Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1008940 | O22308.1 | 98.011 | 352 | 7 | 0 | 1 | 352 | 1 | 352 | 0.0 | 713 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1008940 | sp|O22308|7OMT6_MEDSA | 98.011 | 352 | 7 | 0 | 1 | 352 | 1 | 352 | 0.0 | 713 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1008940 | Q1EDY7 | 97.443 | 352 | 9 | 0 | 1 | 352 | 1 | 352 | 0.0 | 709 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1008940 | Msa1138910 | 0.804654 | 1.947632e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1008940 | MtrunA17_Chr7g0219141 | 80.952 | 357 | 63 | 1 | 1 | 352 | 1 | 357 | 0.0 | 620 |
| Msa1008940 | MtrunA17_Chr7g0219161 | 77.681 | 345 | 72 | 1 | 1 | 340 | 1 | 345 | 0.0 | 574 |
| Msa1008940 | MtrunA17_Chr1g0188391 | 58.726 | 361 | 140 | 3 | 1 | 352 | 1 | 361 | 1.33e-153 | 436 |
| Msa1008940 | MtrunA17_Chr7g0223231 | 55.429 | 350 | 149 | 3 | 4 | 350 | 3 | 348 | 3.21e-138 | 396 |
| Msa1008940 | MtrunA17_Chr4g0046531 | 56.742 | 356 | 150 | 3 | 1 | 352 | 363 | 718 | 3.25e-137 | 407 |
| Msa1008940 | MtrunA17_Chr4g0046531 | 56.901 | 355 | 149 | 3 | 1 | 351 | 1 | 355 | 9.76e-136 | 403 |
| Msa1008940 | MtrunA17_Chr7g0223241 | 53.143 | 350 | 157 | 3 | 4 | 350 | 3 | 348 | 3.09e-133 | 384 |
| Msa1008940 | MtrunA17_Chr1g0188371 | 54.412 | 340 | 147 | 4 | 1 | 332 | 1 | 340 | 2.82e-127 | 370 |
| Msa1008940 | MtrunA17_Chr4g0014561 | 51.791 | 363 | 164 | 4 | 1 | 352 | 1 | 363 | 2.89e-124 | 361 |
| Msa1008940 | MtrunA17_Chr4g0014681 | 51.791 | 363 | 164 | 4 | 1 | 352 | 1 | 363 | 8.88e-124 | 360 |
| Msa1008940 | MtrunA17_Chr4g0046361 | 47.922 | 361 | 179 | 4 | 1 | 352 | 1 | 361 | 1.49e-119 | 349 |
| Msa1008940 | MtrunA17_Chr4g0014641 | 50.964 | 363 | 167 | 4 | 1 | 352 | 1 | 363 | 8.93e-119 | 347 |
| Msa1008940 | MtrunA17_Chr4g0046341 | 49.451 | 364 | 172 | 5 | 1 | 352 | 1 | 364 | 1.11e-115 | 340 |
| Msa1008940 | MtrunA17_Chr5g0432251 | 47.278 | 349 | 177 | 5 | 11 | 352 | 11 | 359 | 8.21e-115 | 337 |
| Msa1008940 | MtrunA17_Chr4g0040621 | 46.243 | 346 | 182 | 4 | 11 | 352 | 24 | 369 | 1.38e-113 | 334 |
| Msa1008940 | MtrunA17_Chr5g0432241 | 47.278 | 349 | 177 | 4 | 11 | 352 | 12 | 360 | 1.39e-113 | 334 |
| Msa1008940 | MtrunA17_Chr5g0432301 | 47.126 | 348 | 177 | 5 | 11 | 351 | 12 | 359 | 4.14e-113 | 333 |
| Msa1008940 | MtrunA17_Chr4g0014661 | 50.852 | 352 | 168 | 4 | 6 | 352 | 6 | 357 | 4.20e-112 | 330 |
| Msa1008940 | MtrunA17_Chr4g0014591 | 49.716 | 352 | 172 | 4 | 6 | 352 | 6 | 357 | 2.15e-105 | 313 |
| Msa1008940 | MtrunA17_Chr5g0432211 | 43.380 | 355 | 188 | 5 | 1 | 352 | 1 | 345 | 9.15e-102 | 303 |
| Msa1008940 | MtrunA17_Chr5g0432261 | 43.228 | 347 | 166 | 4 | 11 | 352 | 7 | 327 | 4.99e-98 | 293 |
| Msa1008940 | MtrunA17_Chr7g0219171 | 94.245 | 139 | 7 | 1 | 215 | 352 | 110 | 248 | 2.58e-90 | 271 |
| Msa1008940 | MtrunA17_Chr7g0219171 | 92.857 | 126 | 9 | 0 | 1 | 126 | 1 | 126 | 5.01e-77 | 237 |
| Msa1008940 | MtrunA17_Chr4g0014601 | 49.804 | 255 | 124 | 3 | 6 | 256 | 6 | 260 | 9.42e-84 | 254 |
| Msa1008940 | MtrunA17_Chr3g0121301 | 35.417 | 336 | 205 | 7 | 20 | 348 | 27 | 357 | 8.43e-65 | 209 |
| Msa1008940 | MtrunA17_Chr4g0022021 | 33.690 | 374 | 220 | 9 | 1 | 352 | 1 | 368 | 1.18e-60 | 199 |
| Msa1008940 | MtrunA17_Chr4g0021981 | 34.270 | 356 | 217 | 8 | 8 | 352 | 19 | 368 | 3.60e-59 | 195 |
| Msa1008940 | MtrunA17_Chr1g0163601 | 32.143 | 336 | 207 | 8 | 33 | 351 | 38 | 369 | 1.50e-44 | 157 |
| Msa1008940 | MtrunA17_Chr8g0345851 | 33.725 | 255 | 161 | 5 | 94 | 344 | 33 | 283 | 7.70e-44 | 152 |
| Msa1008940 | MtrunA17_Chr3g0128011 | 30.321 | 343 | 221 | 6 | 10 | 338 | 65 | 403 | 1.31e-43 | 155 |
| Msa1008940 | MtrunA17_Chr7g0218131 | 29.518 | 332 | 218 | 7 | 33 | 351 | 41 | 369 | 5.13e-43 | 152 |
| Msa1008940 | MtrunA17_Chr7g0218271 | 29.012 | 324 | 208 | 7 | 33 | 338 | 41 | 360 | 3.20e-42 | 150 |
| Msa1008940 | MtrunA17_Chr1g0163611 | 29.494 | 356 | 224 | 8 | 14 | 351 | 23 | 369 | 3.66e-42 | 150 |
| Msa1008940 | MtrunA17_Chr7g0218261 | 29.338 | 317 | 210 | 6 | 33 | 338 | 40 | 353 | 3.70e-42 | 150 |
| Msa1008940 | MtrunA17_Chr7g0276401 | 30.818 | 318 | 205 | 6 | 31 | 337 | 47 | 360 | 7.16e-42 | 150 |
| Msa1008940 | MtrunA17_Chr7g0218181 | 28.313 | 332 | 219 | 7 | 33 | 351 | 41 | 366 | 6.01e-41 | 147 |
| Msa1008940 | MtrunA17_Chr7g0218301 | 28.402 | 338 | 219 | 8 | 33 | 351 | 41 | 374 | 8.83e-41 | 147 |
| Msa1008940 | MtrunA17_Chr5g0448091 | 32.110 | 327 | 195 | 8 | 31 | 339 | 33 | 350 | 3.81e-40 | 145 |
| Msa1008940 | MtrunA17_Chr1g0200491 | 29.755 | 326 | 202 | 8 | 33 | 339 | 41 | 358 | 5.53e-40 | 144 |
| Msa1008940 | MtrunA17_Chr8g0367441 | 28.527 | 319 | 206 | 7 | 31 | 333 | 46 | 358 | 7.84e-40 | 144 |
| Msa1008940 | MtrunA17_Chr8g0367451 | 29.560 | 318 | 206 | 6 | 31 | 334 | 45 | 358 | 3.33e-39 | 142 |
| Msa1008940 | MtrunA17_Chr8g0367491 | 28.391 | 317 | 209 | 6 | 31 | 333 | 45 | 357 | 3.33e-39 | 142 |
| Msa1008940 | MtrunA17_Chr7g0276411 | 28.302 | 318 | 210 | 7 | 30 | 333 | 30 | 343 | 1.09e-38 | 141 |
| Msa1008940 | MtrunA17_Chr8g0367501 | 28.963 | 328 | 215 | 6 | 24 | 337 | 25 | 348 | 3.52e-38 | 141 |
| Msa1008940 | MtrunA17_Chr7g0218211 | 27.410 | 332 | 225 | 7 | 33 | 351 | 40 | 368 | 4.95e-37 | 137 |
| Msa1008940 | MtrunA17_Chr1g0163621 | 29.779 | 272 | 169 | 4 | 69 | 339 | 119 | 369 | 5.02e-37 | 137 |
| Msa1008940 | MtrunA17_Chr2g0314271 | 31.013 | 316 | 206 | 6 | 31 | 337 | 27 | 339 | 3.79e-36 | 134 |
| Msa1008940 | MtrunA17_Chr3g0085211 | 28.481 | 316 | 213 | 4 | 33 | 338 | 43 | 355 | 6.81e-36 | 134 |
| Msa1008940 | MtrunA17_Chr3g0085201 | 28.438 | 320 | 208 | 8 | 33 | 338 | 30 | 342 | 9.77e-36 | 133 |
| Msa1008940 | MtrunA17_Chr2g0307521 | 32.766 | 235 | 147 | 5 | 122 | 351 | 134 | 362 | 1.17e-35 | 133 |
| Msa1008940 | MtrunA17_Chr3g0130011 | 28.451 | 355 | 235 | 11 | 9 | 351 | 10 | 357 | 2.82e-35 | 132 |
| Msa1008940 | MtrunA17_Chr3g0130061 | 28.986 | 345 | 198 | 11 | 32 | 349 | 31 | 355 | 1.84e-31 | 121 |
| Msa1008940 | MtrunA17_Chr8g0367381 | 32.778 | 180 | 116 | 2 | 142 | 319 | 149 | 325 | 1.07e-30 | 119 |
| Msa1008940 | MtrunA17_Chr6g0482291 | 28.736 | 174 | 107 | 5 | 168 | 337 | 1 | 161 | 2.75e-21 | 89.7 |
| Msa1008940 | MtrunA17_Chr4g0014611 | 53.000 | 100 | 46 | 1 | 254 | 352 | 8 | 107 | 2.30e-18 | 79.7 |
| Msa1008940 | MtrunA17_Chr8g0367401 | 31.776 | 107 | 73 | 0 | 147 | 253 | 4 | 110 | 4.82e-17 | 77.0 |
| Msa1008940 | MtrunA17_Chr8g0367461 | 38.542 | 96 | 54 | 2 | 240 | 333 | 1 | 93 | 2.05e-16 | 74.3 |
| Msa1008940 | MtrunA17_Chr4g0014671 | 46.847 | 111 | 58 | 1 | 243 | 352 | 24 | 134 | 4.07e-13 | 65.9 |
| Msa1008940 | MtrunA17_Chr4g0011691 | 41.667 | 96 | 51 | 4 | 255 | 348 | 140 | 232 | 8.08e-13 | 67.4 |
| Msa1008940 | MtrunA17_Chr1g0170941 | 42.424 | 66 | 38 | 0 | 186 | 251 | 11 | 76 | 1.18e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1008940 | AT4G35150.1 | 33.429 | 350 | 180 | 10 | 15 | 351 | 14 | 323 | 2.60e-54 | 181 |
| Msa1008940 | AT4G35160.1 | 35.196 | 358 | 206 | 12 | 15 | 351 | 28 | 380 | 6.96e-53 | 179 |
| Msa1008940 | AT5G54160.1 | 29.944 | 354 | 230 | 8 | 10 | 350 | 11 | 359 | 1.03e-45 | 160 |
| Msa1008940 | AT3G53140.1 | 30.631 | 333 | 214 | 8 | 31 | 349 | 27 | 356 | 8.87e-38 | 139 |
| Msa1008940 | AT1G51990.2 | 29.452 | 292 | 193 | 6 | 71 | 352 | 74 | 362 | 1.15e-36 | 136 |
| Msa1008940 | AT1G51990.1 | 30.272 | 294 | 188 | 8 | 71 | 352 | 74 | 362 | 3.49e-36 | 135 |
| Msa1008940 | AT1G33030.1 | 29.464 | 336 | 215 | 12 | 31 | 351 | 21 | 349 | 5.99e-36 | 134 |
| Msa1008940 | AT1G77520.1 | 29.503 | 322 | 207 | 8 | 37 | 351 | 72 | 380 | 3.34e-33 | 127 |
| Msa1008940 | AT5G53810.1 | 28.531 | 354 | 204 | 9 | 31 | 351 | 40 | 377 | 3.18e-28 | 113 |
| Msa1008940 | AT1G63140.2 | 28.409 | 352 | 220 | 8 | 24 | 351 | 37 | 380 | 4.14e-27 | 110 |
| Msa1008940 | AT1G63140.4 | 28.409 | 352 | 220 | 8 | 24 | 351 | 57 | 400 | 4.35e-27 | 110 |
| Msa1008940 | AT5G37170.2 | 32.000 | 200 | 123 | 6 | 159 | 351 | 40 | 233 | 9.29e-26 | 103 |
| Msa1008940 | AT5G37170.1 | 32.000 | 200 | 123 | 6 | 159 | 351 | 140 | 333 | 3.22e-25 | 104 |
| Msa1008940 | AT1G62900.1 | 32.353 | 204 | 132 | 3 | 151 | 351 | 4 | 204 | 1.53e-24 | 99.8 |
| Msa1008940 | AT1G77530.1 | 31.304 | 230 | 147 | 4 | 130 | 351 | 154 | 380 | 1.60e-24 | 103 |
| Msa1008940 | AT5G37170.3 | 33.333 | 174 | 106 | 5 | 185 | 351 | 15 | 185 | 3.70e-24 | 98.2 |
| Msa1008940 | AT1G76790.1 | 29.694 | 229 | 147 | 5 | 111 | 333 | 126 | 346 | 7.98e-21 | 92.8 |
| Msa1008940 | AT1G21130.1 | 33.571 | 140 | 87 | 3 | 202 | 338 | 223 | 359 | 2.65e-20 | 91.3 |
| Msa1008940 | AT1G21100.1 | 33.571 | 140 | 87 | 3 | 202 | 338 | 223 | 359 | 2.95e-20 | 91.3 |
| Msa1008940 | AT1G21110.1 | 23.934 | 305 | 196 | 9 | 41 | 333 | 74 | 354 | 1.92e-19 | 89.0 |
| Msa1008940 | AT1G21120.1 | 32.857 | 140 | 88 | 3 | 202 | 338 | 223 | 359 | 5.21e-19 | 87.4 |
| Msa1008940 | AT1G21120.2 | 32.857 | 140 | 88 | 3 | 202 | 338 | 271 | 407 | 8.35e-19 | 87.4 |
| Msa1008940 | AT1G33030.2 | 28.511 | 235 | 153 | 8 | 31 | 253 | 21 | 252 | 1.39e-17 | 82.0 |
| Msa1008940 | AT1G33030.3 | 28.511 | 235 | 153 | 8 | 31 | 253 | 21 | 252 | 2.54e-17 | 81.3 |
Find 66 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGATTCCATGTCTCTTAAA+TGG | 0.124329 | 7_1:-9646426 | Msa1008940:CDS |
| TGATTCTAAATTGATAAATT+TGG | 0.157597 | 7_1:-9645999 | Msa1008940:CDS |
| TTTGGTTATGTTTCAGAATT+TGG | 0.172715 | 7_1:+9646562 | None:intergenic |
| GATCAATACAAAAGTGTTTA+TGG | 0.190437 | 7_1:+9644923 | None:intergenic |
| ACTAAGTTTGAGAGAGAAAT+TGG | 0.197834 | 7_1:+9646358 | None:intergenic |
| GTAAACATGGCTTGTCTTAA+TGG | 0.209787 | 7_1:-9645052 | Msa1008940:CDS |
| ACACTCTTTGGTGTTACTTT+AGG | 0.224912 | 7_1:-9646091 | Msa1008940:CDS |
| GTTCTTGATCCAACTCTTTC+GGG | 0.231957 | 7_1:-9646157 | Msa1008940:CDS |
| TGTTCTTGATCCAACTCTTT+CGG | 0.264765 | 7_1:-9646158 | Msa1008940:CDS |
| AAATTGGTTTGCCATGGTTT+TGG | 0.271392 | 7_1:+9646374 | None:intergenic |
| TACTCAAATTAAGCTCCTTA+TGG | 0.296566 | 7_1:-9645077 | Msa1008940:CDS |
| TTAAATGATGTATTATATTC+AGG | 0.298723 | 7_1:+9646037 | None:intergenic |
| GAGGAAGATCTTACACTCTT+TGG | 0.320824 | 7_1:-9646103 | Msa1008940:CDS |
| GCTTCAGAGCTTCTTGTTAG+AGG | 0.330458 | 7_1:-9646214 | Msa1008940:CDS |
| CAAGTTCCATCGTCGAAAAT+AGG | 0.334139 | 7_1:-9646325 | Msa1008940:CDS |
| TTTGGTGTTACTTTAGGTTC+TGG | 0.340390 | 7_1:-9646085 | Msa1008940:CDS |
| ATAACATGGTAACAATAAAA+TGG | 0.353013 | 7_1:+9644894 | None:intergenic |
| TATCCTTATGCAATCCTTAT+CGG | 0.363472 | 7_1:+9645198 | None:intergenic |
| AAAATGGCATCATCAATTAA+TGG | 0.366895 | 7_1:-9646511 | Msa1008940:CDS |
| TGAAATGTATTGCGTTTGAT+AGG | 0.369370 | 7_1:-9645871 | Msa1008940:CDS |
| TCAAATTATTGCTTCCAGAT+AGG | 0.373036 | 7_1:+9645831 | None:intergenic |
| ATTATAATAGATAACAAGAT+TGG | 0.376857 | 7_1:+9644868 | None:intergenic |
| AAAGAAGCTGTTACAAATGA+TGG | 0.378738 | 7_1:-9645163 | Msa1008940:CDS |
| GTGGATGTTGGTGGTGGAAA+TGG | 0.384302 | 7_1:-9645932 | Msa1008940:CDS |
| ATTTGAACTTTCAACAAAGT+TGG | 0.402738 | 7_1:+9646617 | None:intergenic |
| TTTACATAATTGGACCGATA+AGG | 0.410922 | 7_1:-9645212 | Msa1008940:CDS |
| TAAAGTGATTATTATAGATA+TGG | 0.416932 | 7_1:-9645131 | Msa1008940:CDS |
| AAGAGAGAAATGAGGAAGAA+TGG | 0.419676 | 7_1:-9645027 | Msa1008940:CDS |
| AGCAAAACTGCATCAGCATT+AGG | 0.422726 | 7_1:+9645776 | None:intergenic |
| CAAGTTGTAGAGAACCTATC+TGG | 0.440623 | 7_1:-9645845 | Msa1008940:CDS |
| AAGGAGATATCTTATAGTCT+TGG | 0.440862 | 7_1:+9644978 | None:intergenic |
| AGCAATAATTTGACTTATGT+TGG | 0.474211 | 7_1:-9645821 | Msa1008940:CDS |
| TATAAGATATCTCCTTTGAC+TGG | 0.475443 | 7_1:-9644971 | Msa1008940:CDS |
| AGATTCCATGTCTCTTAAAT+GGG | 0.476440 | 7_1:-9646425 | Msa1008940:CDS |
| AACGCAATACATTTCAACTT+AGG | 0.479681 | 7_1:+9645878 | None:intergenic |
| TGATCTTTGTTTAGCACCAA+TGG | 0.482495 | 7_1:-9646188 | Msa1008940:CDS |
| GGTAACAATAAAATGGATGA+TGG | 0.489709 | 7_1:+9644901 | None:intergenic |
| AAGAAACTCTTCATAGAAGC+TGG | 0.494387 | 7_1:-9645004 | Msa1008940:CDS |
| ATAATTTGACTTATGTTGGT+GGG | 0.511853 | 7_1:-9645817 | Msa1008940:CDS |
| GTTACAAATGATGGGAAAAG+AGG | 0.516139 | 7_1:-9645154 | Msa1008940:CDS |
| AACAGCCCATTTAAGAGACA+TGG | 0.517213 | 7_1:+9646420 | None:intergenic |
| TGATGGATTGGAATCAATTG+TGG | 0.517617 | 7_1:-9645951 | Msa1008940:CDS |
| TGAACTTTCAACAAAGTTGG+TGG | 0.521441 | 7_1:+9646620 | None:intergenic |
| AAGCCATGTTTACATCCATA+AGG | 0.522966 | 7_1:+9645062 | None:intergenic |
| TTGGAATCAATTGTGGATGT+TGG | 0.527463 | 7_1:-9645944 | Msa1008940:CDS |
| AAGAGACATGGAATCTATGA+AGG | 0.530607 | 7_1:+9646432 | None:intergenic |
| AGAGAGAAATTGGTTTGCCA+TGG | 0.531316 | 7_1:+9646368 | None:intergenic |
| TAATTTGACTTATGTTGGTG+GGG | 0.537579 | 7_1:-9645816 | Msa1008940:CDS |
| TCAATTGTGGATGTTGGTGG+TGG | 0.538342 | 7_1:-9645938 | Msa1008940:CDS |
| TACATCATTTAATGATGCAA+TGG | 0.539653 | 7_1:-9646026 | Msa1008940:CDS |
| CGAAGAATCCGTTGTGCGCG+AGG | 0.543967 | 7_1:+9646278 | None:intergenic |
| AATAATTTGACTTATGTTGG+TGG | 0.546090 | 7_1:-9645818 | Msa1008940:CDS |
| GGACCGATAAGGATTGCATA+AGG | 0.547963 | 7_1:-9645201 | Msa1008940:CDS |
| AAGAAGCTGTTACAAATGAT+GGG | 0.548845 | 7_1:-9645162 | Msa1008940:CDS |
| GAACTTTCAACAAAGTTGGT+GGG | 0.558418 | 7_1:+9646621 | None:intergenic |
| GAATCAATTGTGGATGTTGG+TGG | 0.561061 | 7_1:-9645941 | Msa1008940:CDS |
| GCTCCTTATGGATGTAAACA+TGG | 0.565671 | 7_1:-9645065 | Msa1008940:CDS |
| TGATACGAACCCGAAAGAGT+TGG | 0.566568 | 7_1:+9646148 | None:intergenic |
| TCAAGAACACACTCAACCAT+TGG | 0.570476 | 7_1:+9646172 | None:intergenic |
| TAATGGAAAAGAGAGAAATG+AGG | 0.576668 | 7_1:-9645035 | Msa1008940:CDS |
| TGTGCTTTGAAAATTTCACT+TGG | 0.587882 | 7_1:+9646481 | None:intergenic |
| AACAAGATTGGTTTATAACA+TGG | 0.594745 | 7_1:+9644880 | None:intergenic |
| GATAGGTTCTCTACAACTTG+TGG | 0.612258 | 7_1:+9645848 | None:intergenic |
| CCAAACATAATCCAAAACCA+TGG | 0.655283 | 7_1:-9646385 | Msa1008940:CDS |
| ATGCGTTACCTCGCGCACAA+CGG | 0.655418 | 7_1:-9646286 | Msa1008940:CDS |
| CGTCGAAAATAGGTAACGTG+CGG | 0.696937 | 7_1:-9646315 | Msa1008940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAGTATATTTTACATAAT+TGG | - | chr7_1:9646240-9646259 | Msa1008940:CDS | 10.0% |
| !!! | TAAAGTATATTTTACATAAT+TGG | - | chr7_1:9646240-9646259 | Msa1008940:CDS | 10.0% |
| !!! | TTTTTTTGCAAATGAATTTT+TGG | + | chr7_1:9644933-9644952 | None:intergenic | 15.0% |
| !! | AATTCATTTGCAAAAAAAAA+TGG | - | chr7_1:9644935-9644954 | Msa1008940:exon | 15.0% |
| !! | TTAAATGATGTATTATATTC+AGG | + | chr7_1:9645428-9645447 | None:intergenic | 15.0% |
| !! | TGATTCTAAATTGATAAATT+TGG | - | chr7_1:9645463-9645482 | Msa1008940:intron | 15.0% |
| !! | TAATTAAATTTGTAATTGAG+TGG | + | chr7_1:9645738-9645757 | None:intergenic | 15.0% |
| !!! | GACTTTAATTTTTTATCTAA+TGG | - | chr7_1:9645966-9645985 | Msa1008940:CDS | 15.0% |
| !! | TAAAGTGATTATTATAGATA+TGG | - | chr7_1:9646331-9646350 | Msa1008940:CDS | 15.0% |
| !! | ATTATAATAGATAACAAGAT+TGG | + | chr7_1:9646597-9646616 | None:intergenic | 15.0% |
| !!! | TTTTTTTGCAAATGAATTTT+TGG | + | chr7_1:9644933-9644952 | None:intergenic | 15.0% |
| !! | AATTCATTTGCAAAAAAAAA+TGG | - | chr7_1:9644935-9644954 | Msa1008940:exon | 15.0% |
| !! | TTAAATGATGTATTATATTC+AGG | + | chr7_1:9645428-9645447 | None:intergenic | 15.0% |
| !! | TGATTCTAAATTGATAAATT+TGG | - | chr7_1:9645463-9645482 | Msa1008940:intron | 15.0% |
| !! | TAATTAAATTTGTAATTGAG+TGG | + | chr7_1:9645738-9645757 | None:intergenic | 15.0% |
| !!! | GACTTTAATTTTTTATCTAA+TGG | - | chr7_1:9645966-9645985 | Msa1008940:CDS | 15.0% |
| !! | TAAAGTGATTATTATAGATA+TGG | - | chr7_1:9646331-9646350 | Msa1008940:CDS | 15.0% |
| !! | ATTATAATAGATAACAAGAT+TGG | + | chr7_1:9646597-9646616 | None:intergenic | 15.0% |
| !!! | TGGCTAATAATTTTTATCTT+TGG | + | chr7_1:9645936-9645955 | None:intergenic | 20.0% |
| !! | AATTAAAGTCAAACTTTGTT+TGG | + | chr7_1:9645956-9645975 | None:intergenic | 20.0% |
| !! | AATTTCATGTGAAAAAGTTA+TGG | + | chr7_1:9646082-9646101 | None:intergenic | 20.0% |
| !! | ATAACATGGTAACAATAAAA+TGG | + | chr7_1:9646571-9646590 | None:intergenic | 20.0% |
| !!! | TGGCTAATAATTTTTATCTT+TGG | + | chr7_1:9645936-9645955 | None:intergenic | 20.0% |
| !! | AATTAAAGTCAAACTTTGTT+TGG | + | chr7_1:9645956-9645975 | None:intergenic | 20.0% |
| !! | AATTTCATGTGAAAAAGTTA+TGG | + | chr7_1:9646082-9646101 | None:intergenic | 20.0% |
| !! | ATAACATGGTAACAATAAAA+TGG | + | chr7_1:9646571-9646590 | None:intergenic | 20.0% |
| ! | ATTTGAACTTTCAACAAAGT+TGG | + | chr7_1:9644848-9644867 | None:intergenic | 25.0% |
| ! | TTTGGTTATGTTTCAGAATT+TGG | + | chr7_1:9644903-9644922 | None:intergenic | 25.0% |
| !!! | TGAATTTTTGGTTTGTGTTT+TGG | + | chr7_1:9644921-9644940 | None:intergenic | 25.0% |
| ! | AAAATGGCATCATCAATTAA+TGG | - | chr7_1:9644951-9644970 | Msa1008940:CDS | 25.0% |
| ! | TACATCATTTAATGATGCAA+TGG | - | chr7_1:9645436-9645455 | Msa1008940:intron | 25.0% |
| !! | AGCAATAATTTGACTTATGT+TGG | - | chr7_1:9645641-9645660 | Msa1008940:intron | 25.0% |
| !! | AATAATTTGACTTATGTTGG+TGG | - | chr7_1:9645644-9645663 | Msa1008940:intron | 25.0% |
| !! | ATAATTTGACTTATGTTGGT+GGG | - | chr7_1:9645645-9645664 | Msa1008940:intron | 25.0% |
| ! | TTAAATATAACCACATGAGT+CGG | + | chr7_1:9645831-9645850 | None:intergenic | 25.0% |
| ! | GATAGAAATGCTAAAATTAG+AGG | - | chr7_1:9645988-9646007 | Msa1008940:CDS | 25.0% |
| !! | GACAATTTACTTTGTTTCTT+TGG | - | chr7_1:9646116-9646135 | Msa1008940:CDS | 25.0% |
| ! | ATTCATTACGAAATGAGTTA+AGG | + | chr7_1:9646168-9646187 | None:intergenic | 25.0% |
| ! | CAAAACAAAACAAAAAACAG+AGG | + | chr7_1:9646215-9646234 | None:intergenic | 25.0% |
| !!! | GATCAATACAAAAGTGTTTA+TGG | + | chr7_1:9646542-9646561 | None:intergenic | 25.0% |
| !!! | AACAAGATTGGTTTATAACA+TGG | + | chr7_1:9646585-9646604 | None:intergenic | 25.0% |
| ! | ATTTGAACTTTCAACAAAGT+TGG | + | chr7_1:9644848-9644867 | None:intergenic | 25.0% |
| ! | TTTGGTTATGTTTCAGAATT+TGG | + | chr7_1:9644903-9644922 | None:intergenic | 25.0% |
| !!! | TGAATTTTTGGTTTGTGTTT+TGG | + | chr7_1:9644921-9644940 | None:intergenic | 25.0% |
| ! | AAAATGGCATCATCAATTAA+TGG | - | chr7_1:9644951-9644970 | Msa1008940:CDS | 25.0% |
| ! | TACATCATTTAATGATGCAA+TGG | - | chr7_1:9645436-9645455 | Msa1008940:intron | 25.0% |
| !! | AGCAATAATTTGACTTATGT+TGG | - | chr7_1:9645641-9645660 | Msa1008940:intron | 25.0% |
| !! | AATAATTTGACTTATGTTGG+TGG | - | chr7_1:9645644-9645663 | Msa1008940:intron | 25.0% |
| !! | ATAATTTGACTTATGTTGGT+GGG | - | chr7_1:9645645-9645664 | Msa1008940:intron | 25.0% |
| ! | TTAAATATAACCACATGAGT+CGG | + | chr7_1:9645831-9645850 | None:intergenic | 25.0% |
| ! | GATAGAAATGCTAAAATTAG+AGG | - | chr7_1:9645988-9646007 | Msa1008940:CDS | 25.0% |
| !! | GACAATTTACTTTGTTTCTT+TGG | - | chr7_1:9646116-9646135 | Msa1008940:CDS | 25.0% |
| ! | ATTCATTACGAAATGAGTTA+AGG | + | chr7_1:9646168-9646187 | None:intergenic | 25.0% |
| ! | CAAAACAAAACAAAAAACAG+AGG | + | chr7_1:9646215-9646234 | None:intergenic | 25.0% |
| !!! | GATCAATACAAAAGTGTTTA+TGG | + | chr7_1:9646542-9646561 | None:intergenic | 25.0% |
| !!! | AACAAGATTGGTTTATAACA+TGG | + | chr7_1:9646585-9646604 | None:intergenic | 25.0% |
| !! | TGTGCTTTGAAAATTTCACT+TGG | + | chr7_1:9644984-9645003 | None:intergenic | 30.0% |
| TAGATTCCATGTCTCTTAAA+TGG | - | chr7_1:9645036-9645055 | Msa1008940:CDS | 30.0% | |
| AGATTCCATGTCTCTTAAAT+GGG | - | chr7_1:9645037-9645056 | Msa1008940:CDS | 30.0% | |
| ACTAAGTTTGAGAGAGAAAT+TGG | + | chr7_1:9645107-9645126 | None:intergenic | 30.0% | |
| ! | GCTCAAAAAATGGATTTATG+AGG | - | chr7_1:9645340-9645359 | Msa1008940:intron | 30.0% |
| !!! | TTACTTTAGGTTCTGGTTTT+TGG | - | chr7_1:9645384-9645403 | Msa1008940:intron | 30.0% |
| !!! | TACTTTAGGTTCTGGTTTTT+GGG | - | chr7_1:9645385-9645404 | Msa1008940:intron | 30.0% |
| ! | GATTGTGATTTTGTGTTTGA+TGG | - | chr7_1:9645494-9645513 | Msa1008940:intron | 30.0% |
| !! | TGATTTTGTGTTTGATGGAT+TGG | - | chr7_1:9645499-9645518 | Msa1008940:intron | 30.0% |
| AACGCAATACATTTCAACTT+AGG | + | chr7_1:9645587-9645606 | None:intergenic | 30.0% | |
| TGAAATGTATTGCGTTTGAT+AGG | - | chr7_1:9645591-9645610 | Msa1008940:intron | 30.0% | |
| TCAAATTATTGCTTCCAGAT+AGG | + | chr7_1:9645634-9645653 | None:intergenic | 30.0% | |
| ! | TAATTTGACTTATGTTGGTG+GGG | - | chr7_1:9645646-9645665 | Msa1008940:intron | 30.0% |
| ATTTGTAATTGAGTGGACAT+TGG | + | chr7_1:9645731-9645750 | None:intergenic | 30.0% | |
| GCACATTCACTATAAAATGT+CGG | + | chr7_1:9645778-9645797 | None:intergenic | 30.0% | |
| ! | TTTTATAGTGAATGTGCGTT+CGG | - | chr7_1:9645781-9645800 | Msa1008940:CDS | 30.0% |
| TTTACATAATTGGACCGATA+AGG | - | chr7_1:9646250-9646269 | Msa1008940:CDS | 30.0% | |
| TATCCTTATGCAATCCTTAT+CGG | + | chr7_1:9646267-9646286 | None:intergenic | 30.0% | |
| AAAGAAGCTGTTACAAATGA+TGG | - | chr7_1:9646299-9646318 | Msa1008940:CDS | 30.0% | |
| AAGAAGCTGTTACAAATGAT+GGG | - | chr7_1:9646300-9646319 | Msa1008940:CDS | 30.0% | |
| TACTCAAATTAAGCTCCTTA+TGG | - | chr7_1:9646385-9646404 | Msa1008940:CDS | 30.0% | |
| TAATGGAAAAGAGAGAAATG+AGG | - | chr7_1:9646427-9646446 | Msa1008940:CDS | 30.0% | |
| AAGGAGATATCTTATAGTCT+TGG | + | chr7_1:9646487-9646506 | None:intergenic | 30.0% | |
| TATAAGATATCTCCTTTGAC+TGG | - | chr7_1:9646491-9646510 | Msa1008940:CDS | 30.0% | |
| GGTAACAATAAAATGGATGA+TGG | + | chr7_1:9646564-9646583 | None:intergenic | 30.0% | |
| !! | TGTGCTTTGAAAATTTCACT+TGG | + | chr7_1:9644984-9645003 | None:intergenic | 30.0% |
| TAGATTCCATGTCTCTTAAA+TGG | - | chr7_1:9645036-9645055 | Msa1008940:CDS | 30.0% | |
| AGATTCCATGTCTCTTAAAT+GGG | - | chr7_1:9645037-9645056 | Msa1008940:CDS | 30.0% | |
| ACTAAGTTTGAGAGAGAAAT+TGG | + | chr7_1:9645107-9645126 | None:intergenic | 30.0% | |
| ! | GCTCAAAAAATGGATTTATG+AGG | - | chr7_1:9645340-9645359 | Msa1008940:intron | 30.0% |
| !!! | TTACTTTAGGTTCTGGTTTT+TGG | - | chr7_1:9645384-9645403 | Msa1008940:intron | 30.0% |
| !!! | TACTTTAGGTTCTGGTTTTT+GGG | - | chr7_1:9645385-9645404 | Msa1008940:intron | 30.0% |
| ! | GATTGTGATTTTGTGTTTGA+TGG | - | chr7_1:9645494-9645513 | Msa1008940:intron | 30.0% |
| !! | TGATTTTGTGTTTGATGGAT+TGG | - | chr7_1:9645499-9645518 | Msa1008940:intron | 30.0% |
| AACGCAATACATTTCAACTT+AGG | + | chr7_1:9645587-9645606 | None:intergenic | 30.0% | |
| TGAAATGTATTGCGTTTGAT+AGG | - | chr7_1:9645591-9645610 | Msa1008940:intron | 30.0% | |
| TCAAATTATTGCTTCCAGAT+AGG | + | chr7_1:9645634-9645653 | None:intergenic | 30.0% | |
| ! | TAATTTGACTTATGTTGGTG+GGG | - | chr7_1:9645646-9645665 | Msa1008940:intron | 30.0% |
| ATTTGTAATTGAGTGGACAT+TGG | + | chr7_1:9645731-9645750 | None:intergenic | 30.0% | |
| GCACATTCACTATAAAATGT+CGG | + | chr7_1:9645778-9645797 | None:intergenic | 30.0% | |
| ! | TTTTATAGTGAATGTGCGTT+CGG | - | chr7_1:9645781-9645800 | Msa1008940:CDS | 30.0% |
| TTTACATAATTGGACCGATA+AGG | - | chr7_1:9646250-9646269 | Msa1008940:CDS | 30.0% | |
| TATCCTTATGCAATCCTTAT+CGG | + | chr7_1:9646267-9646286 | None:intergenic | 30.0% | |
| AAAGAAGCTGTTACAAATGA+TGG | - | chr7_1:9646299-9646318 | Msa1008940:CDS | 30.0% | |
| AAGAAGCTGTTACAAATGAT+GGG | - | chr7_1:9646300-9646319 | Msa1008940:CDS | 30.0% | |
| TACTCAAATTAAGCTCCTTA+TGG | - | chr7_1:9646385-9646404 | Msa1008940:CDS | 30.0% | |
| TAATGGAAAAGAGAGAAATG+AGG | - | chr7_1:9646427-9646446 | Msa1008940:CDS | 30.0% | |
| AAGGAGATATCTTATAGTCT+TGG | + | chr7_1:9646487-9646506 | None:intergenic | 30.0% | |
| TATAAGATATCTCCTTTGAC+TGG | - | chr7_1:9646491-9646510 | Msa1008940:CDS | 30.0% | |
| GGTAACAATAAAATGGATGA+TGG | + | chr7_1:9646564-9646583 | None:intergenic | 30.0% | |
| ! | GAACTTTCAACAAAGTTGGT+GGG | + | chr7_1:9644844-9644863 | None:intergenic | 35.0% |
| TGAACTTTCAACAAAGTTGG+TGG | + | chr7_1:9644845-9644864 | None:intergenic | 35.0% | |
| AAGAGACATGGAATCTATGA+AGG | + | chr7_1:9645033-9645052 | None:intergenic | 35.0% | |
| !!! | CCATGGTTTTGGATTATGTT+TGG | + | chr7_1:9645080-9645099 | None:intergenic | 35.0% |
| CCAAACATAATCCAAAACCA+TGG | - | chr7_1:9645077-9645096 | Msa1008940:CDS | 35.0% | |
| !!! | AAATTGGTTTGCCATGGTTT+TGG | + | chr7_1:9645091-9645110 | None:intergenic | 35.0% |
| ! | TGATCTTTGTTTAGCACCAA+TGG | - | chr7_1:9645274-9645293 | Msa1008940:intron | 35.0% |
| TGTTCTTGATCCAACTCTTT+CGG | - | chr7_1:9645304-9645323 | Msa1008940:intron | 35.0% | |
| CGTATCATGAGCTCAAAAAA+TGG | - | chr7_1:9645330-9645349 | Msa1008940:intron | 35.0% | |
| !! | ACACTCTTTGGTGTTACTTT+AGG | - | chr7_1:9645371-9645390 | Msa1008940:intron | 35.0% |
| !! | TTTGGTGTTACTTTAGGTTC+TGG | - | chr7_1:9645377-9645396 | Msa1008940:intron | 35.0% |
| !! | TGATGGATTGGAATCAATTG+TGG | - | chr7_1:9645511-9645530 | Msa1008940:intron | 35.0% |
| TTGGAATCAATTGTGGATGT+TGG | - | chr7_1:9645518-9645537 | Msa1008940:intron | 35.0% | |
| ! | GTTACAAATGATGGGAAAAG+AGG | - | chr7_1:9646308-9646327 | Msa1008940:CDS | 35.0% |
| AAGCCATGTTTACATCCATA+AGG | + | chr7_1:9646403-9646422 | None:intergenic | 35.0% | |
| ! | GTAAACATGGCTTGTCTTAA+TGG | - | chr7_1:9646410-9646429 | Msa1008940:CDS | 35.0% |
| AAGAGAGAAATGAGGAAGAA+TGG | - | chr7_1:9646435-9646454 | Msa1008940:CDS | 35.0% | |
| AAGAAACTCTTCATAGAAGC+TGG | - | chr7_1:9646458-9646477 | Msa1008940:CDS | 35.0% | |
| AGAGACAAAAATCCAGTCAA+AGG | + | chr7_1:9646506-9646525 | None:intergenic | 35.0% | |
| ! | GAACTTTCAACAAAGTTGGT+GGG | + | chr7_1:9644844-9644863 | None:intergenic | 35.0% |
| TGAACTTTCAACAAAGTTGG+TGG | + | chr7_1:9644845-9644864 | None:intergenic | 35.0% | |
| AAGAGACATGGAATCTATGA+AGG | + | chr7_1:9645033-9645052 | None:intergenic | 35.0% | |
| !!! | CCATGGTTTTGGATTATGTT+TGG | + | chr7_1:9645080-9645099 | None:intergenic | 35.0% |
| CCAAACATAATCCAAAACCA+TGG | - | chr7_1:9645077-9645096 | Msa1008940:CDS | 35.0% | |
| !!! | AAATTGGTTTGCCATGGTTT+TGG | + | chr7_1:9645091-9645110 | None:intergenic | 35.0% |
| ! | TGATCTTTGTTTAGCACCAA+TGG | - | chr7_1:9645274-9645293 | Msa1008940:intron | 35.0% |
| TGTTCTTGATCCAACTCTTT+CGG | - | chr7_1:9645304-9645323 | Msa1008940:intron | 35.0% | |
| CGTATCATGAGCTCAAAAAA+TGG | - | chr7_1:9645330-9645349 | Msa1008940:intron | 35.0% | |
| !! | ACACTCTTTGGTGTTACTTT+AGG | - | chr7_1:9645371-9645390 | Msa1008940:intron | 35.0% |
| !! | TTTGGTGTTACTTTAGGTTC+TGG | - | chr7_1:9645377-9645396 | Msa1008940:intron | 35.0% |
| !! | TGATGGATTGGAATCAATTG+TGG | - | chr7_1:9645511-9645530 | Msa1008940:intron | 35.0% |
| TTGGAATCAATTGTGGATGT+TGG | - | chr7_1:9645518-9645537 | Msa1008940:intron | 35.0% | |
| ! | GTTACAAATGATGGGAAAAG+AGG | - | chr7_1:9646308-9646327 | Msa1008940:CDS | 35.0% |
| AAGCCATGTTTACATCCATA+AGG | + | chr7_1:9646403-9646422 | None:intergenic | 35.0% | |
| ! | GTAAACATGGCTTGTCTTAA+TGG | - | chr7_1:9646410-9646429 | Msa1008940:CDS | 35.0% |
| AAGAGAGAAATGAGGAAGAA+TGG | - | chr7_1:9646435-9646454 | Msa1008940:CDS | 35.0% | |
| AAGAAACTCTTCATAGAAGC+TGG | - | chr7_1:9646458-9646477 | Msa1008940:CDS | 35.0% | |
| AGAGACAAAAATCCAGTCAA+AGG | + | chr7_1:9646506-9646525 | None:intergenic | 35.0% | |
| AACAGCCCATTTAAGAGACA+TGG | + | chr7_1:9645045-9645064 | None:intergenic | 40.0% | |
| !! | AGAGAGAAATTGGTTTGCCA+TGG | + | chr7_1:9645097-9645116 | None:intergenic | 40.0% |
| CAAGTTCCATCGTCGAAAAT+AGG | - | chr7_1:9645137-9645156 | Msa1008940:CDS | 40.0% | |
| ! | ACGTTACCTATTTTCGACGA+TGG | + | chr7_1:9645146-9645165 | None:intergenic | 40.0% |
| TCAAGAACACACTCAACCAT+TGG | + | chr7_1:9645293-9645312 | None:intergenic | 40.0% | |
| GTTCTTGATCCAACTCTTTC+GGG | - | chr7_1:9645305-9645324 | Msa1008940:intron | 40.0% | |
| GAGGAAGATCTTACACTCTT+TGG | - | chr7_1:9645359-9645378 | Msa1008940:intron | 40.0% | |
| GAATCAATTGTGGATGTTGG+TGG | - | chr7_1:9645521-9645540 | Msa1008940:intron | 40.0% | |
| GATAGGTTCTCTACAACTTG+TGG | + | chr7_1:9645617-9645636 | None:intergenic | 40.0% | |
| CAAGTTGTAGAGAACCTATC+TGG | - | chr7_1:9645617-9645636 | Msa1008940:intron | 40.0% | |
| AGCAAAACTGCATCAGCATT+AGG | + | chr7_1:9645689-9645708 | None:intergenic | 40.0% | |
| ! | TGCTGATGCAGTTTTGCTTA+AGG | - | chr7_1:9645691-9645710 | Msa1008940:intron | 40.0% |
| TCAATAGTGCAAGTCTACGA+AGG | + | chr7_1:9645913-9645932 | None:intergenic | 40.0% | |
| GCTCCTTATGGATGTAAACA+TGG | - | chr7_1:9646397-9646416 | Msa1008940:CDS | 40.0% | |
| AACAGCCCATTTAAGAGACA+TGG | + | chr7_1:9645045-9645064 | None:intergenic | 40.0% | |
| !! | AGAGAGAAATTGGTTTGCCA+TGG | + | chr7_1:9645097-9645116 | None:intergenic | 40.0% |
| CAAGTTCCATCGTCGAAAAT+AGG | - | chr7_1:9645137-9645156 | Msa1008940:CDS | 40.0% | |
| ! | ACGTTACCTATTTTCGACGA+TGG | + | chr7_1:9645146-9645165 | None:intergenic | 40.0% |
| TCAAGAACACACTCAACCAT+TGG | + | chr7_1:9645293-9645312 | None:intergenic | 40.0% | |
| GTTCTTGATCCAACTCTTTC+GGG | - | chr7_1:9645305-9645324 | Msa1008940:intron | 40.0% | |
| GAGGAAGATCTTACACTCTT+TGG | - | chr7_1:9645359-9645378 | Msa1008940:intron | 40.0% | |
| GAATCAATTGTGGATGTTGG+TGG | - | chr7_1:9645521-9645540 | Msa1008940:intron | 40.0% | |
| GATAGGTTCTCTACAACTTG+TGG | + | chr7_1:9645617-9645636 | None:intergenic | 40.0% | |
| CAAGTTGTAGAGAACCTATC+TGG | - | chr7_1:9645617-9645636 | Msa1008940:intron | 40.0% | |
| AGCAAAACTGCATCAGCATT+AGG | + | chr7_1:9645689-9645708 | None:intergenic | 40.0% | |
| ! | TGCTGATGCAGTTTTGCTTA+AGG | - | chr7_1:9645691-9645710 | Msa1008940:intron | 40.0% |
| TCAATAGTGCAAGTCTACGA+AGG | + | chr7_1:9645913-9645932 | None:intergenic | 40.0% | |
| GCTCCTTATGGATGTAAACA+TGG | - | chr7_1:9646397-9646416 | Msa1008940:CDS | 40.0% | |
| CGTCGAAAATAGGTAACGTG+CGG | - | chr7_1:9645147-9645166 | Msa1008940:CDS | 45.0% | |
| GCTTCAGAGCTTCTTGTTAG+AGG | - | chr7_1:9645248-9645267 | Msa1008940:intron | 45.0% | |
| TGATACGAACCCGAAAGAGT+TGG | + | chr7_1:9645317-9645336 | None:intergenic | 45.0% | |
| ! | TCAATTGTGGATGTTGGTGG+TGG | - | chr7_1:9645524-9645543 | Msa1008940:intron | 45.0% |
| !! | ATAAAATGTCGGTGCTGCGT+AGG | + | chr7_1:9645767-9645786 | None:intergenic | 45.0% |
| TATAACCACATGAGTCGGTG+TGG | + | chr7_1:9645826-9645845 | None:intergenic | 45.0% | |
| GTCTACGAAGGACGTCTATA+GGG | + | chr7_1:9645901-9645920 | None:intergenic | 45.0% | |
| AGTCTACGAAGGACGTCTAT+AGG | + | chr7_1:9645902-9645921 | None:intergenic | 45.0% | |
| GGACCGATAAGGATTGCATA+AGG | - | chr7_1:9646261-9646280 | Msa1008940:CDS | 45.0% | |
| CGTCGAAAATAGGTAACGTG+CGG | - | chr7_1:9645147-9645166 | Msa1008940:CDS | 45.0% | |
| GCTTCAGAGCTTCTTGTTAG+AGG | - | chr7_1:9645248-9645267 | Msa1008940:intron | 45.0% | |
| TGATACGAACCCGAAAGAGT+TGG | + | chr7_1:9645317-9645336 | None:intergenic | 45.0% | |
| ! | TCAATTGTGGATGTTGGTGG+TGG | - | chr7_1:9645524-9645543 | Msa1008940:intron | 45.0% |
| !! | ATAAAATGTCGGTGCTGCGT+AGG | + | chr7_1:9645767-9645786 | None:intergenic | 45.0% |
| TATAACCACATGAGTCGGTG+TGG | + | chr7_1:9645826-9645845 | None:intergenic | 45.0% | |
| GTCTACGAAGGACGTCTATA+GGG | + | chr7_1:9645901-9645920 | None:intergenic | 45.0% | |
| AGTCTACGAAGGACGTCTAT+AGG | + | chr7_1:9645902-9645921 | None:intergenic | 45.0% | |
| GGACCGATAAGGATTGCATA+AGG | - | chr7_1:9646261-9646280 | Msa1008940:CDS | 45.0% | |
| !! | GTGGATGTTGGTGGTGGAAA+TGG | - | chr7_1:9645530-9645549 | Msa1008940:intron | 50.0% |
| CGTCTATAGGGACAAGAACG+TGG | + | chr7_1:9645889-9645908 | None:intergenic | 50.0% | |
| !! | GTGGATGTTGGTGGTGGAAA+TGG | - | chr7_1:9645530-9645549 | Msa1008940:intron | 50.0% |
| CGTCTATAGGGACAAGAACG+TGG | + | chr7_1:9645889-9645908 | None:intergenic | 50.0% | |
| ATGCGTTACCTCGCGCACAA+CGG | - | chr7_1:9645176-9645195 | Msa1008940:CDS | 55.0% | |
| !! | GTGTTCCACACCGACTCATG+TGG | - | chr7_1:9645818-9645837 | Msa1008940:CDS | 55.0% |
| ATGCGTTACCTCGCGCACAA+CGG | - | chr7_1:9645176-9645195 | Msa1008940:CDS | 55.0% | |
| !! | GTGTTCCACACCGACTCATG+TGG | - | chr7_1:9645818-9645837 | Msa1008940:CDS | 55.0% |
| CGAAGAATCCGTTGTGCGCG+AGG | + | chr7_1:9645187-9645206 | None:intergenic | 60.0% | |
| CGAAGAATCCGTTGTGCGCG+AGG | + | chr7_1:9645187-9645206 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 9644824 | 9646660 | 9644824 | ID=Msa1008940;Name=Msa1008940 |
| chr7_1 | mRNA | 9644824 | 9646660 | 9644824 | ID=Msa1008940-mRNA-1;Parent=Msa1008940;Name=Msa1008940-mRNA-1;_AED=0.08;_eAED=0.08;_QI=130|1|1|1|1|1|2|116|352 |
| chr7_1 | exon | 9644824 | 9645239 | 9644824 | ID=Msa1008940-mRNA-1:exon:2722;Parent=Msa1008940-mRNA-1 |
| chr7_1 | exon | 9645772 | 9646660 | 9645772 | ID=Msa1008940-mRNA-1:exon:2721;Parent=Msa1008940-mRNA-1 |
| chr7_1 | five_prime_UTR | 9646531 | 9646660 | 9646531 | ID=Msa1008940-mRNA-1:five_prime_utr;Parent=Msa1008940-mRNA-1 |
| chr7_1 | CDS | 9645772 | 9646530 | 9645772 | ID=Msa1008940-mRNA-1:cds;Parent=Msa1008940-mRNA-1 |
| chr7_1 | CDS | 9644940 | 9645239 | 9644940 | ID=Msa1008940-mRNA-1:cds;Parent=Msa1008940-mRNA-1 |
| chr7_1 | three_prime_UTR | 9644824 | 9644939 | 9644824 | ID=Msa1008940-mRNA-1:three_prime_utr;Parent=Msa1008940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
