Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999880 | XP_039682640.1 | 85.202 | 223 | 25 | 2 | 4 | 219 | 868 | 1089 | 1.18e-121 | 380 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999880 | A0A396HM39 | 85.202 | 223 | 25 | 2 | 4 | 219 | 868 | 1089 | 5.65e-122 | 380 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0579660 | Msa0999880 | 0.801839 | 7.449171e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999880 | MtrunA17_Chr6g0480041 | 85.202 | 223 | 25 | 2 | 4 | 219 | 868 | 1089 | 1.09e-125 | 380 |
| Msa0999880 | MtrunA17_Chr6g0479611 | 61.039 | 231 | 67 | 6 | 5 | 217 | 17 | 242 | 5.94e-86 | 254 |
| Msa0999880 | MtrunA17_Chr6g0479591 | 59.459 | 259 | 62 | 7 | 1 | 219 | 821 | 1076 | 2.42e-82 | 265 |
| Msa0999880 | MtrunA17_Chr6g0481141 | 62.832 | 226 | 73 | 5 | 1 | 218 | 899 | 1121 | 4.50e-78 | 253 |
| Msa0999880 | MtrunA17_Chr6g0481251 | 60.181 | 221 | 79 | 5 | 5 | 219 | 710 | 927 | 1.06e-72 | 237 |
| Msa0999880 | MtrunA17_Chr4g0025691 | 55.895 | 229 | 76 | 6 | 5 | 219 | 134 | 351 | 2.27e-72 | 223 |
| Msa0999880 | MtrunA17_Chr4g0025771 | 53.469 | 245 | 74 | 8 | 1 | 219 | 299 | 529 | 6.01e-71 | 225 |
| Msa0999880 | MtrunA17_Chr6g0479631 | 57.895 | 228 | 84 | 6 | 1 | 219 | 849 | 1073 | 1.01e-69 | 230 |
| Msa0999880 | MtrunA17_Chr6g0481231 | 57.653 | 196 | 76 | 3 | 6 | 195 | 246 | 440 | 7.94e-67 | 212 |
| Msa0999880 | MtrunA17_Chr4g0025811 | 51.965 | 229 | 84 | 7 | 5 | 216 | 841 | 1060 | 3.03e-60 | 203 |
| Msa0999880 | MtrunA17_Chr8g0368251 | 57.073 | 205 | 67 | 10 | 1 | 194 | 843 | 1037 | 6.61e-55 | 188 |
| Msa0999880 | MtrunA17_Chr6g0480321 | 52.174 | 230 | 76 | 12 | 3 | 218 | 704 | 913 | 3.03e-53 | 183 |
| Msa0999880 | MtrunA17_Chr6g0484161 | 55.556 | 180 | 60 | 5 | 1 | 167 | 869 | 1041 | 9.54e-52 | 179 |
| Msa0999880 | MtrunA17_Chr6g0479621 | 46.875 | 256 | 90 | 9 | 5 | 219 | 846 | 1096 | 1.55e-50 | 176 |
| Msa0999880 | MtrunA17_Chr1g0146421 | 56.818 | 176 | 58 | 6 | 1 | 165 | 841 | 1009 | 2.63e-50 | 175 |
| Msa0999880 | MtrunA17_Chr6g0480421 | 50.000 | 204 | 76 | 7 | 5 | 194 | 702 | 893 | 3.16e-49 | 172 |
| Msa0999880 | MtrunA17_Chr4g0025751 | 46.977 | 215 | 57 | 5 | 5 | 202 | 832 | 1006 | 1.02e-47 | 167 |
| Msa0999880 | MtrunA17_Chr6g0479701 | 47.534 | 223 | 79 | 8 | 5 | 194 | 806 | 1023 | 7.13e-46 | 162 |
| Msa0999880 | MtrunA17_Chr6g0479671 | 47.917 | 192 | 89 | 4 | 1 | 187 | 869 | 1054 | 8.63e-46 | 162 |
| Msa0999880 | MtrunA17_Chr6g0480451 | 49.744 | 195 | 67 | 7 | 1 | 191 | 907 | 1074 | 4.29e-45 | 160 |
| Msa0999880 | MtrunA17_Chr6g0479641 | 48.469 | 196 | 86 | 7 | 5 | 186 | 849 | 1043 | 6.44e-45 | 159 |
| Msa0999880 | MtrunA17_Chr6g0479741 | 50.556 | 180 | 70 | 6 | 1 | 167 | 127 | 300 | 3.00e-44 | 150 |
| Msa0999880 | MtrunA17_Chr6g0479001 | 45.771 | 201 | 80 | 6 | 1 | 192 | 836 | 1016 | 2.36e-42 | 152 |
| Msa0999880 | MtrunA17_Chr2g0300251 | 46.087 | 230 | 84 | 6 | 1 | 219 | 875 | 1075 | 5.63e-42 | 151 |
| Msa0999880 | MtrunA17_Chr6g0480521 | 50.299 | 167 | 68 | 8 | 1 | 165 | 845 | 998 | 5.81e-42 | 151 |
| Msa0999880 | MtrunA17_Chr4g0025831 | 50.000 | 170 | 76 | 4 | 1 | 167 | 841 | 1004 | 4.81e-41 | 148 |
| Msa0999880 | MtrunA17_Chr6g0478451 | 46.875 | 192 | 72 | 7 | 1 | 180 | 865 | 1038 | 3.82e-40 | 145 |
| Msa0999880 | MtrunA17_Chr6g0479841 | 44.105 | 229 | 74 | 9 | 2 | 194 | 502 | 712 | 1.89e-39 | 144 |
| Msa0999880 | MtrunA17_Chr1g0181021 | 43.719 | 199 | 69 | 6 | 1 | 167 | 119 | 306 | 9.77e-39 | 135 |
| Msa0999880 | MtrunA17_Chr4g0025731 | 60.465 | 129 | 42 | 3 | 99 | 219 | 10 | 137 | 1.43e-38 | 130 |
| Msa0999880 | MtrunA17_Chr6g0478841 | 46.809 | 188 | 68 | 7 | 5 | 177 | 837 | 1007 | 9.88e-37 | 136 |
| Msa0999880 | MtrunA17_Chr6g0479821 | 43.000 | 200 | 79 | 7 | 1 | 180 | 802 | 986 | 2.41e-32 | 123 |
| Msa0999880 | MtrunA17_Chr6g0480361 | 45.402 | 174 | 72 | 9 | 5 | 169 | 294 | 453 | 6.49e-32 | 120 |
| Msa0999880 | MtrunA17_Chr6g0480351 | 60.684 | 117 | 35 | 5 | 111 | 217 | 1 | 116 | 4.47e-31 | 111 |
| Msa0999880 | MtrunA17_Chr6g0480311 | 48.684 | 152 | 66 | 7 | 5 | 148 | 839 | 986 | 8.47e-28 | 110 |
| Msa0999880 | MtrunA17_Chr6g0480311 | 44.531 | 128 | 30 | 6 | 128 | 219 | 1063 | 1185 | 3.20e-15 | 73.9 |
| Msa0999880 | MtrunA17_Chr6g0479051 | 41.038 | 212 | 67 | 12 | 1 | 191 | 860 | 1034 | 1.77e-26 | 106 |
| Msa0999880 | MtrunA17_Chr6g0481001 | 38.286 | 175 | 85 | 8 | 1 | 167 | 810 | 969 | 8.58e-26 | 104 |
| Msa0999880 | MtrunA17_Chr5g0415831 | 36.628 | 172 | 90 | 8 | 1 | 164 | 253 | 413 | 7.62e-24 | 98.2 |
| Msa0999880 | MtrunA17_Chr6g0480911 | 34.682 | 173 | 95 | 7 | 2 | 166 | 892 | 1054 | 6.12e-23 | 96.7 |
| Msa0999880 | MtrunA17_Chr6g0482511 | 36.813 | 182 | 79 | 10 | 1 | 164 | 909 | 1072 | 5.74e-22 | 93.6 |
| Msa0999880 | MtrunA17_Chr6g0481011 | 38.418 | 177 | 77 | 10 | 1 | 167 | 896 | 1050 | 2.06e-21 | 92.0 |
| Msa0999880 | MtrunA17_Chr6g0472561 | 37.222 | 180 | 79 | 8 | 1 | 167 | 166 | 324 | 2.48e-21 | 90.5 |
| Msa0999880 | MtrunA17_Chr8g0353381 | 36.364 | 176 | 82 | 8 | 1 | 164 | 1 | 158 | 3.07e-21 | 86.3 |
| Msa0999880 | MtrunA17_Chr6g0451551 | 33.898 | 177 | 91 | 10 | 1 | 165 | 1009 | 1171 | 1.89e-20 | 89.4 |
| Msa0999880 | MtrunA17_Chr8g0353371 | 36.364 | 176 | 82 | 8 | 1 | 164 | 950 | 1107 | 3.61e-20 | 88.6 |
| Msa0999880 | MtrunA17_Chr1g0153501 | 37.805 | 164 | 80 | 10 | 3 | 164 | 1 | 144 | 7.87e-20 | 82.4 |
| Msa0999880 | MtrunA17_Chr1g0181031 | 68.519 | 54 | 17 | 0 | 1 | 54 | 13 | 66 | 8.39e-20 | 80.9 |
| Msa0999880 | MtrunA17_Chr8g0371711 | 35.294 | 170 | 85 | 9 | 1 | 164 | 889 | 1039 | 2.48e-19 | 85.9 |
| Msa0999880 | MtrunA17_Chr6g0482141 | 36.517 | 178 | 90 | 9 | 2 | 177 | 1049 | 1205 | 2.82e-19 | 85.9 |
| Msa0999880 | MtrunA17_Chr6g0480981 | 36.471 | 170 | 85 | 9 | 1 | 164 | 622 | 774 | 6.31e-19 | 84.7 |
| Msa0999880 | MtrunA17_Chr6g0482441 | 36.686 | 169 | 77 | 9 | 2 | 164 | 1130 | 1274 | 1.41e-18 | 84.0 |
| Msa0999880 | MtrunA17_Chr8g0350801 | 36.416 | 173 | 77 | 9 | 2 | 164 | 928 | 1077 | 6.20e-18 | 82.0 |
| Msa0999880 | MtrunA17_Chr6g0480261 | 54.639 | 97 | 30 | 7 | 89 | 175 | 14 | 106 | 1.55e-17 | 76.3 |
| Msa0999880 | MtrunA17_Chr6g0482461 | 37.126 | 167 | 82 | 9 | 2 | 164 | 529 | 676 | 2.31e-17 | 80.1 |
| Msa0999880 | MtrunA17_Chr8g0354701 | 34.066 | 182 | 97 | 8 | 1 | 173 | 931 | 1098 | 3.41e-17 | 79.7 |
| Msa0999880 | MtrunA17_Chr6g0478771 | 80.000 | 40 | 8 | 0 | 1 | 40 | 837 | 876 | 3.36e-16 | 77.0 |
| Msa0999880 | MtrunA17_Chr6g0482351 | 35.260 | 173 | 76 | 9 | 2 | 164 | 1331 | 1477 | 8.97e-16 | 75.9 |
| Msa0999880 | MtrunA17_Chr6g0482491 | 33.735 | 166 | 90 | 7 | 1 | 164 | 1129 | 1276 | 2.85e-15 | 74.3 |
| Msa0999880 | MtrunA17_Chr6g0480051 | 34.337 | 166 | 82 | 6 | 1 | 157 | 644 | 791 | 3.33e-15 | 73.9 |
| Msa0999880 | MtrunA17_Chr6g0482321 | 34.731 | 167 | 87 | 8 | 2 | 164 | 996 | 1144 | 5.41e-15 | 73.6 |
| Msa0999880 | MtrunA17_Chr6g0479651 | 32.727 | 165 | 96 | 5 | 1 | 157 | 876 | 1033 | 1.11e-14 | 72.4 |
| Msa0999880 | MtrunA17_Chr6g0480401 | 72.500 | 40 | 11 | 0 | 1 | 40 | 344 | 383 | 4.53e-14 | 70.1 |
| Msa0999880 | MtrunA17_Chr6g0480931 | 31.847 | 157 | 83 | 7 | 19 | 167 | 5 | 145 | 1.81e-13 | 65.9 |
| Msa0999880 | MtrunA17_Chr6g0479771 | 44.545 | 110 | 39 | 6 | 86 | 190 | 1 | 93 | 9.04e-13 | 65.9 |
| Msa0999880 | MtrunA17_Chr8g0354721 | 30.769 | 169 | 98 | 6 | 1 | 164 | 936 | 1090 | 1.64e-12 | 66.2 |
| Msa0999880 | MtrunA17_Chr4g0006771 | 60.000 | 50 | 19 | 1 | 1 | 49 | 870 | 919 | 2.64e-12 | 65.5 |
| Msa0999880 | MtrunA17_Chr5g0442761 | 26.087 | 230 | 136 | 7 | 1 | 218 | 905 | 1112 | 3.35e-12 | 65.5 |
| Msa0999880 | MtrunA17_Chr8g0354711 | 31.414 | 191 | 105 | 11 | 1 | 178 | 926 | 1103 | 4.92e-12 | 64.7 |
| Msa0999880 | MtrunA17_Chr3g0081531 | 27.485 | 171 | 102 | 9 | 1 | 164 | 877 | 1032 | 6.42e-12 | 64.3 |
| Msa0999880 | MtrunA17_Chr6g0480961 | 55.102 | 49 | 21 | 1 | 1 | 49 | 1 | 48 | 1.14e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 55 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGTACACTCCTTAATATT+TGG | 0.192085 | 6_4:-82401046 | None:intergenic |
| TTGACAAACAACTTGATTCT+TGG | 0.199537 | 6_4:-82400822 | None:intergenic |
| AATCAATTCTGATGAAAGTT+TGG | 0.243932 | 6_4:+82401934 | Msa0999880:three_prime_UTR |
| TCAGTTCAAGTGTTTGATTA+TGG | 0.308961 | 6_4:+82403294 | Msa0999880:intron |
| ATTTGGTGCTCGAACCAATC+TGG | 0.321994 | 6_4:-82400711 | None:intergenic |
| AGGATGAGATCCAAATATTA+AGG | 0.338588 | 6_4:+82401036 | Msa0999880:CDS |
| AGAAGAATCGAAGTTATAGA+AGG | 0.348680 | 6_4:-82400774 | None:intergenic |
| GGGATCCCCTCTGTTCCGTT+TGG | 0.349261 | 6_4:-82400690 | None:intergenic |
| AATCTATCTCTCAGGGCTTC+CGG | 0.351584 | 6_4:+82401958 | Msa0999880:three_prime_UTR |
| ATCAATTCTGATGAAAGTTT+GGG | 0.354882 | 6_4:+82401935 | Msa0999880:three_prime_UTR |
| TCCGTTTGGGAAACGAAAAT+TGG | 0.355089 | 6_4:-82400676 | None:intergenic |
| TAGAAGAATGTTATTGAGTC+AGG | 0.372127 | 6_4:+82400547 | Msa0999880:exon |
| GGATCCCCTCTGTTCCGTTT+GGG | 0.374201 | 6_4:-82400689 | None:intergenic |
| AATATTAAGGAGTGTACAAA+TGG | 0.383941 | 6_4:+82401049 | Msa0999880:CDS |
| GCATCCTTATGTAATCGTTA+TGG | 0.388933 | 6_4:-82401893 | None:intergenic |
| GATTAAATTCGAGTTTGAAA+TGG | 0.398692 | 6_4:+82400950 | Msa0999880:CDS |
| CATTTAGCAGCTTTATTGTC+CGG | 0.419706 | 6_4:+82401236 | Msa0999880:CDS |
| AAGCAAAGATTGGGTGAAGT+TGG | 0.421225 | 6_4:+82401182 | Msa0999880:CDS |
| AGAATCAAGTTGTTTGTCAA+TGG | 0.427429 | 6_4:+82400825 | Msa0999880:CDS |
| AAGCACCAAGTTCTGCATTC+CGG | 0.429692 | 6_4:-82401255 | None:intergenic |
| CTGGATTGAACGAATATTGC+CGG | 0.433662 | 6_4:-82401977 | None:intergenic |
| AATGGGAATCCATGTGTTGA+AGG | 0.469816 | 6_4:+82401067 | Msa0999880:CDS |
| AGTTTGGGAATCTATCTCTC+AGG | 0.473268 | 6_4:+82401950 | Msa0999880:three_prime_UTR |
| CGGCAATATTCGTTCAATCC+AGG | 0.491306 | 6_4:+82401978 | Msa0999880:three_prime_UTR |
| TTTGGTGCTCGAACCAATCT+GGG | 0.495734 | 6_4:-82400710 | None:intergenic |
| ATTGTCCGGAATGCAGAACT+TGG | 0.498117 | 6_4:+82401250 | Msa0999880:CDS |
| CGTGATGGCGAATTTGCACT+TGG | 0.503436 | 6_4:+82400890 | Msa0999880:CDS |
| CGTTTCCCAAACGGAACAGA+GGG | 0.503468 | 6_4:+82400684 | Msa0999880:CDS |
| AACACCATGGCTAAATTCCT+TGG | 0.506206 | 6_4:+82401297 | Msa0999880:exon |
| TTGGTTCGAGCACCAAATCA+AGG | 0.511703 | 6_4:+82400716 | Msa0999880:CDS |
| GAACAGAGGGGATCCCAGAT+TGG | 0.515347 | 6_4:+82400697 | Msa0999880:CDS |
| TAACAGAAACTACATGAGGC+TGG | 0.519951 | 6_4:+82400648 | Msa0999880:intron |
| GAAGCCATAACGATTACATA+AGG | 0.520989 | 6_4:+82401889 | Msa0999880:three_prime_UTR |
| ATGGCTAAATTCCTTGGTCC+AGG | 0.530963 | 6_4:+82401303 | Msa0999880:three_prime_UTR |
| ATTACATAAGGATGCTTCAA+AGG | 0.536927 | 6_4:+82401901 | Msa0999880:three_prime_UTR |
| TGGTTCGAGCACCAAATCAA+GGG | 0.550435 | 6_4:+82400717 | Msa0999880:CDS |
| CAATAACATTCTTCTACTTG+AGG | 0.555173 | 6_4:-82400540 | None:intergenic |
| TTCGAGTTTGAAATGGACAA+TGG | 0.576604 | 6_4:+82400957 | Msa0999880:CDS |
| GAAGAATCGAAGTTATAGAA+GGG | 0.578152 | 6_4:-82400773 | None:intergenic |
| GTTTGGGAATCTATCTCTCA+GGG | 0.582590 | 6_4:+82401951 | Msa0999880:three_prime_UTR |
| GATTCATGTAAAGCTGATTG+TGG | 0.603782 | 6_4:+82400998 | Msa0999880:CDS |
| ATATTAAGGAGTGTACAAAT+GGG | 0.604891 | 6_4:+82401050 | Msa0999880:CDS |
| GGAATCAGCATAGATCCTCC+CGG | 0.608955 | 6_4:-82400801 | None:intergenic |
| GATATTCATTATTTACTGTG+TGG | 0.611769 | 6_4:+82400861 | Msa0999880:CDS |
| CAAGTGCAAATTCGCCATCA+CGG | 0.618773 | 6_4:-82400889 | None:intergenic |
| TCGTTTCCCAAACGGAACAG+AGG | 0.640778 | 6_4:+82400683 | Msa0999880:CDS |
| GGTTCGAGCACCAAATCAAG+GGG | 0.649551 | 6_4:+82400718 | Msa0999880:CDS |
| ACTGTGTGGTGCTACCGTGA+TGG | 0.650875 | 6_4:+82400875 | Msa0999880:CDS |
| AAACTAACAGAAACTACATG+AGG | 0.664100 | 6_4:+82400644 | Msa0999880:intron |
| TGGACCAAGGAATTTAGCCA+TGG | 0.671556 | 6_4:-82401301 | None:intergenic |
| ATAATGATGTACCTGGACCA+AGG | 0.676640 | 6_4:-82401314 | None:intergenic |
| ACAAAAGAAAAGTAACACCA+TGG | 0.683077 | 6_4:+82401284 | Msa0999880:exon |
| CAGAAACTACATGAGGCTGG+AGG | 0.701436 | 6_4:+82400651 | Msa0999880:intron |
| GTTTCCCAAACGGAACAGAG+GGG | 0.729056 | 6_4:+82400685 | Msa0999880:CDS |
| GTTCGAGCACCAAATCAAGG+GGG | 0.786287 | 6_4:+82400719 | Msa0999880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAGAAATATATTACTTT+GGG | - | chr6_4:82402160-82402179 | None:intergenic | 10.0% |
| !! | TATTTAGAAATATATTACTT+TGG | - | chr6_4:82402161-82402180 | None:intergenic | 10.0% |
| !!! | ATTTATGTTTTCAATGTATT+AGG | - | chr6_4:82402083-82402102 | None:intergenic | 15.0% |
| !!! | TAATCAATTTCTTTTTCAAA+AGG | - | chr6_4:82402133-82402152 | None:intergenic | 15.0% |
| !!! | TTTTTGCAATTTTTAATCTT+TGG | - | chr6_4:82402319-82402338 | None:intergenic | 15.0% |
| !! | ATTATAAGTCATATGAATAA+AGG | - | chr6_4:82402516-82402535 | None:intergenic | 15.0% |
| !!! | AACATATTTTAGTTCTAAAA+CGG | - | chr6_4:82402595-82402614 | None:intergenic | 15.0% |
| !!! | ATTTTTGTTTGATCTGAAAT+TGG | + | chr6_4:82400920-82400939 | Msa0999880:CDS | 20.0% |
| !!! | GTATTGCTATATTTTCTATA+AGG | - | chr6_4:82401131-82401150 | None:intergenic | 20.0% |
| !!! | TTATTTTCTCAAATTACTAC+CGG | + | chr6_4:82401457-82401476 | Msa0999880:intron | 20.0% |
| !! | AAGCAACACATTTAAATTAA+CGG | - | chr6_4:82402237-82402256 | None:intergenic | 20.0% |
| !! | ATTTATATGTATGAACTTGA+TGG | + | chr6_4:82402366-82402385 | Msa0999880:intron | 20.0% |
| !!! | TGTTTTTAAAAATGAGGATA+GGG | - | chr6_4:82402709-82402728 | None:intergenic | 20.0% |
| !!! | ATGTTTTTAAAAATGAGGAT+AGG | - | chr6_4:82402710-82402729 | None:intergenic | 20.0% |
| !! | TTCAATCTTAGTATACAAAT+TGG | + | chr6_4:82402984-82403003 | Msa0999880:intron | 20.0% |
| ! | GATATTCATTATTTACTGTG+TGG | + | chr6_4:82400861-82400880 | Msa0999880:CDS | 25.0% |
| !! | GATTAAATTCGAGTTTGAAA+TGG | + | chr6_4:82400950-82400969 | Msa0999880:CDS | 25.0% |
| !!! | TGAATCCATTCATTTTTTAG+AGG | - | chr6_4:82400984-82401003 | None:intergenic | 25.0% |
| ! | TTTGTACACTCCTTAATATT+TGG | - | chr6_4:82401049-82401068 | None:intergenic | 25.0% |
| !! | AATATTAAGGAGTGTACAAA+TGG | + | chr6_4:82401049-82401068 | Msa0999880:CDS | 25.0% |
| !! | ATATTAAGGAGTGTACAAAT+GGG | + | chr6_4:82401050-82401069 | Msa0999880:CDS | 25.0% |
| !!! | GTGTTACTTTTCTTTTGTTT+CGG | - | chr6_4:82401282-82401301 | None:intergenic | 25.0% |
| !! | ATTTATGATAATGATGTACC+TGG | - | chr6_4:82401324-82401343 | None:intergenic | 25.0% |
| ! | TTGATGTGAAGTATATAATG+TGG | + | chr6_4:82401666-82401685 | Msa0999880:intron | 25.0% |
| ! | TACTGTAAAATTAACAGAAG+AGG | + | chr6_4:82401711-82401730 | Msa0999880:intron | 25.0% |
| ! | ACATAATATACATTACTGCA+CGG | + | chr6_4:82401745-82401764 | Msa0999880:intron | 25.0% |
| ! | AATCAATTCTGATGAAAGTT+TGG | + | chr6_4:82401934-82401953 | Msa0999880:three_prime_UTR | 25.0% |
| ! | ATCAATTCTGATGAAAGTTT+GGG | + | chr6_4:82401935-82401954 | Msa0999880:three_prime_UTR | 25.0% |
| !! | TACATAACTTGTCATTTCTT+AGG | + | chr6_4:82402200-82402219 | Msa0999880:intron | 25.0% |
| !! | ACATAACTTGTCATTTCTTA+GGG | + | chr6_4:82402201-82402220 | Msa0999880:intron | 25.0% |
| !!! | GAGAGATGTTTTTAAAAATG+AGG | - | chr6_4:82402715-82402734 | None:intergenic | 25.0% |
| !! | AACAAGAAAATGCTTAGTTT+TGG | - | chr6_4:82402814-82402833 | None:intergenic | 25.0% |
| ! | TATGAATTCGTATTGTCATA+CGG | + | chr6_4:82402877-82402896 | Msa0999880:intron | 25.0% |
| ! | CATATGATTAAATTGCCTTT+AGG | + | chr6_4:82403147-82403166 | Msa0999880:intron | 25.0% |
| CAATAACATTCTTCTACTTG+AGG | - | chr6_4:82400543-82400562 | None:intergenic | 30.0% | |
| TAGAAGAATGTTATTGAGTC+AGG | + | chr6_4:82400547-82400566 | Msa0999880:exon | 30.0% | |
| AAACTAACAGAAACTACATG+AGG | + | chr6_4:82400644-82400663 | Msa0999880:intron | 30.0% | |
| GAAGAATCGAAGTTATAGAA+GGG | - | chr6_4:82400776-82400795 | None:intergenic | 30.0% | |
| AGAAGAATCGAAGTTATAGA+AGG | - | chr6_4:82400777-82400796 | None:intergenic | 30.0% | |
| ! | AACTTCGATTCTTCTTTTTC+CGG | + | chr6_4:82400782-82400801 | Msa0999880:CDS | 30.0% |
| TTGACAAACAACTTGATTCT+TGG | - | chr6_4:82400825-82400844 | None:intergenic | 30.0% | |
| ! | AGAATCAAGTTGTTTGTCAA+TGG | + | chr6_4:82400825-82400844 | Msa0999880:CDS | 30.0% |
| ! | ATGGACCTCTAAAAAATGAA+TGG | + | chr6_4:82400976-82400995 | Msa0999880:CDS | 30.0% |
| AGGATGAGATCCAAATATTA+AGG | + | chr6_4:82401036-82401055 | Msa0999880:CDS | 30.0% | |
| !!! | AATCTTTGCTTTTTCAGAGA+AGG | - | chr6_4:82401173-82401192 | None:intergenic | 30.0% |
| ! | TTCTCTGAAAAAGCAAAGAT+TGG | + | chr6_4:82401172-82401191 | Msa0999880:CDS | 30.0% |
| ! | TCTCTGAAAAAGCAAAGATT+GGG | + | chr6_4:82401173-82401192 | Msa0999880:CDS | 30.0% |
| ACAAAAGAAAAGTAACACCA+TGG | + | chr6_4:82401284-82401303 | Msa0999880:exon | 30.0% | |
| TTGAATGTAATCACGTGTAT+TGG | - | chr6_4:82401432-82401451 | None:intergenic | 30.0% | |
| TTACACATAAAGCTTACTCT+TGG | + | chr6_4:82401584-82401603 | Msa0999880:intron | 30.0% | |
| ACAGCTAATTAGAACAATAG+AGG | - | chr6_4:82401631-82401650 | None:intergenic | 30.0% | |
| ATTACATAAGGATGCTTCAA+AGG | + | chr6_4:82401901-82401920 | Msa0999880:three_prime_UTR | 30.0% | |
| ACTTGTAACAACATTCATCT+AGG | - | chr6_4:82402055-82402074 | None:intergenic | 30.0% | |
| TTGTATCTAATTTGACCTGT+TGG | - | chr6_4:82402264-82402283 | None:intergenic | 30.0% | |
| !!! | AGAACTTTTGTTTTCAAGAC+TGG | + | chr6_4:82402615-82402634 | Msa0999880:intron | 30.0% |
| TTATAAACATGACGAAAGTG+AGG | + | chr6_4:82402660-82402679 | Msa0999880:intron | 30.0% | |
| ATGAATTCGTATTGTCATAC+GGG | + | chr6_4:82402878-82402897 | Msa0999880:intron | 30.0% | |
| TTCATTTCTTCTTGAACAAG+TGG | - | chr6_4:82403013-82403032 | None:intergenic | 30.0% | |
| ACAAACACTTGTATTCCTAA+AGG | - | chr6_4:82403165-82403184 | None:intergenic | 30.0% | |
| CATACTGTGATATTGAAAGA+TGG | + | chr6_4:82403186-82403205 | Msa0999880:intron | 30.0% | |
| ! | AACATAGATTGTGATTTGTG+AGG | - | chr6_4:82403214-82403233 | None:intergenic | 30.0% |
| GAACTTCCATTTCAAAAAGT+TGG | + | chr6_4:82403243-82403262 | Msa0999880:intron | 30.0% | |
| !! | ATGCATCCAACTTTTTGAAA+TGG | - | chr6_4:82403252-82403271 | None:intergenic | 30.0% |
| TCAGTTCAAGTGTTTGATTA+TGG | + | chr6_4:82403294-82403313 | Msa0999880:intron | 30.0% | |
| ! | ACCAATTTTCGTTTCCCAAA+CGG | + | chr6_4:82400675-82400694 | Msa0999880:CDS | 35.0% |
| ! | ACTTCGATTCTTCTTTTTCC+GGG | + | chr6_4:82400783-82400802 | Msa0999880:CDS | 35.0% |
| ! | TTCGAGTTTGAAATGGACAA+TGG | + | chr6_4:82400957-82400976 | Msa0999880:CDS | 35.0% |
| GATTCATGTAAAGCTGATTG+TGG | + | chr6_4:82400998-82401017 | Msa0999880:CDS | 35.0% | |
| !!! | TGCTTTTTTCCTTCAACACA+TGG | - | chr6_4:82401079-82401098 | None:intergenic | 35.0% |
| !! | CATTTAGCAGCTTTATTGTC+CGG | + | chr6_4:82401236-82401255 | Msa0999880:CDS | 35.0% |
| AAAATTTCTGTCAGTCGAGA+GGG | - | chr6_4:82401542-82401561 | None:intergenic | 35.0% | |
| TAAAATTTCTGTCAGTCGAG+AGG | - | chr6_4:82401543-82401562 | None:intergenic | 35.0% | |
| TATACATTACTGCACGGATT+AGG | + | chr6_4:82401751-82401770 | Msa0999880:intron | 35.0% | |
| ! | GTCATGTAGAAGCTTTTTGT+CGG | + | chr6_4:82401777-82401796 | Msa0999880:intron | 35.0% |
| GAAGCCATAACGATTACATA+AGG | + | chr6_4:82401889-82401908 | Msa0999880:three_prime_UTR | 35.0% | |
| GCATCCTTATGTAATCGTTA+TGG | - | chr6_4:82401896-82401915 | None:intergenic | 35.0% | |
| TATTAGACGATGTGTGAAAG+TGG | - | chr6_4:82402019-82402038 | None:intergenic | 35.0% | |
| ATCTAATTTGACCTGTTGGA+CGG | - | chr6_4:82402260-82402279 | None:intergenic | 35.0% | |
| ! | ATGAACTTGATGGTATGATC+TGG | + | chr6_4:82402376-82402395 | Msa0999880:intron | 35.0% |
| TATGATCTGGCAAATGGAAA+TGG | + | chr6_4:82402389-82402408 | Msa0999880:intron | 35.0% | |
| ! | TTCGTGTCATAACTCAGTTT+TGG | + | chr6_4:82402417-82402436 | Msa0999880:intron | 35.0% |
| CTCTCTCATAACATTGAACA+TGG | + | chr6_4:82402730-82402749 | Msa0999880:intron | 35.0% | |
| !!! | TTTTTTGACTGTACATTGCC+AGG | + | chr6_4:82402832-82402851 | Msa0999880:intron | 35.0% |
| GTTCAAGAAGAAATGAAGCA+TGG | + | chr6_4:82403016-82403035 | Msa0999880:intron | 35.0% | |
| TCTGATTTACTCTTTCCGTA+CGG | - | chr6_4:82403065-82403084 | None:intergenic | 35.0% | |
| CGGAAAGAGTAAATCAGATA+AGG | + | chr6_4:82403067-82403086 | Msa0999880:intron | 35.0% | |
| TAACAGAAACTACATGAGGC+TGG | + | chr6_4:82400648-82400667 | Msa0999880:intron | 40.0% | |
| TCCGTTTGGGAAACGAAAAT+TGG | - | chr6_4:82400679-82400698 | None:intergenic | 40.0% | |
| AAATTGTCTCCCCCTTGATT+TGG | - | chr6_4:82400731-82400750 | None:intergenic | 40.0% | |
| !! | TGTGGATGATGCTTTTAGAG+AGG | + | chr6_4:82401016-82401035 | Msa0999880:CDS | 40.0% |
| AATGGGAATCCATGTGTTGA+AGG | + | chr6_4:82401067-82401086 | Msa0999880:CDS | 40.0% | |
| GAAGGAAAAAAGCAACACAG+AGG | + | chr6_4:82401085-82401104 | Msa0999880:CDS | 40.0% | |
| AAGCAAAGATTGGGTGAAGT+TGG | + | chr6_4:82401182-82401201 | Msa0999880:CDS | 40.0% | |
| AACACCATGGCTAAATTCCT+TGG | + | chr6_4:82401297-82401316 | Msa0999880:exon | 40.0% | |
| ATAATGATGTACCTGGACCA+AGG | - | chr6_4:82401317-82401336 | None:intergenic | 40.0% | |
| ! | GTAATCACGTGTATTGGTGT+TGG | - | chr6_4:82401426-82401445 | None:intergenic | 40.0% |
| AGTTTGGGAATCTATCTCTC+AGG | + | chr6_4:82401950-82401969 | Msa0999880:three_prime_UTR | 40.0% | |
| GTTTGGGAATCTATCTCTCA+GGG | + | chr6_4:82401951-82401970 | Msa0999880:three_prime_UTR | 40.0% | |
| CTGGATTGAACGAATATTGC+CGG | - | chr6_4:82401980-82401999 | None:intergenic | 40.0% | |
| AATCCAGGTGTAGTTGAAGT+TGG | + | chr6_4:82401993-82402012 | Msa0999880:intron | 40.0% | |
| TGATGGTATGATCTGGCAAA+TGG | + | chr6_4:82402383-82402402 | Msa0999880:intron | 40.0% | |
| GTGAACCAGTTTGTAACTTC+AGG | - | chr6_4:82402458-82402477 | None:intergenic | 40.0% | |
| AATGAGGATAGGGAGATTGA+AGG | - | chr6_4:82402699-82402718 | None:intergenic | 40.0% | |
| AGCCTGTTGTCGGTAATTTA+CGG | + | chr6_4:82402775-82402794 | Msa0999880:intron | 40.0% | |
| TTCCGTAAATTACCGACAAC+AGG | - | chr6_4:82402780-82402799 | None:intergenic | 40.0% | |
| CAAGAAGAAATGAAGCATGG+AGG | + | chr6_4:82403019-82403038 | Msa0999880:intron | 40.0% | |
| TTTACTCTTTCCGTACGGAT+TGG | - | chr6_4:82403060-82403079 | None:intergenic | 40.0% | |
| !! | TTTGGTGCTCGAACCAATCT+GGG | - | chr6_4:82400713-82400732 | None:intergenic | 45.0% |
| !! | ATTTGGTGCTCGAACCAATC+TGG | - | chr6_4:82400714-82400733 | None:intergenic | 45.0% |
| ! | TTGGTTCGAGCACCAAATCA+AGG | + | chr6_4:82400716-82400735 | Msa0999880:CDS | 45.0% |
| TGGTTCGAGCACCAAATCAA+GGG | + | chr6_4:82400717-82400736 | Msa0999880:CDS | 45.0% | |
| AGGGGGAGACAATTTCTTTC+TGG | + | chr6_4:82400736-82400755 | Msa0999880:CDS | 45.0% | |
| ! | TCGATTCTTCTTTTTCCGGG+AGG | + | chr6_4:82400786-82400805 | Msa0999880:CDS | 45.0% |
| CAAGTGCAAATTCGCCATCA+CGG | - | chr6_4:82400892-82400911 | None:intergenic | 45.0% | |
| ATTGTCCGGAATGCAGAACT+TGG | + | chr6_4:82401250-82401269 | Msa0999880:CDS | 45.0% | |
| AAGCACCAAGTTCTGCATTC+CGG | - | chr6_4:82401258-82401277 | None:intergenic | 45.0% | |
| TGGACCAAGGAATTTAGCCA+TGG | - | chr6_4:82401304-82401323 | None:intergenic | 45.0% | |
| ATGGCTAAATTCCTTGGTCC+AGG | + | chr6_4:82401303-82401322 | Msa0999880:three_prime_UTR | 45.0% | |
| AGACACTGTTTCGTCAACAC+CGG | - | chr6_4:82401479-82401498 | None:intergenic | 45.0% | |
| !!! | GCTTTTTGTCGGCTCATCAA+TGG | + | chr6_4:82401788-82401807 | Msa0999880:intron | 45.0% |
| TTATGGCTTCTCCTTTCTGC+AGG | - | chr6_4:82401879-82401898 | None:intergenic | 45.0% | |
| AATCTATCTCTCAGGGCTTC+CGG | + | chr6_4:82401958-82401977 | Msa0999880:three_prime_UTR | 45.0% | |
| CGGCAATATTCGTTCAATCC+AGG | + | chr6_4:82401978-82401997 | Msa0999880:three_prime_UTR | 45.0% | |
| CCAGTTTGTAACTTCAGGCT+TGG | - | chr6_4:82402453-82402472 | None:intergenic | 45.0% | |
| CCAAGCCTGAAGTTACAAAC+TGG | + | chr6_4:82402450-82402469 | Msa0999880:intron | 45.0% | |
| GGGAGATTGAAGGTAGATGT+TGG | - | chr6_4:82402689-82402708 | None:intergenic | 45.0% | |
| GACAACAGGCTCAAATCAAC+GGG | - | chr6_4:82402766-82402785 | None:intergenic | 45.0% | |
| CGACAACAGGCTCAAATCAA+CGG | - | chr6_4:82402767-82402786 | None:intergenic | 45.0% | |
| !! | CGTTGATTTGAGCCTGTTGT+CGG | + | chr6_4:82402765-82402784 | Msa0999880:intron | 45.0% |
| GATCACTACAGATGGTTTCC+TGG | - | chr6_4:82402853-82402872 | None:intergenic | 45.0% | |
| GGAAACCATCTGTAGTGATC+TGG | + | chr6_4:82402853-82402872 | Msa0999880:intron | 45.0% | |
| CATAGCCAGATCACTACAGA+TGG | - | chr6_4:82402861-82402880 | None:intergenic | 45.0% | |
| TTGTCATACGGGATGTCTAG+TGG | + | chr6_4:82402889-82402908 | Msa0999880:intron | 45.0% | |
| ! | AAATCCGTTGGTTGCTCGAA+AGG | + | chr6_4:82402926-82402945 | Msa0999880:intron | 45.0% |
| ! | AATCCGTTGGTTGCTCGAAA+GGG | + | chr6_4:82402927-82402946 | Msa0999880:intron | 45.0% |
| GAAGAAATGAAGCATGGAGG+AGG | + | chr6_4:82403022-82403041 | Msa0999880:intron | 45.0% | |
| ! | GAGGTTTTCACCAATCCGTA+CGG | + | chr6_4:82403047-82403066 | Msa0999880:intron | 45.0% |
| GTAGCAGCAACAACACTGTA+TGG | + | chr6_4:82403116-82403135 | Msa0999880:intron | 45.0% | |
| CAGAAACTACATGAGGCTGG+AGG | + | chr6_4:82400651-82400670 | Msa0999880:intron | 50.0% | |
| TCGTTTCCCAAACGGAACAG+AGG | + | chr6_4:82400683-82400702 | Msa0999880:CDS | 50.0% | |
| CGTTTCCCAAACGGAACAGA+GGG | + | chr6_4:82400684-82400703 | Msa0999880:CDS | 50.0% | |
| GTTTCCCAAACGGAACAGAG+GGG | + | chr6_4:82400685-82400704 | Msa0999880:CDS | 50.0% | |
| GGTTCGAGCACCAAATCAAG+GGG | + | chr6_4:82400718-82400737 | Msa0999880:CDS | 50.0% | |
| GTTCGAGCACCAAATCAAGG+GGG | + | chr6_4:82400719-82400738 | Msa0999880:CDS | 50.0% | |
| GGAATCAGCATAGATCCTCC+CGG | - | chr6_4:82400804-82400823 | None:intergenic | 50.0% | |
| ! | CGTGATGGCGAATTTGCACT+TGG | + | chr6_4:82400890-82400909 | Msa0999880:CDS | 50.0% |
| CATTGTCCTCTCTGTCAGTG+CGG | + | chr6_4:82401503-82401522 | Msa0999880:intron | 50.0% | |
| ATTGTCCTCTCTGTCAGTGC+GGG | + | chr6_4:82401504-82401523 | Msa0999880:intron | 50.0% | |
| !! | CATTACTGCACGGATTAGGC+AGG | + | chr6_4:82401755-82401774 | Msa0999880:intron | 50.0% |
| AATGCCTGTGACCTGCAGAA+AGG | + | chr6_4:82401865-82401884 | Msa0999880:intron | 50.0% | |
| TTCTCCTTTCTGCAGGTCAC+AGG | - | chr6_4:82401872-82401891 | None:intergenic | 50.0% | |
| TGGCCAACTTCAACTACACC+TGG | - | chr6_4:82401999-82402018 | None:intergenic | 50.0% | |
| !! | ATGTGTTGCTTCCGTCCAAC+AGG | + | chr6_4:82402246-82402265 | Msa0999880:intron | 50.0% |
| CAGGCTCAAATCAACGGGAA+TGG | - | chr6_4:82402761-82402780 | None:intergenic | 50.0% | |
| GCTCGTACCACAAAATCCGT+TGG | + | chr6_4:82402914-82402933 | Msa0999880:intron | 50.0% | |
| !! | CGAGCAACCAACGGATTTTG+TGG | - | chr6_4:82402924-82402943 | None:intergenic | 50.0% |
| TTGCCCTTTCGAGCAACCAA+CGG | - | chr6_4:82402933-82402952 | None:intergenic | 50.0% | |
| GGATCCCCTCTGTTCCGTTT+GGG | - | chr6_4:82400692-82400711 | None:intergenic | 55.0% | |
| GAACAGAGGGGATCCCAGAT+TGG | + | chr6_4:82400697-82400716 | Msa0999880:CDS | 55.0% | |
| !! | ACTGTGTGGTGCTACCGTGA+TGG | + | chr6_4:82400875-82400894 | Msa0999880:CDS | 55.0% |
| ! | CGCACTGACAGAGAGGACAA+TGG | - | chr6_4:82401505-82401524 | None:intergenic | 55.0% |
| ! | CATTTCCCGCACTGACAGAG+AGG | - | chr6_4:82401512-82401531 | None:intergenic | 55.0% |
| ATGAAGCATGGAGGAGGACG+AGG | + | chr6_4:82403028-82403047 | Msa0999880:intron | 55.0% | |
| GGGATCCCCTCTGTTCCGTT+TGG | - | chr6_4:82400693-82400712 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 82400536 | 82403329 | 82400536 | ID=Msa0999880;Name=Msa0999880 |
| chr6_4 | mRNA | 82400536 | 82403329 | 82400536 | ID=Msa0999880-mRNA-1;Parent=Msa0999880;Name=Msa0999880-mRNA-1;_AED=0.20;_eAED=0.23;_QI=18|0.66|0.5|1|1|0.5|4|175|219 |
| chr6_4 | exon | 82400536 | 82400568 | 82400536 | ID=Msa0999880-mRNA-1:exon:15848;Parent=Msa0999880-mRNA-1 |
| chr6_4 | exon | 82400654 | 82401324 | 82400654 | ID=Msa0999880-mRNA-1:exon:15849;Parent=Msa0999880-mRNA-1 |
| chr6_4 | exon | 82401883 | 82401999 | 82401883 | ID=Msa0999880-mRNA-1:exon:15850;Parent=Msa0999880-mRNA-1 |
| chr6_4 | exon | 82403298 | 82403329 | 82403298 | ID=Msa0999880-mRNA-1:exon:15851;Parent=Msa0999880-mRNA-1 |
| chr6_4 | five_prime_UTR | 82400536 | 82400553 | 82400536 | ID=Msa0999880-mRNA-1:five_prime_utr;Parent=Msa0999880-mRNA-1 |
| chr6_4 | CDS | 82400554 | 82400568 | 82400554 | ID=Msa0999880-mRNA-1:cds;Parent=Msa0999880-mRNA-1 |
| chr6_4 | CDS | 82400654 | 82401298 | 82400654 | ID=Msa0999880-mRNA-1:cds;Parent=Msa0999880-mRNA-1 |
| chr6_4 | three_prime_UTR | 82401299 | 82401324 | 82401299 | ID=Msa0999880-mRNA-1:three_prime_utr;Parent=Msa0999880-mRNA-1 |
| chr6_4 | three_prime_UTR | 82401883 | 82401999 | 82401883 | ID=Msa0999880-mRNA-1:three_prime_utr;Parent=Msa0999880-mRNA-1 |
| chr6_4 | three_prime_UTR | 82403298 | 82403329 | 82403298 | ID=Msa0999880-mRNA-1:three_prime_utr;Parent=Msa0999880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
