AlfalfaGEDB | Msa1002280

M. sativa cultivar zhongmu-4 / Msa1002280

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1002280	XP_013452950.1	91.022	401	27	2	20	411	28	428	0.0	743

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1002280	sp\|P0C5E2\|LRL12_ARATH	56.333	300	115	4	85	377	328	618	1.15e-105	328

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1002280	A0A072UD27	91.022	401	27	2	20	411	28	428	0.0	743

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0963430	Msa1002280	0.913463	5.979450e-84	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1002280	MtrunA17_Chr6g0483731	92.084	379	27	1	36	411	2	380	0.0	722
Msa1002280	MtrunA17_Chr5g0423061	54.984	311	123	3	85	387	299	600	3.35e-112	342
Msa1002280	MtrunA17_Chr7g0251121	56.478	301	115	3	84	377	353	644	4.24e-112	343
Msa1002280	MtrunA17_Chr8g0376061	54.902	306	122	3	85	383	323	619	4.36e-111	340
Msa1002280	MtrunA17_Chr6g0467601	54.633	313	123	5	86	389	141	443	6.30e-110	331
Msa1002280	MtrunA17_Chr6g0483931	55.375	307	121	4	84	383	355	652	8.31e-110	337
Msa1002280	MtrunA17_Chr1g0209361	54.817	301	120	3	85	378	330	621	1.29e-107	332
Msa1002280	MtrunA17_Chr1g0209391	53.774	318	124	5	85	388	287	595	5.16e-107	329
Msa1002280	MtrunA17_Chr6g0467631	53.355	313	130	3	84	389	336	639	7.15e-107	329
Msa1002280	MtrunA17_Chr1g0209431	52.318	302	128	3	85	379	325	617	1.38e-102	318

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1002280	AT1G18390.1	56.333	300	115	4	85	377	325	615	4.31e-107	330
Msa1002280	AT1G18390.2	56.333	300	115	4	85	377	331	621	1.21e-106	328
Msa1002280	AT1G25390.1	53.488	301	123	3	85	377	278	569	8.61e-105	323
Msa1002280	AT1G25390.2	53.488	301	123	3	85	377	278	569	8.61e-105	323
Msa1002280	AT1G66880.3	50.000	316	140	4	76	384	326	630	5.09e-99	309
Msa1002280	AT1G66880.2	50.000	316	140	4	76	384	568	872	1.39e-96	309
Msa1002280	AT5G38210.3	51.667	300	127	4	84	376	340	628	3.47e-96	302
Msa1002280	AT5G38210.2	51.667	300	127	4	84	376	358	646	8.44e-96	301
Msa1002280	AT5G38210.1	51.667	300	127	4	84	376	346	634	2.44e-95	300
Msa1002280	AT1G66880.1	49.686	318	142	4	76	386	947	1253	2.25e-94	308

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Find 78 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCGATGTTTACAGCTT+CGG	0.444019	6_4:-87784310	Msa1002280:CDS
AACTCCCGGTTATATTGATC+CGG	0.495345	6_4:-87784362	Msa1002280:CDS
AAGATATAATATTCCAACTC+TGG	0.505963	6_4:+87783915	None:intergenic
AAGCTTGTCGACCCGACTCT+TGG	0.357967	6_4:-87784178	Msa1002280:CDS
AAGGCGTGACAATCCAAAGT+CGG	0.645801	6_4:+87784426	None:intergenic
AAGTGAAACGGTAGGTGCAG+TGG	0.606023	6_4:-87784134	Msa1002280:CDS
AATAGTAGAATACTTGGGAA+GGG	0.626455	6_4:-87785595	Msa1002280:CDS
AATGCAAAAGTTGCCGACTT+TGG	0.388514	6_4:-87784439	Msa1002280:CDS
AATTGGATAAGTGAAACGGT+AGG	0.713888	6_4:-87784142	Msa1002280:CDS
ACATGATAATAAGCTTGAGG+AGG	0.655024	6_4:-87784749	Msa1002280:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTCGGTAGATAATAGAATT+TGG	+	chr6_4:87784220-87784239	None:intergenic	30.0%
GAGAATTACACCTTCAAATA+TGG	-	chr6_4:87784398-87784417	Msa1002280:CDS	30.0%
TGATAGTTTGGAGAACTTAA+GGG	+	chr6_4:87784526-87784545	None:intergenic	30.0%
AGTTCTCCAAACTATCAATA+TGG	-	chr6_4:87784529-87784548	Msa1002280:CDS	30.0%
AAGATCATTCATAATTCCGA+CGG	-	chr6_4:87784629-87784648	Msa1002280:CDS	30.0%
GGGACATTATTATTACGAAA+GGG	-	chr6_4:87784650-87784669	Msa1002280:CDS	30.0%
AATAGTACTCTTTATTCCGA+AGG	-	chr6_4:87784684-87784703	Msa1002280:CDS	30.0%
ATAGTACTCTTTATTCCGAA+GGG	-	chr6_4:87784685-87784704	Msa1002280:CDS	30.0%
TTCGATAATATATGTCCCTT+CGG	+	chr6_4:87784703-87784722	None:intergenic	30.0%
AAGGGACATATATTATCGAA+AGG	-	chr6_4:87784703-87784722	Msa1002280:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	87783789	87790149	87783789	ID=Msa1002280;Name=Msa1002280
chr6_4	mRNA	87783789	87790149	87783789	ID=Msa1002280-mRNA-1;Parent=Msa1002280;Name=Msa1002280-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0\|0.25\|0.2\|0.8\|0.25\|0.2\|5\|151\|411
chr6_4	exon	87783789	87784832	87783789	ID=Msa1002280-mRNA-1:exon:17116;Parent=Msa1002280-mRNA-1
chr6_4	exon	87785572	87785791	87785572	ID=Msa1002280-mRNA-1:exon:17115;Parent=Msa1002280-mRNA-1
chr6_4	exon	87785810	87785878	87785810	ID=Msa1002280-mRNA-1:exon:17114;Parent=Msa1002280-mRNA-1
chr6_4	exon	87786622	87786669	87786622	ID=Msa1002280-mRNA-1:exon:17113;Parent=Msa1002280-mRNA-1
chr6_4	exon	87790144	87790149	87790144	ID=Msa1002280-mRNA-1:exon:17112;Parent=Msa1002280-mRNA-1
chr6_4	CDS	87790144	87790149	87790144	ID=Msa1002280-mRNA-1:cds;Parent=Msa1002280-mRNA-1
chr6_4	CDS	87786622	87786669	87786622	ID=Msa1002280-mRNA-1:cds;Parent=Msa1002280-mRNA-1
chr6_4	CDS	87785810	87785878	87785810	ID=Msa1002280-mRNA-1:cds;Parent=Msa1002280-mRNA-1
chr6_4	CDS	87785572	87785791	87785572	ID=Msa1002280-mRNA-1:cds;Parent=Msa1002280-mRNA-1
chr6_4	CDS	87783940	87784832	87783940	ID=Msa1002280-mRNA-1:cds;Parent=Msa1002280-mRNA-1
chr6_4	three_prime_UTR	87783789	87783939	87783789	ID=Msa1002280-mRNA-1:three_prime_utr;Parent=Msa1002280-mRNA-1

Gene Sequence

>Msa1002280

ATGGGAAATTGTTTACCATTTTCTGCTTTACGCGCTTCTTTCACTACAGAGAACAGTTTTGAGGAGAAGGGTAGCAATTTCGTGACTGTGAATTCTGAGAAGGCAATCAACAATGATCAAACGGTTACAAGCAAATGTAATGAATCAGTTCCGGTGAATGTGATTTCTGAGATACCAAGTAGTCATGGTGCTGAATCATTGATGATTGATTCTGAGGTCCAGAACAACCAATGTAATATTACTGAGAGTGAGATATTCAAGTATTCTGAACTTGAAGAAGCTACCAGTAACTTTGACAATAGTAGAATACTTGGGAAGGGAGGCTATGGAACAGTTTACTCCGGAACACTTAAAGATGGGCGTCTTGTTGCAATAAAGCGCTTACATAAAGACGTGTTAAGGTTACATGATAATAAGCTTGAGGAGGAAACATTAAGAAAGTTCATCAATGAAGTTTCAATGTTAACTCGCATGAGGCACGAAAATCTTGTCCAACTGTATGGTTGCACCTCTCCTCAAACACGTGAACTACTTCTCGTGCAAGAATACGTTCCGAATGGAACTGTGTCTTCTCGTCTTCATAAACACAAGTTCCCGTGGTCTACTCGACTAAGCGTCGCATTACAAACTGCAAGTGCACTGGCTTATCTTCATGCTTCCAATGTTATCCACCGTGATGTGAATACTAGTAATATTCTACTTGACAAAAGTTTGAATGCAAAAGTTGCCGACTTTGGATTGTCACGCCTTGTCCCGCACGATGCCACTCATGTTACAACCGATCCTGCTGGAACTCCCGGTTATATTGATCCGGAGTATTACGAGCATTGTCATCTTTCGGATAAAAGCGATGTTTACAGCTTCGGAGTGATATTGGTTGAGTTGATATCATCTTTGCCTGCAGTTAGCGAGGATGAAAAACAACCTTTTCTTTCTGATTTCGCTATGGATAAAATTCTTAAGGGACAACTCGAAAAGCTTGTCGACCCGACTCTTGGATTTCAATCAGACAATTGGATAAGTGAAACGGTAGGTGCAGTGGCAGAGTTAGCATTTGGCTGCTTACAACCTCAAAGAGACATGAGACCTTCCATGAGTGAGGTTTTGAATACTCTTGAGAGCATAAAAAGTGGAAGCTCTCAAAAAGCTCTTAAACGGGGTTCAAATAATTGTCATAATGCTACCAAAGTTCACATTGTGTCACGTTTGCCAGATGATTATTTTGAGAAGAAATAG

Protein sequence

>Msa1002280

MGNCLPFSALRASFTTENSFEEKGSNFVTVNSEKAINNDQTVTSKCNESVPVNVISEIPSSHGAESLMIDSEVQNNQCNITESEIFKYSELEEATSNFDNSRILGKGGYGTVYSGTLKDGRLVAIKRLHKDVLRLHDNKLEEETLRKFINEVSMLTRMRHENLVQLYGCTSPQTRELLLVQEYVPNGTVSSRLHKHKFPWSTRLSVALQTASALAYLHASNVIHRDVNTSNILLDKSLNAKVADFGLSRLVPHDATHVTTDPAGTPGYIDPEYYEHCHLSDKSDVYSFGVILVELISSLPAVSEDEKQPFLSDFAMDKILKGQLEKLVDPTLGFQSDNWISETVGAVAELAFGCLQPQRDMRPSMSEVLNTLESIKSGSSQKALKRGSNNCHNATKVHIVSRLPDDYFEKK*