AlfalfaGEDB | Msa1009210

M. sativa cultivar zhongmu-4 / Msa1009210

KEGG: -
GO: GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958
PFAM: PF12819.10

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1009210	XP_013447623.2	83.805	883	75	4	1	815	11	893	0.0	1450

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1009210	sp\|Q9FN92\|Y5597_ARATH	35.812	807	392	24	12	745	5	758	6.35e-126	400

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1009210	A0A072TW19	83.805	883	75	4	1	815	1	883	0.0	1449

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0063170	Msa1009210	0.815902	7.286157e-52	-8.615850e-47
Msa1009210	Msa1138480	0.801115	1.048208e-48	-8.615850e-47
Msa1009210	Msa1138500	0.805283	1.438669e-49	-8.615850e-47

Showing 1 to 3 of 3 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1009210	MtrunA17_Chr7g0219571	83.805	883	75	4	1	815	1	883	1449
Msa1009210	MtrunA17_Chr7g0219651	78.335	877	124	8	1	815	996	1868	1345
Msa1009210	MtrunA17_Chr7g0219651	65.820	866	181	12	38	813	36	876	1094
Msa1009210	MtrunA17_Chr4g0025961	71.654	889	174	8	1	815	1	885	1264
Msa1009210	MtrunA17_Chr7g0219601	67.678	857	182	14	38	815	36	876	1121
Msa1009210	MtrunA17_Chr7g0219611	67.696	842	189	11	38	815	36	858	1116
Msa1009210	MtrunA17_Chr7g0219691	63.509	855	220	12	38	804	38	888	1040
Msa1009210	MtrunA17_Chr7g0219781	62.587	858	227	11	38	804	38	892	1030
Msa1009210	MtrunA17_Chr7g0219721	63.041	855	224	12	38	804	38	888	1027
Msa1009210	MtrunA17_Chr7g0219671	62.128	874	228	15	27	804	23	889	1026

Showing 1 to 10 of 515 entries

Previous1 2 3 4 5…52Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1009210	AT5G59700.1	35.812	807	392	24	12	745	5	758	6.45e-127	400
Msa1009210	AT2G39360.1	34.214	833	390	28	12	752	5	771	3.54e-121	385
Msa1009210	AT5G24010.1	34.861	829	398	31	23	762	11	786	7.64e-121	384
Msa1009210	AT3G46290.1	35.180	776	394	21	36	745	29	761	7.10e-118	377
Msa1009210	AT3G51550.1	52.459	366	152	5	443	787	495	859	3.94e-112	363
Msa1009210	AT3G51550.1	36.855	407	227	14	38	438	36	418	6.22e-59	216
Msa1009210	AT5G39000.1	57.643	314	113	5	450	745	488	799	3.40e-110	357
Msa1009210	AT5G39000.1	37.381	420	211	17	36	438	30	414	5.15e-54	202
Msa1009210	AT5G38990.1	57.756	303	110	3	461	745	504	806	6.20e-110	357
Msa1009210	AT5G38990.1	35.240	437	247	19	15	439	1	413	1.73e-53	200

Showing 1 to 10 of 512 entries

Previous1 2 3 4 5…52Next

Find 171 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAATACTAGACAGTA+GGG	0.562855	7_1:-10237787	None:intergenic
AAAGACGGGAGTTCGGTTTG+TGG	0.469655	7_1:-10237954	None:intergenic
AAATAACTTGATACACTAAG+TGG	0.533961	7_1:-10238575	None:intergenic
AAATCTCAATTCCATTCAGC+AGG	0.482610	7_1:-10239006	None:intergenic
AAATCTGATGTGTACTCGTT+CGG	0.473577	7_1:+10239886	Msa1009210:CDS
AAATGTTACGATTCTATCAC+AGG	0.532404	7_1:+10239997	Msa1009210:CDS
AACAGCCTTTCTCTGGGATT+GGG	0.409947	7_1:+10240271	Msa1009210:CDS
AACATACCTGTATCATGATT+TGG	0.369584	7_1:-10238506	None:intergenic
AACTACCATTCAAAGACACT+TGG	0.519257	7_1:+10238398	Msa1009210:CDS
AACTACCCATGTCAGCACGA+TGG	0.701571	7_1:+10239804	Msa1009210:CDS

Showing 1 to 10 of 171 entries

Previous1 2 3 4 5…18Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATAGAGGCGAAGAAAAATA+GGG	-	chr7_1:10238088-10238107	None:intergenic	30.0%
AAATAGAGGCGAAGAAAAAT+AGG	-	chr7_1:10238089-10238108	None:intergenic	30.0%
TCAGTGTAATAGAGAAAAGA+AGG	-	chr7_1:10238365-10238384	None:intergenic	30.0%
GATTCTTAACAACAAAGCTA+TGG	+	chr7_1:10238442-10238461	Msa1009210:CDS	30.0%
AACATACCTGTATCATGATT+TGG	-	chr7_1:10238509-10238528	None:intergenic	30.0%
TACTTAACTGCAAGAAGTTA+TGG	+	chr7_1:10238659-10238678	Msa1009210:CDS	30.0%
GAAATGACGATAAGAAATCA+AGG	+	chr7_1:10238773-10238792	Msa1009210:CDS	30.0%
AGTGATAAAACTAATCTTGC+AGG	+	chr7_1:10239037-10239056	Msa1009210:CDS	30.0%
GTGATAAAACTAATCTTGCA+GGG	+	chr7_1:10239038-10239057	Msa1009210:CDS	30.0%
GGGTAAATATCAAAATCCAT+TGG	+	chr7_1:10239058-10239077	Msa1009210:intron	30.0%

Showing 1 to 10 of 212 entries

Previous1 2 3 4 5…22Next

Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	10237747	10240344	10237747	ID=Msa1009210;Name=Msa1009210
chr7_1	mRNA	10237747	10240344	10237747	ID=Msa1009210-mRNA-1;Parent=Msa1009210;Name=Msa1009210-mRNA-1;_AED=0.85;_eAED=0.85;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|815
chr7_1	exon	10237747	10239059	10237747	ID=Msa1009210-mRNA-1:exon:2849;Parent=Msa1009210-mRNA-1
chr7_1	exon	10239210	10240344	10239210	ID=Msa1009210-mRNA-1:exon:2850;Parent=Msa1009210-mRNA-1
chr7_1	CDS	10237747	10239059	10237747	ID=Msa1009210-mRNA-1:cds;Parent=Msa1009210-mRNA-1
chr7_1	CDS	10239210	10240344	10239210	ID=Msa1009210-mRNA-1:cds;Parent=Msa1009210-mRNA-1

Gene Sequence

>Msa1009210

ATGGCCAACCTCCTAAAAATCATAGTTCCTAGTAAAATCACCCTACTGTCTAGTATTTTGTTTATCCTTCTTCTTTTGTTCCCTCAAGTAGTTAACTGCTCATATGATATTTTAGTTGTGAATTGTGGCCACTCCAACGTTACTATCTTTGAAAATCGAACATGGGTTGGGGACACGGATAACACCAAATTATTCTCTATCATTGAACCACAAACCGAACTCCCGTCTTTCAAAGCCAAAGCTAATCCTAACTCTGATTCTGTTAAGCGAATTCCCTTCGCCTCTGCACGTATTTCTTTTTCGAATTTCACATTCTCCTTTTCTTCCATCACCAATGGCCCTATTTTTCTTCGCCTCTATTTTTACCCAACATCGTATGAACACATTGAAACCTTCAACGCCCGCTTCACAGTCAAAGTAGGAACCAACCTTACCCTTCTCAAAGACTTTAATCCCTCACTTTGGCTTTCAAACGATAACAAGACAGTCACCAAAGAATATTGCATCCAAATTACTCCAAATGAGAAGCTAAACATAACTTTCATTCCAAAATATACAAACACAAACCAATTAAATGGTTTAGCTTTCATCAACGAAATTGAGATTGTATCAATGCCTTCTTTTCTCTATTACACTGATCTCAATGACACAAACTACCATTCAAAGACACTTGGTTTTGACAGCAATGAATACCAGATTCTTAACAACAAAGCTATGGAAACAGTTTACAGAGTCAACGTTGGTGAAAATCAAGTTCCACCAAATCATGATACAGGTATGTTTCGCAATTGGGACAATGATTTTCCTCGTTACTTGGAGAAAGAATATCCACTTAGTGTATCAAGTTATTTTGGACATCATCTCAACTTTTTAAACAATAACATTCCAAATTACACTGCACCAGAAGCTGTATACTTAACTGCAAGAAGTTATGGAATGTATGCCACAGAGGATTACAATGTAACTTGGAATTTTGAAGTCGATTCTTCTTTTACTTATATGGTAAGATTGCACTTTTGTGAGTTTGAAATGACGATAAGAAATCAAGGTGATGGAGTCTTTCAGATTTTCATAGCTAACATTCTAGCTGAGGAAAAAGCTGATGTGATAAGGTGGAGTGGTGCTCATATGGTTCCTGTTCACAGGGATTATGTTGTGCCTATGTACTCTGAAGAAGGAAGCTCTCAAATTGAAAGAGTTAATCTTTCAATCAAGCTTCAACGAGCACCAGAAGCTACTTACACAGTATATCGTGATGTCCTGCTGAATGGAATTGAGATTTTCAAAATAAGTGATAAAACTAATCTTGCAGGGCTAAGCAGAAGGTTTCACAATGCCATGGCAGATAATTCCTCTAAGACAAAGAAAATAGAGTTATTATCTCTGCCGCCCCATTTGTGTCGCTACTTTACAATCGCGGAGATCAGAGCAGCCACAAACAACTTTGACGATGATTTCATCATCGGAGTTGGAGGGTTTGGCAACGTGTACAAAGGTTGTGTCGATGGATCCACACTAGTTGCGATAAAACGCCTCAAATCAGGCTCTCAACAAGGTGCCAACGAGTTCATAAACGAGATCGAGTTGCTCTCCCAACTTCGCCACATTCACTTGGTGTCCCTTGTGGGATATTGCAATGACGACACAGAGATGATTCTGGTTTATGAGTTCATGCAGCACGATACTCTTTGCGAGTATCTTTATGGTTCTAATAACCAGCCCCTATCGTGGAAGCAGAGGCTTGAGATTCTTTTGGGTGCAGCGAGAGGGCTGAATTATCTTCATACTGAGGTGAAACAGAAAATAATACACCGTGACGTGAAGAGCACTAACATATTGTTGGATGACAAATGGGTGGCTAAGGTTTCCGACTTTGGGTTATCCAAGGTGGGACCGACAGGGATATCAACTACCCATGTCAGCACGATGGTGAACGGGAGCCTCGGATATTTGGATCCCGAATATTATATGCTCCAAAGGCTAACTCTAAAATCTGATGTGTACTCGTTCGGTGTGGTGCTTCTTGAGGTGTTGTGTGCTAGACCACCTTTGGTTCGTGATTTGGATAAGAATACGGCTAGTCTAGTTTGTTGGTTTAAAAAATGTTACGATTCTATCACAGGTGAGTGCTTGAAATATTATTGCAAGTTGGCGTTCAGTTGTTTGCATGATGATGGGACTCAACGACCCTCAATGAGTCAAGTGGTTGGGGGTTTAGAGTTTGCATTGCAATTGGTAGTGAGTGAAGAAGATAGCCAATATGGTATGACCCAAAAAGATAGGACATATATGAGTGATGAATGCAGTGACTTGCATTTCACGAGATCGCACACCTACAAGGAGAGCACAGTATCAGCGAGGCTAGGTACTCAAGAACAGCCTTTCTCTGGGATTGGGAATCAAAGAACACGGTCGTATTCATGTCAAAACTTCAAAATGTATATTTAG

Protein sequence

>Msa1009210

MANLLKIIVPSKITLLSSILFILLLLFPQVVNCSYDILVVNCGHSNVTIFENRTWVGDTDNTKLFSIIEPQTELPSFKAKANPNSDSVKRIPFASARISFSNFTFSFSSITNGPIFLRLYFYPTSYEHIETFNARFTVKVGTNLTLLKDFNPSLWLSNDNKTVTKEYCIQITPNEKLNITFIPKYTNTNQLNGLAFINEIEIVSMPSFLYYTDLNDTNYHSKTLGFDSNEYQILNNKAMETVYRVNVGENQVPPNHDTGMFRNWDNDFPRYLEKEYPLSVSSYFGHHLNFLNNNIPNYTAPEAVYLTARSYGMYATEDYNVTWNFEVDSSFTYMVRLHFCEFEMTIRNQGDGVFQIFIANILAEEKADVIRWSGAHMVPVHRDYVVPMYSEEGSSQIERVNLSIKLQRAPEATYTVYRDVLLNGIEIFKISDKTNLAGLSRRFHNAMADNSSKTKKIELLSLPPHLCRYFTIAEIRAATNNFDDDFIIGVGGFGNVYKGCVDGSTLVAIKRLKSGSQQGANEFINEIELLSQLRHIHLVSLVGYCNDDTEMILVYEFMQHDTLCEYLYGSNNQPLSWKQRLEILLGAARGLNYLHTEVKQKIIHRDVKSTNILLDDKWVAKVSDFGLSKVGPTGISTTHVSTMVNGSLGYLDPEYYMLQRLTLKSDVYSFGVVLLEVLCARPPLVRDLDKNTASLVCWFKKCYDSITGECLKYYCKLAFSCLHDDGTQRPSMSQVVGGLEFALQLVVSEEDSQYGMTQKDRTYMSDECSDLHFTRSHTYKESTVSARLGTQEQPFSGIGNQRTRSYSCQNFKMYI*