Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0996540 | XP_013455733.1 | 79.167 | 240 | 40 | 4 | 1 | 236 | 1 | 234 | 5.85e-121 | 353 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0996540 | sp|O64703|AGL29_ARATH | 31.013 | 158 | 100 | 5 | 9 | 159 | 2 | 157 | 5.58e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0996540 | A0A072UJ33 | 79.167 | 240 | 40 | 4 | 1 | 236 | 1 | 234 | 2.79e-121 | 353 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0996540 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0291710 | Msa0996540 | 0.838370 | 2.994846e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0996540 | MtrunA17_Chr4g0025531 | 79.167 | 240 | 40 | 4 | 1 | 236 | 1 | 234 | 5.38e-125 | 353 |
| Msa0996540 | MtrunA17_Chr3g0135891 | 47.482 | 139 | 48 | 5 | 106 | 228 | 16 | 145 | 5.00e-30 | 109 |
| Msa0996540 | MtrunA17_Chr1g0149391 | 45.588 | 68 | 37 | 0 | 5 | 72 | 5 | 72 | 1.24e-15 | 73.6 |
| Msa0996540 | MtrunA17_Chr1g0206991 | 33.824 | 136 | 80 | 3 | 1 | 126 | 1 | 136 | 1.48e-15 | 72.4 |
| Msa0996540 | MtrunA17_Chr8g0355091 | 33.577 | 137 | 81 | 3 | 1 | 127 | 1 | 137 | 1.60e-15 | 73.2 |
| Msa0996540 | MtrunA17_Chr2g0317481 | 38.462 | 91 | 53 | 1 | 1 | 88 | 1 | 91 | 2.17e-15 | 72.8 |
| Msa0996540 | MtrunA17_Chr2g0317451 | 38.462 | 91 | 53 | 1 | 1 | 88 | 1 | 91 | 2.45e-15 | 72.8 |
| Msa0996540 | MtrunA17_Chr1g0208581 | 43.056 | 72 | 41 | 0 | 1 | 72 | 1 | 72 | 2.84e-15 | 72.4 |
| Msa0996540 | MtrunA17_Chr1g0206701 | 45.588 | 68 | 37 | 0 | 5 | 72 | 5 | 72 | 2.91e-15 | 72.4 |
| Msa0996540 | MtrunA17_Chr3g0099411 | 45.588 | 68 | 37 | 0 | 5 | 72 | 5 | 72 | 3.04e-15 | 72.0 |
| Msa0996540 | MtrunA17_Chr3g0099421 | 44.595 | 74 | 41 | 0 | 5 | 78 | 30 | 103 | 3.36e-15 | 72.8 |
| Msa0996540 | MtrunA17_Chr1g0206721 | 45.588 | 68 | 37 | 0 | 5 | 72 | 5 | 72 | 4.67e-15 | 72.0 |
| Msa0996540 | MtrunA17_Chr3g0089141 | 42.647 | 68 | 39 | 0 | 5 | 72 | 5 | 72 | 5.21e-15 | 71.6 |
| Msa0996540 | MtrunA17_Chr1g0208561 | 42.647 | 68 | 39 | 0 | 5 | 72 | 5 | 72 | 5.43e-15 | 71.6 |
| Msa0996540 | MtrunA17_Chr2g0292791 | 45.588 | 68 | 37 | 0 | 5 | 72 | 5 | 72 | 7.13e-15 | 71.6 |
| Msa0996540 | MtrunA17_Chr3g0119901 | 43.590 | 78 | 44 | 0 | 1 | 78 | 1 | 78 | 8.06e-15 | 70.9 |
| Msa0996540 | MtrunA17_Chr5g0422941 | 26.289 | 194 | 117 | 6 | 5 | 187 | 5 | 183 | 1.06e-14 | 70.9 |
| Msa0996540 | MtrunA17_Chr3g0085241 | 44.595 | 74 | 41 | 0 | 4 | 77 | 36 | 109 | 1.11e-14 | 71.2 |
| Msa0996540 | MtrunA17_Chr5g0422421 | 42.647 | 68 | 39 | 0 | 5 | 72 | 5 | 72 | 1.37e-14 | 70.9 |
| Msa0996540 | MtrunA17_Chr1g0188671 | 40.506 | 79 | 47 | 0 | 1 | 79 | 39 | 117 | 1.49e-14 | 71.2 |
| Msa0996540 | MtrunA17_Chr4g0052061 | 34.314 | 102 | 63 | 1 | 9 | 106 | 2 | 103 | 2.97e-14 | 68.2 |
| Msa0996540 | MtrunA17_Chr8g0379021 | 28.916 | 166 | 101 | 3 | 4 | 159 | 7 | 165 | 4.81e-14 | 68.2 |
| Msa0996540 | MtrunA17_Chr5g0419601 | 40.260 | 77 | 46 | 0 | 1 | 77 | 1 | 77 | 6.29e-14 | 68.9 |
| Msa0996540 | MtrunA17_Chr2g0325971 | 40.278 | 72 | 43 | 0 | 1 | 72 | 1 | 72 | 1.78e-13 | 67.4 |
| Msa0996540 | MtrunA17_Chr4g0052081 | 38.571 | 70 | 43 | 0 | 9 | 78 | 2 | 71 | 1.81e-13 | 66.6 |
| Msa0996540 | MtrunA17_Chr2g0300421 | 35.897 | 78 | 50 | 0 | 1 | 78 | 1 | 78 | 3.38e-13 | 65.9 |
| Msa0996540 | MtrunA17_Chr3g0089151 | 37.079 | 89 | 52 | 1 | 1 | 85 | 1 | 89 | 3.69e-13 | 64.7 |
| Msa0996540 | MtrunA17_Chr1g0187361 | 30.357 | 112 | 65 | 1 | 5 | 116 | 5 | 103 | 4.49e-13 | 66.6 |
| Msa0996540 | MtrunA17_Chr2g0333981 | 25.625 | 160 | 112 | 2 | 4 | 158 | 7 | 164 | 7.30e-13 | 64.7 |
| Msa0996540 | MtrunA17_Chr2g0300441 | 28.205 | 117 | 71 | 1 | 5 | 121 | 5 | 108 | 8.13e-13 | 65.9 |
| Msa0996540 | MtrunA17_Chr3g0111841 | 44.828 | 58 | 32 | 0 | 15 | 72 | 2 | 59 | 5.59e-12 | 59.7 |
| Msa0996540 | MtrunA17_Chr8g0376821 | 33.333 | 72 | 48 | 0 | 9 | 80 | 2 | 73 | 2.82e-11 | 60.5 |
| Msa0996540 | MtrunA17_Chr1g0169761 | 33.333 | 72 | 48 | 0 | 9 | 80 | 2 | 73 | 5.67e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0996540 | AT4G36590.1 | 46.914 | 81 | 42 | 1 | 5 | 84 | 3 | 83 | 1.49e-17 | 79.3 |
| Msa0996540 | AT1G29962.1 | 43.750 | 80 | 44 | 1 | 1 | 80 | 1 | 79 | 5.59e-16 | 73.9 |
| Msa0996540 | AT2G34440.1 | 31.013 | 158 | 100 | 5 | 9 | 159 | 2 | 157 | 5.67e-16 | 73.6 |
| Msa0996540 | AT2G24840.1 | 40.000 | 80 | 48 | 0 | 7 | 86 | 61 | 140 | 2.09e-14 | 70.9 |
| Msa0996540 | AT5G60440.1 | 41.333 | 75 | 44 | 0 | 5 | 79 | 3 | 77 | 2.69e-14 | 71.2 |
| Msa0996540 | AT1G28460.1 | 28.649 | 185 | 108 | 5 | 1 | 167 | 1 | 179 | 1.08e-13 | 67.4 |
| Msa0996540 | AT1G01530.1 | 33.645 | 107 | 67 | 1 | 5 | 107 | 3 | 109 | 8.60e-13 | 66.2 |
| Msa0996540 | AT1G28450.1 | 38.750 | 80 | 48 | 1 | 1 | 80 | 1 | 79 | 2.12e-11 | 61.2 |
| Msa0996540 | AT3G66656.1 | 40.000 | 65 | 39 | 0 | 9 | 73 | 2 | 66 | 2.18e-11 | 61.2 |
| Msa0996540 | AT3G04100.1 | 36.232 | 69 | 44 | 0 | 5 | 73 | 10 | 78 | 3.32e-11 | 61.2 |
Find 34 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGAGTTAACAACACTTTC+AGG | 0.202264 | 6_4:+74837550 | Msa0996540:CDS |
| TTGAAGATGTTGGAAAGTTC+TGG | 0.270990 | 6_4:+74837781 | Msa0996540:CDS |
| AACAACAAAGATCATGAAAT+TGG | 0.282996 | 6_4:+74838122 | Msa0996540:CDS |
| TTTCCTCTTGATGATCTCTT+TGG | 0.311240 | 6_4:-74837439 | None:intergenic |
| ACACAAGGAGTCAACCTTAT+TGG | 0.323352 | 6_4:+74838466 | Msa0996540:CDS |
| ATCCTCCGCTTGCACCAATA+AGG | 0.357163 | 6_4:-74838480 | None:intergenic |
| TGTTGGAAAGTTCTGGATAT+TGG | 0.391346 | 6_4:+74837788 | Msa0996540:CDS |
| TTTATTTGTGACAGCAACTA+AGG | 0.402905 | 6_4:-74837872 | None:intergenic |
| ATTCTCATGCTTTCTCCAAC+GGG | 0.403336 | 6_4:+74837586 | Msa0996540:CDS |
| TTTGTTATAGATTCAGAAGA+TGG | 0.410640 | 6_4:-74837631 | None:intergenic |
| CCTCTTGATGATCTCTTTGG+CGG | 0.432589 | 6_4:-74837436 | None:intergenic |
| GCATTTACAACGAGAAAGTC+TGG | 0.455029 | 6_4:+74837511 | Msa0996540:CDS |
| CTGAGTTAACAACACTTTCA+GGG | 0.482866 | 6_4:+74837551 | Msa0996540:CDS |
| TATTCTCATGCTTTCTCCAA+CGG | 0.502164 | 6_4:+74837585 | Msa0996540:CDS |
| TGATCTAAAAGGTAAAGGTA+TGG | 0.508855 | 6_4:+74838417 | Msa0996540:intron |
| AACAACACTTTCAGGGGCCT+CGG | 0.519069 | 6_4:+74837558 | Msa0996540:CDS |
| TGAAAATTCTTCAATAGAAG+AGG | 0.523022 | 6_4:+74837669 | Msa0996540:CDS |
| AAGAGGAAGATGATAAAAGC+TGG | 0.551807 | 6_4:+74837818 | Msa0996540:CDS |
| GACTCCATTCAGTTCCTCGA+TGG | 0.554069 | 6_4:-74838069 | None:intergenic |
| TCTACCATCGAGGAACTGAA+TGG | 0.572587 | 6_4:+74838065 | Msa0996540:CDS |
| TGGATATTGGTCAATTCAAG+AGG | 0.585196 | 6_4:+74837801 | Msa0996540:CDS |
| GTCAACCTTATTGGTGCAAG+CGG | 0.586884 | 6_4:+74838475 | Msa0996540:CDS |
| AACCTTATTGGTGCAAGCGG+AGG | 0.596051 | 6_4:+74838478 | Msa0996540:CDS |
| TGAGTTAACAACACTTTCAG+GGG | 0.607847 | 6_4:+74837552 | Msa0996540:CDS |
| CCGCCAAAGAGATCATCAAG+AGG | 0.651296 | 6_4:+74837436 | Msa0996540:CDS |
| TGTAGTAATTTCTACCATCG+AGG | 0.654680 | 6_4:+74838055 | Msa0996540:intron |
| TGAAAGTGTTGTTAACTCAG+AGG | 0.669188 | 6_4:-74837548 | None:intergenic |
| GGAGGAGATCTTAACCCTCG+TGG | 0.672202 | 6_4:+74837919 | Msa0996540:CDS |
| GCAAGCGGAGGATATGAAAG+TGG | 0.676676 | 6_4:+74838490 | Msa0996540:CDS |
| TTTGGATGAAAAGCATGCTG+CGG | 0.687787 | 6_4:+74837741 | Msa0996540:CDS |
| TCTCATGATATAGAAACACA+AGG | 0.726046 | 6_4:+74838451 | Msa0996540:CDS |
| AAGCATGAGAATATCAACCG+AGG | 0.729998 | 6_4:-74837575 | None:intergenic |
| AAGATGTACACATACCACGA+GGG | 0.757349 | 6_4:-74837933 | None:intergenic |
| AAAGTCTGGAATTTACAACA+AGG | 0.757794 | 6_4:+74837525 | Msa0996540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAATAATTAGACAAAA+AGG | - | chr6_4:74838016-74838035 | None:intergenic | 10.0% |
| !!! | TTTAAAATAATTAGACAAAA+AGG | - | chr6_4:74838016-74838035 | None:intergenic | 10.0% |
| !!! | TGAAAAAAATGATGATTTTT+TGG | + | chr6_4:74837723-74837742 | Msa0996540:CDS | 15.0% |
| !! | ATAAATAAAGTCTTGAAAAA+TGG | + | chr6_4:74837898-74837917 | Msa0996540:CDS | 15.0% |
| !! | AAAAACAAAAAATTAAACAC+AGG | - | chr6_4:74838168-74838187 | None:intergenic | 15.0% |
| !!! | TGAAAAAAATGATGATTTTT+TGG | + | chr6_4:74837723-74837742 | Msa0996540:CDS | 15.0% |
| !! | ATAAATAAAGTCTTGAAAAA+TGG | + | chr6_4:74837898-74837917 | Msa0996540:CDS | 15.0% |
| !! | AAAAACAAAAAATTAAACAC+AGG | - | chr6_4:74838168-74838187 | None:intergenic | 15.0% |
| !!! | TCATTTTGCTGTATAATATT+CGG | - | chr6_4:74837706-74837725 | None:intergenic | 20.0% |
| !! | AAAAAATTAAACACAGGAAT+GGG | - | chr6_4:74838162-74838181 | None:intergenic | 20.0% |
| !! | TCTTCTTAATTTCTATTACT+AGG | + | chr6_4:74838310-74838329 | Msa0996540:intron | 20.0% |
| !!! | TTCAATCTTTTTGATCTAAA+AGG | + | chr6_4:74838406-74838425 | Msa0996540:intron | 20.0% |
| !!! | TCATTTTGCTGTATAATATT+CGG | - | chr6_4:74837706-74837725 | None:intergenic | 20.0% |
| !! | AAAAAATTAAACACAGGAAT+GGG | - | chr6_4:74838162-74838181 | None:intergenic | 20.0% |
| !! | TCTTCTTAATTTCTATTACT+AGG | + | chr6_4:74838310-74838329 | Msa0996540:intron | 20.0% |
| !!! | TTCAATCTTTTTGATCTAAA+AGG | + | chr6_4:74838406-74838425 | Msa0996540:intron | 20.0% |
| ! | ATCAAGAGGAAAACAAAAAT+TGG | + | chr6_4:74837450-74837469 | Msa0996540:CDS | 25.0% |
| !! | TTTGTTATAGATTCAGAAGA+TGG | - | chr6_4:74837634-74837653 | None:intergenic | 25.0% |
| ! | TGAAAATTCTTCAATAGAAG+AGG | + | chr6_4:74837669-74837688 | Msa0996540:CDS | 25.0% |
| ! | ACGTAAAAATTTGAAGATGT+TGG | + | chr6_4:74837771-74837790 | Msa0996540:CDS | 25.0% |
| ! | AATAAAGTCTTGAAAAATGG+AGG | + | chr6_4:74837901-74837920 | Msa0996540:CDS | 25.0% |
| ! | AACAACAAAGATCATGAAAT+TGG | + | chr6_4:74838122-74838141 | Msa0996540:CDS | 25.0% |
| ! | CAAAAAATTAAACACAGGAA+TGG | - | chr6_4:74838163-74838182 | None:intergenic | 25.0% |
| ! | AAACTTAAATGGTAAAAGCT+GGG | - | chr6_4:74838262-74838281 | None:intergenic | 25.0% |
| !! | TACCATTTAAGTTTCACTTA+TGG | + | chr6_4:74838268-74838287 | Msa0996540:intron | 25.0% |
| !! | ACCATTTAAGTTTCACTTAT+GGG | + | chr6_4:74838269-74838288 | Msa0996540:intron | 25.0% |
| ! | AAAAAGATTGAATCCATGAA+AGG | - | chr6_4:74838398-74838417 | None:intergenic | 25.0% |
| !! | CTTTTTGATCTAAAAGGTAA+AGG | + | chr6_4:74838412-74838431 | Msa0996540:intron | 25.0% |
| ! | ATCAAGAGGAAAACAAAAAT+TGG | + | chr6_4:74837450-74837469 | Msa0996540:CDS | 25.0% |
| !! | TTTGTTATAGATTCAGAAGA+TGG | - | chr6_4:74837634-74837653 | None:intergenic | 25.0% |
| ! | TGAAAATTCTTCAATAGAAG+AGG | + | chr6_4:74837669-74837688 | Msa0996540:CDS | 25.0% |
| ! | ACGTAAAAATTTGAAGATGT+TGG | + | chr6_4:74837771-74837790 | Msa0996540:CDS | 25.0% |
| ! | AATAAAGTCTTGAAAAATGG+AGG | + | chr6_4:74837901-74837920 | Msa0996540:CDS | 25.0% |
| ! | AACAACAAAGATCATGAAAT+TGG | + | chr6_4:74838122-74838141 | Msa0996540:CDS | 25.0% |
| ! | CAAAAAATTAAACACAGGAA+TGG | - | chr6_4:74838163-74838182 | None:intergenic | 25.0% |
| ! | AAACTTAAATGGTAAAAGCT+GGG | - | chr6_4:74838262-74838281 | None:intergenic | 25.0% |
| !! | TACCATTTAAGTTTCACTTA+TGG | + | chr6_4:74838268-74838287 | Msa0996540:intron | 25.0% |
| !! | ACCATTTAAGTTTCACTTAT+GGG | + | chr6_4:74838269-74838288 | Msa0996540:intron | 25.0% |
| ! | AAAAAGATTGAATCCATGAA+AGG | - | chr6_4:74838398-74838417 | None:intergenic | 25.0% |
| !! | CTTTTTGATCTAAAAGGTAA+AGG | + | chr6_4:74838412-74838431 | Msa0996540:intron | 25.0% |
| ! | AAAGTCTGGAATTTACAACA+AGG | + | chr6_4:74837525-74837544 | Msa0996540:CDS | 30.0% |
| ! | GATGGTTTTCCATAACAAAA+TGG | - | chr6_4:74837616-74837635 | None:intergenic | 30.0% |
| TTTATTTGTGACAGCAACTA+AGG | - | chr6_4:74837875-74837894 | None:intergenic | 30.0% | |
| !! | AAATCCTGCTTATGTTTTTG+AGG | + | chr6_4:74838097-74838116 | Msa0996540:CDS | 30.0% |
| ! | TTTTAGACAAGAGATGTTGT+TGG | + | chr6_4:74838226-74838245 | Msa0996540:intron | 30.0% |
| GAAACTTAAATGGTAAAAGC+TGG | - | chr6_4:74838263-74838282 | None:intergenic | 30.0% | |
| ! | CCATTTAAGTTTCACTTATG+GGG | + | chr6_4:74838270-74838289 | Msa0996540:intron | 30.0% |
| TATGTATTGTCTTCCTTTCA+TGG | + | chr6_4:74838382-74838401 | Msa0996540:intron | 30.0% | |
| TGATCTAAAAGGTAAAGGTA+TGG | + | chr6_4:74838417-74838436 | Msa0996540:intron | 30.0% | |
| TCTCATGATATAGAAACACA+AGG | + | chr6_4:74838451-74838470 | Msa0996540:CDS | 30.0% | |
| ! | AAAGTCTGGAATTTACAACA+AGG | + | chr6_4:74837525-74837544 | Msa0996540:CDS | 30.0% |
| ! | GATGGTTTTCCATAACAAAA+TGG | - | chr6_4:74837616-74837635 | None:intergenic | 30.0% |
| TTTATTTGTGACAGCAACTA+AGG | - | chr6_4:74837875-74837894 | None:intergenic | 30.0% | |
| !! | AAATCCTGCTTATGTTTTTG+AGG | + | chr6_4:74838097-74838116 | Msa0996540:CDS | 30.0% |
| ! | TTTTAGACAAGAGATGTTGT+TGG | + | chr6_4:74838226-74838245 | Msa0996540:intron | 30.0% |
| GAAACTTAAATGGTAAAAGC+TGG | - | chr6_4:74838263-74838282 | None:intergenic | 30.0% | |
| ! | CCATTTAAGTTTCACTTATG+GGG | + | chr6_4:74838270-74838289 | Msa0996540:intron | 30.0% |
| TATGTATTGTCTTCCTTTCA+TGG | + | chr6_4:74838382-74838401 | Msa0996540:intron | 30.0% | |
| TGATCTAAAAGGTAAAGGTA+TGG | + | chr6_4:74838417-74838436 | Msa0996540:intron | 30.0% | |
| TCTCATGATATAGAAACACA+AGG | + | chr6_4:74838451-74838470 | Msa0996540:CDS | 30.0% | |
| ! | TTTCCTCTTGATGATCTCTT+TGG | - | chr6_4:74837442-74837461 | None:intergenic | 35.0% |
| !! | TGAAAGTGTTGTTAACTCAG+AGG | - | chr6_4:74837551-74837570 | None:intergenic | 35.0% |
| TCTGAGTTAACAACACTTTC+AGG | + | chr6_4:74837550-74837569 | Msa0996540:CDS | 35.0% | |
| CTGAGTTAACAACACTTTCA+GGG | + | chr6_4:74837551-74837570 | Msa0996540:CDS | 35.0% | |
| TGAGTTAACAACACTTTCAG+GGG | + | chr6_4:74837552-74837571 | Msa0996540:CDS | 35.0% | |
| TATTCTCATGCTTTCTCCAA+CGG | + | chr6_4:74837585-74837604 | Msa0996540:CDS | 35.0% | |
| ! | TAACAAAATGGTTTTCCCGT+TGG | - | chr6_4:74837604-74837623 | None:intergenic | 35.0% |
| ! | ACGGGAAAACCATTTTGTTA+TGG | + | chr6_4:74837604-74837623 | Msa0996540:CDS | 35.0% |
| TTGAAGATGTTGGAAAGTTC+TGG | + | chr6_4:74837781-74837800 | Msa0996540:CDS | 35.0% | |
| !! | TGTTGGAAAGTTCTGGATAT+TGG | + | chr6_4:74837788-74837807 | Msa0996540:CDS | 35.0% |
| TGGATATTGGTCAATTCAAG+AGG | + | chr6_4:74837801-74837820 | Msa0996540:CDS | 35.0% | |
| AAGAGGAAGATGATAAAAGC+TGG | + | chr6_4:74837818-74837837 | Msa0996540:CDS | 35.0% | |
| TGTAGTAATTTCTACCATCG+AGG | + | chr6_4:74838055-74838074 | Msa0996540:intron | 35.0% | |
| TTGTCCTCAAAAACATAAGC+AGG | - | chr6_4:74838104-74838123 | None:intergenic | 35.0% | |
| CCCCATAAGTGAAACTTAAA+TGG | - | chr6_4:74838273-74838292 | None:intergenic | 35.0% | |
| ! | TTTCCTCTTGATGATCTCTT+TGG | - | chr6_4:74837442-74837461 | None:intergenic | 35.0% |
| !! | TGAAAGTGTTGTTAACTCAG+AGG | - | chr6_4:74837551-74837570 | None:intergenic | 35.0% |
| TCTGAGTTAACAACACTTTC+AGG | + | chr6_4:74837550-74837569 | Msa0996540:CDS | 35.0% | |
| CTGAGTTAACAACACTTTCA+GGG | + | chr6_4:74837551-74837570 | Msa0996540:CDS | 35.0% | |
| TGAGTTAACAACACTTTCAG+GGG | + | chr6_4:74837552-74837571 | Msa0996540:CDS | 35.0% | |
| TATTCTCATGCTTTCTCCAA+CGG | + | chr6_4:74837585-74837604 | Msa0996540:CDS | 35.0% | |
| ! | TAACAAAATGGTTTTCCCGT+TGG | - | chr6_4:74837604-74837623 | None:intergenic | 35.0% |
| ! | ACGGGAAAACCATTTTGTTA+TGG | + | chr6_4:74837604-74837623 | Msa0996540:CDS | 35.0% |
| TTGAAGATGTTGGAAAGTTC+TGG | + | chr6_4:74837781-74837800 | Msa0996540:CDS | 35.0% | |
| !! | TGTTGGAAAGTTCTGGATAT+TGG | + | chr6_4:74837788-74837807 | Msa0996540:CDS | 35.0% |
| TGGATATTGGTCAATTCAAG+AGG | + | chr6_4:74837801-74837820 | Msa0996540:CDS | 35.0% | |
| AAGAGGAAGATGATAAAAGC+TGG | + | chr6_4:74837818-74837837 | Msa0996540:CDS | 35.0% | |
| TGTAGTAATTTCTACCATCG+AGG | + | chr6_4:74838055-74838074 | Msa0996540:intron | 35.0% | |
| TTGTCCTCAAAAACATAAGC+AGG | - | chr6_4:74838104-74838123 | None:intergenic | 35.0% | |
| CCCCATAAGTGAAACTTAAA+TGG | - | chr6_4:74838273-74838292 | None:intergenic | 35.0% | |
| GCATTTACAACGAGAAAGTC+TGG | + | chr6_4:74837511-74837530 | Msa0996540:CDS | 40.0% | |
| AAGCATGAGAATATCAACCG+AGG | - | chr6_4:74837578-74837597 | None:intergenic | 40.0% | |
| ATTCTCATGCTTTCTCCAAC+GGG | + | chr6_4:74837586-74837605 | Msa0996540:CDS | 40.0% | |
| ! | TTTGGATGAAAAGCATGCTG+CGG | + | chr6_4:74837741-74837760 | Msa0996540:CDS | 40.0% |
| AAGATGTACACATACCACGA+GGG | - | chr6_4:74837936-74837955 | None:intergenic | 40.0% | |
| ACACAAGGAGTCAACCTTAT+TGG | + | chr6_4:74838466-74838485 | Msa0996540:CDS | 40.0% | |
| GCATTTACAACGAGAAAGTC+TGG | + | chr6_4:74837511-74837530 | Msa0996540:CDS | 40.0% | |
| AAGCATGAGAATATCAACCG+AGG | - | chr6_4:74837578-74837597 | None:intergenic | 40.0% | |
| ATTCTCATGCTTTCTCCAAC+GGG | + | chr6_4:74837586-74837605 | Msa0996540:CDS | 40.0% | |
| ! | TTTGGATGAAAAGCATGCTG+CGG | + | chr6_4:74837741-74837760 | Msa0996540:CDS | 40.0% |
| AAGATGTACACATACCACGA+GGG | - | chr6_4:74837936-74837955 | None:intergenic | 40.0% | |
| ACACAAGGAGTCAACCTTAT+TGG | + | chr6_4:74838466-74838485 | Msa0996540:CDS | 40.0% | |
| ! | CCTCTTGATGATCTCTTTGG+CGG | - | chr6_4:74837439-74837458 | None:intergenic | 45.0% |
| GAAGATGTACACATACCACG+AGG | - | chr6_4:74837937-74837956 | None:intergenic | 45.0% | |
| TCTACCATCGAGGAACTGAA+TGG | + | chr6_4:74838065-74838084 | Msa0996540:CDS | 45.0% | |
| GTCAACCTTATTGGTGCAAG+CGG | + | chr6_4:74838475-74838494 | Msa0996540:CDS | 45.0% | |
| ! | CCTCTTGATGATCTCTTTGG+CGG | - | chr6_4:74837439-74837458 | None:intergenic | 45.0% |
| GAAGATGTACACATACCACG+AGG | - | chr6_4:74837937-74837956 | None:intergenic | 45.0% | |
| TCTACCATCGAGGAACTGAA+TGG | + | chr6_4:74838065-74838084 | Msa0996540:CDS | 45.0% | |
| GTCAACCTTATTGGTGCAAG+CGG | + | chr6_4:74838475-74838494 | Msa0996540:CDS | 45.0% | |
| CCGCCAAAGAGATCATCAAG+AGG | + | chr6_4:74837436-74837455 | Msa0996540:CDS | 50.0% | |
| AACAACACTTTCAGGGGCCT+CGG | + | chr6_4:74837558-74837577 | Msa0996540:CDS | 50.0% | |
| GACTCCATTCAGTTCCTCGA+TGG | - | chr6_4:74838072-74838091 | None:intergenic | 50.0% | |
| AACCTTATTGGTGCAAGCGG+AGG | + | chr6_4:74838478-74838497 | Msa0996540:CDS | 50.0% | |
| ATCCTCCGCTTGCACCAATA+AGG | - | chr6_4:74838483-74838502 | None:intergenic | 50.0% | |
| GCAAGCGGAGGATATGAAAG+TGG | + | chr6_4:74838490-74838509 | Msa0996540:CDS | 50.0% | |
| CCGCCAAAGAGATCATCAAG+AGG | + | chr6_4:74837436-74837455 | Msa0996540:CDS | 50.0% | |
| AACAACACTTTCAGGGGCCT+CGG | + | chr6_4:74837558-74837577 | Msa0996540:CDS | 50.0% | |
| GACTCCATTCAGTTCCTCGA+TGG | - | chr6_4:74838072-74838091 | None:intergenic | 50.0% | |
| AACCTTATTGGTGCAAGCGG+AGG | + | chr6_4:74838478-74838497 | Msa0996540:CDS | 50.0% | |
| ATCCTCCGCTTGCACCAATA+AGG | - | chr6_4:74838483-74838502 | None:intergenic | 50.0% | |
| GCAAGCGGAGGATATGAAAG+TGG | + | chr6_4:74838490-74838509 | Msa0996540:CDS | 50.0% | |
| GGAGGAGATCTTAACCCTCG+TGG | + | chr6_4:74837919-74837938 | Msa0996540:CDS | 55.0% | |
| GGAGGAGATCTTAACCCTCG+TGG | + | chr6_4:74837919-74837938 | Msa0996540:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 74837433 | 74838540 | 74837433 | ID=Msa0996540;Name=Msa0996540 |
| chr6_4 | mRNA | 74837433 | 74838540 | 74837433 | ID=Msa0996540-mRNA-1;Parent=Msa0996540;Name=Msa0996540-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|236 |
| chr6_4 | exon | 74837433 | 74837940 | 74837433 | ID=Msa0996540-mRNA-1:exon:13997;Parent=Msa0996540-mRNA-1 |
| chr6_4 | exon | 74838060 | 74838149 | 74838060 | ID=Msa0996540-mRNA-1:exon:13998;Parent=Msa0996540-mRNA-1 |
| chr6_4 | exon | 74838428 | 74838540 | 74838428 | ID=Msa0996540-mRNA-1:exon:13999;Parent=Msa0996540-mRNA-1 |
| chr6_4 | CDS | 74837433 | 74837940 | 74837433 | ID=Msa0996540-mRNA-1:cds;Parent=Msa0996540-mRNA-1 |
| chr6_4 | CDS | 74838060 | 74838149 | 74838060 | ID=Msa0996540-mRNA-1:cds;Parent=Msa0996540-mRNA-1 |
| chr6_4 | CDS | 74838428 | 74838540 | 74838428 | ID=Msa0996540-mRNA-1:cds;Parent=Msa0996540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
