Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1007880 | XP_003621331.1 | 86.104 | 367 | 51 | 0 | 1 | 367 | 1 | 367 | 0.0 | 667 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1007880 | sp|P93324|CHOMT_MEDSA | 62.125 | 367 | 130 | 3 | 8 | 367 | 8 | 372 | 1.09e-170 | 483 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1007880 | G7L359 | 86.104 | 367 | 51 | 0 | 1 | 367 | 1 | 367 | 0.0 | 667 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0698280 | Msa1007880 | 0.805246 | 1.464768e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1007880 | MtrunA17_Chr7g0218181 | 86.104 | 367 | 51 | 0 | 1 | 367 | 1 | 367 | 0.0 | 667 |
| Msa1007880 | MtrunA17_Chr7g0218131 | 79.301 | 372 | 70 | 3 | 1 | 367 | 1 | 370 | 0.0 | 610 |
| Msa1007880 | MtrunA17_Chr7g0218261 | 75.068 | 369 | 86 | 2 | 3 | 367 | 2 | 368 | 0.0 | 580 |
| Msa1007880 | MtrunA17_Chr7g0218211 | 73.171 | 369 | 94 | 2 | 3 | 367 | 2 | 369 | 0.0 | 573 |
| Msa1007880 | MtrunA17_Chr7g0218301 | 70.479 | 376 | 101 | 3 | 1 | 367 | 1 | 375 | 0.0 | 546 |
| Msa1007880 | MtrunA17_Chr7g0218271 | 69.149 | 376 | 106 | 3 | 1 | 367 | 1 | 375 | 0.0 | 543 |
| Msa1007880 | MtrunA17_Chr2g0307521 | 66.216 | 370 | 115 | 3 | 1 | 367 | 1 | 363 | 0.0 | 510 |
| Msa1007880 | MtrunA17_Chr1g0200491 | 62.125 | 367 | 130 | 3 | 8 | 367 | 8 | 372 | 1.58e-172 | 485 |
| Msa1007880 | MtrunA17_Chr1g0163601 | 50.538 | 372 | 171 | 6 | 5 | 367 | 3 | 370 | 3.68e-132 | 382 |
| Msa1007880 | MtrunA17_Chr1g0163611 | 49.194 | 372 | 176 | 6 | 5 | 367 | 3 | 370 | 1.13e-129 | 376 |
| Msa1007880 | MtrunA17_Chr3g0085211 | 52.125 | 353 | 159 | 6 | 21 | 367 | 22 | 370 | 6.71e-121 | 353 |
| Msa1007880 | MtrunA17_Chr3g0085201 | 51.247 | 361 | 166 | 6 | 13 | 367 | 1 | 357 | 3.68e-120 | 351 |
| Msa1007880 | MtrunA17_Chr1g0163621 | 49.307 | 361 | 170 | 6 | 16 | 367 | 28 | 384 | 4.79e-120 | 352 |
| Msa1007880 | MtrunA17_Chr3g0128011 | 46.307 | 352 | 180 | 6 | 21 | 367 | 70 | 417 | 4.01e-105 | 315 |
| Msa1007880 | MtrunA17_Chr5g0448091 | 40.166 | 361 | 201 | 8 | 16 | 367 | 9 | 363 | 1.37e-90 | 276 |
| Msa1007880 | MtrunA17_Chr7g0276401 | 40.650 | 369 | 207 | 9 | 5 | 367 | 13 | 375 | 4.35e-88 | 270 |
| Msa1007880 | MtrunA17_Chr8g0367441 | 39.529 | 382 | 211 | 11 | 1 | 367 | 1 | 377 | 2.10e-86 | 266 |
| Msa1007880 | MtrunA17_Chr7g0276411 | 39.945 | 363 | 206 | 7 | 13 | 367 | 4 | 362 | 5.27e-84 | 259 |
| Msa1007880 | MtrunA17_Chr8g0367451 | 38.682 | 349 | 203 | 7 | 14 | 354 | 19 | 364 | 4.18e-80 | 249 |
| Msa1007880 | MtrunA17_Chr8g0367491 | 38.109 | 349 | 205 | 7 | 26 | 367 | 32 | 376 | 5.01e-78 | 244 |
| Msa1007880 | MtrunA17_Chr8g0367501 | 38.182 | 330 | 194 | 5 | 35 | 357 | 28 | 354 | 7.77e-75 | 237 |
| Msa1007880 | MtrunA17_Chr8g0367381 | 40.000 | 330 | 166 | 11 | 14 | 334 | 20 | 326 | 1.74e-71 | 226 |
| Msa1007880 | MtrunA17_Chr8g0345851 | 41.877 | 277 | 153 | 5 | 89 | 360 | 13 | 286 | 4.53e-71 | 224 |
| Msa1007880 | MtrunA17_Chr2g0314271 | 38.344 | 326 | 182 | 10 | 33 | 348 | 20 | 336 | 1.16e-61 | 201 |
| Msa1007880 | MtrunA17_Chr3g0130011 | 36.193 | 373 | 208 | 12 | 9 | 367 | 2 | 358 | 4.50e-59 | 195 |
| Msa1007880 | MtrunA17_Chr3g0130061 | 36.905 | 336 | 191 | 8 | 26 | 350 | 17 | 342 | 1.09e-57 | 191 |
| Msa1007880 | MtrunA17_Chr4g0022021 | 34.891 | 321 | 192 | 10 | 41 | 353 | 44 | 355 | 7.02e-51 | 174 |
| Msa1007880 | MtrunA17_Chr4g0021981 | 35.385 | 325 | 185 | 11 | 41 | 353 | 44 | 355 | 1.11e-50 | 173 |
| Msa1007880 | MtrunA17_Chr3g0121301 | 34.062 | 320 | 195 | 9 | 39 | 352 | 38 | 347 | 2.06e-50 | 172 |
| Msa1007880 | MtrunA17_Chr6g0482291 | 42.162 | 185 | 97 | 3 | 184 | 367 | 1 | 176 | 2.31e-46 | 156 |
| Msa1007880 | MtrunA17_Chr1g0188371 | 30.747 | 348 | 211 | 10 | 20 | 346 | 2 | 340 | 2.87e-45 | 159 |
| Msa1007880 | MtrunA17_Chr1g0188391 | 31.111 | 315 | 204 | 6 | 41 | 347 | 33 | 342 | 3.55e-44 | 156 |
| Msa1007880 | MtrunA17_Chr5g0432251 | 30.479 | 292 | 190 | 6 | 65 | 348 | 55 | 341 | 2.24e-43 | 154 |
| Msa1007880 | MtrunA17_Chr7g0219161 | 29.310 | 290 | 194 | 5 | 66 | 352 | 62 | 343 | 2.11e-40 | 146 |
| Msa1007880 | MtrunA17_Chr4g0014561 | 32.647 | 340 | 202 | 9 | 40 | 362 | 32 | 361 | 2.30e-39 | 143 |
| Msa1007880 | MtrunA17_Chr5g0432301 | 29.897 | 291 | 193 | 6 | 62 | 347 | 57 | 341 | 2.38e-39 | 143 |
| Msa1007880 | MtrunA17_Chr5g0432241 | 31.752 | 274 | 177 | 5 | 80 | 348 | 74 | 342 | 4.43e-39 | 142 |
| Msa1007880 | MtrunA17_Chr4g0014681 | 32.353 | 340 | 203 | 9 | 40 | 362 | 32 | 361 | 1.82e-38 | 140 |
| Msa1007880 | MtrunA17_Chr7g0223241 | 30.640 | 297 | 170 | 10 | 81 | 365 | 73 | 345 | 2.43e-38 | 140 |
| Msa1007880 | MtrunA17_Chr7g0223231 | 30.241 | 291 | 179 | 9 | 81 | 365 | 73 | 345 | 4.21e-38 | 139 |
| Msa1007880 | MtrunA17_Chr4g0040621 | 29.508 | 366 | 229 | 12 | 6 | 353 | 2 | 356 | 6.13e-38 | 139 |
| Msa1007880 | MtrunA17_Chr4g0046361 | 30.699 | 329 | 213 | 8 | 34 | 353 | 26 | 348 | 6.70e-38 | 139 |
| Msa1007880 | MtrunA17_Chr7g0219141 | 29.043 | 303 | 200 | 7 | 66 | 365 | 62 | 352 | 1.34e-37 | 138 |
| Msa1007880 | MtrunA17_Chr4g0046531 | 27.893 | 337 | 224 | 7 | 38 | 366 | 392 | 717 | 9.04e-37 | 141 |
| Msa1007880 | MtrunA17_Chr4g0046531 | 29.268 | 328 | 194 | 9 | 38 | 347 | 30 | 337 | 5.20e-36 | 139 |
| Msa1007880 | MtrunA17_Chr5g0432211 | 33.333 | 222 | 143 | 3 | 137 | 353 | 111 | 332 | 1.79e-36 | 135 |
| Msa1007880 | MtrunA17_Chr4g0014641 | 30.882 | 340 | 208 | 9 | 40 | 362 | 32 | 361 | 5.12e-36 | 134 |
| Msa1007880 | MtrunA17_Chr6g0476581 | 72.222 | 90 | 21 | 2 | 1 | 86 | 1 | 90 | 1.25e-35 | 126 |
| Msa1007880 | MtrunA17_Chr8g0367401 | 49.091 | 110 | 56 | 0 | 161 | 270 | 2 | 111 | 3.91e-34 | 123 |
| Msa1007880 | MtrunA17_Chr4g0046341 | 31.250 | 336 | 205 | 8 | 34 | 353 | 26 | 351 | 1.40e-32 | 125 |
| Msa1007880 | MtrunA17_Chr1g0170941 | 71.053 | 76 | 22 | 0 | 192 | 267 | 1 | 76 | 1.62e-32 | 116 |
| Msa1007880 | MtrunA17_Chr5g0432261 | 38.000 | 150 | 90 | 1 | 202 | 348 | 160 | 309 | 2.75e-30 | 118 |
| Msa1007880 | MtrunA17_Chr4g0014661 | 28.012 | 332 | 220 | 8 | 41 | 362 | 33 | 355 | 2.34e-27 | 110 |
| Msa1007880 | MtrunA17_Chr4g0014591 | 28.358 | 335 | 215 | 10 | 41 | 362 | 33 | 355 | 1.77e-25 | 105 |
| Msa1007880 | MtrunA17_Chr1g0170931 | 46.552 | 116 | 53 | 2 | 26 | 134 | 6 | 119 | 1.63e-24 | 97.1 |
| Msa1007880 | MtrunA17_Chr8g0367421 | 40.000 | 110 | 49 | 1 | 161 | 270 | 2 | 94 | 1.18e-22 | 92.0 |
| Msa1007880 | MtrunA17_Chr8g0367461 | 39.823 | 113 | 66 | 2 | 256 | 367 | 1 | 112 | 7.42e-22 | 89.4 |
| Msa1007880 | MtrunA17_Chr4g0014601 | 28.750 | 240 | 150 | 9 | 41 | 272 | 33 | 259 | 2.06e-19 | 87.0 |
| Msa1007880 | MtrunA17_Chr7g0219171 | 37.391 | 115 | 66 | 3 | 237 | 347 | 117 | 229 | 3.37e-18 | 83.2 |
| Msa1007880 | MtrunA17_Chr8g0367391 | 41.441 | 111 | 61 | 4 | 259 | 367 | 26 | 134 | 1.38e-17 | 78.6 |
| Msa1007880 | MtrunA17_Chr8g0367471 | 47.297 | 74 | 39 | 0 | 184 | 257 | 1 | 74 | 2.11e-16 | 73.9 |
| Msa1007880 | MtrunA17_Chr1g0170951 | 41.429 | 70 | 41 | 0 | 278 | 347 | 17 | 86 | 3.13e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1007880 | AT5G54160.1 | 48.246 | 342 | 171 | 4 | 21 | 359 | 16 | 354 | 5.19e-110 | 326 |
| Msa1007880 | AT1G77520.1 | 39.024 | 369 | 209 | 10 | 12 | 367 | 16 | 381 | 6.78e-83 | 257 |
| Msa1007880 | AT1G51990.2 | 37.681 | 345 | 206 | 3 | 21 | 358 | 12 | 354 | 1.07e-81 | 254 |
| Msa1007880 | AT1G33030.1 | 41.040 | 346 | 193 | 8 | 28 | 367 | 10 | 350 | 2.99e-81 | 252 |
| Msa1007880 | AT1G51990.1 | 37.391 | 345 | 207 | 3 | 21 | 358 | 12 | 354 | 8.13e-81 | 251 |
| Msa1007880 | AT1G63140.4 | 39.295 | 397 | 205 | 15 | 1 | 367 | 11 | 401 | 5.06e-74 | 235 |
| Msa1007880 | AT1G21100.1 | 40.282 | 355 | 195 | 7 | 16 | 357 | 14 | 364 | 1.58e-73 | 233 |
| Msa1007880 | AT1G63140.2 | 40.331 | 362 | 195 | 12 | 21 | 367 | 26 | 381 | 2.11e-73 | 233 |
| Msa1007880 | AT1G21130.1 | 40.169 | 356 | 196 | 7 | 15 | 357 | 13 | 364 | 1.49e-72 | 230 |
| Msa1007880 | AT1G21110.1 | 40.000 | 355 | 196 | 7 | 16 | 357 | 14 | 364 | 2.20e-70 | 225 |
| Msa1007880 | AT1G21120.1 | 39.437 | 355 | 198 | 7 | 16 | 357 | 14 | 364 | 1.64e-69 | 223 |
| Msa1007880 | AT5G53810.1 | 38.304 | 342 | 197 | 7 | 38 | 367 | 39 | 378 | 4.85e-69 | 221 |
| Msa1007880 | AT1G21120.2 | 39.437 | 355 | 198 | 7 | 16 | 357 | 62 | 412 | 8.28e-69 | 222 |
| Msa1007880 | AT1G77530.1 | 38.310 | 355 | 204 | 9 | 25 | 367 | 30 | 381 | 3.09e-68 | 219 |
| Msa1007880 | AT1G76790.1 | 39.730 | 370 | 193 | 11 | 18 | 367 | 6 | 365 | 4.27e-67 | 216 |
| Msa1007880 | AT3G53140.1 | 35.328 | 351 | 200 | 9 | 13 | 347 | 1 | 340 | 6.86e-60 | 197 |
| Msa1007880 | AT1G62900.1 | 46.305 | 203 | 106 | 3 | 167 | 367 | 4 | 205 | 1.18e-57 | 186 |
| Msa1007880 | AT1G33030.3 | 40.400 | 250 | 140 | 6 | 28 | 272 | 10 | 255 | 2.05e-53 | 178 |
| Msa1007880 | AT1G33030.2 | 40.486 | 247 | 138 | 6 | 28 | 269 | 10 | 252 | 3.23e-52 | 174 |
| Msa1007880 | AT5G37170.1 | 34.375 | 320 | 167 | 9 | 57 | 367 | 49 | 334 | 1.09e-51 | 175 |
| Msa1007880 | AT5G37170.2 | 41.919 | 198 | 111 | 4 | 173 | 367 | 38 | 234 | 6.01e-50 | 167 |
| Msa1007880 | AT5G37170.3 | 42.246 | 187 | 104 | 4 | 184 | 367 | 1 | 186 | 3.78e-47 | 159 |
| Msa1007880 | AT1G21130.2 | 40.226 | 266 | 144 | 5 | 15 | 269 | 13 | 274 | 2.31e-45 | 157 |
| Msa1007880 | AT1G63140.1 | 37.710 | 297 | 152 | 12 | 1 | 269 | 11 | 302 | 1.73e-43 | 153 |
| Msa1007880 | AT4G35160.1 | 31.003 | 329 | 207 | 9 | 39 | 352 | 44 | 367 | 3.45e-37 | 138 |
| Msa1007880 | AT4G35150.1 | 32.787 | 244 | 146 | 6 | 126 | 352 | 68 | 310 | 1.09e-36 | 135 |
| Msa1007880 | AT1G77530.2 | 36.441 | 236 | 138 | 6 | 25 | 250 | 30 | 263 | 4.27e-33 | 124 |
| Msa1007880 | AT1G63140.3 | 36.029 | 272 | 141 | 12 | 1 | 244 | 11 | 277 | 1.64e-32 | 123 |
Find 66 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCTGCTTTCTCTATTAT+TGG | 0.128556 | 7_1:-7634850 | Msa1007880:CDS |
| TAAATATAGGATTAACTTTA+AGG | 0.132063 | 7_1:-7635745 | Msa1007880:intron |
| CTTGATGCATTTGTTGCTTC+TGG | 0.183069 | 7_1:+7634988 | None:intergenic |
| TCATTGATTTGTTGAATAAT+TGG | 0.195679 | 7_1:+7635634 | None:intergenic |
| CACAAAGCTTTGCCTCAAAA+TGG | 0.243448 | 7_1:-7635048 | Msa1007880:CDS |
| TGCAAAATATCCATCAATTA+AGG | 0.257882 | 7_1:-7635496 | Msa1007880:CDS |
| GAGAGTTTGGCTCAACGTTC+TGG | 0.290728 | 7_1:-7634895 | Msa1007880:CDS |
| CTCAACTTGTTTGAAATCAT+TGG | 0.292345 | 7_1:-7638704 | Msa1007880:CDS |
| GGTAGCATAGTGAGTGTTTA+TGG | 0.300569 | 7_1:-7638542 | Msa1007880:CDS |
| ATGTGTCATCCTGCTTTGAT+AGG | 0.301521 | 7_1:-7638443 | Msa1007880:CDS |
| AAGTTGATTGCCTTAATTGA+TGG | 0.303709 | 7_1:+7635486 | None:intergenic |
| AACTGCTGGAAACACTAAAT+TGG | 0.308710 | 7_1:+7638745 | None:intergenic |
| CATATCCTTTGTATATTTCA+AGG | 0.318611 | 7_1:+7635580 | None:intergenic |
| AACATACGATCGAGCCGATT+TGG | 0.322996 | 7_1:+7638620 | None:intergenic |
| TCTTGTGGCACATGTACTAT+TGG | 0.327244 | 7_1:-7635016 | Msa1007880:CDS |
| TGCAAAAGAATATGAGAGTT+TGG | 0.338232 | 7_1:-7634908 | Msa1007880:CDS |
| TAACCCAACCTTAAGCATTA+TGG | 0.341590 | 7_1:+7635253 | None:intergenic |
| TCTAGGCTGTATGTCATAAT+TGG | 0.348606 | 7_1:-7635107 | Msa1007880:intron |
| AATAGTGATCATGGTTATCT+TGG | 0.384090 | 7_1:-7638482 | Msa1007880:CDS |
| AACACTCTGATTTGCCAAAT+CGG | 0.390970 | 7_1:-7638634 | Msa1007880:CDS |
| GTTGATGTTGGAGGTGGAAA+TGG | 0.399088 | 7_1:-7635540 | Msa1007880:CDS |
| GTCTCAAGTTTGGTTGATGT+TGG | 0.402367 | 7_1:-7635552 | Msa1007880:CDS |
| TATCACTATCATCTATTTGT+GGG | 0.404350 | 7_1:+7638792 | None:intergenic |
| AAAGAACAATATACCTGGAA+TGG | 0.419990 | 7_1:+7635431 | None:intergenic |
| GTTTATGGGATCACACCTTC+TGG | 0.427376 | 7_1:-7638527 | Msa1007880:CDS |
| GAAAATGCACCACCCATTCC+AGG | 0.430355 | 7_1:-7635444 | Msa1007880:intron |
| TGAAATATACAAAGGATATG+AGG | 0.436772 | 7_1:-7635577 | Msa1007880:CDS |
| CACTATGCTACCATCATCAT+TGG | 0.442096 | 7_1:+7638553 | None:intergenic |
| CTCTTCTGTCTATTTCTACT+CGG | 0.445033 | 7_1:-7638577 | Msa1007880:CDS |
| AGGAGATGCCATAATGCTTA+AGG | 0.462667 | 7_1:-7635261 | Msa1007880:intron |
| GTAGCATAGTGAGTGTTTAT+GGG | 0.464079 | 7_1:-7638541 | Msa1007880:CDS |
| ATATGAGGGAGTCTCAAGTT+TGG | 0.471735 | 7_1:-7635562 | Msa1007880:CDS |
| ATTGCAGCATTAAGAACTGC+TGG | 0.480012 | 7_1:+7638731 | None:intergenic |
| GTATCACTATCATCTATTTG+TGG | 0.490917 | 7_1:+7638791 | None:intergenic |
| TAAGGATGCAGTACTTGATC+CGG | 0.492794 | 7_1:-7635727 | Msa1007880:CDS |
| GGCAAATCAGAGTGTTGAGT+TGG | 0.494514 | 7_1:+7638641 | None:intergenic |
| TATGATGAAAATAGTGATCA+TGG | 0.500039 | 7_1:-7638491 | Msa1007880:CDS |
| TTGAATAATTGGTTTACTTG+AGG | 0.500718 | 7_1:+7635645 | None:intergenic |
| AAGAACAATATACCTGGAAT+GGG | 0.505289 | 7_1:+7635432 | None:intergenic |
| TTTCTCTATTATTGGAGTGA+TGG | 0.505610 | 7_1:-7634842 | Msa1007880:CDS |
| AATATCTAAGTACGAGTACA+TGG | 0.507809 | 7_1:-7635676 | Msa1007880:CDS |
| TCAAGTTTGGTTGATGTTGG+AGG | 0.510442 | 7_1:-7635549 | Msa1007880:CDS |
| TGTGTCATCCTGCTTTGATA+GGG | 0.514622 | 7_1:-7638442 | Msa1007880:CDS |
| ACACTCTCAGCTATGGTACT+TGG | 0.515175 | 7_1:-7638770 | Msa1007880:CDS |
| TTGTTTGAAATCATTGGTGA+TGG | 0.517050 | 7_1:-7638698 | Msa1007880:CDS |
| ATCCTGCTTTGATAGGGTTG+TGG | 0.524365 | 7_1:-7638436 | Msa1007880:intron |
| ATCACTATCATCTATTTGTG+GGG | 0.530502 | 7_1:+7638793 | None:intergenic |
| CATTTAGGGATTGAGCATGT+TGG | 0.530865 | 7_1:-7635311 | Msa1007880:intron |
| ATCATGTTCATTAATGCTGG+TGG | 0.543605 | 7_1:-7634943 | Msa1007880:CDS |
| AGCATTATGGCATCTCCTTG+TGG | 0.554368 | 7_1:+7635266 | None:intergenic |
| AATATCATGTTCATTAATGC+TGG | 0.556116 | 7_1:-7634946 | Msa1007880:CDS |
| AGTTTGGTTGATGTTGGAGG+TGG | 0.559529 | 7_1:-7635546 | Msa1007880:CDS |
| GAAATATACAAAGGATATGA+GGG | 0.561483 | 7_1:-7635576 | Msa1007880:CDS |
| TTAGGGATTGAGCATGTTGG+AGG | 0.570708 | 7_1:-7635308 | Msa1007880:intron |
| TACCACAACCCTATCAAAGC+AGG | 0.575416 | 7_1:+7638434 | None:intergenic |
| AACAATATACCTGGAATGGG+TGG | 0.581952 | 7_1:+7635435 | None:intergenic |
| TCTACTCGGACCAATGATGA+TGG | 0.584557 | 7_1:-7638563 | Msa1007880:CDS |
| TAGTGATACACTCTCAGCTA+TGG | 0.591181 | 7_1:-7638777 | Msa1007880:CDS |
| AAATGGAAAGGTCATTCTTG+TGG | 0.596549 | 7_1:-7635031 | Msa1007880:CDS |
| TAAGTACGAGTACATGGGAA+AGG | 0.606162 | 7_1:-7635670 | Msa1007880:CDS |
| GGGTTTGAGATTCAATCACA+TGG | 0.609924 | 7_1:+7638813 | None:intergenic |
| AGCTTTGCCTCAAAATGGAA+AGG | 0.610192 | 7_1:-7635043 | Msa1007880:CDS |
| GGATGCAGTACTTGATCCGG+AGG | 0.613278 | 7_1:-7635724 | Msa1007880:CDS |
| AGAATCCTTGAAATATACAA+AGG | 0.621043 | 7_1:-7635585 | Msa1007880:CDS |
| ATATCTAAGTACGAGTACAT+GGG | 0.670164 | 7_1:-7635675 | Msa1007880:CDS |
| ATGTTTGAAAACATTCCACA+AGG | 0.693962 | 7_1:-7635281 | Msa1007880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTTTAATTATTAAGCA+AGG | + | chr7_1:7635272-7635291 | None:intergenic | 10.0% |
| !!! | AATGCTAAAATAATATTTTA+AGG | + | chr7_1:7636457-7636476 | None:intergenic | 10.0% |
| !!! | ATTTGTTAATTTATTTTAAG+AGG | - | chr7_1:7636559-7636578 | Msa1007880:intron | 10.0% |
| !! | ATAGAAACTATTAAATTTAA+AGG | - | chr7_1:7637223-7637242 | Msa1007880:intron | 10.0% |
| !! | TAAAAAAAAATACTTGATTA+TGG | - | chr7_1:7637746-7637765 | Msa1007880:intron | 10.0% |
| !! | AAAATTGTAAAATTTCATTT+AGG | - | chr7_1:7638344-7638363 | Msa1007880:intron | 10.0% |
| !! | AAATTGTAAAATTTCATTTA+GGG | - | chr7_1:7638345-7638364 | Msa1007880:intron | 10.0% |
| !!! | AAAATTTTCCATTTATATGT+AGG | - | chr7_1:7635284-7635303 | Msa1007880:CDS | 15.0% |
| !!! | TTTCTTTAAGAAAAACATAA+TGG | + | chr7_1:7635328-7635347 | None:intergenic | 15.0% |
| !! | TATAAAAAAATAAGTAGTCT+TGG | - | chr7_1:7637453-7637472 | Msa1007880:intron | 15.0% |
| !!! | TAATTAAATTTGTTGTTTGT+TGG | - | chr7_1:7637687-7637706 | Msa1007880:intron | 15.0% |
| !! | TATACAATAAATATACATTG+AGG | + | chr7_1:7637882-7637901 | None:intergenic | 15.0% |
| !! | ATCAGTTATATGATAAATAT+AGG | - | chr7_1:7637912-7637931 | Msa1007880:intron | 15.0% |
| !! | TAAATATAGGATTAACTTTA+AGG | - | chr7_1:7637925-7637944 | Msa1007880:intron | 15.0% |
| !! | GACTTATTCAAAAAAATTAA+TGG | - | chr7_1:7637971-7637990 | Msa1007880:intron | 15.0% |
| !! | AGTTTAAATAATTATTGAAG+TGG | + | chr7_1:7638305-7638324 | None:intergenic | 15.0% |
| !! | TAACAAAAATATTTACCAGA+AGG | + | chr7_1:7635161-7635180 | None:intergenic | 20.0% |
| !! | AATACATATAATGGCTTATT+TGG | - | chr7_1:7635407-7635426 | Msa1007880:intron | 20.0% |
| !! | ATACATATAATGGCTTATTT+GGG | - | chr7_1:7635408-7635427 | Msa1007880:intron | 20.0% |
| !! | AATTAGGATTTGTATTCTAT+CGG | + | chr7_1:7635594-7635613 | None:intergenic | 20.0% |
| !! | GTGAAATCACTTATTTAATT+AGG | - | chr7_1:7635953-7635972 | Msa1007880:intron | 20.0% |
| !! | ACTTATTTAATTAGGATAGA+AGG | - | chr7_1:7635961-7635980 | Msa1007880:intron | 20.0% |
| !! | AAGAAGAAGGAAAAAAAAAA+TGG | - | chr7_1:7636046-7636065 | Msa1007880:intron | 20.0% |
| !! | AGAAGAAGGAAAAAAAAAAT+GGG | - | chr7_1:7636047-7636066 | Msa1007880:intron | 20.0% |
| !! | TTCTTTACAAGAATATAGTT+TGG | - | chr7_1:7636477-7636496 | Msa1007880:intron | 20.0% |
| !! | CTAATTCAATATGAATTACA+AGG | + | chr7_1:7636679-7636698 | None:intergenic | 20.0% |
| !! | AATAGTGAGAGTTATTTATA+GGG | - | chr7_1:7636724-7636743 | Msa1007880:intron | 20.0% |
| !! | AACTATTAAATTTAAAGGCA+CGG | - | chr7_1:7637228-7637247 | Msa1007880:intron | 20.0% |
| !! | AGTTAATTATATCTTAATCG+TGG | + | chr7_1:7637807-7637826 | None:intergenic | 20.0% |
| !!! | TCATTGATTTGTTGAATAAT+TGG | + | chr7_1:7638039-7638058 | None:intergenic | 20.0% |
| !!! | ATTTTAAAGAACAATATACC+TGG | + | chr7_1:7638247-7638266 | None:intergenic | 20.0% |
| !!! | AGGTATATTGTTCTTTAAAA+TGG | - | chr7_1:7638246-7638265 | Msa1007880:intron | 20.0% |
| ! | TATCACTATCATCTATTTGT+GGG | + | chr7_1:7634881-7634900 | None:intergenic | 25.0% |
| ! | TATGATGAAAATAGTGATCA+TGG | - | chr7_1:7635179-7635198 | Msa1007880:intron | 25.0% |
| ! | TAGTCATTCCTACATATAAA+TGG | + | chr7_1:7635295-7635314 | None:intergenic | 25.0% |
| ! | TTTATATGTAGGAATGACTA+CGG | - | chr7_1:7635295-7635314 | Msa1007880:CDS | 25.0% |
| !!! | AACAACTTTTTGAAAAACAC+TGG | - | chr7_1:7635372-7635391 | Msa1007880:intron | 25.0% |
| !!! | GAAATCGCTTTTATTTTTTG+TGG | - | chr7_1:7635436-7635455 | Msa1007880:intron | 25.0% |
| !!! | CTTTTTGTTTTTAGCGAATT+AGG | + | chr7_1:7635610-7635629 | None:intergenic | 25.0% |
| ! | CTAATTCGCTAAAAACAAAA+AGG | - | chr7_1:7635608-7635627 | Msa1007880:CDS | 25.0% |
| !!! | GCTGTTTTATGTTATTAACA+TGG | + | chr7_1:7635661-7635680 | None:intergenic | 25.0% |
| ! | GTCATATTAGTCATATTTGT+AGG | + | chr7_1:7635696-7635715 | None:intergenic | 25.0% |
| ! | AGTATATGTAGATTGATCAT+GGG | - | chr7_1:7636118-7636137 | Msa1007880:intron | 25.0% |
| !! | CATATTTCTTTTCGACTTTA+AGG | + | chr7_1:7636220-7636239 | None:intergenic | 25.0% |
| !!! | ATCATTATTTTGACAAGTCT+TGG | + | chr7_1:7636385-7636404 | None:intergenic | 25.0% |
| ! | AAGAAACTATCACAAAAGAT+AGG | - | chr7_1:7636588-7636607 | Msa1007880:intron | 25.0% |
| ! | CAATAGTGAGAGTTATTTAT+AGG | - | chr7_1:7636723-7636742 | Msa1007880:intron | 25.0% |
| ! | GAAACAAACATGAAACTTAA+AGG | + | chr7_1:7636829-7636848 | None:intergenic | 25.0% |
| !!! | AAGTTTCTAAAGTTTCAGAT+AGG | - | chr7_1:7636862-7636881 | Msa1007880:intron | 25.0% |
| !!! | TTTAAGTTTCGAGTTTGTTT+CGG | - | chr7_1:7636888-7636907 | Msa1007880:intron | 25.0% |
| !! | ATAGATCAACTTTAGCTTAA+CGG | + | chr7_1:7636995-7637014 | None:intergenic | 25.0% |
| !!! | TTTAAGTTTCGAGTTTGTTT+CGG | + | chr7_1:7636888-7636907 | None:intergenic | 25.0% |
| !! | ATAGGTTCTTTAAGTTTCTA+AGG | + | chr7_1:7637118-7637137 | None:intergenic | 25.0% |
| ! | TAAAGGCCAAATACATATTT+GGG | + | chr7_1:7637167-7637186 | None:intergenic | 25.0% |
| !!! | TTTTTTGTGAAATTTTCCGA+TGG | - | chr7_1:7637521-7637540 | Msa1007880:intron | 25.0% |
| !!! | GTTTCGTTTCTTTTTTTTTG+TGG | - | chr7_1:7637551-7637570 | Msa1007880:intron | 25.0% |
| !! | TTGAATAATTGGTTTACTTG+AGG | + | chr7_1:7638028-7638047 | None:intergenic | 25.0% |
| !! | GATTCTTTTCATGTGAATTT+TGG | + | chr7_1:7638071-7638090 | None:intergenic | 25.0% |
| ! | AGAATCCTTGAAATATACAA+AGG | - | chr7_1:7638085-7638104 | Msa1007880:intron | 25.0% |
| ! | CATATCCTTTGTATATTTCA+AGG | + | chr7_1:7638093-7638112 | None:intergenic | 25.0% |
| ! | TGAAATATACAAAGGATATG+AGG | - | chr7_1:7638093-7638112 | Msa1007880:intron | 25.0% |
| ! | GAAATATACAAAGGATATGA+GGG | - | chr7_1:7638094-7638113 | Msa1007880:intron | 25.0% |
| ! | TGCAAAATATCCATCAATTA+AGG | - | chr7_1:7638174-7638193 | Msa1007880:intron | 25.0% |
| ! | AATATCATGTTCATTAATGC+TGG | - | chr7_1:7638724-7638743 | Msa1007880:CDS | 25.0% |
| ! | GTTTTCTTTCTCATTGGAAT+AGG | + | chr7_1:7634838-7634857 | None:intergenic | 30.0% |
| ATCACTATCATCTATTTGTG+GGG | + | chr7_1:7634880-7634899 | None:intergenic | 30.0% | |
| GTATCACTATCATCTATTTG+TGG | + | chr7_1:7634882-7634901 | None:intergenic | 30.0% | |
| ! | CTCAACTTGTTTGAAATCAT+TGG | - | chr7_1:7634966-7634985 | Msa1007880:CDS | 30.0% |
| ! | TTGTTTGAAATCATTGGTGA+TGG | - | chr7_1:7634972-7634991 | Msa1007880:CDS | 30.0% |
| AATAGTGATCATGGTTATCT+TGG | - | chr7_1:7635188-7635207 | Msa1007880:intron | 30.0% | |
| !!! | TTTATTTTTTGTGGTGTCCA+AGG | - | chr7_1:7635445-7635464 | Msa1007880:CDS | 30.0% |
| CATAATATATGCAATGTCCA+GGG | + | chr7_1:7635477-7635496 | None:intergenic | 30.0% | |
| TATGACTATATTCAAGTCTC+CGG | - | chr7_1:7635710-7635729 | Msa1007880:CDS | 30.0% | |
| GAGTATATGTAGATTGATCA+TGG | - | chr7_1:7636117-7636136 | Msa1007880:intron | 30.0% | |
| GTATATGTAGATTGATCATG+GGG | - | chr7_1:7636119-7636138 | Msa1007880:intron | 30.0% | |
| ATGAAGTTCATATGAGAAGT+AGG | - | chr7_1:7636626-7636645 | Msa1007880:intron | 30.0% | |
| ! | GTAAACTATGGTTAGTTGTT+TGG | + | chr7_1:7636782-7636801 | None:intergenic | 30.0% |
| ATTTGGTCAGATGTAAACTA+TGG | + | chr7_1:7636794-7636813 | None:intergenic | 30.0% | |
| GAAACAAACTCGAAACTTAA+AGG | + | chr7_1:7637080-7637099 | None:intergenic | 30.0% | |
| !! | AAGTTTCTAAGGTTTCAGAT+AGG | + | chr7_1:7637047-7637066 | None:intergenic | 30.0% |
| CTGAAACCTTAGAAACTTAA+AGG | - | chr7_1:7637049-7637068 | Msa1007880:intron | 30.0% | |
| ! | ATAGGTCCTTTAAGTTTCTA+AGG | + | chr7_1:7637058-7637077 | None:intergenic | 30.0% |
| GAAACAAACTCGAAACTTAA+AGG | - | chr7_1:7637080-7637099 | Msa1007880:intron | 30.0% | |
| !! | AAGTTTCTAAGGTTTCAGAT+AGG | + | chr7_1:7637047-7637066 | None:intergenic | 30.0% |
| GAAACAAACGTGAAACTTAA+AGG | - | chr7_1:7637140-7637159 | Msa1007880:intron | 30.0% | |
| AAAGGACCCAAATATGTATT+TGG | - | chr7_1:7637158-7637177 | Msa1007880:intron | 30.0% | |
| GTAAAGGCCAAATACATATT+TGG | + | chr7_1:7637168-7637187 | None:intergenic | 30.0% | |
| CATAGTTAGTTCAGATGTAA+AGG | + | chr7_1:7637184-7637203 | None:intergenic | 30.0% | |
| TTCTTGATGTAGTTCCAAAT+TGG | - | chr7_1:7637381-7637400 | Msa1007880:intron | 30.0% | |
| CAATACCAAGTCAAAATTCT+TGG | - | chr7_1:7637425-7637444 | Msa1007880:intron | 30.0% | |
| ! | AAAAAGTCTTTATGATGACG+CGG | + | chr7_1:7637506-7637525 | None:intergenic | 30.0% |
| !!! | TCGTTTCTTTTTTTTTGTGG+TGG | - | chr7_1:7637554-7637573 | Msa1007880:intron | 30.0% |
| !! | TTGTTGTTTGTTGGAAATCA+AGG | - | chr7_1:7637696-7637715 | Msa1007880:intron | 30.0% |
| TTGGAAATCAAGGATGATAA+TGG | - | chr7_1:7637706-7637725 | Msa1007880:intron | 30.0% | |
| ! | TTTTTGAATAAGTCAACCTC+CGG | + | chr7_1:7637965-7637984 | None:intergenic | 30.0% |
| AATATCTAAGTACGAGTACA+TGG | - | chr7_1:7637994-7638013 | Msa1007880:intron | 30.0% | |
| ATATCTAAGTACGAGTACAT+GGG | - | chr7_1:7637995-7638014 | Msa1007880:intron | 30.0% | |
| ! | AAGTTGATTGCCTTAATTGA+TGG | + | chr7_1:7638187-7638206 | None:intergenic | 30.0% |
| AAGAACAATATACCTGGAAT+GGG | + | chr7_1:7638241-7638260 | None:intergenic | 30.0% | |
| AAAGAACAATATACCTGGAA+TGG | + | chr7_1:7638242-7638261 | None:intergenic | 30.0% | |
| ATGTTTGAAAACATTCCACA+AGG | - | chr7_1:7638389-7638408 | Msa1007880:intron | 30.0% | |
| !!! | TCCATCTTTTTCAATGTTCT+AGG | - | chr7_1:7638546-7638565 | Msa1007880:CDS | 30.0% |
| TGCAAAAGAATATGAGAGTT+TGG | - | chr7_1:7638762-7638781 | Msa1007880:CDS | 30.0% | |
| TGTTCTGCTTTCTCTATTAT+TGG | - | chr7_1:7638820-7638839 | Msa1007880:CDS | 30.0% | |
| TTTCTCTATTATTGGAGTGA+TGG | - | chr7_1:7638828-7638847 | Msa1007880:CDS | 30.0% | |
| ! | CACATGGTTTTCTTTCTCAT+TGG | + | chr7_1:7634844-7634863 | None:intergenic | 35.0% |
| AACTGCTGGAAACACTAAAT+TGG | + | chr7_1:7634928-7634947 | None:intergenic | 35.0% | |
| ! | AACACTCTGATTTGCCAAAT+CGG | - | chr7_1:7635036-7635055 | Msa1007880:CDS | 35.0% |
| !! | CTCTTCTGTCTATTTCTACT+CGG | - | chr7_1:7635093-7635112 | Msa1007880:CDS | 35.0% |
| GTAGCATAGTGAGTGTTTAT+GGG | - | chr7_1:7635129-7635148 | Msa1007880:intron | 35.0% | |
| GCATAATATATGCAATGTCC+AGG | + | chr7_1:7635478-7635497 | None:intergenic | 35.0% | |
| CCAAAGTCATTGTCATTGAT+CGG | - | chr7_1:7635769-7635788 | Msa1007880:intron | 35.0% | |
| AAATAAACACCGCACTAAGA+CGG | - | chr7_1:7635830-7635849 | Msa1007880:intron | 35.0% | |
| !! | TTTTATTTCCCGTCTTAGTG+CGG | + | chr7_1:7635842-7635861 | None:intergenic | 35.0% |
| GGATAGAAGGAAAAACAACT+CGG | - | chr7_1:7635974-7635993 | Msa1007880:intron | 35.0% | |
| AAAAAAAATGGGTGACAGCT+AGG | - | chr7_1:7636058-7636077 | Msa1007880:intron | 35.0% | |
| AAAAAAATGGGTGACAGCTA+GGG | - | chr7_1:7636059-7636078 | Msa1007880:intron | 35.0% | |
| ! | CATTCCCATTGTTTGGAATT+CGG | - | chr7_1:7636519-7636538 | Msa1007880:intron | 35.0% |
| ! | CTATGGTTAGTTGTTTGGTT+AGG | + | chr7_1:7636777-7636796 | None:intergenic | 35.0% |
| ACATGAAACTTAAAGGACCT+GGG | + | chr7_1:7636822-7636841 | None:intergenic | 35.0% | |
| AACATGAAACTTAAAGGACC+TGG | + | chr7_1:7636823-7636842 | None:intergenic | 35.0% | |
| ATAGGTCCTTTAAGTGTCTA+AGG | - | chr7_1:7636911-7636930 | Msa1007880:intron | 35.0% | |
| CTGAAACCTTAGACACTTAA+AGG | + | chr7_1:7636920-7636939 | None:intergenic | 35.0% | |
| ! | AAGTGTCTAAGGTTTCAGAT+AGG | - | chr7_1:7636922-7636941 | Msa1007880:intron | 35.0% |
| ! | GTGTCAAGTTTGTTTCAGAT+AGG | - | chr7_1:7636953-7636972 | Msa1007880:intron | 35.0% |
| !! | AAGTTTCGAGTTTGGCTTAA+CGG | + | chr7_1:7637018-7637037 | None:intergenic | 35.0% |
| AAGCCAAACTCGAAACTTAA+AGG | - | chr7_1:7637020-7637039 | Msa1007880:intron | 35.0% | |
| GTTTCACGTTTGTTTCAGAT+AGG | + | chr7_1:7637136-7637155 | None:intergenic | 35.0% | |
| TATTCTTGTACTCTTGTGGT+AGG | + | chr7_1:7637260-7637279 | None:intergenic | 35.0% | |
| GATGTATTCTTGTACTCTTG+TGG | + | chr7_1:7637264-7637283 | None:intergenic | 35.0% | |
| TTTGGTCCACTTGTCAAATT+GGG | + | chr7_1:7637342-7637361 | None:intergenic | 35.0% | |
| ATTTGGTCCACTTGTCAAAT+TGG | + | chr7_1:7637343-7637362 | None:intergenic | 35.0% | |
| TGATGTAGTTCCAAATTGGA+CGG | - | chr7_1:7637385-7637404 | Msa1007880:intron | 35.0% | |
| !!! | ACGTTCCAAGAATTTTGACT+TGG | + | chr7_1:7637433-7637452 | None:intergenic | 35.0% |
| AAACGAAACATGTATGCCAT+CGG | + | chr7_1:7637540-7637559 | None:intergenic | 35.0% | |
| !!! | TTCTTTTTTTTTGTGGTGGC+CGG | - | chr7_1:7637558-7637577 | Msa1007880:intron | 35.0% |
| AGAAACGAAACATGTATGTC+CGG | + | chr7_1:7637594-7637613 | None:intergenic | 35.0% | |
| ! | CATTTTCAATCACTTGAGGA+AGG | + | chr7_1:7638213-7638232 | None:intergenic | 35.0% |
| ATGCCATAATGCTTAAGGTT+GGG | - | chr7_1:7638414-7638433 | Msa1007880:intron | 35.0% | |
| TAACCCAACCTTAAGCATTA+TGG | + | chr7_1:7638420-7638439 | None:intergenic | 35.0% | |
| GCCTAGAACATTGAAAAAGA+TGG | + | chr7_1:7638550-7638569 | None:intergenic | 35.0% | |
| TCTAGGCTGTATGTCATAAT+TGG | - | chr7_1:7638563-7638582 | Msa1007880:CDS | 35.0% | |
| ! | AGAATGACCTTTCCATTTTG+AGG | + | chr7_1:7638637-7638656 | None:intergenic | 35.0% |
| AAATGGAAAGGTCATTCTTG+TGG | - | chr7_1:7638639-7638658 | Msa1007880:CDS | 35.0% | |
| ATCATGTTCATTAATGCTGG+TGG | - | chr7_1:7638727-7638746 | Msa1007880:CDS | 35.0% | |
| ! | GGGTTTGAGATTCAATCACA+TGG | + | chr7_1:7634860-7634879 | None:intergenic | 40.0% |
| TAGTGATACACTCTCAGCTA+TGG | - | chr7_1:7634893-7634912 | Msa1007880:CDS | 40.0% | |
| ATTGCAGCATTAAGAACTGC+TGG | + | chr7_1:7634942-7634961 | None:intergenic | 40.0% | |
| CACTATGCTACCATCATCAT+TGG | + | chr7_1:7635120-7635139 | None:intergenic | 40.0% | |
| GGTAGCATAGTGAGTGTTTA+TGG | - | chr7_1:7635128-7635147 | Msa1007880:intron | 40.0% | |
| ATGTGTCATCCTGCTTTGAT+AGG | - | chr7_1:7635227-7635246 | Msa1007880:intron | 40.0% | |
| TGTGTCATCCTGCTTTGATA+GGG | - | chr7_1:7635228-7635247 | Msa1007880:intron | 40.0% | |
| ATGTAGGAATGACTACGGTT+CGG | - | chr7_1:7635300-7635319 | Msa1007880:CDS | 40.0% | |
| TACCAACTGAGTTAAGATCG+TGG | - | chr7_1:7635506-7635525 | Msa1007880:CDS | 40.0% | |
| ACCAACTGAGTTAAGATCGT+GGG | - | chr7_1:7635507-7635526 | Msa1007880:CDS | 40.0% | |
| CCGATCAATGACAATGACTT+TGG | + | chr7_1:7635772-7635791 | None:intergenic | 40.0% | |
| GTGCGGTGTTTATTTGATTC+AGG | + | chr7_1:7635825-7635844 | None:intergenic | 40.0% | |
| AATAAACACCGCACTAAGAC+GGG | - | chr7_1:7635831-7635850 | Msa1007880:intron | 40.0% | |
| TAGAAGGAAAAACAACTCGG+AGG | - | chr7_1:7635977-7635996 | Msa1007880:intron | 40.0% | |
| AGAAGGAAAAACAACTCGGA+GGG | - | chr7_1:7635978-7635997 | Msa1007880:intron | 40.0% | |
| TCCTTCTTCTTCTTGTCAGA+GGG | + | chr7_1:7636037-7636056 | None:intergenic | 40.0% | |
| TTCCTTCTTCTTCTTGTCAG+AGG | + | chr7_1:7636038-7636057 | None:intergenic | 40.0% | |
| AGAGAAGAGAGATAGGAAGA+AGG | - | chr7_1:7636092-7636111 | Msa1007880:intron | 40.0% | |
| GAGAAGAGAGATAGGAAGAA+GGG | - | chr7_1:7636093-7636112 | Msa1007880:intron | 40.0% | |
| AGAAGAGAGATAGGAAGAAG+GGG | - | chr7_1:7636094-7636113 | Msa1007880:intron | 40.0% | |
| !! | AACTTGTGTCACTTGTGTCA+AGG | - | chr7_1:7636351-7636370 | Msa1007880:intron | 40.0% |
| CCAAACAATGGGAATGTGAT+AGG | + | chr7_1:7636515-7636534 | None:intergenic | 40.0% | |
| CCTATCACATTCCCATTGTT+TGG | - | chr7_1:7636512-7636531 | Msa1007880:intron | 40.0% | |
| ATATGAGAAGTAGGCATGAG+AGG | - | chr7_1:7636635-7636654 | Msa1007880:intron | 40.0% | |
| CATGAAACTTAAAGGACCTG+GGG | + | chr7_1:7636821-7636840 | None:intergenic | 40.0% | |
| !! | GTTTCGAGTTTGTTTCGGAT+AGG | - | chr7_1:7636893-7636912 | Msa1007880:intron | 40.0% |
| !! | CTTAACGGAGGTTGATAGAA+AGG | + | chr7_1:7636980-7636999 | None:intergenic | 40.0% |
| ! | GATCAACTTTAGCTTAACGG+AGG | + | chr7_1:7636992-7637011 | None:intergenic | 40.0% |
| !! | GGTCCTTTAAGTTTCGAGTT+TGG | + | chr7_1:7636883-7636902 | None:intergenic | 40.0% |
| !! | GTTTCGAGTTTGTTTCGGAT+AGG | + | chr7_1:7636893-7636912 | None:intergenic | 40.0% |
| TTGGTCCACTTGTCAAATTG+GGG | + | chr7_1:7637341-7637360 | None:intergenic | 40.0% | |
| ATCTTTGTTGCCGTCCAATT+TGG | + | chr7_1:7637398-7637417 | None:intergenic | 40.0% | |
| !!! | TCTTTTTTTTTGTGGTGGCC+GGG | - | chr7_1:7637559-7637578 | Msa1007880:intron | 40.0% |
| AAACGAAACATGTATGTCCG+GGG | + | chr7_1:7637592-7637611 | None:intergenic | 40.0% | |
| GAAACGAAACATGTATGTCC+GGG | + | chr7_1:7637593-7637612 | None:intergenic | 40.0% | |
| TAAGGATGCAGTACTTGATC+CGG | - | chr7_1:7637943-7637962 | Msa1007880:intron | 40.0% | |
| TAAGTACGAGTACATGGGAA+AGG | - | chr7_1:7638000-7638019 | Msa1007880:intron | 40.0% | |
| ATATGAGGGAGTCTCAAGTT+TGG | - | chr7_1:7638108-7638127 | Msa1007880:intron | 40.0% | |
| ! | GTCTCAAGTTTGGTTGATGT+TGG | - | chr7_1:7638118-7638137 | Msa1007880:intron | 40.0% |
| ! | TCAAGTTTGGTTGATGTTGG+AGG | - | chr7_1:7638121-7638140 | Msa1007880:intron | 40.0% |
| ! | GGTGCATTTTCAATCACTTG+AGG | + | chr7_1:7638217-7638236 | None:intergenic | 40.0% |
| AACAATATACCTGGAATGGG+TGG | + | chr7_1:7638238-7638257 | None:intergenic | 40.0% | |
| CATTTAGGGATTGAGCATGT+TGG | - | chr7_1:7638359-7638378 | Msa1007880:intron | 40.0% | |
| AGGAGATGCCATAATGCTTA+AGG | - | chr7_1:7638409-7638428 | Msa1007880:intron | 40.0% | |
| GATGCCATAATGCTTAAGGT+TGG | - | chr7_1:7638413-7638432 | Msa1007880:intron | 40.0% | |
| CACAAAGCTTTGCCTCAAAA+TGG | - | chr7_1:7638622-7638641 | Msa1007880:CDS | 40.0% | |
| AGCTTTGCCTCAAAATGGAA+AGG | - | chr7_1:7638627-7638646 | Msa1007880:CDS | 40.0% | |
| TCTTGTGGCACATGTACTAT+TGG | - | chr7_1:7638654-7638673 | Msa1007880:CDS | 40.0% | |
| ! | CTTGATGCATTTGTTGCTTC+TGG | + | chr7_1:7638685-7638704 | None:intergenic | 40.0% |
| ACACTCTCAGCTATGGTACT+TGG | - | chr7_1:7634900-7634919 | Msa1007880:CDS | 45.0% | |
| !! | GGCAAATCAGAGTGTTGAGT+TGG | + | chr7_1:7635032-7635051 | None:intergenic | 45.0% |
| AACATACGATCGAGCCGATT+TGG | + | chr7_1:7635053-7635072 | None:intergenic | 45.0% | |
| TCTACTCGGACCAATGATGA+TGG | - | chr7_1:7635107-7635126 | Msa1007880:intron | 45.0% | |
| GTTTATGGGATCACACCTTC+TGG | - | chr7_1:7635143-7635162 | Msa1007880:intron | 45.0% | |
| ATCCTGCTTTGATAGGGTTG+TGG | - | chr7_1:7635234-7635253 | Msa1007880:intron | 45.0% | |
| TACCACAACCCTATCAAAGC+AGG | + | chr7_1:7635239-7635258 | None:intergenic | 45.0% | |
| ! | AATGTCCAGGGTTCTAACCT+TGG | + | chr7_1:7635465-7635484 | None:intergenic | 45.0% |
| TCCCACGATCTTAACTCAGT+TGG | + | chr7_1:7635511-7635530 | None:intergenic | 45.0% | |
| TGTCGTCAACGTTGTAGATC+CGG | + | chr7_1:7635749-7635768 | None:intergenic | 45.0% | |
| GAAGGAAAAACAACTCGGAG+GGG | - | chr7_1:7635979-7635998 | Msa1007880:intron | 45.0% | |
| ! | AACTCGGAGGGGTGATTTTT+GGG | - | chr7_1:7635990-7636009 | Msa1007880:intron | 45.0% |
| CCTTCTTCTTCTTGTCAGAG+GGG | + | chr7_1:7636036-7636055 | None:intergenic | 45.0% | |
| GAGAAGGAGAGAAGAGAGAT+AGG | - | chr7_1:7636085-7636104 | Msa1007880:intron | 45.0% | |
| GAAGAGAGATAGGAAGAAGG+GGG | - | chr7_1:7636095-7636114 | Msa1007880:intron | 45.0% | |
| ! | AGCGCCGAATTCCAAACAAT+GGG | + | chr7_1:7636526-7636545 | None:intergenic | 45.0% |
| ! | TAGCGCCGAATTCCAAACAA+TGG | + | chr7_1:7636527-7636546 | None:intergenic | 45.0% |
| GGCATGAGAGGTTGAAACAA+AGG | - | chr7_1:7636647-7636666 | Msa1007880:intron | 45.0% | |
| TCCTACCCCAATTTGACAAG+TGG | - | chr7_1:7637333-7637352 | Msa1007880:intron | 45.0% | |
| TCCACTTGTCAAATTGGGGT+AGG | + | chr7_1:7637337-7637356 | None:intergenic | 45.0% | |
| !!! | CTTTTTTTTTGTGGTGGCCG+GGG | - | chr7_1:7637560-7637579 | Msa1007880:intron | 45.0% |
| ! | AGTTTGGTTGATGTTGGAGG+TGG | - | chr7_1:7638124-7638143 | Msa1007880:intron | 45.0% |
| GTTGATGTTGGAGGTGGAAA+TGG | - | chr7_1:7638130-7638149 | Msa1007880:intron | 45.0% | |
| TTAGGGATTGAGCATGTTGG+AGG | - | chr7_1:7638362-7638381 | Msa1007880:intron | 45.0% | |
| AGCATTATGGCATCTCCTTG+TGG | + | chr7_1:7638407-7638426 | None:intergenic | 45.0% | |
| !! | AAATATTAAAATACATATAA+TGG | - | chr7_1:7635398-7635417 | Msa1007880:intron | 5.0% |
| !!! | TAATTTTCTAATAAATAATT+TGG | + | chr7_1:7637360-7637379 | None:intergenic | 5.0% |
| !!! | AAAGTATTTTTTTTTTAAAT+TGG | - | chr7_1:7637778-7637797 | Msa1007880:intron | 5.0% |
| !!! | AAGTATTTTTTTTTTAAATT+GGG | - | chr7_1:7637779-7637798 | Msa1007880:intron | 5.0% |
| ATCCGGAGACACGAGTATTC+CGG | + | chr7_1:7635732-7635751 | None:intergenic | 50.0% | |
| ! | CAACTCGGAGGGGTGATTTT+TGG | - | chr7_1:7635989-7636008 | Msa1007880:intron | 50.0% |
| CCCCTCTGACAAGAAGAAGA+AGG | - | chr7_1:7636033-7636052 | Msa1007880:intron | 50.0% | |
| GTGACAGCTAGGGTTTGAGA+AGG | - | chr7_1:7636069-7636088 | Msa1007880:intron | 50.0% | |
| ATCTGACCAAATACCTCCCC+AGG | - | chr7_1:7636802-7636821 | Msa1007880:intron | 50.0% | |
| !! | AAAGGACCTGGGGAGGTATT+TGG | + | chr7_1:7636811-7636830 | None:intergenic | 50.0% |
| GAAACTTAAAGGACCTGGGG+AGG | + | chr7_1:7636818-7636837 | None:intergenic | 50.0% | |
| GAAAATGCACCACCCATTCC+AGG | - | chr7_1:7638226-7638245 | Msa1007880:intron | 50.0% | |
| ! | GAGAGTTTGGCTCAACGTTC+TGG | - | chr7_1:7638775-7638794 | Msa1007880:CDS | 50.0% |
| GGTGTCCAAGGTTAGAACCC+TGG | - | chr7_1:7635457-7635476 | Msa1007880:CDS | 55.0% | |
| CTCCGGAATACTCGTGTCTC+CGG | - | chr7_1:7635727-7635746 | Msa1007880:CDS | 55.0% | |
| TATGTCCGGGGTTCAAACCC+CGG | + | chr7_1:7637580-7637599 | None:intergenic | 55.0% | |
| GGATGCAGTACTTGATCCGG+AGG | - | chr7_1:7637946-7637965 | Msa1007880:intron | 55.0% | |
| GGTGGCCGGGGTTTGAACCC+CGG | - | chr7_1:7637572-7637591 | Msa1007880:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 7634828 | 7638864 | 7634828 | ID=Msa1007880;Name=Msa1007880 |
| chr7_1 | mRNA | 7634828 | 7638864 | 7634828 | ID=Msa1007880-mRNA-1;Parent=Msa1007880;Name=Msa1007880-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|1|1|4|0|367 |
| chr7_1 | exon | 7638437 | 7638864 | 7638437 | ID=Msa1007880-mRNA-1:exon:2316;Parent=Msa1007880-mRNA-1 |
| chr7_1 | exon | 7635445 | 7635758 | 7635445 | ID=Msa1007880-mRNA-1:exon:2315;Parent=Msa1007880-mRNA-1 |
| chr7_1 | exon | 7635262 | 7635326 | 7635262 | ID=Msa1007880-mRNA-1:exon:2314;Parent=Msa1007880-mRNA-1 |
| chr7_1 | exon | 7634828 | 7635124 | 7634828 | ID=Msa1007880-mRNA-1:exon:2313;Parent=Msa1007880-mRNA-1 |
| chr7_1 | CDS | 7638437 | 7638864 | 7638437 | ID=Msa1007880-mRNA-1:cds;Parent=Msa1007880-mRNA-1 |
| chr7_1 | CDS | 7635445 | 7635758 | 7635445 | ID=Msa1007880-mRNA-1:cds;Parent=Msa1007880-mRNA-1 |
| chr7_1 | CDS | 7635262 | 7635326 | 7635262 | ID=Msa1007880-mRNA-1:cds;Parent=Msa1007880-mRNA-1 |
| chr7_1 | CDS | 7634828 | 7635124 | 7634828 | ID=Msa1007880-mRNA-1:cds;Parent=Msa1007880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
