Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002030 | XP_039690413.1 | 98.485 | 132 | 2 | 0 | 3 | 134 | 109 | 240 | 8.84e-89 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002030 | sp|A2RVQ5|AGL16_ARATH | 54.688 | 128 | 57 | 1 | 3 | 130 | 109 | 235 | 2.50e-38 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002030 | A0A072UQJ7 | 99.213 | 127 | 1 | 0 | 3 | 129 | 53 | 179 | 3.20e-85 | 256 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0851720 | Msa1002030 | 0.834654 | 2.645107e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002030 | MtrunA17_Chr5g0427961 | 87.692 | 130 | 2 | 1 | 3 | 132 | 53 | 168 | 3.60e-75 | 221 |
| Msa1002030 | MtrunA17_Chr2g0279821 | 51.538 | 130 | 63 | 0 | 3 | 132 | 109 | 238 | 1.14e-39 | 133 |
| Msa1002030 | MtrunA17_Chr5g0411691 | 55.814 | 129 | 51 | 3 | 3 | 126 | 108 | 235 | 6.16e-38 | 128 |
| Msa1002030 | MtrunA17_Chr4g0049541 | 41.176 | 119 | 57 | 3 | 3 | 115 | 109 | 220 | 1.20e-20 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002030 | AT3G57230.5 | 54.688 | 128 | 57 | 1 | 3 | 130 | 75 | 201 | 4.80e-40 | 133 |
| Msa1002030 | AT3G57230.3 | 54.688 | 128 | 57 | 1 | 3 | 130 | 75 | 201 | 4.80e-40 | 133 |
| Msa1002030 | AT3G57230.1 | 54.688 | 128 | 57 | 1 | 3 | 130 | 109 | 235 | 2.55e-39 | 132 |
| Msa1002030 | AT3G57230.4 | 54.688 | 128 | 57 | 1 | 3 | 130 | 109 | 235 | 2.55e-39 | 132 |
| Msa1002030 | AT2G22630.1 | 52.846 | 123 | 54 | 1 | 3 | 125 | 109 | 227 | 1.01e-35 | 122 |
| Msa1002030 | AT2G22630.2 | 52.846 | 123 | 54 | 1 | 3 | 125 | 109 | 227 | 1.01e-35 | 122 |
| Msa1002030 | AT4G37940.2 | 50.833 | 120 | 54 | 1 | 3 | 122 | 48 | 162 | 3.10e-34 | 117 |
| Msa1002030 | AT4G37940.1 | 50.833 | 120 | 54 | 1 | 3 | 122 | 109 | 223 | 1.14e-33 | 117 |
| Msa1002030 | AT2G14210.1 | 48.246 | 114 | 54 | 2 | 3 | 115 | 110 | 219 | 3.13e-23 | 90.9 |
| Msa1002030 | AT2G14210.2 | 48.246 | 114 | 54 | 2 | 3 | 115 | 110 | 219 | 4.25e-23 | 90.5 |
| Msa1002030 | AT4G37940.4 | 43.333 | 120 | 49 | 2 | 3 | 122 | 109 | 209 | 1.07e-22 | 89.0 |
Find 22 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGTGGTGTTCGTATGAAAA+AGG | 0.265336 | 6_4:-86594543 | Msa1002030:intron |
| GTTGCTGTGGCTGGCTGAGC+TGG | 0.265925 | 6_4:+86594032 | None:intergenic |
| TTTGACAGTCAAAGAATTAC+AGG | 0.270267 | 6_4:-86594594 | Msa1002030:CDS |
| AGTCAAAGAATTACAGGGTT+TGG | 0.349043 | 6_4:-86594588 | Msa1002030:CDS |
| TACAAAACTAGGGTATGATT+TGG | 0.359967 | 6_4:-86593984 | Msa1002030:CDS |
| TGTAGTGCTGTTGCTGTGGC+TGG | 0.362075 | 6_4:+86594023 | None:intergenic |
| CAGCACTACAAGGCCCCTTC+AGG | 0.400025 | 6_4:-86594010 | Msa1002030:CDS |
| CACGAAGGCTGATTTCCAAT+TGG | 0.418933 | 6_4:+86594561 | None:intergenic |
| ATAATGGGTGAAGAATTATC+AGG | 0.435228 | 6_4:-86594617 | Msa1002030:CDS |
| CCTTCAGGAACTACAAAACT+AGG | 0.437724 | 6_4:-86593995 | Msa1002030:CDS |
| ACAGGGTTTGGAGAACCAAT+TGG | 0.438427 | 6_4:-86594576 | Msa1002030:CDS |
| GCCACAGCAACAGCACTACA+AGG | 0.440362 | 6_4:-86594020 | Msa1002030:CDS |
| CAATTGGAAATCAGCCTTCG+TGG | 0.498114 | 6_4:-86594560 | Msa1002030:CDS |
| TATGGAACAAAAGATAAGAA+TGG | 0.521790 | 6_4:-86594124 | Msa1002030:CDS |
| GCCTTGTAGTGCTGTTGCTG+TGG | 0.529029 | 6_4:+86594019 | None:intergenic |
| TGGCTGAGCTGGAGATTCAC+AGG | 0.536518 | 6_4:+86594043 | None:intergenic |
| TTGAGTCTCACAAATGGTGT+AGG | 0.558166 | 6_4:-86594088 | Msa1002030:CDS |
| AAATGTCGAACTGTATCGTA+AGG | 0.559396 | 6_4:-86594305 | Msa1002030:CDS |
| AATACAAGAACTAAATCGAA+AGG | 0.627509 | 6_4:-86594421 | Msa1002030:intron |
| CTTCAGGAACTACAAAACTA+GGG | 0.628417 | 6_4:-86593994 | Msa1002030:CDS |
| TTGACAGTCAAAGAATTACA+GGG | 0.630718 | 6_4:-86594593 | Msa1002030:CDS |
| CTCACAAATGGTGTAGGCAT+AGG | 0.634440 | 6_4:-86594082 | Msa1002030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATCAAATTTTTTAATG+AGG | - | chr6_4:86595205-86595224 | Msa1002030:intron | 10.0% |
| !!! | AATTATCAAATTTTTTAATG+AGG | - | chr6_4:86595205-86595224 | Msa1002030:intron | 10.0% |
| !! | ATATTTAACACATTAGATAT+TGG | + | chr6_4:86594133-86594152 | None:intergenic | 15.0% |
| !! | TCTAATGTGTTAAATATTTA+AGG | - | chr6_4:86594136-86594155 | Msa1002030:intron | 15.0% |
| !! | AAATATGAAATTGAAAAAGA+AGG | - | chr6_4:86595139-86595158 | Msa1002030:intron | 15.0% |
| !! | ATATTTAACACATTAGATAT+TGG | + | chr6_4:86594133-86594152 | None:intergenic | 15.0% |
| !! | TCTAATGTGTTAAATATTTA+AGG | - | chr6_4:86594136-86594155 | Msa1002030:intron | 15.0% |
| !! | AAATATGAAATTGAAAAAGA+AGG | - | chr6_4:86595139-86595158 | Msa1002030:intron | 15.0% |
| !! | TTTGACCAATATTCTAATTA+AGG | - | chr6_4:86594076-86594095 | Msa1002030:CDS | 20.0% |
| !!! | TGATAATGAACTATCATTTA+AGG | - | chr6_4:86594719-86594738 | Msa1002030:intron | 20.0% |
| !!! | AATATGTTTTTATATTCTGC+AGG | - | chr6_4:86595055-86595074 | Msa1002030:intron | 20.0% |
| !!! | ATATGTTTTTATATTCTGCA+GGG | - | chr6_4:86595056-86595075 | Msa1002030:intron | 20.0% |
| !!! | TCATATTTTCTTGACAAATT+AGG | + | chr6_4:86595127-86595146 | None:intergenic | 20.0% |
| !! | TTTGACCAATATTCTAATTA+AGG | - | chr6_4:86594076-86594095 | Msa1002030:CDS | 20.0% |
| !!! | TGATAATGAACTATCATTTA+AGG | - | chr6_4:86594719-86594738 | Msa1002030:intron | 20.0% |
| !!! | AATATGTTTTTATATTCTGC+AGG | - | chr6_4:86595055-86595074 | Msa1002030:intron | 20.0% |
| !!! | ATATGTTTTTATATTCTGCA+GGG | - | chr6_4:86595056-86595075 | Msa1002030:intron | 20.0% |
| !!! | TCATATTTTCTTGACAAATT+AGG | + | chr6_4:86595127-86595146 | None:intergenic | 20.0% |
| ! | ATCCTCCTTAATTAGAATAT+TGG | + | chr6_4:86594084-86594103 | None:intergenic | 25.0% |
| ! | TGATAAAAGTTTGAACAATG+AGG | + | chr6_4:86594108-86594127 | None:intergenic | 25.0% |
| !! | ATTTGAACTTAGAGAAGTAT+TGG | + | chr6_4:86594417-86594436 | None:intergenic | 25.0% |
| ! | AAGAATACTGATAATTCCTT+AGG | - | chr6_4:86594529-86594548 | Msa1002030:intron | 25.0% |
| !! | ATACATCTAAAACATTCCTA+AGG | + | chr6_4:86594548-86594567 | None:intergenic | 25.0% |
| !! | AATACAGCTGAAAATCTTTT+TGG | - | chr6_4:86594673-86594692 | Msa1002030:intron | 25.0% |
| ! | CTAATAATGAAATGTTTGGA+TGG | + | chr6_4:86594748-86594767 | None:intergenic | 25.0% |
| ! | CATGCTAATAATGAAATGTT+TGG | + | chr6_4:86594752-86594771 | None:intergenic | 25.0% |
| !! | CATTATTAGCATGATTTTAC+AGG | - | chr6_4:86594759-86594778 | Msa1002030:intron | 25.0% |
| !! | ATGATTTTACAGGCAAATAA+TGG | - | chr6_4:86594769-86594788 | Msa1002030:intron | 25.0% |
| !! | TGATTTTACAGGCAAATAAT+GGG | - | chr6_4:86594770-86594789 | Msa1002030:intron | 25.0% |
| ! | AATACAAGAACTAAATCGAA+AGG | - | chr6_4:86594981-86595000 | Msa1002030:intron | 25.0% |
| ! | TTTCTTAATTTCTCCATTTG+AGG | + | chr6_4:86595012-86595031 | None:intergenic | 25.0% |
| !!! | TATGTTTTTATATTCTGCAG+GGG | - | chr6_4:86595057-86595076 | Msa1002030:intron | 25.0% |
| !! | GAAATTGAAAAAGAAGGTAT+TGG | - | chr6_4:86595145-86595164 | Msa1002030:intron | 25.0% |
| ! | TATGGAACAAAAGATAAGAA+TGG | - | chr6_4:86595278-86595297 | Msa1002030:intron | 25.0% |
| ! | ATCCTCCTTAATTAGAATAT+TGG | + | chr6_4:86594084-86594103 | None:intergenic | 25.0% |
| ! | TGATAAAAGTTTGAACAATG+AGG | + | chr6_4:86594108-86594127 | None:intergenic | 25.0% |
| !! | ATTTGAACTTAGAGAAGTAT+TGG | + | chr6_4:86594417-86594436 | None:intergenic | 25.0% |
| ! | AAGAATACTGATAATTCCTT+AGG | - | chr6_4:86594529-86594548 | Msa1002030:intron | 25.0% |
| !! | ATACATCTAAAACATTCCTA+AGG | + | chr6_4:86594548-86594567 | None:intergenic | 25.0% |
| !! | AATACAGCTGAAAATCTTTT+TGG | - | chr6_4:86594673-86594692 | Msa1002030:intron | 25.0% |
| ! | CTAATAATGAAATGTTTGGA+TGG | + | chr6_4:86594748-86594767 | None:intergenic | 25.0% |
| ! | CATGCTAATAATGAAATGTT+TGG | + | chr6_4:86594752-86594771 | None:intergenic | 25.0% |
| !! | CATTATTAGCATGATTTTAC+AGG | - | chr6_4:86594759-86594778 | Msa1002030:intron | 25.0% |
| !! | ATGATTTTACAGGCAAATAA+TGG | - | chr6_4:86594769-86594788 | Msa1002030:intron | 25.0% |
| !! | TGATTTTACAGGCAAATAAT+GGG | - | chr6_4:86594770-86594789 | Msa1002030:intron | 25.0% |
| ! | AATACAAGAACTAAATCGAA+AGG | - | chr6_4:86594981-86595000 | Msa1002030:intron | 25.0% |
| ! | TTTCTTAATTTCTCCATTTG+AGG | + | chr6_4:86595012-86595031 | None:intergenic | 25.0% |
| !!! | TATGTTTTTATATTCTGCAG+GGG | - | chr6_4:86595057-86595076 | Msa1002030:intron | 25.0% |
| !! | GAAATTGAAAAAGAAGGTAT+TGG | - | chr6_4:86595145-86595164 | Msa1002030:intron | 25.0% |
| ! | TATGGAACAAAAGATAAGAA+TGG | - | chr6_4:86595278-86595297 | Msa1002030:intron | 25.0% |
| !! | TTAAGTAGAGGTGTTAATCA+AGG | - | chr6_4:86594006-86594025 | Msa1002030:CDS | 30.0% |
| GACCAATATTCTAATTAAGG+AGG | - | chr6_4:86594079-86594098 | Msa1002030:CDS | 30.0% | |
| GAATTCGTTGTTTGTAACAT+GGG | + | chr6_4:86594174-86594193 | None:intergenic | 30.0% | |
| TGAATTCGTTGTTTGTAACA+TGG | + | chr6_4:86594175-86594194 | None:intergenic | 30.0% | |
| ! | TGTTATGTTATCTTTCTAGC+AGG | + | chr6_4:86594278-86594297 | None:intergenic | 30.0% |
| CTAGAAAGATAACATAACAC+AGG | - | chr6_4:86594279-86594298 | Msa1002030:CDS | 30.0% | |
| ! | AGATGTGCAATAGAACTTTT+CGG | - | chr6_4:86594370-86594389 | Msa1002030:intron | 30.0% |
| TCATCGTTTAAGAGTTAAGA+AGG | - | chr6_4:86594479-86594498 | Msa1002030:intron | 30.0% | |
| ! | AAAATCTCGAGTACGATTTT+AGG | - | chr6_4:86594502-86594521 | Msa1002030:intron | 30.0% |
| GATAGTTCATTATCAAGAGT+AGG | + | chr6_4:86594714-86594733 | None:intergenic | 30.0% | |
| !! | ATAATGGGTGAAGAATTATC+AGG | - | chr6_4:86594785-86594804 | Msa1002030:intron | 30.0% |
| TTTGACAGTCAAAGAATTAC+AGG | - | chr6_4:86594808-86594827 | Msa1002030:intron | 30.0% | |
| TTGACAGTCAAAGAATTACA+GGG | - | chr6_4:86594809-86594828 | Msa1002030:intron | 30.0% | |
| !! | CTTGAGAACTGTATTTTTGA+TGG | + | chr6_4:86594895-86594914 | None:intergenic | 30.0% |
| AGTCAATTGTATGTCAAGTA+TGG | + | chr6_4:86594934-86594953 | None:intergenic | 30.0% | |
| !! | ATGTTTTTATATTCTGCAGG+GGG | - | chr6_4:86595058-86595077 | Msa1002030:intron | 30.0% |
| !! | AAAGAAGGTATTGGTTTGTA+TGG | - | chr6_4:86595154-86595173 | Msa1002030:intron | 30.0% |
| ! | GAGTTAGTGAAAATCTCTTT+TGG | + | chr6_4:86595253-86595272 | None:intergenic | 30.0% |
| ! | AAAGAGATTTTCACTAACTC+AGG | - | chr6_4:86595253-86595272 | Msa1002030:intron | 30.0% |
| TACAAAACTAGGGTATGATT+TGG | - | chr6_4:86595418-86595437 | Msa1002030:intron | 30.0% | |
| !! | TTAAGTAGAGGTGTTAATCA+AGG | - | chr6_4:86594006-86594025 | Msa1002030:CDS | 30.0% |
| GACCAATATTCTAATTAAGG+AGG | - | chr6_4:86594079-86594098 | Msa1002030:CDS | 30.0% | |
| GAATTCGTTGTTTGTAACAT+GGG | + | chr6_4:86594174-86594193 | None:intergenic | 30.0% | |
| TGAATTCGTTGTTTGTAACA+TGG | + | chr6_4:86594175-86594194 | None:intergenic | 30.0% | |
| ! | TGTTATGTTATCTTTCTAGC+AGG | + | chr6_4:86594278-86594297 | None:intergenic | 30.0% |
| CTAGAAAGATAACATAACAC+AGG | - | chr6_4:86594279-86594298 | Msa1002030:CDS | 30.0% | |
| ! | AGATGTGCAATAGAACTTTT+CGG | - | chr6_4:86594370-86594389 | Msa1002030:intron | 30.0% |
| TCATCGTTTAAGAGTTAAGA+AGG | - | chr6_4:86594479-86594498 | Msa1002030:intron | 30.0% | |
| ! | AAAATCTCGAGTACGATTTT+AGG | - | chr6_4:86594502-86594521 | Msa1002030:intron | 30.0% |
| GATAGTTCATTATCAAGAGT+AGG | + | chr6_4:86594714-86594733 | None:intergenic | 30.0% | |
| !! | ATAATGGGTGAAGAATTATC+AGG | - | chr6_4:86594785-86594804 | Msa1002030:intron | 30.0% |
| TTTGACAGTCAAAGAATTAC+AGG | - | chr6_4:86594808-86594827 | Msa1002030:intron | 30.0% | |
| TTGACAGTCAAAGAATTACA+GGG | - | chr6_4:86594809-86594828 | Msa1002030:intron | 30.0% | |
| !! | CTTGAGAACTGTATTTTTGA+TGG | + | chr6_4:86594895-86594914 | None:intergenic | 30.0% |
| AGTCAATTGTATGTCAAGTA+TGG | + | chr6_4:86594934-86594953 | None:intergenic | 30.0% | |
| !! | ATGTTTTTATATTCTGCAGG+GGG | - | chr6_4:86595058-86595077 | Msa1002030:intron | 30.0% |
| !! | AAAGAAGGTATTGGTTTGTA+TGG | - | chr6_4:86595154-86595173 | Msa1002030:intron | 30.0% |
| ! | GAGTTAGTGAAAATCTCTTT+TGG | + | chr6_4:86595253-86595272 | None:intergenic | 30.0% |
| ! | AAAGAGATTTTCACTAACTC+AGG | - | chr6_4:86595253-86595272 | Msa1002030:intron | 30.0% |
| TACAAAACTAGGGTATGATT+TGG | - | chr6_4:86595418-86595437 | Msa1002030:intron | 30.0% | |
| GTTATGAGTGCATTAAGTAG+AGG | - | chr6_4:86593994-86594013 | Msa1002030:CDS | 35.0% | |
| TAACATAACACAGGTGAAGA+TGG | - | chr6_4:86594288-86594307 | Msa1002030:CDS | 35.0% | |
| ATGCAAAATCTGAACCAACT+AGG | + | chr6_4:86594328-86594347 | None:intergenic | 35.0% | |
| !! | TAGTTGGTTCAGATTTTGCA+TGG | - | chr6_4:86594327-86594346 | Msa1002030:CDS | 35.0% |
| ! | CAGATTTTGCATGGTGATAA+AGG | - | chr6_4:86594336-86594355 | Msa1002030:intron | 35.0% |
| TCTATTGCACATCTTTCCAA+TGG | + | chr6_4:86594364-86594383 | None:intergenic | 35.0% | |
| ! | GCACTTCTATTGTCTTTTCA+GGG | + | chr6_4:86594591-86594610 | None:intergenic | 35.0% |
| ! | TGCACTTCTATTGTCTTTTC+AGG | + | chr6_4:86594592-86594611 | None:intergenic | 35.0% |
| AGTCAAAGAATTACAGGGTT+TGG | - | chr6_4:86594814-86594833 | Msa1002030:intron | 35.0% | |
| !! | GAGAACTGTATTTTTGATGG+AGG | + | chr6_4:86594892-86594911 | None:intergenic | 35.0% |
| ! | GACATACAATTGACTTATGC+AGG | - | chr6_4:86594939-86594958 | Msa1002030:intron | 35.0% |
| ! | TATGCAGGAGCAACTTTTTA+TGG | - | chr6_4:86594954-86594973 | Msa1002030:intron | 35.0% |
| ! | GATACAGTTCGACATTTTCT+TGG | + | chr6_4:86595094-86595113 | None:intergenic | 35.0% |
| AAATGTCGAACTGTATCGTA+AGG | - | chr6_4:86595097-86595116 | Msa1002030:intron | 35.0% | |
| TTGGAGTTCAGAATATAGCA+AGG | + | chr6_4:86595234-86595253 | None:intergenic | 35.0% | |
| ! | TTTTCACTAACTCAGGTCTA+TGG | - | chr6_4:86595260-86595279 | Msa1002030:intron | 35.0% |
| !!! | AGAGTTTTGAGTCTCACAAA+TGG | - | chr6_4:86595308-86595327 | Msa1002030:intron | 35.0% |
| !!! | TAGTTTTGTAGTTCCTGAAG+GGG | + | chr6_4:86595408-86595427 | None:intergenic | 35.0% |
| !!! | CTAGTTTTGTAGTTCCTGAA+GGG | + | chr6_4:86595409-86595428 | None:intergenic | 35.0% |
| CTTCAGGAACTACAAAACTA+GGG | - | chr6_4:86595408-86595427 | Msa1002030:intron | 35.0% | |
| GTTATGAGTGCATTAAGTAG+AGG | - | chr6_4:86593994-86594013 | Msa1002030:CDS | 35.0% | |
| TAACATAACACAGGTGAAGA+TGG | - | chr6_4:86594288-86594307 | Msa1002030:CDS | 35.0% | |
| ATGCAAAATCTGAACCAACT+AGG | + | chr6_4:86594328-86594347 | None:intergenic | 35.0% | |
| !! | TAGTTGGTTCAGATTTTGCA+TGG | - | chr6_4:86594327-86594346 | Msa1002030:CDS | 35.0% |
| ! | CAGATTTTGCATGGTGATAA+AGG | - | chr6_4:86594336-86594355 | Msa1002030:intron | 35.0% |
| TCTATTGCACATCTTTCCAA+TGG | + | chr6_4:86594364-86594383 | None:intergenic | 35.0% | |
| ! | GCACTTCTATTGTCTTTTCA+GGG | + | chr6_4:86594591-86594610 | None:intergenic | 35.0% |
| ! | TGCACTTCTATTGTCTTTTC+AGG | + | chr6_4:86594592-86594611 | None:intergenic | 35.0% |
| AGTCAAAGAATTACAGGGTT+TGG | - | chr6_4:86594814-86594833 | Msa1002030:intron | 35.0% | |
| !! | GAGAACTGTATTTTTGATGG+AGG | + | chr6_4:86594892-86594911 | None:intergenic | 35.0% |
| ! | GACATACAATTGACTTATGC+AGG | - | chr6_4:86594939-86594958 | Msa1002030:intron | 35.0% |
| ! | TATGCAGGAGCAACTTTTTA+TGG | - | chr6_4:86594954-86594973 | Msa1002030:intron | 35.0% |
| ! | GATACAGTTCGACATTTTCT+TGG | + | chr6_4:86595094-86595113 | None:intergenic | 35.0% |
| AAATGTCGAACTGTATCGTA+AGG | - | chr6_4:86595097-86595116 | Msa1002030:intron | 35.0% | |
| TTGGAGTTCAGAATATAGCA+AGG | + | chr6_4:86595234-86595253 | None:intergenic | 35.0% | |
| ! | TTTTCACTAACTCAGGTCTA+TGG | - | chr6_4:86595260-86595279 | Msa1002030:intron | 35.0% |
| !!! | AGAGTTTTGAGTCTCACAAA+TGG | - | chr6_4:86595308-86595327 | Msa1002030:intron | 35.0% |
| !!! | TAGTTTTGTAGTTCCTGAAG+GGG | + | chr6_4:86595408-86595427 | None:intergenic | 35.0% |
| !!! | CTAGTTTTGTAGTTCCTGAA+GGG | + | chr6_4:86595409-86595428 | None:intergenic | 35.0% |
| CTTCAGGAACTACAAAACTA+GGG | - | chr6_4:86595408-86595427 | Msa1002030:intron | 35.0% | |
| TTAGAATGATGCGACCTAGT+TGG | - | chr6_4:86594311-86594330 | Msa1002030:CDS | 40.0% | |
| GGCTACACTGTATTACTGTA+TGG | + | chr6_4:86594396-86594415 | None:intergenic | 40.0% | |
| TCAGAGTGAGACAATCATTG+AGG | - | chr6_4:86594450-86594469 | Msa1002030:intron | 40.0% | |
| !! | GTCTTTTCAGGGTTGTTACT+CGG | + | chr6_4:86594580-86594599 | None:intergenic | 40.0% |
| ! | TTTTCATACGAACACCACGA+AGG | + | chr6_4:86594859-86594878 | None:intergenic | 40.0% |
| TCGTGGTGTTCGTATGAAAA+AGG | - | chr6_4:86594859-86594878 | Msa1002030:intron | 40.0% | |
| TTGAGTCTCACAAATGGTGT+AGG | - | chr6_4:86595314-86595333 | Msa1002030:intron | 40.0% | |
| !!! | CCTAGTTTTGTAGTTCCTGA+AGG | + | chr6_4:86595410-86595429 | None:intergenic | 40.0% |
| CCTTCAGGAACTACAAAACT+AGG | - | chr6_4:86595407-86595426 | Msa1002030:intron | 40.0% | |
| TTAGAATGATGCGACCTAGT+TGG | - | chr6_4:86594311-86594330 | Msa1002030:CDS | 40.0% | |
| GGCTACACTGTATTACTGTA+TGG | + | chr6_4:86594396-86594415 | None:intergenic | 40.0% | |
| TCAGAGTGAGACAATCATTG+AGG | - | chr6_4:86594450-86594469 | Msa1002030:intron | 40.0% | |
| !! | GTCTTTTCAGGGTTGTTACT+CGG | + | chr6_4:86594580-86594599 | None:intergenic | 40.0% |
| ! | TTTTCATACGAACACCACGA+AGG | + | chr6_4:86594859-86594878 | None:intergenic | 40.0% |
| TCGTGGTGTTCGTATGAAAA+AGG | - | chr6_4:86594859-86594878 | Msa1002030:intron | 40.0% | |
| TTGAGTCTCACAAATGGTGT+AGG | - | chr6_4:86595314-86595333 | Msa1002030:intron | 40.0% | |
| !!! | CCTAGTTTTGTAGTTCCTGA+AGG | + | chr6_4:86595410-86595429 | None:intergenic | 40.0% |
| CCTTCAGGAACTACAAAACT+AGG | - | chr6_4:86595407-86595426 | Msa1002030:intron | 40.0% | |
| !! | CATGGTGATAAAGGCACCAT+TGG | - | chr6_4:86594345-86594364 | Msa1002030:intron | 45.0% |
| ACAGGGTTTGGAGAACCAAT+TGG | - | chr6_4:86594826-86594845 | Msa1002030:intron | 45.0% | |
| ! | CACGAAGGCTGATTTCCAAT+TGG | + | chr6_4:86594844-86594863 | None:intergenic | 45.0% |
| CAATTGGAAATCAGCCTTCG+TGG | - | chr6_4:86594842-86594861 | Msa1002030:intron | 45.0% | |
| TCGAAAGGTCAGTCCTCAAA+TGG | - | chr6_4:86594996-86595015 | Msa1002030:intron | 45.0% | |
| CTCACAAATGGTGTAGGCAT+AGG | - | chr6_4:86595320-86595339 | Msa1002030:intron | 45.0% | |
| !! | CATGGTGATAAAGGCACCAT+TGG | - | chr6_4:86594345-86594364 | Msa1002030:intron | 45.0% |
| ACAGGGTTTGGAGAACCAAT+TGG | - | chr6_4:86594826-86594845 | Msa1002030:intron | 45.0% | |
| ! | CACGAAGGCTGATTTCCAAT+TGG | + | chr6_4:86594844-86594863 | None:intergenic | 45.0% |
| CAATTGGAAATCAGCCTTCG+TGG | - | chr6_4:86594842-86594861 | Msa1002030:intron | 45.0% | |
| TCGAAAGGTCAGTCCTCAAA+TGG | - | chr6_4:86594996-86595015 | Msa1002030:intron | 45.0% | |
| CTCACAAATGGTGTAGGCAT+AGG | - | chr6_4:86595320-86595339 | Msa1002030:intron | 45.0% | |
| TTCAGGGTTGTTACTCGGAG+AGG | + | chr6_4:86594575-86594594 | None:intergenic | 50.0% | |
| TTCAGGGTTGTTACTCGGAG+AGG | + | chr6_4:86594575-86594594 | None:intergenic | 50.0% | |
| TGGCTGAGCTGGAGATTCAC+AGG | + | chr6_4:86595362-86595381 | None:intergenic | 55.0% | |
| ! | TGTAGTGCTGTTGCTGTGGC+TGG | + | chr6_4:86595382-86595401 | None:intergenic | 55.0% |
| GCCACAGCAACAGCACTACA+AGG | - | chr6_4:86595382-86595401 | Msa1002030:intron | 55.0% | |
| ! | GCCTTGTAGTGCTGTTGCTG+TGG | + | chr6_4:86595386-86595405 | None:intergenic | 55.0% |
| TGGCTGAGCTGGAGATTCAC+AGG | + | chr6_4:86595362-86595381 | None:intergenic | 55.0% | |
| ! | TGTAGTGCTGTTGCTGTGGC+TGG | + | chr6_4:86595382-86595401 | None:intergenic | 55.0% |
| GCCACAGCAACAGCACTACA+AGG | - | chr6_4:86595382-86595401 | Msa1002030:intron | 55.0% | |
| ! | GCCTTGTAGTGCTGTTGCTG+TGG | + | chr6_4:86595386-86595405 | None:intergenic | 55.0% |
| CAGCACTACAAGGCCCCTTC+AGG | - | chr6_4:86595392-86595411 | Msa1002030:intron | 60.0% | |
| CAGCACTACAAGGCCCCTTC+AGG | - | chr6_4:86595392-86595411 | Msa1002030:intron | 60.0% | |
| ! | GTTGCTGTGGCTGGCTGAGC+TGG | + | chr6_4:86595373-86595392 | None:intergenic | 65.0% |
| ! | GTTGCTGTGGCTGGCTGAGC+TGG | + | chr6_4:86595373-86595392 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 86593976 | 86595448 | 86593976 | ID=Msa1002030;Name=Msa1002030 |
| chr6_4 | mRNA | 86593976 | 86595448 | 86593976 | ID=Msa1002030-mRNA-1;Parent=Msa1002030;Name=Msa1002030-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|0.8|0.75|0.8|5|0|134 |
| chr6_4 | exon | 86595444 | 86595448 | 86595444 | ID=Msa1002030-mRNA-1:exon:17016;Parent=Msa1002030-mRNA-1 |
| chr6_4 | exon | 86594544 | 86594643 | 86594544 | ID=Msa1002030-mRNA-1:exon:17015;Parent=Msa1002030-mRNA-1 |
| chr6_4 | exon | 86594422 | 86594463 | 86594422 | ID=Msa1002030-mRNA-1:exon:17014;Parent=Msa1002030-mRNA-1 |
| chr6_4 | exon | 86594264 | 86594347 | 86594264 | ID=Msa1002030-mRNA-1:exon:17013;Parent=Msa1002030-mRNA-1 |
| chr6_4 | exon | 86593976 | 86594149 | 86593976 | ID=Msa1002030-mRNA-1:exon:17012;Parent=Msa1002030-mRNA-1 |
| chr6_4 | CDS | 86595444 | 86595448 | 86595444 | ID=Msa1002030-mRNA-1:cds;Parent=Msa1002030-mRNA-1 |
| chr6_4 | CDS | 86594544 | 86594643 | 86594544 | ID=Msa1002030-mRNA-1:cds;Parent=Msa1002030-mRNA-1 |
| chr6_4 | CDS | 86594422 | 86594463 | 86594422 | ID=Msa1002030-mRNA-1:cds;Parent=Msa1002030-mRNA-1 |
| chr6_4 | CDS | 86594264 | 86594347 | 86594264 | ID=Msa1002030-mRNA-1:cds;Parent=Msa1002030-mRNA-1 |
| chr6_4 | CDS | 86593976 | 86594149 | 86593976 | ID=Msa1002030-mRNA-1:cds;Parent=Msa1002030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
