + chr6_4:74410898-74410917 Msa0996340:CDS 25.0%
! GTCTTCAAAGAATCAATAAA+TGG + chr6_4:74411004-74411023 Msa0996340:CDS 25.0%
! TTTATGGTTACGGATATTAT+CGG + chr6_4:74411038-74411057 Msa0996340:intron 25.0%
! TTAACAAACATTCATATGGT+TGG + chr6_4:74411176-74411195 Msa0996340:intron 25.0%
! TTGAATATGGGATCAATTTA+TGG + chr6_4:74411265-74411284 Msa0996340:CDS 25.0%
! TGAATATGGGATCAATTTAT+GGG + chr6_4:74411266-74411285 Msa0996340:CDS 25.0%
! TAATCTTCAATTTAGGAACT+TGG + chr6_4:74411351-74411370 Msa0996340:CDS 25.0%
! GTTAGTTGAGATTCAATTTA+GGG - chr6_4:74411831-74411850 None:intergenic 25.0%
! TGTTAGTTGAGATTCAATTT+AGG - chr6_4:74411832-74411851 None:intergenic 25.0%
! AGTTACCCTAAATGAATATT+TGG + chr6_4:74411876-74411895 Msa0996340:intron 25.0%
! AATTGTTATAATTATGCCCT+AGG + chr6_4:74412214-74412233 Msa0996340:intron 25.0%
! ATTGTTATAATTATGCCCTA+GGG + chr6_4:74412215-74412234 Msa0996340:intron 25.0%
! CTATGCCAAAAAAATTAACA+TGG + chr6_4:74412239-74412258 Msa0996340:intron 25.0%
!!! TTTGCATGTATTTTTGTCTT+TGG + chr6_4:74412339-74412358 Msa0996340:intron 25.0%
! ATGAACATAAAAGTAATTCC+TGG - chr6_4:74412446-74412465 None:intergenic 25.0%
! AATATTCCAAATACTTAGAG+AGG - chr6_4:74412478-74412497 None:intergenic 25.0%
!! TTTGGAATATTTATTCACAC+GGG + chr6_4:74412487-74412506 Msa0996340:CDS 25.0%
! GTAAATATTGTAATTGTTGG+AGG + chr6_4:74410577-74410596 Msa0996340:CDS 25.0%
! AAGTTTGTATTCTTTCATCA+AGG - chr6_4:74410665-74410684 None:intergenic 25.0%
! ATGAAAGAATACAAACTTCA+AGG + chr6_4:74410667-74410686 Msa0996340:CDS 25.0%
! TTTCATATTGATCCTCATAA+TGG + chr6_4:74410898-74410917 Msa0996340:CDS 25.0%
! GTCTTCAAAGAATCAATAAA+TGG + chr6_4:74411004-74411023 Msa0996340:CDS 25.0%
! TTTATGGTTACGGATATTAT+CGG + chr6_4:74411038-74411057 Msa0996340:intron 25.0%
! TTAACAAACATTCATATGGT+TGG + chr6_4:74411176-74411195 Msa0996340:intron 25.0%
! TTGAATATGGGATCAATTTA+TGG + chr6_4:74411265-74411284 Msa0996340:CDS 25.0%
! TGAATATGGGATCAATTTAT+GGG + chr6_4:74411266-74411285 Msa0996340:CDS 25.0%
! TAATCTTCAATTTAGGAACT+TGG + chr6_4:74411351-74411370 Msa0996340:CDS 25.0%
! GTTAGTTGAGATTCAATTTA+GGG - chr6_4:74411831-74411850 None:intergenic 25.0%
! TGTTAGTTGAGATTCAATTT+AGG - chr6_4:74411832-74411851 None:intergenic 25.0%
! AGTTACCCTAAATGAATATT+TGG + chr6_4:74411876-74411895 Msa0996340:intron 25.0%
! AATTGTTATAATTATGCCCT+AGG + chr6_4:74412214-74412233 Msa0996340:intron 25.0%
! ATTGTTATAATTATGCCCTA+GGG + chr6_4:74412215-74412234 Msa0996340:intron 25.0%
! CTATGCCAAAAAAATTAACA+TGG + chr6_4:74412239-74412258 Msa0996340:intron 25.0%
!!! TTTGCATGTATTTTTGTCTT+TGG + chr6_4:74412339-74412358 Msa0996340:intron 25.0%
! ATGAACATAAAAGTAATTCC+TGG - chr6_4:74412446-74412465 None:intergenic 25.0%
! AATATTCCAAATACTTAGAG+AGG - chr6_4:74412478-74412497 None:intergenic 25.0%
!! TTTGGAATATTTATTCACAC+GGG + chr6_4:74412487-74412506 Msa0996340:CDS 25.0%
GACAAAGTGAAAAACATTAG+TGG + chr6_4:74410511-74410530 Msa0996340:CDS 30.0%
! TCTCTATCTTTGGATTTTGA+AGG - chr6_4:74410613-74410632 None:intergenic 30.0%
! TTCTGTTTCTTCTCTATCTT+TGG - chr6_4:74410623-74410642 None:intergenic 30.0%
!! ATTATAGTTGATGGTGTCTT+AGG + chr6_4:74410874-74410893 Msa0996340:CDS 30.0%
! ATTGATTCATCTCCATTATG+AGG - chr6_4:74410913-74410932 None:intergenic 30.0%
! TGGAACATAGTTTCTAAAGA+TGG + chr6_4:74410982-74411001 Msa0996340:CDS 30.0%
AATGGTACACTTCTGATTTA+TGG + chr6_4:74411022-74411041 Msa0996340:intron 30.0%
ACACTTCTGATTTATGGTTA+CGG + chr6_4:74411028-74411047 Msa0996340:intron 30.0%
TACGAAAGTGACAGTTAAAA+AGG + chr6_4:74411125-74411144 Msa0996340:intron 30.0%
! GTTTTCTTTGTAGCTATACA+TGG + chr6_4:74411221-74411240 Msa0996340:intron 30.0%
!! TGCAAACAAAGTGTTGAATA+TGG + chr6_4:74411252-74411271 Msa0996340:CDS 30.0%
!! GCAAACAAAGTGTTGAATAT+GGG + chr6_4:74411253-74411272 Msa0996340:CDS 30.0%
GTTGAACAAAGAACAAAAGT+TGG + chr6_4:74411300-74411319 Msa0996340:CDS 30.0%
! ATTTTTGTCTTTGGATTTGC+AGG + chr6_4:74412348-74412367 Msa0996340:intron 30.0%
! TTTTTGTCTTTGGATTTGCA+GGG + chr6_4:74412349-74412368 Msa0996340:intron 30.0%
ATCTTTATTCTGGATTACGT+TGG + chr6_4:74412414-74412433 Msa0996340:CDS 30.0%
TCATTACCTCTCTAAGTATT+TGG + chr6_4:74412469-74412488 Msa0996340:CDS 30.0%
GACAAAGTGAAAAACATTAG+TGG + chr6_4:74410511-74410530 Msa0996340:CDS 30.0%
! TCTCTATCTTTGGATTTTGA+AGG - chr6_4:74410613-74410632 None:intergenic 30.0%
! TTCTGTTTCTTCTCTATCTT+TGG - chr6_4:74410623-74410642 None:intergenic 30.0%
!! ATTATAGTTGATGGTGTCTT+AGG + chr6_4:74410874-74410893 Msa0996340:CDS 30.0%
! ATTGATTCATCTCCATTATG+AGG - chr6_4:74410913-74410932 None:intergenic 30.0%
! TGGAACATAGTTTCTAAAGA+TGG + chr6_4:74410982-74411001 Msa0996340:CDS 30.0%
AATGGTACACTTCTGATTTA+TGG + chr6_4:74411022-74411041 Msa0996340:intron 30.0%
ACACTTCTGATTTATGGTTA+CGG + chr6_4:74411028-74411047 Msa0996340:intron 30.0%
TACGAAAGTGACAGTTAAAA+AGG + chr6_4:74411125-74411144 Msa0996340:intron 30.0%
! GTTTTCTTTGTAGCTATACA+TGG + chr6_4:74411221-74411240 Msa0996340:intron 30.0%
!! TGCAAACAAAGTGTTGAATA+TGG + chr6_4:74411252-74411271 Msa0996340:CDS 30.0%
!! GCAAACAAAGTGTTGAATAT+GGG + chr6_4:74411253-74411272 Msa0996340:CDS 30.0%
GTTGAACAAAGAACAAAAGT+TGG + chr6_4:74411300-74411319 Msa0996340:CDS 30.0%
! ATTTTTGTCTTTGGATTTGC+AGG + chr6_4:74412348-74412367 Msa0996340:intron 30.0%
! TTTTTGTCTTTGGATTTGCA+GGG + chr6_4:74412349-74412368 Msa0996340:intron 30.0%
ATCTTTATTCTGGATTACGT+TGG + chr6_4:74412414-74412433 Msa0996340:CDS 30.0%
TCATTACCTCTCTAAGTATT+TGG + chr6_4:74412469-74412488 Msa0996340:CDS 30.0%
CAAACTGATAGATATCGCAA+CGG + chr6_4:74410712-74410731 Msa0996340:CDS 35.0%
! CTTTTGTATCAGCGATACAT+CGG - chr6_4:74410747-74410766 None:intergenic 35.0%
AGACCAAAAGCTTCATACAA+TGG - chr6_4:74410787-74410806 None:intergenic 35.0%
CCATCAACTATAATTTCAGC+TGG - chr6_4:74410868-74410887 None:intergenic 35.0%
CCAGCTGAAATTATAGTTGA+TGG + chr6_4:74410865-74410884 Msa0996340:CDS 35.0%
GAAACTATGTTCCAATGTTC+AGG - chr6_4:74410976-74410995 None:intergenic 35.0%
TGACAGTTAAAAAGGAACAG+AGG + chr6_4:74411133-74411152 Msa0996340:intron 35.0%
GACAGTTAAAAAGGAACAGA+GGG + chr6_4:74411134-74411153 Msa0996340:intron 35.0%
! TGGGATCAATTTATGGGTTT+TGG + chr6_4:74411272-74411291 Msa0996340:CDS 35.0%
CAAAGAACAAAAGTTGGCAA+AGG + chr6_4:74411306-74411325 Msa0996340:CDS 35.0%
CATTACATTGTAGGCAAGAA+AGG + chr6_4:74411665-74411684 Msa0996340:intron 35.0%
!! AAAGGTACCAATTCCTAAAG+AGG + chr6_4:74411683-74411702 Msa0996340:CDS 35.0%
! AGAATTGTTGACATTGGTTG+AGG - chr6_4:74411720-74411739 None:intergenic 35.0%
TTGGCAAGAATTGTTGACAT+TGG - chr6_4:74411726-74411745 None:intergenic 35.0%
AGTTGAGATTCAATTTAGGG+TGG - chr6_4:74411828-74411847 None:intergenic 35.0%
TTGAATCTCAACTAACACCA+AGG + chr6_4:74411835-74411854 Msa0996340:intron 35.0%
TTTGCATAAGTGACTTACCT+TGG - chr6_4:74411855-74411874 None:intergenic 35.0%
!!! TTTTTTTGGCATAGTCCCTA+GGG - chr6_4:74412233-74412252 None:intergenic 35.0%
!!! ATTTTTTTGGCATAGTCCCT+AGG - chr6_4:74412234-74412253 None:intergenic 35.0%
! TTTTGTCTTTGGATTTGCAG+GGG + chr6_4:74412350-74412369 Msa0996340:intron 35.0%
CAAAGTGGTGATCTTTATTC+TGG + chr6_4:74412404-74412423 Msa0996340:CDS 35.0%
CAAACTGATAGATATCGCAA+CGG + chr6_4:74410712-74410731 Msa0996340:CDS 35.0%
! CTTTTGTATCAGCGATACAT+CGG - chr6_4:74410747-74410766 None:intergenic 35.0%
AGACCAAAAGCTTCATACAA+TGG - chr6_4:74410787-74410806 None:intergenic 35.0%
CCATCAACTATAATTTCAGC+TGG - chr6_4:74410868-74410887 None:intergenic 35.0%
CCAGCTGAAATTATAGTTGA+TGG + chr6_4:74410865-74410884 Msa0996340:CDS 35.0%
GAAACTATGTTCCAATGTTC+AGG - chr6_4:74410976-74410995 None:intergenic 35.0%
TGACAGTTAAAAAGGAACAG+AGG + chr6_4:74411133-74411152 Msa0996340:intron 35.0%
GACAGTTAAAAAGGAACAGA+GGG + chr6_4:74411134-74411153 Msa0996340:intron 35.0%
! TGGGATCAATTTATGGGTTT+TGG + chr6_4:74411272-74411291 Msa0996340:CDS 35.0%
CAAAGAACAAAAGTTGGCAA+AGG + chr6_4:74411306-74411325 Msa0996340:CDS 35.0%
CATTACATTGTAGGCAAGAA+AGG + chr6_4:74411665-74411684 Msa0996340:intron 35.0%
!! AAAGGTACCAATTCCTAAAG+AGG + chr6_4:74411683-74411702 Msa0996340:CDS 35.0%
! AGAATTGTTGACATTGGTTG+AGG - chr6_4:74411720-74411739 None:intergenic 35.0%
TTGGCAAGAATTGTTGACAT+TGG - chr6_4:74411726-74411745 None:intergenic 35.0%
AGTTGAGATTCAATTTAGGG+TGG - chr6_4:74411828-74411847 None:intergenic 35.0%
TTGAATCTCAACTAACACCA+AGG + chr6_4:74411835-74411854 Msa0996340:intron 35.0%
TTTGCATAAGTGACTTACCT+TGG - chr6_4:74411855-74411874 None:intergenic 35.0%
!!! TTTTTTTGGCATAGTCCCTA+GGG - chr6_4:74412233-74412252 None:intergenic 35.0%
!!! ATTTTTTTGGCATAGTCCCT+AGG - chr6_4:74412234-74412253 None:intergenic 35.0%
! TTTTGTCTTTGGATTTGCAG+GGG + chr6_4:74412350-74412369 Msa0996340:intron 35.0%
CAAAGTGGTGATCTTTATTC+TGG + chr6_4:74412404-74412423 Msa0996340:CDS 35.0%
GAACAAGCGACTAAGAAGTT+TGG + chr6_4:74410555-74410574 Msa0996340:CDS 40.0%
AACTTCAAGGTCAGTTCAGA+TGG + chr6_4:74410680-74410699 Msa0996340:CDS 40.0%
CGATGTATCGCTGATACAAA+AGG + chr6_4:74410745-74410764 Msa0996340:CDS 40.0%
CCAAAAGCTTCATACAATGG+TGG - chr6_4:74410784-74410803 None:intergenic 40.0%
! CCACCATTGTATGAAGCTTT+TGG + chr6_4:74410781-74410800 Msa0996340:CDS 40.0%
GTCATTGAAGCAATGAACTG+TGG + chr6_4:74410811-74410830 Msa0996340:CDS 40.0%
!! CCTTGGTTTGTTGCAAAAGT+TGG - chr6_4:74410841-74410860 None:intergenic 40.0%
! CCAACTTTTGCAACAAACCA+AGG + chr6_4:74410838-74410857 Msa0996340:CDS 40.0%
! ACTTTTGCAACAAACCAAGG+TGG + chr6_4:74410841-74410860 Msa0996340:CDS 40.0%
GCAAGACTAATCCTGAACAT+TGG + chr6_4:74410962-74410981 Msa0996340:CDS 40.0%
! TGAGGTACCTCTTTAGGAAT+TGG - chr6_4:74411693-74411712 None:intergenic 40.0%
!!! GGAAGTAGCTTCTGCTTTTT+TGG - chr6_4:74411745-74411764 None:intergenic 40.0%
AAAAGCAGAAGCTACTTCCA+AGG + chr6_4:74411746-74411765 Msa0996340:CDS 40.0%
AAAGCAGAAGCTACTTCCAA+GGG + chr6_4:74411747-74411766 Msa0996340:CDS 40.0%
! AAACTGAAGTACCTCAAACC+CGG + chr6_4:74411790-74411809 Msa0996340:CDS 40.0%
AATAGCCTACATGACACTGA+CGG - chr6_4:74412086-74412105 None:intergenic 40.0%
TCATCAAGTAAGGAACTAGC+TGG + chr6_4:74412377-74412396 Msa0996340:CDS 40.0%
GAACTAGCTGGTAAACAAAG+TGG + chr6_4:74412389-74412408 Msa0996340:CDS 40.0%
GAACAAGCGACTAAGAAGTT+TGG + chr6_4:74410555-74410574 Msa0996340:CDS 40.0%
AACTTCAAGGTCAGTTCAGA+TGG + chr6_4:74410680-74410699 Msa0996340:CDS 40.0%
CGATGTATCGCTGATACAAA+AGG + chr6_4:74410745-74410764 Msa0996340:CDS 40.0%
CCAAAAGCTTCATACAATGG+TGG - chr6_4:74410784-74410803 None:intergenic 40.0%
! CCACCATTGTATGAAGCTTT+TGG + chr6_4:74410781-74410800 Msa0996340:CDS 40.0%
GTCATTGAAGCAATGAACTG+TGG + chr6_4:74410811-74410830 Msa0996340:CDS 40.0%
!! CCTTGGTTTGTTGCAAAAGT+TGG - chr6_4:74410841-74410860 None:intergenic 40.0%
! CCAACTTTTGCAACAAACCA+AGG + chr6_4:74410838-74410857 Msa0996340:CDS 40.0%
! ACTTTTGCAACAAACCAAGG+TGG + chr6_4:74410841-74410860 Msa0996340:CDS 40.0%
GCAAGACTAATCCTGAACAT+TGG + chr6_4:74410962-74410981 Msa0996340:CDS 40.0%
! TGAGGTACCTCTTTAGGAAT+TGG - chr6_4:74411693-74411712 None:intergenic 40.0%
!!! GGAAGTAGCTTCTGCTTTTT+TGG - chr6_4:74411745-74411764 None:intergenic 40.0%
AAAAGCAGAAGCTACTTCCA+AGG + chr6_4:74411746-74411765 Msa0996340:CDS 40.0%
AAAGCAGAAGCTACTTCCAA+GGG + chr6_4:74411747-74411766 Msa0996340:CDS 40.0%
! AAACTGAAGTACCTCAAACC+CGG + chr6_4:74411790-74411809 Msa0996340:CDS 40.0%
AATAGCCTACATGACACTGA+CGG - chr6_4:74412086-74412105 None:intergenic 40.0%
TCATCAAGTAAGGAACTAGC+TGG + chr6_4:74412377-74412396 Msa0996340:CDS 40.0%
GAACTAGCTGGTAAACAAAG+TGG + chr6_4:74412389-74412408 Msa0996340:CDS 40.0%
!! AGGTCAGTTCAGATGGATTG+TGG + chr6_4:74410687-74410706 Msa0996340:CDS 45.0%
TAATTTCAGCTGGACCACCT+TGG - chr6_4:74410858-74410877 None:intergenic 45.0%
! GGTTCTTGAGGTACCTCTTT+AGG - chr6_4:74411699-74411718 None:intergenic 45.0%
! GACATTGGTTGAGGTTCTTG+AGG - chr6_4:74411711-74411730 None:intergenic 45.0%
AAGCAGAAGCTACTTCCAAG+GGG + chr6_4:74411748-74411767 Msa0996340:CDS 45.0%
AAGATCCGTCAGTGTCATGT+AGG + chr6_4:74412078-74412097 Msa0996340:intron 45.0%
AACGACCTAGTTAGTGATCG+AGG + chr6_4:74412119-74412138 Msa0996340:intron 45.0%
ACGACCTAGTTAGTGATCGA+GGG + chr6_4:74412120-74412139 Msa0996340:intron 45.0%
ATGTCCCTCGATCACTAACT+AGG - chr6_4:74412127-74412146 None:intergenic 45.0%
GGGACATGATTGTCACAAGA+TGG + chr6_4:74412140-74412159 Msa0996340:intron 45.0%
CAGGGGTGAATCATCAAGTA+AGG + chr6_4:74412367-74412386 Msa0996340:intron 45.0%
!! AGGTCAGTTCAGATGGATTG+TGG + chr6_4:74410687-74410706 Msa0996340:CDS 45.0%
TAATTTCAGCTGGACCACCT+TGG - chr6_4:74410858-74410877 None:intergenic 45.0%
! GGTTCTTGAGGTACCTCTTT+AGG - chr6_4:74411699-74411718 None:intergenic 45.0%
! GACATTGGTTGAGGTTCTTG+AGG - chr6_4:74411711-74411730 None:intergenic 45.0%
AAGCAGAAGCTACTTCCAAG+GGG + chr6_4:74411748-74411767 Msa0996340:CDS 45.0%
AAGATCCGTCAGTGTCATGT+AGG + chr6_4:74412078-74412097 Msa0996340:intron 45.0%
AACGACCTAGTTAGTGATCG+AGG + chr6_4:74412119-74412138 Msa0996340:intron 45.0%
ACGACCTAGTTAGTGATCGA+GGG + chr6_4:74412120-74412139 Msa0996340:intron 45.0%
ATGTCCCTCGATCACTAACT+AGG - chr6_4:74412127-74412146 None:intergenic 45.0%
GGGACATGATTGTCACAAGA+TGG + chr6_4:74412140-74412159 Msa0996340:intron 45.0%
CAGGGGTGAATCATCAAGTA+AGG + chr6_4:74412367-74412386 Msa0996340:intron 45.0%
!!! TTTTACAATATATAATAAAT+AGG + chr6_4:74411607-74411626 Msa0996340:intron 5.0%
!!! TTTTACAATATATAATAAAT+AGG + chr6_4:74411607-74411626 Msa0996340:intron 5.0%
ACATTAGTGGCCTAGTCGAG+TGG + chr6_4:74410524-74410543 Msa0996340:CDS 50.0%
! TGAAGTACCTCAAACCCGGT+TGG + chr6_4:74411794-74411813 Msa0996340:intron 50.0%
! GGATTACGTTGGTTGCTTCC+AGG + chr6_4:74412425-74412444 Msa0996340:CDS 50.0%
ACATTAGTGGCCTAGTCGAG+TGG + chr6_4:74410524-74410543 Msa0996340:CDS 50.0%
! TGAAGTACCTCAAACCCGGT+TGG + chr6_4:74411794-74411813 Msa0996340:intron 50.0%
! GGATTACGTTGGTTGCTTCC+AGG + chr6_4:74412425-74412444 Msa0996340:CDS 50.0%
TCTTCGCGAACCACTCGACT+AGG - chr6_4:74410537-74410556 None:intergenic 55.0%
TTGTGCTGCATCATGCCCCT+TGG - chr6_4:74411766-74411785 None:intergenic 55.0%
AATGCTGCCAACCGGGTTTG+AGG - chr6_4:74411804-74411823 None:intergenic 55.0%
! AGGGTGGTAATGCTGCCAAC+CGG - chr6_4:74411812-74411831 None:intergenic 55.0%
TCTTCGCGAACCACTCGACT+AGG - chr6_4:74410537-74410556 None:intergenic 55.0%
TTGTGCTGCATCATGCCCCT+TGG - chr6_4:74411766-74411785 None:intergenic 55.0%
AATGCTGCCAACCGGGTTTG+AGG - chr6_4:74411804-74411823 None:intergenic 55.0%
! AGGGTGGTAATGCTGCCAAC+CGG - chr6_4:74411812-74411831 None:intergenic 55.0%
! GGGTGGTAATGCTGCCAACC+GGG - chr6_4:74411811-74411830 None:intergenic 60.0%
! GGGTGGTAATGCTGCCAACC+GGG - chr6_4:74411811-74411830 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 74410499 74412517 74410499 ID=Msa0996340;Name=Msa0996340
chr6_4 mRNA 74410499 74412517 74410499 ID=Msa0996340-mRNA-1;Parent=Msa0996340;Name=Msa0996340-mRNA-1;_AED=0.16;_eAED=0.22;_QI=0|0|0|1|1|1|4|0|315
chr6_4 exon 74410499 74411025 74410499 ID=Msa0996340-mRNA-1:exon:13932;Parent=Msa0996340-mRNA-1
chr6_4 exon 74411234 74411372 74411234 ID=Msa0996340-mRNA-1:exon:13933;Parent=Msa0996340-mRNA-1
chr6_4 exon 74411678 74411811 74411678 ID=Msa0996340-mRNA-1:exon:13934;Parent=Msa0996340-mRNA-1
chr6_4 exon 74412370 74412517 74412370 ID=Msa0996340-mRNA-1:exon:13935;Parent=Msa0996340-mRNA-1
chr6_4 CDS 74410499 74411025 74410499 ID=Msa0996340-mRNA-1:cds;Parent=Msa0996340-mRNA-1
chr6_4 CDS 74411234 74411372 74411234 ID=Msa0996340-mRNA-1:cds;Parent=Msa0996340-mRNA-1
chr6_4 CDS 74411678 74411811 74411678 ID=Msa0996340-mRNA-1:cds;Parent=Msa0996340-mRNA-1
chr6_4 CDS 74412370 74412517 74412370 ID=Msa0996340-mRNA-1:cds;Parent=Msa0996340-mRNA-1
Gene Sequence

>Msa0996340

ATGGCAAGGCTTGACAAAGTGAAAAACATTAGTGGCCTAGTCGAGTGGTTCGCGAAGAACAAGCGACTAAGAAGTTTGGTAAATATTGTAATTGTTGGAGGATTCTTCGATCCTTCAAAATCCAAAGATAGAGAAGAAACAGAAGAAATCAAGAAGATGCATACCTTGATGAAAGAATACAAACTTCAAGGTCAGTTCAGATGGATTGTGGCACAAACTGATAGATATCGCAACGGAGAGCTTTACCGATGTATCGCTGATACAAAAGGAGCTTTTGTTCAACCACCATTGTATGAAGCTTTTGGTCTAACAGTCATTGAAGCAATGAACTGTGGATTACCAACTTTTGCAACAAACCAAGGTGGTCCAGCTGAAATTATAGTTGATGGTGTCTTAGGTTTTCATATTGATCCTCATAATGGAGATGAATCAATCAAAAAGATTTCTGAATTTTTTGAGAAGTGCAAGACTAATCCTGAACATTGGAACATAGTTTCTAAAGATGGTCTTCAAAGAATCAATAAATGCTATACATGGAAGATATATGCAAACAAAGTGTTGAATATGGGATCAATTTATGGGTTTTGGAGAAAGTTGAACAAAGAACAAAAGTTGGCAAAGGAAAGATATATCCAAATGTTTTATAATCTTCAATTTAGGAACTTGGCAAGAAAGGTACCAATTCCTAAAGAGGTACCTCAAGAACCTCAACCAATGTCAACAATTCTTGCCAAAAAAGCAGAAGCTACTTCCAAGGGGCATGATGCAGCACAAGCAAAAACTGAAGTACCTCAAACCCGGGGTGAATCATCAAGTAAGGAACTAGCTGGTAAACAAAGTGGTGATCTTTATTCTGGATTACGTTGGTTGCTTCCAGGAATTACTTTTATGTTCATCATTCATTACCTCTCTAAGTATTTGGAATATTTATTCACACGGGAGCAATAA

Protein sequence

>Msa0996340

MARLDKVKNISGLVEWFAKNKRLRSLVNIVIVGGFFDPSKSKDREETEEIKKMHTLMKEYKLQGQFRWIVAQTDRYRNGELYRCIADTKGAFVQPPLYEAFGLTVIEAMNCGLPTFATNQGGPAEIIVDGVLGFHIDPHNGDESIKKISEFFEKCKTNPEHWNIVSKDGLQRINKCYTWKIYANKVLNMGSIYGFWRKLNKEQKLAKERYIQMFYNLQFRNLARKVPIPKEVPQEPQPMSTILAKKAEATSKGHDAAQAKTEVPQTRGESSSKELAGKQSGDLYSGLRWLLPGITFMFIIHYLSKYLEYLFTREQ*