Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0996340 | XP_039682536.1 | 90.606 | 330 | 16 | 1 | 1 | 315 | 582 | 911 | 0.0 | 620 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0996340 | sp|F4K5W8|SUS5_ARATH | 74.138 | 232 | 60 | 0 | 1 | 232 | 571 | 802 | 2.79e-125 | 380 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0996340 | A0A396HIZ4 | 90.606 | 330 | 16 | 1 | 1 | 315 | 582 | 911 | 0.0 | 620 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0996340 | Msa1031930 | 0.800821 | 1.204016e-48 | -8.615850e-47 |
Msa0896440 | Msa0996340 | 0.811219 | 7.811024e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0996340 | MtrunA17_Chr6g0481131 | 90.606 | 330 | 16 | 1 | 1 | 315 | 582 | 911 | 0.0 | 620 |
Msa0996340 | MtrunA17_Chr6g0481171 | 88.922 | 334 | 18 | 2 | 1 | 315 | 454 | 787 | 0.0 | 611 |
Msa0996340 | MtrunA17_Chr5g0433761 | 74.016 | 254 | 66 | 0 | 1 | 254 | 580 | 833 | 2.22e-138 | 412 |
Msa0996340 | MtrunA17_Chr3g0109841 | 76.271 | 236 | 56 | 0 | 1 | 236 | 583 | 818 | 2.55e-132 | 396 |
Msa0996340 | MtrunA17_Chr6g0481241 | 74.486 | 243 | 23 | 3 | 57 | 284 | 1 | 219 | 4.32e-122 | 349 |
Msa0996340 | MtrunA17_Chr7g0269581 | 61.039 | 231 | 90 | 0 | 1 | 231 | 576 | 806 | 1.07e-100 | 313 |
Msa0996340 | MtrunA17_Chr1g0195241 | 58.407 | 226 | 94 | 0 | 1 | 226 | 561 | 786 | 1.97e-93 | 294 |
Msa0996340 | MtrunA17_Chr4g0070011 | 59.052 | 232 | 92 | 2 | 1 | 231 | 576 | 805 | 3.87e-93 | 293 |
Msa0996340 | MtrunA17_Chr2g0301621 | 57.759 | 232 | 95 | 2 | 1 | 231 | 574 | 803 | 1.75e-92 | 291 |
Msa0996340 | MtrunA17_Chr6g0481261 | 94.175 | 103 | 6 | 0 | 57 | 159 | 1 | 103 | 1.79e-69 | 211 |
Msa0996340 | MtrunA17_Chr6g0481271 | 60.000 | 150 | 30 | 5 | 189 | 315 | 1 | 143 | 2.06e-43 | 145 |
Msa0996340 | MtrunA17_Chr6g0481211 | 69.792 | 96 | 10 | 2 | 239 | 315 | 1 | 96 | 1.89e-35 | 124 |
Msa0996340 | MtrunA17_Chr6g0481151 | 91.525 | 59 | 5 | 0 | 1 | 59 | 38 | 96 | 8.35e-31 | 112 |
Msa0996340 | MtrunA17_Chr6g0481161 | 90.909 | 44 | 4 | 0 | 109 | 152 | 1 | 44 | 9.99e-25 | 94.4 |
Msa0996340 | MtrunA17_Chr5g0443091 | 32.821 | 195 | 104 | 6 | 1 | 176 | 492 | 678 | 1.89e-20 | 92.0 |
Msa0996340 | MtrunA17_Chr4g0064501 | 31.884 | 207 | 121 | 7 | 1 | 198 | 481 | 676 | 6.52e-20 | 90.5 |
Msa0996340 | MtrunA17_Chr3g0096241 | 30.769 | 182 | 114 | 4 | 1 | 179 | 485 | 657 | 5.08e-18 | 84.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0996340 | AT5G37180.3 | 74.138 | 232 | 60 | 0 | 1 | 232 | 326 | 557 | 3.57e-129 | 380 |
Msa0996340 | AT5G37180.2 | 74.138 | 232 | 60 | 0 | 1 | 232 | 384 | 615 | 2.03e-128 | 380 |
Msa0996340 | AT5G37180.1 | 74.138 | 232 | 60 | 0 | 1 | 232 | 572 | 803 | 3.38e-126 | 380 |
Msa0996340 | AT1G73370.2 | 61.486 | 296 | 107 | 3 | 1 | 294 | 538 | 828 | 1.27e-125 | 380 |
Msa0996340 | AT1G73370.3 | 61.486 | 296 | 107 | 3 | 1 | 294 | 582 | 872 | 1.38e-125 | 382 |
Msa0996340 | AT1G73370.1 | 61.486 | 296 | 107 | 3 | 1 | 294 | 582 | 872 | 1.38e-125 | 382 |
Msa0996340 | AT5G20830.3 | 60.776 | 232 | 88 | 2 | 1 | 231 | 578 | 807 | 8.13e-99 | 308 |
Msa0996340 | AT5G20830.2 | 60.776 | 232 | 88 | 2 | 1 | 231 | 578 | 807 | 8.13e-99 | 308 |
Msa0996340 | AT5G20830.1 | 60.776 | 232 | 88 | 2 | 1 | 231 | 578 | 807 | 8.13e-99 | 308 |
Msa0996340 | AT4G02280.1 | 61.233 | 227 | 88 | 0 | 1 | 227 | 578 | 804 | 1.07e-98 | 308 |
Msa0996340 | AT3G43190.2 | 59.914 | 232 | 90 | 2 | 1 | 231 | 578 | 807 | 4.41e-97 | 304 |
Msa0996340 | AT3G43190.1 | 59.914 | 232 | 90 | 2 | 1 | 231 | 578 | 807 | 4.41e-97 | 304 |
Msa0996340 | AT5G49190.3 | 56.710 | 231 | 100 | 0 | 1 | 231 | 509 | 739 | 9.82e-97 | 301 |
Msa0996340 | AT5G49190.1 | 56.710 | 231 | 100 | 0 | 1 | 231 | 575 | 805 | 3.23e-96 | 301 |
Msa0996340 | AT5G49190.2 | 56.710 | 231 | 100 | 0 | 1 | 231 | 565 | 795 | 3.29e-96 | 301 |
Msa0996340 | AT4G10120.4 | 32.984 | 191 | 116 | 4 | 1 | 188 | 335 | 516 | 1.41e-22 | 98.6 |
Msa0996340 | AT4G10120.5 | 32.984 | 191 | 116 | 4 | 1 | 188 | 308 | 489 | 1.67e-22 | 98.6 |
Msa0996340 | AT4G10120.2 | 32.984 | 191 | 116 | 4 | 1 | 188 | 509 | 690 | 2.07e-22 | 98.2 |
Msa0996340 | AT4G10120.3 | 32.984 | 191 | 116 | 4 | 1 | 188 | 509 | 690 | 2.07e-22 | 98.2 |
Msa0996340 | AT4G10120.1 | 32.984 | 191 | 116 | 4 | 1 | 188 | 509 | 690 | 2.07e-22 | 98.2 |
Msa0996340 | AT5G11110.1 | 29.717 | 212 | 129 | 7 | 1 | 203 | 484 | 684 | 2.62e-19 | 89.0 |
Msa0996340 | AT5G20280.1 | 30.583 | 206 | 123 | 7 | 1 | 197 | 482 | 676 | 5.31e-19 | 88.2 |
Msa0996340 | AT1G04920.1 | 28.821 | 229 | 132 | 7 | 1 | 206 | 490 | 710 | 3.26e-18 | 85.9 |
Msa0996340 | AT1G78800.1 | 26.203 | 187 | 121 | 5 | 3 | 186 | 217 | 389 | 1.01e-11 | 65.5 |
Find 61 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATTACCTCTCTAAGTATT+TGG | 0.124183 | 6_4:+74412469 | Msa0996340:CDS |
TTGAATATGGGATCAATTTA+TGG | 0.132045 | 6_4:+74411265 | Msa0996340:CDS |
TTCTGTTTCTTCTCTATCTT+TGG | 0.134203 | 6_4:-74410620 | None:intergenic |
CAAAGTGGTGATCTTTATTC+TGG | 0.182888 | 6_4:+74412404 | Msa0996340:CDS |
TGGGATCAATTTATGGGTTT+TGG | 0.205721 | 6_4:+74411272 | Msa0996340:CDS |
TGCAAACAAAGTGTTGAATA+TGG | 0.228861 | 6_4:+74411252 | Msa0996340:CDS |
GGTTCTTGAGGTACCTCTTT+AGG | 0.254366 | 6_4:-74411696 | None:intergenic |
ATTATAGTTGATGGTGTCTT+AGG | 0.255544 | 6_4:+74410874 | Msa0996340:CDS |
GAAACTATGTTCCAATGTTC+AGG | 0.294329 | 6_4:-74410973 | None:intergenic |
ATTGAAGATTATAAAACATT+TGG | 0.298630 | 6_4:-74411339 | None:intergenic |
CCACCATTGTATGAAGCTTT+TGG | 0.311053 | 6_4:+74410781 | Msa0996340:CDS |
GGATTACGTTGGTTGCTTCC+AGG | 0.317665 | 6_4:+74412425 | Msa0996340:CDS |
TTGGTAAATATTGTAATTGT+TGG | 0.320007 | 6_4:+74410574 | Msa0996340:CDS |
TTTCATATTGATCCTCATAA+TGG | 0.327462 | 6_4:+74410898 | Msa0996340:CDS |
GTCTTCAAAGAATCAATAAA+TGG | 0.327611 | 6_4:+74411004 | Msa0996340:CDS |
TGAGGTACCTCTTTAGGAAT+TGG | 0.346022 | 6_4:-74411690 | None:intergenic |
TGAATATGGGATCAATTTAT+GGG | 0.351676 | 6_4:+74411266 | Msa0996340:CDS |
TAATCTTCAATTTAGGAACT+TGG | 0.378334 | 6_4:+74411351 | Msa0996340:CDS |
ATTGATTCATCTCCATTATG+AGG | 0.383499 | 6_4:-74410910 | None:intergenic |
CATTACATTGTAGGCAAGAA+AGG | 0.403513 | 6_4:+74411665 | Msa0996340:intron |
ATGAAAGAATACAAACTTCA+AGG | 0.422507 | 6_4:+74410667 | Msa0996340:CDS |
GAACAAGCGACTAAGAAGTT+TGG | 0.433098 | 6_4:+74410555 | Msa0996340:CDS |
ATGAACATAAAAGTAATTCC+TGG | 0.436230 | 6_4:-74412443 | None:intergenic |
CCTTGGTTTGTTGCAAAAGT+TGG | 0.440752 | 6_4:-74410838 | None:intergenic |
GTAAATATTGTAATTGTTGG+AGG | 0.450524 | 6_4:+74410577 | Msa0996340:CDS |
TGGAACATAGTTTCTAAAGA+TGG | 0.454978 | 6_4:+74410982 | Msa0996340:CDS |
GCAAACAAAGTGTTGAATAT+GGG | 0.464065 | 6_4:+74411253 | Msa0996340:CDS |
AACTTCAAGGTCAGTTCAGA+TGG | 0.474531 | 6_4:+74410680 | Msa0996340:CDS |
AGAATTGTTGACATTGGTTG+AGG | 0.481731 | 6_4:-74411717 | None:intergenic |
AATGCTGCCAACCGGGTTTG+AGG | 0.497047 | 6_4:-74411801 | None:intergenic |
CGATGTATCGCTGATACAAA+AGG | 0.501900 | 6_4:+74410745 | Msa0996340:CDS |
AAGTTTGTATTCTTTCATCA+AGG | 0.514646 | 6_4:-74410662 | None:intergenic |
GTTGAACAAAGAACAAAAGT+TGG | 0.520029 | 6_4:+74411300 | Msa0996340:CDS |
CAGGGGTGAATCATCAAGTA+AGG | 0.524073 | 6_4:+74412367 | Msa0996340:intron |
CCAGCTGAAATTATAGTTGA+TGG | 0.524213 | 6_4:+74410865 | Msa0996340:CDS |
CCATCAACTATAATTTCAGC+TGG | 0.525318 | 6_4:-74410865 | None:intergenic |
TTGTGCTGCATCATGCCCCT+TGG | 0.530931 | 6_4:-74411763 | None:intergenic |
ATCTTTATTCTGGATTACGT+TGG | 0.533971 | 6_4:+74412414 | Msa0996340:CDS |
AAAGGTACCAATTCCTAAAG+AGG | 0.535265 | 6_4:+74411683 | Msa0996340:CDS |
GACATTGGTTGAGGTTCTTG+AGG | 0.537065 | 6_4:-74411708 | None:intergenic |
TCTTCGCGAACCACTCGACT+AGG | 0.546019 | 6_4:-74410534 | None:intergenic |
TCATCAAGTAAGGAACTAGC+TGG | 0.559863 | 6_4:+74412377 | Msa0996340:CDS |
AAAGCAGAAGCTACTTCCAA+GGG | 0.561938 | 6_4:+74411747 | Msa0996340:CDS |
AAAAGCAGAAGCTACTTCCA+AGG | 0.562076 | 6_4:+74411746 | Msa0996340:CDS |
AGGTCAGTTCAGATGGATTG+TGG | 0.570639 | 6_4:+74410687 | Msa0996340:CDS |
AATATTCCAAATACTTAGAG+AGG | 0.575973 | 6_4:-74412475 | None:intergenic |
CAAAGAACAAAAGTTGGCAA+AGG | 0.588238 | 6_4:+74411306 | Msa0996340:CDS |
GCAAGACTAATCCTGAACAT+TGG | 0.590830 | 6_4:+74410962 | Msa0996340:CDS |
TTGGCAAGAATTGTTGACAT+TGG | 0.593095 | 6_4:-74411723 | None:intergenic |
CCATAATCTTCTCAATGGCA+AGG | 0.595223 | 6_4:+74410485 | None:intergenic |
TTTGGAATATTTATTCACAC+GGG | 0.606329 | 6_4:+74412487 | Msa0996340:CDS |
GTCATTGAAGCAATGAACTG+TGG | 0.611801 | 6_4:+74410811 | Msa0996340:CDS |
TAATTTCAGCTGGACCACCT+TGG | 0.611946 | 6_4:-74410855 | None:intergenic |
ATTTGGAATATTTATTCACA+CGG | 0.612784 | 6_4:+74412486 | Msa0996340:CDS |
GAACTAGCTGGTAAACAAAG+TGG | 0.635858 | 6_4:+74412389 | Msa0996340:CDS |
AGACCAAAAGCTTCATACAA+TGG | 0.640055 | 6_4:-74410784 | None:intergenic |
CCAAAAGCTTCATACAATGG+TGG | 0.646093 | 6_4:-74410781 | None:intergenic |
ACATTAGTGGCCTAGTCGAG+TGG | 0.646877 | 6_4:+74410524 | Msa0996340:CDS |
AAACTGAAGTACCTCAAACC+CGG | 0.659346 | 6_4:+74411790 | Msa0996340:CDS |
CAAACTGATAGATATCGCAA+CGG | 0.721578 | 6_4:+74410712 | Msa0996340:CDS |
AAGCAGAAGCTACTTCCAAG+GGG | 0.733208 | 6_4:+74411748 | Msa0996340:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATATTTCAATAGTTATTTA+AGG | - | chr6_4:74411633-74411652 | None:intergenic | 10.0% |
!!! | AAATAACTATTGAAATATTT+TGG | + | chr6_4:74411634-74411653 | Msa0996340:intron | 10.0% |
!! | AATATTTCAATAGTTATTTA+AGG | - | chr6_4:74411633-74411652 | None:intergenic | 10.0% |
!!! | AAATAACTATTGAAATATTT+TGG | + | chr6_4:74411634-74411653 | Msa0996340:intron | 10.0% |
!! | TTTGAAAATGACAAATAAAT+AGG | + | chr6_4:74411089-74411108 | Msa0996340:intron | 15.0% |
!! | ATTGAAGATTATAAAACATT+TGG | - | chr6_4:74411342-74411361 | None:intergenic | 15.0% |
!!! | TGTTTTATAATCTTCAATTT+AGG | + | chr6_4:74411344-74411363 | Msa0996340:CDS | 15.0% |
!! | TTTGAAAATGACAAATAAAT+AGG | + | chr6_4:74411089-74411108 | Msa0996340:intron | 15.0% |
!! | ATTGAAGATTATAAAACATT+TGG | - | chr6_4:74411342-74411361 | None:intergenic | 15.0% |
!!! | TGTTTTATAATCTTCAATTT+AGG | + | chr6_4:74411344-74411363 | Msa0996340:CDS | 15.0% |
!! | TTGGTAAATATTGTAATTGT+TGG | + | chr6_4:74410574-74410593 | Msa0996340:CDS | 20.0% |
!! | TAGTTTAACAAACATTCATA+TGG | + | chr6_4:74411172-74411191 | Msa0996340:intron | 20.0% |
!! | GAAAAATTTCATTACATTGT+AGG | + | chr6_4:74411656-74411675 | Msa0996340:intron | 20.0% |
!! | TAACACCAAATATTCATTTA+GGG | - | chr6_4:74411884-74411903 | None:intergenic | 20.0% |
!! | TTAACACCAAATATTCATTT+AGG | - | chr6_4:74411885-74411904 | None:intergenic | 20.0% |
!! | ATTGCAAAATCATAATACTT+GGG | - | chr6_4:74411956-74411975 | None:intergenic | 20.0% |
!! | TATTGCAAAATCATAATACT+TGG | - | chr6_4:74411957-74411976 | None:intergenic | 20.0% |
!!! | GTATTATGATTTTGCAATAT+TGG | + | chr6_4:74411958-74411977 | Msa0996340:intron | 20.0% |
!!! | TTCTTCCATGTTAATTTTTT+TGG | - | chr6_4:74412247-74412266 | None:intergenic | 20.0% |
!!! | ATTTGGAATATTTATTCACA+CGG | + | chr6_4:74412486-74412505 | Msa0996340:CDS | 20.0% |
!! | TTGGTAAATATTGTAATTGT+TGG | + | chr6_4:74410574-74410593 | Msa0996340:CDS | 20.0% |
!! | TAGTTTAACAAACATTCATA+TGG | + | chr6_4:74411172-74411191 | Msa0996340:intron | 20.0% |
!! | GAAAAATTTCATTACATTGT+AGG | + | chr6_4:74411656-74411675 | Msa0996340:intron | 20.0% |
!! | TAACACCAAATATTCATTTA+GGG | - | chr6_4:74411884-74411903 | None:intergenic | 20.0% |
!! | TTAACACCAAATATTCATTT+AGG | - | chr6_4:74411885-74411904 | None:intergenic | 20.0% |
!! | ATTGCAAAATCATAATACTT+GGG | - | chr6_4:74411956-74411975 | None:intergenic | 20.0% |
!! | TATTGCAAAATCATAATACT+TGG | - | chr6_4:74411957-74411976 | None:intergenic | 20.0% |
!!! | GTATTATGATTTTGCAATAT+TGG | + | chr6_4:74411958-74411977 | Msa0996340:intron | 20.0% |
!!! | TTCTTCCATGTTAATTTTTT+TGG | - | chr6_4:74412247-74412266 | None:intergenic | 20.0% |
!!! | ATTTGGAATATTTATTCACA+CGG | + | chr6_4:74412486-74412505 | Msa0996340:CDS | 20.0% |
! | GTAAATATTGTAATTGTTGG+AGG | + | chr6_4:74410577-74410596 | Msa0996340:CDS | 25.0% |
! | AAGTTTGTATTCTTTCATCA+AGG | - | chr6_4:74410665-74410684 | None:intergenic | 25.0% |
! | ATGAAAGAATACAAACTTCA+AGG | + | chr6_4:74410667-74410686 | Msa0996340:CDS | 25.0% |
! | TTTCATATTGATCCTCATAA+TGG | + | chr6_4:74410898-74410917 | Msa0996340:CDS | 25.0% |
! | GTCTTCAAAGAATCAATAAA+TGG | + | chr6_4:74411004-74411023 | Msa0996340:CDS | 25.0% |
! | TTTATGGTTACGGATATTAT+CGG | + | chr6_4:74411038-74411057 | Msa0996340:intron | 25.0% |
! | TTAACAAACATTCATATGGT+TGG | + | chr6_4:74411176-74411195 | Msa0996340:intron | 25.0% |
! | TTGAATATGGGATCAATTTA+TGG | + | chr6_4:74411265-74411284 | Msa0996340:CDS | 25.0% |
! | TGAATATGGGATCAATTTAT+GGG | + | chr6_4:74411266-74411285 | Msa0996340:CDS | 25.0% |
! | TAATCTTCAATTTAGGAACT+TGG | + | chr6_4:74411351-74411370 | Msa0996340:CDS | 25.0% |
! | GTTAGTTGAGATTCAATTTA+GGG | - | chr6_4:74411831-74411850 | None:intergenic | 25.0% |
! | TGTTAGTTGAGATTCAATTT+AGG | - | chr6_4:74411832-74411851 | None:intergenic | 25.0% |
! | AGTTACCCTAAATGAATATT+TGG | + | chr6_4:74411876-74411895 | Msa0996340:intron | 25.0% |
! | AATTGTTATAATTATGCCCT+AGG | + | chr6_4:74412214-74412233 | Msa0996340:intron | 25.0% |
! | ATTGTTATAATTATGCCCTA+GGG | + | chr6_4:74412215-74412234 | Msa0996340:intron | 25.0% |
! | CTATGCCAAAAAAATTAACA+TGG | + | chr6_4:74412239-74412258 | Msa0996340:intron | 25.0% |
!!! | TTTGCATGTATTTTTGTCTT+TGG | + | chr6_4:74412339-74412358 | Msa0996340:intron | 25.0% |
! | ATGAACATAAAAGTAATTCC+TGG | - | chr6_4:74412446-74412465 | None:intergenic | 25.0% |
! | AATATTCCAAATACTTAGAG+AGG | - | chr6_4:74412478-74412497 | None:intergenic | 25.0% |
!! | TTTGGAATATTTATTCACAC+GGG | + | chr6_4:74412487-74412506 | Msa0996340:CDS | 25.0% |
! | GTAAATATTGTAATTGTTGG+AGG | + | chr6_4:74410577-74410596 | Msa0996340:CDS | 25.0% |
! | AAGTTTGTATTCTTTCATCA+AGG | - | chr6_4:74410665-74410684 | None:intergenic | 25.0% |
! | ATGAAAGAATACAAACTTCA+AGG | + | chr6_4:74410667-74410686 | Msa0996340:CDS | 25.0% |
! | TTTCATATTGATCCTCATAA+TGG | + | chr6_4:74410898-74410917 | Msa0996340:CDS | 25.0% |
! | GTCTTCAAAGAATCAATAAA+TGG | + | chr6_4:74411004-74411023 | Msa0996340:CDS | 25.0% |
! | TTTATGGTTACGGATATTAT+CGG | + | chr6_4:74411038-74411057 | Msa0996340:intron | 25.0% |
! | TTAACAAACATTCATATGGT+TGG | + | chr6_4:74411176-74411195 | Msa0996340:intron | 25.0% |
! | TTGAATATGGGATCAATTTA+TGG | + | chr6_4:74411265-74411284 | Msa0996340:CDS | 25.0% |
! | TGAATATGGGATCAATTTAT+GGG | + | chr6_4:74411266-74411285 | Msa0996340:CDS | 25.0% |
! | TAATCTTCAATTTAGGAACT+TGG | + | chr6_4:74411351-74411370 | Msa0996340:CDS | 25.0% |
! | GTTAGTTGAGATTCAATTTA+GGG | - | chr6_4:74411831-74411850 | None:intergenic | 25.0% |
! | TGTTAGTTGAGATTCAATTT+AGG | - | chr6_4:74411832-74411851 | None:intergenic | 25.0% |
! | AGTTACCCTAAATGAATATT+TGG | + | chr6_4:74411876-74411895 | Msa0996340:intron | 25.0% |
! | AATTGTTATAATTATGCCCT+AGG | + | chr6_4:74412214-74412233 | Msa0996340:intron | 25.0% |
! | ATTGTTATAATTATGCCCTA+GGG | + | chr6_4:74412215-74412234 | Msa0996340:intron | 25.0% |
! | CTATGCCAAAAAAATTAACA+TGG | + | chr6_4:74412239-74412258 | Msa0996340:intron | 25.0% |
!!! | TTTGCATGTATTTTTGTCTT+TGG | + | chr6_4:74412339-74412358 | Msa0996340:intron | 25.0% |
! | ATGAACATAAAAGTAATTCC+TGG | - | chr6_4:74412446-74412465 | None:intergenic | 25.0% |
! | AATATTCCAAATACTTAGAG+AGG | - | chr6_4:74412478-74412497 | None:intergenic | 25.0% |
!! | TTTGGAATATTTATTCACAC+GGG | + | chr6_4:74412487-74412506 | Msa0996340:CDS | 25.0% |
GACAAAGTGAAAAACATTAG+TGG | + | chr6_4:74410511-74410530 | Msa0996340:CDS | 30.0% | |
! | TCTCTATCTTTGGATTTTGA+AGG | - | chr6_4:74410613-74410632 | None:intergenic | 30.0% |
! | TTCTGTTTCTTCTCTATCTT+TGG | - | chr6_4:74410623-74410642 | None:intergenic | 30.0% |
!! | ATTATAGTTGATGGTGTCTT+AGG | + | chr6_4:74410874-74410893 | Msa0996340:CDS | 30.0% |
! | ATTGATTCATCTCCATTATG+AGG | - | chr6_4:74410913-74410932 | None:intergenic | 30.0% |
! | TGGAACATAGTTTCTAAAGA+TGG | + | chr6_4:74410982-74411001 | Msa0996340:CDS | 30.0% |
AATGGTACACTTCTGATTTA+TGG | + | chr6_4:74411022-74411041 | Msa0996340:intron | 30.0% | |
ACACTTCTGATTTATGGTTA+CGG | + | chr6_4:74411028-74411047 | Msa0996340:intron | 30.0% | |
TACGAAAGTGACAGTTAAAA+AGG | + | chr6_4:74411125-74411144 | Msa0996340:intron | 30.0% | |
! | GTTTTCTTTGTAGCTATACA+TGG | + | chr6_4:74411221-74411240 | Msa0996340:intron | 30.0% |
!! | TGCAAACAAAGTGTTGAATA+TGG | + | chr6_4:74411252-74411271 | Msa0996340:CDS | 30.0% |
!! | GCAAACAAAGTGTTGAATAT+GGG | + | chr6_4:74411253-74411272 | Msa0996340:CDS | 30.0% |
GTTGAACAAAGAACAAAAGT+TGG | + | chr6_4:74411300-74411319 | Msa0996340:CDS | 30.0% | |
! | ATTTTTGTCTTTGGATTTGC+AGG | + | chr6_4:74412348-74412367 | Msa0996340:intron | 30.0% |
! | TTTTTGTCTTTGGATTTGCA+GGG | + | chr6_4:74412349-74412368 | Msa0996340:intron | 30.0% |
ATCTTTATTCTGGATTACGT+TGG | + | chr6_4:74412414-74412433 | Msa0996340:CDS | 30.0% | |
TCATTACCTCTCTAAGTATT+TGG | + | chr6_4:74412469-74412488 | Msa0996340:CDS | 30.0% | |
GACAAAGTGAAAAACATTAG+TGG | + | chr6_4:74410511-74410530 | Msa0996340:CDS | 30.0% | |
! | TCTCTATCTTTGGATTTTGA+AGG | - | chr6_4:74410613-74410632 | None:intergenic | 30.0% |
! | TTCTGTTTCTTCTCTATCTT+TGG | - | chr6_4:74410623-74410642 | None:intergenic | 30.0% |
!! | ATTATAGTTGATGGTGTCTT+AGG | + | chr6_4:74410874-74410893 | Msa0996340:CDS | 30.0% |
! | ATTGATTCATCTCCATTATG+AGG | - | chr6_4:74410913-74410932 | None:intergenic | 30.0% |
! | TGGAACATAGTTTCTAAAGA+TGG | + | chr6_4:74410982-74411001 | Msa0996340:CDS | 30.0% |
AATGGTACACTTCTGATTTA+TGG | + | chr6_4:74411022-74411041 | Msa0996340:intron | 30.0% | |
ACACTTCTGATTTATGGTTA+CGG | + | chr6_4:74411028-74411047 | Msa0996340:intron | 30.0% | |
TACGAAAGTGACAGTTAAAA+AGG | + | chr6_4:74411125-74411144 | Msa0996340:intron | 30.0% | |
! | GTTTTCTTTGTAGCTATACA+TGG | + | chr6_4:74411221-74411240 | Msa0996340:intron | 30.0% |
!! | TGCAAACAAAGTGTTGAATA+TGG | + | chr6_4:74411252-74411271 | Msa0996340:CDS | 30.0% |
!! | GCAAACAAAGTGTTGAATAT+GGG | + | chr6_4:74411253-74411272 | Msa0996340:CDS | 30.0% |
GTTGAACAAAGAACAAAAGT+TGG | + | chr6_4:74411300-74411319 | Msa0996340:CDS | 30.0% | |
! | ATTTTTGTCTTTGGATTTGC+AGG | + | chr6_4:74412348-74412367 | Msa0996340:intron | 30.0% |
! | TTTTTGTCTTTGGATTTGCA+GGG | + | chr6_4:74412349-74412368 | Msa0996340:intron | 30.0% |
ATCTTTATTCTGGATTACGT+TGG | + | chr6_4:74412414-74412433 | Msa0996340:CDS | 30.0% | |
TCATTACCTCTCTAAGTATT+TGG | + | chr6_4:74412469-74412488 | Msa0996340:CDS | 30.0% | |
CAAACTGATAGATATCGCAA+CGG | + | chr6_4:74410712-74410731 | Msa0996340:CDS | 35.0% | |
! | CTTTTGTATCAGCGATACAT+CGG | - | chr6_4:74410747-74410766 | None:intergenic | 35.0% |
AGACCAAAAGCTTCATACAA+TGG | - | chr6_4:74410787-74410806 | None:intergenic | 35.0% | |
CCATCAACTATAATTTCAGC+TGG | - | chr6_4:74410868-74410887 | None:intergenic | 35.0% | |
CCAGCTGAAATTATAGTTGA+TGG | + | chr6_4:74410865-74410884 | Msa0996340:CDS | 35.0% | |
GAAACTATGTTCCAATGTTC+AGG | - | chr6_4:74410976-74410995 | None:intergenic | 35.0% | |
TGACAGTTAAAAAGGAACAG+AGG | + | chr6_4:74411133-74411152 | Msa0996340:intron | 35.0% | |
GACAGTTAAAAAGGAACAGA+GGG | + | chr6_4:74411134-74411153 | Msa0996340:intron | 35.0% | |
! | TGGGATCAATTTATGGGTTT+TGG | + | chr6_4:74411272-74411291 | Msa0996340:CDS | 35.0% |
CAAAGAACAAAAGTTGGCAA+AGG | + | chr6_4:74411306-74411325 | Msa0996340:CDS | 35.0% | |
CATTACATTGTAGGCAAGAA+AGG | + | chr6_4:74411665-74411684 | Msa0996340:intron | 35.0% | |
!! | AAAGGTACCAATTCCTAAAG+AGG | + | chr6_4:74411683-74411702 | Msa0996340:CDS | 35.0% |
! | AGAATTGTTGACATTGGTTG+AGG | - | chr6_4:74411720-74411739 | None:intergenic | 35.0% |
TTGGCAAGAATTGTTGACAT+TGG | - | chr6_4:74411726-74411745 | None:intergenic | 35.0% | |
AGTTGAGATTCAATTTAGGG+TGG | - | chr6_4:74411828-74411847 | None:intergenic | 35.0% | |
TTGAATCTCAACTAACACCA+AGG | + | chr6_4:74411835-74411854 | Msa0996340:intron | 35.0% | |
TTTGCATAAGTGACTTACCT+TGG | - | chr6_4:74411855-74411874 | None:intergenic | 35.0% | |
!!! | TTTTTTTGGCATAGTCCCTA+GGG | - | chr6_4:74412233-74412252 | None:intergenic | 35.0% |
!!! | ATTTTTTTGGCATAGTCCCT+AGG | - | chr6_4:74412234-74412253 | None:intergenic | 35.0% |
! | TTTTGTCTTTGGATTTGCAG+GGG | + | chr6_4:74412350-74412369 | Msa0996340:intron | 35.0% |
CAAAGTGGTGATCTTTATTC+TGG | + | chr6_4:74412404-74412423 | Msa0996340:CDS | 35.0% | |
CAAACTGATAGATATCGCAA+CGG | + | chr6_4:74410712-74410731 | Msa0996340:CDS | 35.0% | |
! | CTTTTGTATCAGCGATACAT+CGG | - | chr6_4:74410747-74410766 | None:intergenic | 35.0% |
AGACCAAAAGCTTCATACAA+TGG | - | chr6_4:74410787-74410806 | None:intergenic | 35.0% | |
CCATCAACTATAATTTCAGC+TGG | - | chr6_4:74410868-74410887 | None:intergenic | 35.0% | |
CCAGCTGAAATTATAGTTGA+TGG | + | chr6_4:74410865-74410884 | Msa0996340:CDS | 35.0% | |
GAAACTATGTTCCAATGTTC+AGG | - | chr6_4:74410976-74410995 | None:intergenic | 35.0% | |
TGACAGTTAAAAAGGAACAG+AGG | + | chr6_4:74411133-74411152 | Msa0996340:intron | 35.0% | |
GACAGTTAAAAAGGAACAGA+GGG | + | chr6_4:74411134-74411153 | Msa0996340:intron | 35.0% | |
! | TGGGATCAATTTATGGGTTT+TGG | + | chr6_4:74411272-74411291 | Msa0996340:CDS | 35.0% |
CAAAGAACAAAAGTTGGCAA+AGG | + | chr6_4:74411306-74411325 | Msa0996340:CDS | 35.0% | |
CATTACATTGTAGGCAAGAA+AGG | + | chr6_4:74411665-74411684 | Msa0996340:intron | 35.0% | |
!! | AAAGGTACCAATTCCTAAAG+AGG | + | chr6_4:74411683-74411702 | Msa0996340:CDS | 35.0% |
! | AGAATTGTTGACATTGGTTG+AGG | - | chr6_4:74411720-74411739 | None:intergenic | 35.0% |
TTGGCAAGAATTGTTGACAT+TGG | - | chr6_4:74411726-74411745 | None:intergenic | 35.0% | |
AGTTGAGATTCAATTTAGGG+TGG | - | chr6_4:74411828-74411847 | None:intergenic | 35.0% | |
TTGAATCTCAACTAACACCA+AGG | + | chr6_4:74411835-74411854 | Msa0996340:intron | 35.0% | |
TTTGCATAAGTGACTTACCT+TGG | - | chr6_4:74411855-74411874 | None:intergenic | 35.0% | |
!!! | TTTTTTTGGCATAGTCCCTA+GGG | - | chr6_4:74412233-74412252 | None:intergenic | 35.0% |
!!! | ATTTTTTTGGCATAGTCCCT+AGG | - | chr6_4:74412234-74412253 | None:intergenic | 35.0% |
! | TTTTGTCTTTGGATTTGCAG+GGG | + | chr6_4:74412350-74412369 | Msa0996340:intron | 35.0% |
CAAAGTGGTGATCTTTATTC+TGG | + | chr6_4:74412404-74412423 | Msa0996340:CDS | 35.0% | |
GAACAAGCGACTAAGAAGTT+TGG | + | chr6_4:74410555-74410574 | Msa0996340:CDS | 40.0% | |
AACTTCAAGGTCAGTTCAGA+TGG | + | chr6_4:74410680-74410699 | Msa0996340:CDS | 40.0% | |
CGATGTATCGCTGATACAAA+AGG | + | chr6_4:74410745-74410764 | Msa0996340:CDS | 40.0% | |
CCAAAAGCTTCATACAATGG+TGG | - | chr6_4:74410784-74410803 | None:intergenic | 40.0% | |
! | CCACCATTGTATGAAGCTTT+TGG | + | chr6_4:74410781-74410800 | Msa0996340:CDS | 40.0% |
GTCATTGAAGCAATGAACTG+TGG | + | chr6_4:74410811-74410830 | Msa0996340:CDS | 40.0% | |
!! | CCTTGGTTTGTTGCAAAAGT+TGG | - | chr6_4:74410841-74410860 | None:intergenic | 40.0% |
! | CCAACTTTTGCAACAAACCA+AGG | + | chr6_4:74410838-74410857 | Msa0996340:CDS | 40.0% |
! | ACTTTTGCAACAAACCAAGG+TGG | + | chr6_4:74410841-74410860 | Msa0996340:CDS | 40.0% |
GCAAGACTAATCCTGAACAT+TGG | + | chr6_4:74410962-74410981 | Msa0996340:CDS | 40.0% | |
! | TGAGGTACCTCTTTAGGAAT+TGG | - | chr6_4:74411693-74411712 | None:intergenic | 40.0% |
!!! | GGAAGTAGCTTCTGCTTTTT+TGG | - | chr6_4:74411745-74411764 | None:intergenic | 40.0% |
AAAAGCAGAAGCTACTTCCA+AGG | + | chr6_4:74411746-74411765 | Msa0996340:CDS | 40.0% | |
AAAGCAGAAGCTACTTCCAA+GGG | + | chr6_4:74411747-74411766 | Msa0996340:CDS | 40.0% | |
! | AAACTGAAGTACCTCAAACC+CGG | + | chr6_4:74411790-74411809 | Msa0996340:CDS | 40.0% |
AATAGCCTACATGACACTGA+CGG | - | chr6_4:74412086-74412105 | None:intergenic | 40.0% | |
TCATCAAGTAAGGAACTAGC+TGG | + | chr6_4:74412377-74412396 | Msa0996340:CDS | 40.0% | |
GAACTAGCTGGTAAACAAAG+TGG | + | chr6_4:74412389-74412408 | Msa0996340:CDS | 40.0% | |
GAACAAGCGACTAAGAAGTT+TGG | + | chr6_4:74410555-74410574 | Msa0996340:CDS | 40.0% | |
AACTTCAAGGTCAGTTCAGA+TGG | + | chr6_4:74410680-74410699 | Msa0996340:CDS | 40.0% | |
CGATGTATCGCTGATACAAA+AGG | + | chr6_4:74410745-74410764 | Msa0996340:CDS | 40.0% | |
CCAAAAGCTTCATACAATGG+TGG | - | chr6_4:74410784-74410803 | None:intergenic | 40.0% | |
! | CCACCATTGTATGAAGCTTT+TGG | + | chr6_4:74410781-74410800 | Msa0996340:CDS | 40.0% |
GTCATTGAAGCAATGAACTG+TGG | + | chr6_4:74410811-74410830 | Msa0996340:CDS | 40.0% | |
!! | CCTTGGTTTGTTGCAAAAGT+TGG | - | chr6_4:74410841-74410860 | None:intergenic | 40.0% |
! | CCAACTTTTGCAACAAACCA+AGG | + | chr6_4:74410838-74410857 | Msa0996340:CDS | 40.0% |
! | ACTTTTGCAACAAACCAAGG+TGG | + | chr6_4:74410841-74410860 | Msa0996340:CDS | 40.0% |
GCAAGACTAATCCTGAACAT+TGG | + | chr6_4:74410962-74410981 | Msa0996340:CDS | 40.0% | |
! | TGAGGTACCTCTTTAGGAAT+TGG | - | chr6_4:74411693-74411712 | None:intergenic | 40.0% |
!!! | GGAAGTAGCTTCTGCTTTTT+TGG | - | chr6_4:74411745-74411764 | None:intergenic | 40.0% |
AAAAGCAGAAGCTACTTCCA+AGG | + | chr6_4:74411746-74411765 | Msa0996340:CDS | 40.0% | |
AAAGCAGAAGCTACTTCCAA+GGG | + | chr6_4:74411747-74411766 | Msa0996340:CDS | 40.0% | |
! | AAACTGAAGTACCTCAAACC+CGG | + | chr6_4:74411790-74411809 | Msa0996340:CDS | 40.0% |
AATAGCCTACATGACACTGA+CGG | - | chr6_4:74412086-74412105 | None:intergenic | 40.0% | |
TCATCAAGTAAGGAACTAGC+TGG | + | chr6_4:74412377-74412396 | Msa0996340:CDS | 40.0% | |
GAACTAGCTGGTAAACAAAG+TGG | + | chr6_4:74412389-74412408 | Msa0996340:CDS | 40.0% | |
!! | AGGTCAGTTCAGATGGATTG+TGG | + | chr6_4:74410687-74410706 | Msa0996340:CDS | 45.0% |
TAATTTCAGCTGGACCACCT+TGG | - | chr6_4:74410858-74410877 | None:intergenic | 45.0% | |
! | GGTTCTTGAGGTACCTCTTT+AGG | - | chr6_4:74411699-74411718 | None:intergenic | 45.0% |
! | GACATTGGTTGAGGTTCTTG+AGG | - | chr6_4:74411711-74411730 | None:intergenic | 45.0% |
AAGCAGAAGCTACTTCCAAG+GGG | + | chr6_4:74411748-74411767 | Msa0996340:CDS | 45.0% | |
AAGATCCGTCAGTGTCATGT+AGG | + | chr6_4:74412078-74412097 | Msa0996340:intron | 45.0% | |
AACGACCTAGTTAGTGATCG+AGG | + | chr6_4:74412119-74412138 | Msa0996340:intron | 45.0% | |
ACGACCTAGTTAGTGATCGA+GGG | + | chr6_4:74412120-74412139 | Msa0996340:intron | 45.0% | |
ATGTCCCTCGATCACTAACT+AGG | - | chr6_4:74412127-74412146 | None:intergenic | 45.0% | |
GGGACATGATTGTCACAAGA+TGG | + | chr6_4:74412140-74412159 | Msa0996340:intron | 45.0% | |
CAGGGGTGAATCATCAAGTA+AGG | + | chr6_4:74412367-74412386 | Msa0996340:intron | 45.0% | |
!! | AGGTCAGTTCAGATGGATTG+TGG | + | chr6_4:74410687-74410706 | Msa0996340:CDS | 45.0% |
TAATTTCAGCTGGACCACCT+TGG | - | chr6_4:74410858-74410877 | None:intergenic | 45.0% | |
! | GGTTCTTGAGGTACCTCTTT+AGG | - | chr6_4:74411699-74411718 | None:intergenic | 45.0% |
! | GACATTGGTTGAGGTTCTTG+AGG | - | chr6_4:74411711-74411730 | None:intergenic | 45.0% |
AAGCAGAAGCTACTTCCAAG+GGG | + | chr6_4:74411748-74411767 | Msa0996340:CDS | 45.0% | |
AAGATCCGTCAGTGTCATGT+AGG | + | chr6_4:74412078-74412097 | Msa0996340:intron | 45.0% | |
AACGACCTAGTTAGTGATCG+AGG | + | chr6_4:74412119-74412138 | Msa0996340:intron | 45.0% | |
ACGACCTAGTTAGTGATCGA+GGG | + | chr6_4:74412120-74412139 | Msa0996340:intron | 45.0% | |
ATGTCCCTCGATCACTAACT+AGG | - | chr6_4:74412127-74412146 | None:intergenic | 45.0% | |
GGGACATGATTGTCACAAGA+TGG | + | chr6_4:74412140-74412159 | Msa0996340:intron | 45.0% | |
CAGGGGTGAATCATCAAGTA+AGG | + | chr6_4:74412367-74412386 | Msa0996340:intron | 45.0% | |
!!! | TTTTACAATATATAATAAAT+AGG | + | chr6_4:74411607-74411626 | Msa0996340:intron | 5.0% |
!!! | TTTTACAATATATAATAAAT+AGG | + | chr6_4:74411607-74411626 | Msa0996340:intron | 5.0% |
ACATTAGTGGCCTAGTCGAG+TGG | + | chr6_4:74410524-74410543 | Msa0996340:CDS | 50.0% | |
! | TGAAGTACCTCAAACCCGGT+TGG | + | chr6_4:74411794-74411813 | Msa0996340:intron | 50.0% |
! | GGATTACGTTGGTTGCTTCC+AGG | + | chr6_4:74412425-74412444 | Msa0996340:CDS | 50.0% |
ACATTAGTGGCCTAGTCGAG+TGG | + | chr6_4:74410524-74410543 | Msa0996340:CDS | 50.0% | |
! | TGAAGTACCTCAAACCCGGT+TGG | + | chr6_4:74411794-74411813 | Msa0996340:intron | 50.0% |
! | GGATTACGTTGGTTGCTTCC+AGG | + | chr6_4:74412425-74412444 | Msa0996340:CDS | 50.0% |
TCTTCGCGAACCACTCGACT+AGG | - | chr6_4:74410537-74410556 | None:intergenic | 55.0% | |
TTGTGCTGCATCATGCCCCT+TGG | - | chr6_4:74411766-74411785 | None:intergenic | 55.0% | |
AATGCTGCCAACCGGGTTTG+AGG | - | chr6_4:74411804-74411823 | None:intergenic | 55.0% | |
! | AGGGTGGTAATGCTGCCAAC+CGG | - | chr6_4:74411812-74411831 | None:intergenic | 55.0% |
TCTTCGCGAACCACTCGACT+AGG | - | chr6_4:74410537-74410556 | None:intergenic | 55.0% | |
TTGTGCTGCATCATGCCCCT+TGG | - | chr6_4:74411766-74411785 | None:intergenic | 55.0% | |
AATGCTGCCAACCGGGTTTG+AGG | - | chr6_4:74411804-74411823 | None:intergenic | 55.0% | |
! | AGGGTGGTAATGCTGCCAAC+CGG | - | chr6_4:74411812-74411831 | None:intergenic | 55.0% |
! | GGGTGGTAATGCTGCCAACC+GGG | - | chr6_4:74411811-74411830 | None:intergenic | 60.0% |
! | GGGTGGTAATGCTGCCAACC+GGG | - | chr6_4:74411811-74411830 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_4 | gene | 74410499 | 74412517 | 74410499 | ID=Msa0996340;Name=Msa0996340 |
chr6_4 | mRNA | 74410499 | 74412517 | 74410499 | ID=Msa0996340-mRNA-1;Parent=Msa0996340;Name=Msa0996340-mRNA-1;_AED=0.16;_eAED=0.22;_QI=0|0|0|1|1|1|4|0|315 |
chr6_4 | exon | 74410499 | 74411025 | 74410499 | ID=Msa0996340-mRNA-1:exon:13932;Parent=Msa0996340-mRNA-1 |
chr6_4 | exon | 74411234 | 74411372 | 74411234 | ID=Msa0996340-mRNA-1:exon:13933;Parent=Msa0996340-mRNA-1 |
chr6_4 | exon | 74411678 | 74411811 | 74411678 | ID=Msa0996340-mRNA-1:exon:13934;Parent=Msa0996340-mRNA-1 |
chr6_4 | exon | 74412370 | 74412517 | 74412370 | ID=Msa0996340-mRNA-1:exon:13935;Parent=Msa0996340-mRNA-1 |
chr6_4 | CDS | 74410499 | 74411025 | 74410499 | ID=Msa0996340-mRNA-1:cds;Parent=Msa0996340-mRNA-1 |
chr6_4 | CDS | 74411234 | 74411372 | 74411234 | ID=Msa0996340-mRNA-1:cds;Parent=Msa0996340-mRNA-1 |
chr6_4 | CDS | 74411678 | 74411811 | 74411678 | ID=Msa0996340-mRNA-1:cds;Parent=Msa0996340-mRNA-1 |
chr6_4 | CDS | 74412370 | 74412517 | 74412370 | ID=Msa0996340-mRNA-1:cds;Parent=Msa0996340-mRNA-1 |
Gene Sequence |
Protein sequence |