AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1016020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1016020 MtrunA17_Chr7g0228411 67.442 430 30 5 1 321 1 429 0.0 541
Msa1016020 MtrunA17_Chr8g0337571 46.615 384 123 8 16 321 8 387 7.49e-101 301
Msa1016020 MtrunA17_Chr8g0337581 43.342 383 136 6 17 321 9 388 3.77e-98 295
Msa1016020 MtrunA17_Chr8g0337511 56.723 238 49 3 138 321 5 242 2.73e-81 246
Msa1016020 MtrunA17_Chr8g0336481 53.846 221 73 3 80 272 14 233 5.19e-74 229
Msa1016020 MtrunA17_Chr8g0337521 43.866 269 107 3 17 243 9 275 1.73e-70 221
Msa1016020 MtrunA17_Chr4g0043661 35.369 393 168 9 12 321 4 393 2.00e-66 213
Msa1016020 MtrunA17_Chr5g0418411 39.432 317 130 7 13 272 4 315 5.03e-66 213
Msa1016020 MtrunA17_Chr3g0121891 38.348 339 141 8 48 321 59 394 2.69e-64 208
Msa1016020 MtrunA17_Chr8g0337601 47.059 238 72 3 138 321 2 239 8.37e-62 196
Msa1016020 MtrunA17_Chr3g0121881 36.391 338 147 7 49 321 64 398 3.14e-58 192
Msa1016020 MtrunA17_Chr4g0018151 35.678 398 161 9 12 321 49 439 2.55e-56 188
Msa1016020 MtrunA17_Chr3g0100091 38.538 301 121 8 82 321 48 345 8.27e-53 177
Msa1016020 MtrunA17_Chr2g0332971 31.977 344 160 5 50 321 60 401 6.53e-50 171
Msa1016020 MtrunA17_Chr2g0332801 37.413 286 138 8 50 297 90 372 2.26e-49 170
Msa1016020 MtrunA17_Chr1g0150291 35.202 321 143 8 53 310 79 397 5.90e-49 168
Msa1016020 MtrunA17_Chr1g0150301 35.398 339 153 9 47 321 55 391 2.52e-48 166
Msa1016020 MtrunA17_Chr7g0257701 37.687 268 129 8 50 286 131 391 2.60e-48 166
Msa1016020 MtrunA17_Chr4g0020771 34.962 266 131 5 54 280 106 368 2.13e-47 165
Msa1016020 MtrunA17_Chr1g0173451 31.962 316 160 7 17 280 50 362 1.75e-44 157
Msa1016020 MtrunA17_Chr3g0089021 38.258 264 122 6 54 280 104 363 6.83e-41 147
Msa1016020 MtrunA17_Chr6g0449961 30.075 399 175 13 16 321 19 406 3.90e-40 145
Msa1016020 MtrunA17_Chr1g0194231 30.571 350 161 9 51 321 114 460 4.19e-40 146
Msa1016020 MtrunA17_Chr2g0303941 35.433 254 126 8 52 272 61 309 9.42e-40 144
Msa1016020 MtrunA17_Chr5g0413141 28.319 339 170 8 37 307 55 388 3.30e-39 143
Msa1016020 MtrunA17_Chr4g0052621 28.818 347 165 9 54 321 99 442 5.10e-39 143
Msa1016020 MtrunA17_Chr2g0293681 31.529 314 165 9 54 321 101 410 1.13e-38 141
Msa1016020 MtrunA17_Chr8g0365901 29.446 343 163 9 52 321 97 433 2.74e-38 141
Msa1016020 MtrunA17_Chr1g0149241 31.773 299 159 7 49 310 59 349 1.27e-37 137
Msa1016020 MtrunA17_Chr6g0461181 44.865 185 71 4 167 321 250 433 4.43e-37 137
Msa1016020 MtrunA17_Chr7g0270361 29.480 346 163 10 54 321 103 445 6.90e-37 137
Msa1016020 MtrunA17_Chr8g0337551 49.231 130 40 1 140 243 7 136 8.21e-36 126
Msa1016020 MtrunA17_Chr2g0307831 33.333 264 126 8 52 272 56 312 9.88e-36 133
Msa1016020 MtrunA17_Chr2g0307821 33.333 264 126 8 52 272 56 312 9.88e-36 133
Msa1016020 MtrunA17_Chr2g0307811 31.731 312 156 9 12 272 7 312 9.10e-35 130
Msa1016020 MtrunA17_Chr5g0413411 29.630 351 160 7 37 303 117 464 1.37e-34 132
Msa1016020 MtrunA17_Chr1g0195221 32.308 260 137 6 52 275 69 325 9.22e-34 128
Msa1016020 MtrunA17_Chr4g0043431 32.576 264 140 7 52 281 68 327 1.12e-33 127
Msa1016020 MtrunA17_Chr7g0257721 33.906 233 113 6 48 243 104 332 1.24e-33 126
Msa1016020 MtrunA17_Chr5g0447901 32.453 265 135 9 47 272 51 310 8.44e-33 124
Msa1016020 MtrunA17_Chr8g0365891 28.438 320 135 6 41 272 107 420 1.17e-32 126
Msa1016020 MtrunA17_Chr2g0295451 31.939 263 138 8 48 272 82 341 5.06e-32 122
Msa1016020 MtrunA17_Chr4g0067631 32.443 262 135 8 50 272 83 341 2.59e-31 121
Msa1016020 MtrunA17_Chr5g0425811 28.464 267 146 6 49 279 15 272 2.91e-31 118
Msa1016020 MtrunA17_Chr7g0230891 30.612 294 147 11 52 302 70 349 3.68e-30 118
Msa1016020 MtrunA17_Chr8g0337541 43.972 141 55 2 17 135 9 147 4.18e-30 112
Msa1016020 MtrunA17_Chr2g0291841 31.159 276 145 10 46 284 22 289 2.54e-28 112
Msa1016020 MtrunA17_Chr8g0348981 28.462 260 146 6 49 272 59 314 6.48e-28 112
Msa1016020 MtrunA17_Chr3g0093011 36.410 195 88 5 132 294 7 197 1.12e-27 108
Msa1016020 MtrunA17_Chr8g0337351 39.456 147 75 5 144 281 20 161 8.36e-25 98.6
Msa1016020 MtrunA17_Chr7g0273191 35.766 137 54 4 123 225 2 138 1.86e-18 80.9
Msa1016020 MtrunA17_Chr8g0337531 40.566 106 35 2 244 321 25 130 1.97e-15 72.0
Msa1016020 MtrunA17_Chr8g0373171 46.512 86 20 1 138 197 7 92 2.99e-15 71.2
Msa1016020 MtrunA17_Chr8g0337561 40.566 106 35 2 244 321 8 113 1.60e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1016020 AT3G15720.1 45.238 252 108 4 50 274 55 303 6.66e-60 198
Msa1016020 AT3G15720.3 45.238 252 108 4 50 274 54 302 6.72e-60 198
Msa1016020 AT3G15720.4 45.643 241 101 4 61 274 2 239 2.84e-58 192
Msa1016020 AT3G15720.2 44.444 252 107 5 50 274 54 299 5.28e-57 191
Msa1016020 AT5G17200.1 35.942 345 134 8 54 315 74 414 8.64e-55 184
Msa1016020 AT5G44840.1 32.682 358 151 9 40 310 23 377 6.72e-53 178
Msa1016020 AT4G35670.1 34.109 387 152 13 12 310 5 376 3.53e-51 174
Msa1016020 AT5G27530.1 32.824 393 153 11 6 310 28 397 1.31e-50 174
Msa1016020 AT3G57510.1 36.576 257 129 3 50 272 99 355 3.93e-50 172
Msa1016020 AT5G44830.1 33.750 320 139 7 53 310 10 318 5.54e-50 169
Msa1016020 AT2G41850.1 37.828 267 129 6 48 279 97 361 2.01e-48 168
Msa1016020 AT3G07970.1 35.417 288 143 7 50 296 101 386 2.54e-48 167
Msa1016020 AT4G32380.1 30.179 391 188 10 10 317 3 391 1.77e-46 163
Msa1016020 AT4G32370.1 35.395 291 142 8 26 272 34 322 7.52e-46 159
Msa1016020 AT1G80170.1 31.003 329 151 7 54 310 88 412 1.09e-44 158
Msa1016020 AT3G26610.1 28.894 398 188 11 1 307 1 394 5.31e-44 157
Msa1016020 AT5G14650.1 33.538 325 153 8 42 307 52 372 9.80e-44 155
Msa1016020 AT1G70500.1 30.702 342 160 10 52 321 99 435 1.26e-42 153
Msa1016020 AT1G80140.1 29.377 337 170 7 51 321 1 335 6.11e-41 145
Msa1016020 AT4G32380.2 30.056 356 193 10 10 317 3 350 5.47e-40 145
Msa1016020 AT4G35670.2 35.055 271 113 7 100 310 2 269 2.40e-39 140
Msa1016020 AT2G43890.1 31.529 314 151 10 14 272 6 310 3.67e-39 142
Msa1016020 AT2G43870.1 31.962 316 144 12 13 272 4 304 5.42e-39 142
Msa1016020 AT4G32375.1 33.818 275 117 6 100 312 13 284 1.92e-38 141
Msa1016020 AT2G43860.1 31.454 337 157 12 53 321 67 397 1.01e-37 139
Msa1016020 AT1G23460.2 29.360 344 162 9 52 321 75 411 6.03e-37 137
Msa1016020 AT1G23460.1 29.360 344 162 9 52 321 99 435 8.89e-37 137
Msa1016020 AT3G59850.1 32.677 254 133 8 53 272 57 306 1.45e-36 135
Msa1016020 AT3G59850.2 32.677 254 133 8 53 272 101 350 1.82e-36 136
Msa1016020 AT1G02460.1 29.060 351 165 9 52 321 124 471 2.77e-36 136
Msa1016020 AT1G56710.1 27.606 355 176 7 44 321 76 426 3.78e-36 135
Msa1016020 AT1G48100.1 27.954 347 168 9 54 321 114 457 5.46e-36 135
Msa1016020 AT4G01890.1 31.683 303 157 8 52 308 101 399 1.00e-35 134
Msa1016020 AT1G05660.1 29.553 291 143 9 38 272 25 309 2.02e-35 132
Msa1016020 AT1G05650.1 30.888 259 141 7 47 272 56 309 2.10e-35 132
Msa1016020 AT2G43880.2 34.043 282 139 11 47 292 59 329 3.48e-35 130
Msa1016020 AT2G43880.1 35.496 262 125 10 47 272 59 312 1.41e-34 130
Msa1016020 AT1G60590.1 29.179 329 138 7 41 280 123 445 2.07e-33 129
Msa1016020 AT1G80170.2 32.599 227 111 6 54 242 88 310 1.00e-32 124
Msa1016020 AT1G10640.1 27.987 318 144 5 38 272 116 431 5.20e-32 125
Msa1016020 AT5G48140.1 32.422 256 132 7 52 272 54 303 5.74e-32 123
Msa1016020 AT3G07840.1 32.812 256 133 6 52 272 53 304 1.16e-31 122
Msa1016020 AT4G18180.1 32.812 256 132 7 54 272 75 327 1.25e-31 122
Msa1016020 AT5G14650.2 32.157 255 117 5 42 242 52 304 4.06e-31 119
Msa1016020 AT1G02790.1 31.418 261 133 9 52 275 85 336 8.11e-31 120
Msa1016020 AT3G07830.1 29.921 254 138 7 54 272 56 304 1.68e-30 119
Msa1016020 AT3G07850.1 27.434 339 174 9 52 321 101 436 4.30e-30 119
Msa1016020 AT1G65570.1 30.385 260 144 7 47 272 59 315 4.50e-30 118
Msa1016020 AT3G14040.1 27.139 339 175 9 52 321 102 437 1.01e-29 118
Msa1016020 AT5G39910.1 26.254 339 176 9 10 292 4 324 1.03e-29 117
Msa1016020 AT3G07820.1 30.469 256 138 7 52 272 53 303 1.61e-29 116
Msa1016020 AT1G17150.1 32.042 284 144 10 29 272 43 317 4.83e-29 115
Msa1016020 AT1G78400.1 27.193 342 176 9 49 321 65 402 3.98e-27 110
Msa1016020 AT4G13760.1 27.599 279 162 8 30 272 42 316 1.03e-26 108
Msa1016020 AT2G15460.1 25.625 320 173 9 14 272 1 316 7.16e-26 106
Msa1016020 AT2G26620.1 27.957 279 161 9 30 272 42 316 8.31e-26 106
Msa1016020 AT2G33160.1 30.000 270 150 8 38 272 52 317 1.73e-25 107
Msa1016020 AT2G40310.1 27.857 280 160 8 30 272 42 316 4.59e-25 104
Msa1016020 AT2G15470.1 25.312 320 174 9 14 272 1 316 4.87e-25 104
Msa1016020 AT2G15450.1 25.938 320 172 10 14 272 1 316 4.92e-25 104
Msa1016020 AT1G43090.1 27.519 258 148 6 50 272 63 316 6.67e-25 104
Msa1016020 AT1G43080.1 27.132 258 149 6 50 272 63 316 7.53e-25 103
Msa1016020 AT1G43100.1 27.519 258 148 6 50 272 63 316 5.50e-24 102

Find 76 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCACCAATGCAACCATTTA+TGG 0.109889 7_1:+31302789 None:intergenic
ACTTAGCATTAGAGGGAAAA+TGG 0.230516 7_1:+31304279 None:intergenic
TTGTGAGATGGTTTATATAT+TGG 0.245784 7_1:+31303136 None:intergenic
ATCAAAACACTTAGCATTAG+AGG 0.260706 7_1:+31304271 None:intergenic
GATGATTGTATTGCCGTTAA+TGG 0.290426 7_1:-31302201 Msa1016020:CDS
AATTTGATCCAATATAATAT+TGG 0.293764 7_1:+31299148 None:intergenic
GGGTTGTTCCAATATTATAT+TGG 0.322448 7_1:-31299156 Msa1016020:CDS
AGGATAAGTCATATTGGATT+AGG 0.349348 7_1:-31303161 Msa1016020:CDS
AGCGAGAATAAAGACATTTC+CGG 0.358669 7_1:-31301781 Msa1016020:intron
TATATTTGTATGATTTGTTC+CGG 0.366834 7_1:+31304204 None:intergenic
GGAGCTCATATAGCCATAAA+TGG 0.374655 7_1:-31302802 Msa1016020:CDS
CAAAACTTGCTTTCGACCTT+CGG 0.381891 7_1:-31303058 Msa1016020:intron
ATAAACCATCTCACAATAGA+TGG 0.386609 7_1:-31303129 Msa1016020:CDS
TCCTTCAATGCTCCCTTAGC+AGG 0.398248 7_1:+31303180 None:intergenic
GTGGTCCAGGCCATGGAATA+AGG 0.404549 7_1:-31302143 Msa1016020:intron
CTTAGCATTAGAGGGAAAAT+GGG 0.412964 7_1:+31304280 None:intergenic
ATTAATATTGTTTCTTCTCA+AGG 0.418870 7_1:-31299128 Msa1016020:CDS
CATTGAAGGATAAGTCATAT+TGG 0.420043 7_1:-31303167 Msa1016020:CDS
TAATCAGTATTGGCAGTCTT+GGG 0.425562 7_1:-31301875 Msa1016020:intron
TGTAAGAAGGGGAAAGTAAC+CGG 0.432150 7_1:-31304223 Msa1016020:CDS
GGTGGATCAATTGATGGTTA+TGG 0.434950 7_1:-31303099 Msa1016020:CDS
ACCTGCTAAGGGAGCATTGA+AGG 0.437064 7_1:-31303181 Msa1016020:CDS
TTAATCAGTATTGGCAGTCT+TGG 0.437590 7_1:-31301876 Msa1016020:intron
TTCACATTGTCTATGTAAGA+AGG 0.448470 7_1:-31304236 Msa1016020:CDS
TTTATGGCTATATGAGCTCC+TGG 0.459542 7_1:+31302805 None:intergenic
CTCACAATAGATGGAGGAAT+AGG 0.460753 7_1:-31303120 Msa1016020:CDS
TTCCTCCATCTATTGTGAGA+TGG 0.474970 7_1:+31303124 None:intergenic
GAAAATAGTTGCACCTGCTA+AGG 0.479526 7_1:-31303193 Msa1016020:CDS
GATATTATATTGCAGCTGGA+TGG 0.486637 7_1:-31303216 Msa1016020:intron
GGAATAGGTGGATCAATTGA+TGG 0.491811 7_1:-31303105 Msa1016020:CDS
TTAATATTGTTTCTTCTCAA+GGG 0.497779 7_1:-31299127 Msa1016020:CDS
CAGTGAGATCATTGGAGGAA+TGG 0.498091 7_1:+31302854 None:intergenic
ACTCGTGTTGCATGTGGTCC+AGG 0.501747 7_1:-31302156 Msa1016020:CDS
AATAACCTTATTCCATGGCC+TGG 0.505197 7_1:+31302138 None:intergenic
TTGTTTCAACACAAAACCCT+TGG 0.507450 7_1:+31299047 None:intergenic
GTGAACAATTTAGTACTCAC+TGG 0.510951 7_1:-31303804 Msa1016020:CDS
GTAAGACGATCCTCCATTAA+CGG 0.511182 7_1:+31302188 None:intergenic
GTTACGAACAGTGAGATCAT+TGG 0.512874 7_1:+31302846 None:intergenic
TACAAATATATACAATGTGA+TGG 0.517141 7_1:-31304191 Msa1016020:CDS
TCAAGAGTACGGTGGTAGAA+TGG 0.517934 7_1:-31300225 Msa1016020:CDS
TACTTGTGGAGCAGGAGGTA+TGG 0.522525 7_1:-31303862 Msa1016020:intron
TAATTTACGCTACTATTCCA+AGG 0.522998 7_1:-31299064 Msa1016020:CDS
TCACATTGTCTATGTAAGAA+GGG 0.530622 7_1:-31304235 Msa1016020:CDS
TTGATGGTTATGGCTCTACT+TGG 0.530856 7_1:-31303089 Msa1016020:CDS
ATCTCACTGTTCGTAACTTG+AGG 0.531782 7_1:-31302840 Msa1016020:CDS
GTTGCATGTGGTCCAGGCCA+TGG 0.533295 7_1:-31302150 Msa1016020:CDS
ATATTATATTGCAGCTGGAT+GGG 0.537334 7_1:-31303215 Msa1016020:intron
ATAGCCATAAATGGTTGCAT+TGG 0.540018 7_1:-31302793 Msa1016020:CDS
AAAATAGTTGCACCTGCTAA+GGG 0.546677 7_1:-31303192 Msa1016020:CDS
ATGGTTATGGCTCTACTTGG+TGG 0.546886 7_1:-31303086 Msa1016020:CDS
AGTACTCACTGGTGGTTGCA+AGG 0.552813 7_1:-31303793 Msa1016020:CDS
CACATTGTCTATGTAAGAAG+GGG 0.553407 7_1:-31304234 Msa1016020:CDS
TTATGGCTATATGAGCTCCT+GGG 0.561907 7_1:+31302806 None:intergenic
CATTTACTAGTAAAATCTCC+TGG 0.566924 7_1:-31302757 Msa1016020:intron
ATAGAAATAACCTTATTCCA+TGG 0.575156 7_1:+31302133 None:intergenic
TAGTAGCGTAAATTATTCCA+TGG 0.578395 7_1:+31299072 None:intergenic
TCAAAACACTTAGCATTAGA+GGG 0.580941 7_1:+31304272 None:intergenic
GGTATAAATCTAAAGTGCAT+GGG 0.587965 7_1:-31299176 Msa1016020:intron
GGCAACAAGAATTTACATCA+AGG 0.591592 7_1:-31303772 Msa1016020:intron
ACAATAGATGGAGGAATAGG+TGG 0.594045 7_1:-31303117 Msa1016020:CDS
AATTTACGCTACTATTCCAA+GGG 0.594427 7_1:-31299063 Msa1016020:CDS
TAGAGGGAAAATGGGGCTAG+AGG 0.598804 7_1:+31304288 None:intergenic
ACGAACAGTGAGATCATTGG+AGG 0.604842 7_1:+31302849 None:intergenic
TATGGCTATATGAGCTCCTG+GGG 0.619190 7_1:+31302807 None:intergenic
ATAATCATAGATCAAGAGTA+CGG 0.622443 7_1:-31300236 Msa1016020:CDS
AGTATTGGCAGTCTTGGGAA+AGG 0.625263 7_1:-31301870 Msa1016020:CDS
GTACGGTGGTAGAATGGCAA+AGG 0.637474 7_1:-31300219 Msa1016020:intron
TATGCTACTCGTGTTGCATG+TGG 0.640977 7_1:-31302162 Msa1016020:CDS
TTGAGGATTACAAATACCCC+AGG 0.642251 7_1:-31302823 Msa1016020:CDS
AACCATCTCACAATAGATGG+AGG 0.646797 7_1:-31303126 Msa1016020:CDS
GATTGTATTGCCGTTAATGG+AGG 0.650816 7_1:-31302198 Msa1016020:CDS
ATATACAATGTGATGGAACA+TGG 0.651682 7_1:-31304184 Msa1016020:CDS
AACAATTTAGTACTCACTGG+TGG 0.665273 7_1:-31303801 Msa1016020:CDS
TTAGCATTAGAGGGAAAATG+GGG 0.674756 7_1:+31304281 None:intergenic
ATTGGAGGAATGGAAACACA+AGG 0.704197 7_1:+31302864 None:intergenic
ATCATAGATCAAGAGTACGG+TGG 0.719881 7_1:-31300233 Msa1016020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTATTTTCAATAAATG+AGG + chr7_1:31299672-31299691 None:intergenic 10.0%
!! AAAATCACATATTTAAAAAT+AGG + chr7_1:31299828-31299847 None:intergenic 10.0%
!!! TTTTTTAAGCAATTAAAATT+AGG - chr7_1:31299878-31299897 Msa1016020:intron 10.0%
!! AGTAACTAATATATTATATA+TGG - chr7_1:31301597-31301616 Msa1016020:intron 10.0%
!! TTTCAAATATACATAATAAA+TGG - chr7_1:31301798-31301817 Msa1016020:CDS 10.0%
!! TTAAGAAAATAAATAATAAG+TGG - chr7_1:31301827-31301846 Msa1016020:CDS 10.0%
!! AAATAAGAATAAGAAATAAA+AGG + chr7_1:31303395-31303414 None:intergenic 10.0%
!!! TTTAATAAAATTTTCGAGTT+TGG - chr7_1:31299292-31299311 Msa1016020:intron 15.0%
!!! TAATTTTTTTTGTCTAAACA+AGG + chr7_1:31299395-31299414 None:intergenic 15.0%
!!! AATATATTGAATTGATTTGT+AGG - chr7_1:31299446-31299465 Msa1016020:intron 15.0%
!!! TAAAATTAGGTATTTTATTG+TGG - chr7_1:31299891-31299910 Msa1016020:intron 15.0%
!!! ATTTTAGAAAAATTAGAGAA+GGG + chr7_1:31300062-31300081 None:intergenic 15.0%
!!! TATTTTAGAAAAATTAGAGA+AGG + chr7_1:31300063-31300082 None:intergenic 15.0%
!!! ATTTTTCTAAAATAATTCAG+AGG - chr7_1:31300069-31300088 Msa1016020:intron 15.0%
!! AAACAAAAATAGCTAAAAAA+AGG + chr7_1:31300331-31300350 None:intergenic 15.0%
!! ATTTAATGTATATTATATGC+AGG - chr7_1:31300737-31300756 Msa1016020:intron 15.0%
!! TTTAATGTATATTATATGCA+GGG - chr7_1:31300738-31300757 Msa1016020:intron 15.0%
!! ACTAATATATTATATATGGT+TGG - chr7_1:31301601-31301620 Msa1016020:intron 15.0%
!! AAAATAAAATGGAAAATAGT+TGG + chr7_1:31301774-31301793 None:intergenic 15.0%
!!! TTTTCTTTTTTCTTATTTGA+TGG - chr7_1:31302501-31302520 Msa1016020:intron 15.0%
!! TAGTAAAAAAAAACAACAAA+TGG + chr7_1:31303774-31303793 None:intergenic 15.0%
!! AATTTGATCCAATATAATAT+TGG + chr7_1:31304208-31304227 None:intergenic 15.0%
!!! TATATTTGTATGATTTGTTC+CGG + chr7_1:31299152-31299171 None:intergenic 20.0%
!! TACAAATATATACAATGTGA+TGG - chr7_1:31299162-31299181 Msa1016020:CDS 20.0%
!!! ACCTAGAAATAAATCATTTT+TGG - chr7_1:31299527-31299546 Msa1016020:intron 20.0%
!!! ACCAAAAATGATTTATTTCT+AGG + chr7_1:31299531-31299550 None:intergenic 20.0%
!!! TTATTTTCAATAAATGAGGA+TGG + chr7_1:31299668-31299687 None:intergenic 20.0%
!! CCTCTATTAATAAAACAAAA+GGG + chr7_1:31299923-31299942 None:intergenic 20.0%
!! TCCTCTATTAATAAAACAAA+AGG + chr7_1:31299924-31299943 None:intergenic 20.0%
!! TCGTAGAAAAATAAATAAAG+AGG - chr7_1:31299953-31299972 Msa1016020:intron 20.0%
!! GAATAACAAAAACTTAACAA+TGG + chr7_1:31300025-31300044 None:intergenic 20.0%
!! TTAATGTATATTATATGCAG+GGG - chr7_1:31300739-31300758 Msa1016020:intron 20.0%
!! ATGTCATACTCATAATTATA+TGG - chr7_1:31300849-31300868 Msa1016020:intron 20.0%
!!! TATATTTTAGACATGAACAT+AGG + chr7_1:31300884-31300903 None:intergenic 20.0%
!! ACATCTTTATAACTAAACTT+TGG - chr7_1:31300978-31300997 Msa1016020:intron 20.0%
!! CATCTTTATAACTAAACTTT+GGG - chr7_1:31300979-31300998 Msa1016020:intron 20.0%
!! ATAATCATATGTATGTGAAA+GGG - chr7_1:31301374-31301393 Msa1016020:intron 20.0%
!! AATTGTGAATTAATCAGTAT+TGG - chr7_1:31301468-31301487 Msa1016020:intron 20.0%
!!! GTAAAAAATTGTAGTTTTAC+TGG - chr7_1:31301537-31301556 Msa1016020:intron 20.0%
!! ATAATATATTAGTTACTCAC+CGG + chr7_1:31301594-31301613 None:intergenic 20.0%
!!! TTTTTTGAAAGGAAAATAGT+TGG + chr7_1:31301746-31301765 None:intergenic 20.0%
!!! AGTTGGTTTTTTTTTTTGAA+AGG + chr7_1:31301757-31301776 None:intergenic 20.0%
!! AAAAAAAAGTTCTTGCATTA+AGG + chr7_1:31301860-31301879 None:intergenic 20.0%
!! AAAAAAATTCCTAGCATATT+TGG + chr7_1:31301908-31301927 None:intergenic 20.0%
!! TTAAAACAAGTACTTTCAAA+CGG + chr7_1:31301979-31301998 None:intergenic 20.0%
!! GTCATAAATCATAATTGATA+TGG + chr7_1:31302253-31302272 None:intergenic 20.0%
!!! AATGATTGTCTTGTTAATAA+TGG + chr7_1:31302599-31302618 None:intergenic 20.0%
!!! TGTGTTTTTTAATAAGTGTT+TGG - chr7_1:31302832-31302851 Msa1016020:CDS 20.0%
!!! GTGTTTTTTAATAAGTGTTT+GGG - chr7_1:31302833-31302852 Msa1016020:CDS 20.0%
!!! AACTTTTTAAGTTAGATGTA+TGG - chr7_1:31302959-31302978 Msa1016020:intron 20.0%
!! TAAGAATAAGAAATAAAAGG+TGG + chr7_1:31303392-31303411 None:intergenic 20.0%
!!! TGTGTGTTTGTAATTTTATT+TGG - chr7_1:31303688-31303707 Msa1016020:intron 20.0%
!!! ATTAATATTGTTTCTTCTCA+AGG - chr7_1:31304225-31304244 Msa1016020:CDS 20.0%
!!! TTAATATTGTTTCTTCTCAA+GGG - chr7_1:31304226-31304245 Msa1016020:CDS 20.0%
!!! AATAAAATTTTCGAGTTTGG+CGG - chr7_1:31299295-31299314 Msa1016020:intron 25.0%
!! CATTTTTATTGCAAATCTCA+TGG + chr7_1:31299749-31299768 None:intergenic 25.0%
!!! CCCTTTTGTTTTATTAATAG+AGG - chr7_1:31299920-31299939 Msa1016020:intron 25.0%
!!! AATTAGAGAAGGGATTTTTT+TGG + chr7_1:31300052-31300071 None:intergenic 25.0%
! TTGTGAGATGGTTTATATAT+TGG + chr7_1:31300220-31300239 None:intergenic 25.0%
! ATCTTAAAGGTGAATAAGTA+AGG + chr7_1:31300786-31300805 None:intergenic 25.0%
!!! ATGACATGTGATTTTTAAGT+TGG + chr7_1:31300836-31300855 None:intergenic 25.0%
! ACATACAAAACAAGATTTGA+AGG + chr7_1:31301077-31301096 None:intergenic 25.0%
!! AAAGGTCTTTGTTTGTAAAA+AGG - chr7_1:31301128-31301147 Msa1016020:intron 25.0%
! ATAGAAATAACCTTATTCCA+TGG + chr7_1:31301223-31301242 None:intergenic 25.0%
!! ATGTATTCCATTCAGTTTTA+TGG - chr7_1:31301284-31301303 Msa1016020:intron 25.0%
! ATATGATCCATAAAACTGAA+TGG + chr7_1:31301294-31301313 None:intergenic 25.0%
! TATGCTAATAATAAGAGAAG+AGG - chr7_1:31301311-31301330 Msa1016020:intron 25.0%
! ATGCTAATAATAAGAGAAGA+GGG - chr7_1:31301312-31301331 Msa1016020:intron 25.0%
! TCACATACATATGATTATGA+AGG + chr7_1:31301372-31301391 None:intergenic 25.0%
! CATAATCATATGTATGTGAA+AGG - chr7_1:31301373-31301392 Msa1016020:intron 25.0%
! TAGTCATACTTAAAGATAGT+TGG + chr7_1:31301713-31301732 None:intergenic 25.0%
! TAATCTAATCCAAATATGCT+AGG - chr7_1:31301896-31301915 Msa1016020:intron 25.0%
! GTATTCTGTTATAGTAAATG+TGG + chr7_1:31301936-31301955 None:intergenic 25.0%
! TTCGTAAGTATACTTTCAAA+AGG + chr7_1:31302012-31302031 None:intergenic 25.0%
! GTGTTCTTCATTTAATCAAA+TGG + chr7_1:31302739-31302758 None:intergenic 25.0%
! TTATCATGCTCTTATAACAT+TGG - chr7_1:31302119-31302138 Msa1016020:intron 25.0%
! ATAACTCTTGTTAATGACTT+GGG + chr7_1:31302428-31302447 None:intergenic 25.0%
! CATTAACAAGAGTTATGTAA+TGG - chr7_1:31302432-31302451 Msa1016020:intron 25.0%
!! GATAGTGTTTCAATTTTTGT+AGG - chr7_1:31302478-31302497 Msa1016020:intron 25.0%
! CAAGACAATCATTATTAATG+AGG - chr7_1:31302606-31302625 Msa1016020:intron 25.0%
! GTGTTCTTCATTTAATCAAA+TGG - chr7_1:31302739-31302758 Msa1016020:intron 25.0%
! TAGATGTATGGATAAAATGT+AGG - chr7_1:31302971-31302990 Msa1016020:intron 25.0%
! ATAATCATAGATCAAGAGTA+CGG - chr7_1:31303117-31303136 Msa1016020:CDS 25.0%
! ACTTATTAGACCATTTACAA+TGG - chr7_1:31303232-31303251 Msa1016020:intron 25.0%
! GTTGAATGAAAAAAAACCAT+TGG + chr7_1:31303358-31303377 None:intergenic 25.0%
! AATAAGAAATAAAAGGTGGT+GGG + chr7_1:31303388-31303407 None:intergenic 25.0%
! TCCATGTTTAACATATCAAA+TGG - chr7_1:31303746-31303765 Msa1016020:intron 25.0%
!!! TTTTGACAAAAAGCTTTAAC+TGG + chr7_1:31304258-31304277 None:intergenic 25.0%
TCAAAACACTTAGCATTAGA+GGG + chr7_1:31299084-31299103 None:intergenic 30.0%
ATCAAAACACTTAGCATTAG+AGG + chr7_1:31299085-31299104 None:intergenic 30.0%
TTCACATTGTCTATGTAAGA+AGG - chr7_1:31299117-31299136 Msa1016020:CDS 30.0%
TCACATTGTCTATGTAAGAA+GGG - chr7_1:31299118-31299137 Msa1016020:CDS 30.0%
! ATATACAATGTGATGGAACA+TGG - chr7_1:31299169-31299188 Msa1016020:intron 30.0%
! TTTTGTCTAAACAAGGAGTA+AGG + chr7_1:31299388-31299407 None:intergenic 30.0%
!!! TGTTGTTTTGTTCACGATTT+TGG - chr7_1:31299798-31299817 Msa1016020:intron 30.0%
ATATTATATTGCAGCTGGAT+GGG - chr7_1:31300138-31300157 Msa1016020:intron 30.0%
CATTGAAGGATAAGTCATAT+TGG - chr7_1:31300186-31300205 Msa1016020:intron 30.0%
AGGATAAGTCATATTGGATT+AGG - chr7_1:31300192-31300211 Msa1016020:intron 30.0%
ATAAACCATCTCACAATAGA+TGG - chr7_1:31300224-31300243 Msa1016020:CDS 30.0%
AAAAGGAATAATCATACCGA+AGG + chr7_1:31300314-31300333 None:intergenic 30.0%
AGAAATCACATTCTAACACT+AGG - chr7_1:31300444-31300463 Msa1016020:intron 30.0%
CATTTACTAGTAAAATCTCC+TGG - chr7_1:31300596-31300615 Msa1016020:intron 30.0%
! AAGTTGGTTAAATAACCTAG+CGG + chr7_1:31300820-31300839 None:intergenic 30.0%
!! GAGTTGCTTTGTTTGTAAAA+AGG - chr7_1:31301110-31301129 Msa1016020:intron 30.0%
! AGTTTTACTGGATCTACAAA+TGG - chr7_1:31301549-31301568 Msa1016020:intron 30.0%
! TGAAAGTATACTTACGAACA+CGG - chr7_1:31302014-31302033 Msa1016020:intron 30.0%
TTAAAAACAACTTTCCCATG+TGG + chr7_1:31302762-31302781 None:intergenic 30.0%
CAGCAAGATAATTAGTATGA+TGG + chr7_1:31302347-31302366 None:intergenic 30.0%
TTGATGTTATCTTCAACTCT+TGG - chr7_1:31302379-31302398 Msa1016020:intron 30.0%
CATAACTCTTGTTAATGACT+TGG + chr7_1:31302429-31302448 None:intergenic 30.0%
! GAAACACTATCTTTCCTTTT+GGG + chr7_1:31302469-31302488 None:intergenic 30.0%
! TGAAACACTATCTTTCCTTT+TGG + chr7_1:31302470-31302489 None:intergenic 30.0%
! TTGTCTTGTTAATAATGGCA+AGG + chr7_1:31302594-31302613 None:intergenic 30.0%
TTATCATGCTCTTATAACAC+TGG + chr7_1:31302715-31302734 None:intergenic 30.0%
TCAAACATCAAATCTACACT+AGG + chr7_1:31302900-31302919 None:intergenic 30.0%
TTGATGTTTGACCTGTATAA+TGG - chr7_1:31302909-31302928 Msa1016020:intron 30.0%
TAGTTGTGATTCCATTATAC+AGG + chr7_1:31302923-31302942 None:intergenic 30.0%
TCTCGAAATTCTCTCATTTA+TGG - chr7_1:31303002-31303021 Msa1016020:intron 30.0%
!!! CGTTCTTGACATTTTTAAGT+TGG + chr7_1:31303095-31303114 None:intergenic 30.0%
ATGAAAAAAAACCATTGGAG+AGG + chr7_1:31303353-31303372 None:intergenic 30.0%
ATAAGAAATAAAAGGTGGTG+GGG + chr7_1:31303387-31303406 None:intergenic 30.0%
GAATAAGAAATAAAAGGTGG+TGG + chr7_1:31303389-31303408 None:intergenic 30.0%
TACAAACACACACAAAAGTT+TGG + chr7_1:31303680-31303699 None:intergenic 30.0%
GCCATTTGATATGTTAAACA+TGG + chr7_1:31303750-31303769 None:intergenic 30.0%
!! TTTTTGTTTGCCATGTGAAA+TGG - chr7_1:31303799-31303818 Msa1016020:CDS 30.0%
TCACATTCCGTCAATTTAAA+GGG - chr7_1:31304136-31304155 Msa1016020:intron 30.0%
! GGTATAAATCTAAAGTGCAT+GGG - chr7_1:31304177-31304196 Msa1016020:intron 30.0%
GGGTTGTTCCAATATTATAT+TGG - chr7_1:31304197-31304216 Msa1016020:CDS 30.0%
! GCTTTTTGTCAAAATTTCCA+TGG - chr7_1:31304264-31304283 Msa1016020:CDS 30.0%
TAGTAGCGTAAATTATTCCA+TGG + chr7_1:31304284-31304303 None:intergenic 30.0%
TAATTTACGCTACTATTCCA+AGG - chr7_1:31304289-31304308 Msa1016020:CDS 30.0%
AATTTACGCTACTATTCCAA+GGG - chr7_1:31304290-31304309 Msa1016020:CDS 30.0%
TTAGCATTAGAGGGAAAATG+GGG + chr7_1:31299075-31299094 None:intergenic 35.0%
CTTAGCATTAGAGGGAAAAT+GGG + chr7_1:31299076-31299095 None:intergenic 35.0%
ACTTAGCATTAGAGGGAAAA+TGG + chr7_1:31299077-31299096 None:intergenic 35.0%
CACATTGTCTATGTAAGAAG+GGG - chr7_1:31299119-31299138 Msa1016020:CDS 35.0%
! TGTAGGCATTTCTAAAAGCA+TGG - chr7_1:31299463-31299482 Msa1016020:intron 35.0%
GTGAACAATTTAGTACTCAC+TGG - chr7_1:31299549-31299568 Msa1016020:intron 35.0%
AACAATTTAGTACTCACTGG+TGG - chr7_1:31299552-31299571 Msa1016020:intron 35.0%
GGCAACAAGAATTTACATCA+AGG - chr7_1:31299581-31299600 Msa1016020:intron 35.0%
TTAGCTACGTTTGTATCTGA+AGG - chr7_1:31299622-31299641 Msa1016020:intron 35.0%
!!! GAGAAGGGATTTTTTTGGTT+TGG + chr7_1:31300047-31300066 None:intergenic 35.0%
GATATTATATTGCAGCTGGA+TGG - chr7_1:31300137-31300156 Msa1016020:intron 35.0%
AAAATAGTTGCACCTGCTAA+GGG - chr7_1:31300161-31300180 Msa1016020:intron 35.0%
CACTAGGAATTTCATGTTGA+TGG - chr7_1:31300460-31300479 Msa1016020:intron 35.0%
ATAGCCATAAATGGTTGCAT+TGG - chr7_1:31300560-31300579 Msa1016020:intron 35.0%
ATGTCAAACCCATCTGTATT+GGG + chr7_1:31300629-31300648 None:intergenic 35.0%
CTCTCACTCGAAAAATATCA+CGG - chr7_1:31300649-31300668 Msa1016020:intron 35.0%
TTGTTTACCTGTTGCAATGA+TGG + chr7_1:31300684-31300703 None:intergenic 35.0%
AATGCTCTGTTGAATTGCAT+GGG + chr7_1:31300720-31300739 None:intergenic 35.0%
AAATGCTCTGTTGAATTGCA+TGG + chr7_1:31300721-31300740 None:intergenic 35.0%
GGCAGAGAAATCTATCTTAA+AGG + chr7_1:31300799-31300818 None:intergenic 35.0%
GATGATTGTATTGCCGTTAA+TGG - chr7_1:31301152-31301171 Msa1016020:intron 35.0%
!! TTAATCAGTATTGGCAGTCT+TGG - chr7_1:31301477-31301496 Msa1016020:intron 35.0%
!! TAATCAGTATTGGCAGTCTT+GGG - chr7_1:31301478-31301497 Msa1016020:intron 35.0%
!! CTCTTTTGAAGAAGTTGAAG+AGG - chr7_1:31301509-31301528 Msa1016020:intron 35.0%
AGCGAGAATAAAGACATTTC+CGG - chr7_1:31301572-31301591 Msa1016020:intron 35.0%
!!! AAGGCTACTTTTTTACCACA+TGG - chr7_1:31302054-31302073 Msa1016020:intron 35.0%
!!! AGGCTACTTTTTTACCACAT+GGG - chr7_1:31302055-31302074 Msa1016020:intron 35.0%
AAGGGGAAGATGAAAATAGT+GGG + chr7_1:31302197-31302216 None:intergenic 35.0%
AAAGGGGAAGATGAAAATAG+TGG + chr7_1:31302198-31302217 None:intergenic 35.0%
AAAACACGAAGAACTGGAAA+GGG + chr7_1:31302215-31302234 None:intergenic 35.0%
! GTATGATGGAATGCACAAAT+TGG + chr7_1:31302333-31302352 None:intergenic 35.0%
! ATGAGGCGTTTGAAAATTGT+TGG - chr7_1:31302623-31302642 Msa1016020:intron 35.0%
! TGAGGCGTTTGAAAATTGTT+GGG - chr7_1:31302624-31302643 Msa1016020:intron 35.0%
GGTTAAAAACAACTTTCCCA+TGG - chr7_1:31302760-31302779 Msa1016020:CDS 35.0%
TAAAAACAACTTTCCCATGG+TGG - chr7_1:31302763-31302782 Msa1016020:CDS 35.0%
AAAAACAACTTTCCCATGGT+GGG - chr7_1:31302764-31302783 Msa1016020:CDS 35.0%
AAAAACACACATGTGTTCGT+AGG + chr7_1:31302821-31302840 None:intergenic 35.0%
! TCTACCATCCAATCTTTTGT+AGG - chr7_1:31303029-31303048 Msa1016020:intron 35.0%
! CTACCATCCAATCTTTTGTA+GGG - chr7_1:31303030-31303049 Msa1016020:intron 35.0%
!! ATGTTGGTGACCATTGTAAA+TGG + chr7_1:31303245-31303264 None:intergenic 35.0%
!! TGTTGAAGGGTGTTTAATGT+TGG + chr7_1:31303261-31303280 None:intergenic 35.0%
!! TTGAAAAAGTGGGTGTTGAA+GGG + chr7_1:31303274-31303293 None:intergenic 35.0%
!! ATTGAAAAAGTGGGTGTTGA+AGG + chr7_1:31303275-31303294 None:intergenic 35.0%
GTGTTGGGAATTGAAAAAGT+GGG + chr7_1:31303284-31303303 None:intergenic 35.0%
! AGTGTTGGGAATTGAAAAAG+TGG + chr7_1:31303285-31303304 None:intergenic 35.0%
TTAAGAGAGAGAAGATGATG+TGG + chr7_1:31303308-31303327 None:intergenic 35.0%
TTCAACTTTAACCTCTCCAA+TGG - chr7_1:31303339-31303358 Msa1016020:intron 35.0%
! TTTTTGCATGCCATGTGAAA+TGG - chr7_1:31303850-31303869 Msa1016020:CDS 35.0%
! TTTTTGCATGCCATGTGAAA+TGG - chr7_1:31303850-31303869 Msa1016020:CDS 35.0%
! GCTTTTGCTTGTTTAATGTC+AGG - chr7_1:31304060-31304079 Msa1016020:intron 35.0%
GTCACATTCCGTCAATTTAA+AGG - chr7_1:31304135-31304154 Msa1016020:intron 35.0%
CAGAAGTCCCTTTAAATTGA+CGG + chr7_1:31304146-31304165 None:intergenic 35.0%
! CGGTATAAATCTAAAGTGCA+TGG - chr7_1:31304176-31304195 Msa1016020:intron 35.0%
TGTAAGAAGGGGAAAGTAAC+CGG - chr7_1:31299130-31299149 Msa1016020:CDS 40.0%
AAAGCATGGAGTAGTACTTG+TGG - chr7_1:31299477-31299496 Msa1016020:intron 40.0%
GCACGATATTATATTGCAGC+TGG - chr7_1:31300133-31300152 Msa1016020:intron 40.0%
GAAAATAGTTGCACCTGCTA+AGG - chr7_1:31300160-31300179 Msa1016020:intron 40.0%
AACCATCTCACAATAGATGG+AGG - chr7_1:31300227-31300246 Msa1016020:CDS 40.0%
TTCCTCCATCTATTGTGAGA+TGG + chr7_1:31300232-31300251 None:intergenic 40.0%
CTCACAATAGATGGAGGAAT+AGG - chr7_1:31300233-31300252 Msa1016020:CDS 40.0%
ACAATAGATGGAGGAATAGG+TGG - chr7_1:31300236-31300255 Msa1016020:CDS 40.0%
GGAATAGGTGGATCAATTGA+TGG - chr7_1:31300248-31300267 Msa1016020:CDS 40.0%
! GGTGGATCAATTGATGGTTA+TGG - chr7_1:31300254-31300273 Msa1016020:CDS 40.0%
! TTGATGGTTATGGCTCTACT+TGG - chr7_1:31300264-31300283 Msa1016020:CDS 40.0%
! CAAAACTTGCTTTCGACCTT+CGG - chr7_1:31300295-31300314 Msa1016020:CDS 40.0%
ATTGGAGGAATGGAAACACA+AGG + chr7_1:31300492-31300511 None:intergenic 40.0%
GTTACGAACAGTGAGATCAT+TGG + chr7_1:31300510-31300529 None:intergenic 40.0%
ATCTCACTGTTCGTAACTTG+AGG - chr7_1:31300513-31300532 Msa1016020:intron 40.0%
TTGAGGATTACAAATACCCC+AGG - chr7_1:31300530-31300549 Msa1016020:intron 40.0%
TTATGGCTATATGAGCTCCT+GGG + chr7_1:31300550-31300569 None:intergenic 40.0%
TTTATGGCTATATGAGCTCC+TGG + chr7_1:31300551-31300570 None:intergenic 40.0%
GGAGCTCATATAGCCATAAA+TGG - chr7_1:31300551-31300570 Msa1016020:intron 40.0%
TGCACCAATGCAACCATTTA+TGG + chr7_1:31300567-31300586 None:intergenic 40.0%
GTAATAGCCCCAATACAGAT+GGG - chr7_1:31300618-31300637 Msa1016020:intron 40.0%
TGTCAAACCCATCTGTATTG+GGG + chr7_1:31300628-31300647 None:intergenic 40.0%
GATGTCAAACCCATCTGTAT+TGG + chr7_1:31300630-31300649 None:intergenic 40.0%
GTAGATTCCATCATTGCAAC+AGG - chr7_1:31300674-31300693 Msa1016020:intron 40.0%
TGTATATTATATGCAGGGGC+CGG - chr7_1:31300743-31300762 Msa1016020:intron 40.0%
GTGAATAAGTAAGGTGTGTG+GGG + chr7_1:31300777-31300796 None:intergenic 40.0%
GGTGAATAAGTAAGGTGTGT+GGG + chr7_1:31300778-31300797 None:intergenic 40.0%
AGGTGAATAAGTAAGGTGTG+TGG + chr7_1:31300779-31300798 None:intergenic 40.0%
GATTGTATTGCCGTTAATGG+AGG - chr7_1:31301155-31301174 Msa1016020:intron 40.0%
GTAAGACGATCCTCCATTAA+CGG + chr7_1:31301168-31301187 None:intergenic 40.0%
AATAACCTTATTCCATGGCC+TGG + chr7_1:31301218-31301237 None:intergenic 40.0%
AAGTATACTTACGAACACGG+TGG - chr7_1:31302017-31302036 Msa1016020:intron 40.0%
AGTATACTTACGAACACGGT+GGG - chr7_1:31302018-31302037 Msa1016020:intron 40.0%
GTAAAAAAGTAGCCTTTCCC+AGG + chr7_1:31302050-31302069 None:intergenic 40.0%
AGTGGGTAAAAGAGACATGT+GGG + chr7_1:31302180-31302199 None:intergenic 40.0%
! TAGTGGGTAAAAGAGACATG+TGG + chr7_1:31302181-31302200 None:intergenic 40.0%
AAACACGAAGAACTGGAAAG+GGG + chr7_1:31302214-31302233 None:intergenic 40.0%
CAAAACACGAAGAACTGGAA+AGG + chr7_1:31302216-31302235 None:intergenic 40.0%
AGAGACAAAACACGAAGAAC+TGG + chr7_1:31302221-31302240 None:intergenic 40.0%
AAATGTGCAGAACTGAAACG+TGG - chr7_1:31302653-31302672 Msa1016020:intron 40.0%
AATGTGCAGAACTGAAACGT+GGG - chr7_1:31302654-31302673 Msa1016020:intron 40.0%
TGATCCACCCTACAAAAGAT+TGG + chr7_1:31303040-31303059 None:intergenic 40.0%
! AATCTTTTGTAGGGTGGATC+AGG - chr7_1:31303039-31303058 Msa1016020:intron 40.0%
! ATCATAGATCAAGAGTACGG+TGG - chr7_1:31303120-31303139 Msa1016020:CDS 40.0%
! AGAAGATGATGTGGAGTGTT+GGG + chr7_1:31303299-31303318 None:intergenic 40.0%
ATTATGCTCGCCATTTCACA+TGG + chr7_1:31303812-31303831 None:intergenic 40.0%
AACACCAATTAATCTGCCAC+AGG + chr7_1:31303975-31303994 None:intergenic 40.0%
AACTGTGTTGAATGAACTGC+TGG + chr7_1:31304022-31304041 None:intergenic 40.0%
!! AACAAGCAAAAGCACTGCAA+TGG + chr7_1:31304053-31304072 None:intergenic 40.0%
GATCCTAAGACTATGTGCAA+TGG + chr7_1:31304096-31304115 None:intergenic 40.0%
TGTCAACCTAGTTGGGATGT+CGG - chr7_1:31299342-31299361 Msa1016020:intron 45.0%
AAGGAGTAAGGACAGACATC+GGG + chr7_1:31299376-31299395 None:intergenic 45.0%
CAAGGAGTAAGGACAGACAT+CGG + chr7_1:31299377-31299396 None:intergenic 45.0%
! ATGGTTATGGCTCTACTTGG+TGG - chr7_1:31300267-31300286 Msa1016020:CDS 45.0%
!! GAATTTCATGTTGATGGCGC+AGG - chr7_1:31300466-31300485 Msa1016020:intron 45.0%
CAGTGAGATCATTGGAGGAA+TGG + chr7_1:31300502-31300521 None:intergenic 45.0%
ACGAACAGTGAGATCATTGG+AGG + chr7_1:31300507-31300526 None:intergenic 45.0%
TATGGCTATATGAGCTCCTG+GGG + chr7_1:31300549-31300568 None:intergenic 45.0%
TCTGTATTGGGGCTATTACC+AGG + chr7_1:31300617-31300636 None:intergenic 45.0%
GGTAATAGCCCCAATACAGA+TGG - chr7_1:31300617-31300636 Msa1016020:intron 45.0%
GTATATTATATGCAGGGGCC+GGG - chr7_1:31300744-31300763 Msa1016020:intron 45.0%
TATATTATATGCAGGGGCCG+GGG - chr7_1:31300745-31300764 Msa1016020:intron 45.0%
AGATAGATTTCTCTGCCGCT+AGG - chr7_1:31300802-31300821 Msa1016020:intron 45.0%
TATGCTACTCGTGTTGCATG+TGG - chr7_1:31301191-31301210 Msa1016020:intron 45.0%
!! AGTATTGGCAGTCTTGGGAA+AGG - chr7_1:31301483-31301502 Msa1016020:intron 45.0%
TGTGGGAGAGAGAATGGTTT+GGG + chr7_1:31302163-31302182 None:intergenic 45.0%
ATGTGGGAGAGAGAATGGTT+TGG + chr7_1:31302164-31302183 None:intergenic 45.0%
! TGGCTTGCAAGAAACCCAAA+AGG - chr7_1:31302452-31302471 Msa1016020:intron 45.0%
!!! GGCTACTTTTTTCCCACCAT+GGG + chr7_1:31302779-31302798 None:intergenic 45.0%
!!! AGGCTACTTTTTTCCCACCA+TGG + chr7_1:31302780-31302799 None:intergenic 45.0%
GGAAAAAAGTAGCCTTTCCC+AGG - chr7_1:31302785-31302804 Msa1016020:CDS 45.0%
TCGTAGGTGGAATTTAGCCT+GGG + chr7_1:31302805-31302824 None:intergenic 45.0%
TTCGTAGGTGGAATTTAGCC+TGG + chr7_1:31302806-31302825 None:intergenic 45.0%
AACACACATGTGTTCGTAGG+TGG + chr7_1:31302818-31302837 None:intergenic 45.0%
CCACCCTACAAAAGATTGGA+TGG + chr7_1:31303036-31303055 None:intergenic 45.0%
! CCATCCAATCTTTTGTAGGG+TGG - chr7_1:31303033-31303052 Msa1016020:intron 45.0%
! TCAAGAGTACGGTGGTAGAA+TGG - chr7_1:31303128-31303147 Msa1016020:CDS 45.0%
GAGAAGATGATGTGGAGTGT+TGG + chr7_1:31303300-31303319 None:intergenic 45.0%
GCATCCTGTGGCAGATTAAT+TGG - chr7_1:31303968-31303987 Msa1016020:intron 45.0%
TGGACGAGAGAGAGGATTAA+CGG + chr7_1:31304002-31304021 None:intergenic 45.0%
GCACCATTGCACATAGTCTT+AGG - chr7_1:31304090-31304109 Msa1016020:intron 45.0%
!! AATATAGATATTAAATTAAA+AGG + chr7_1:31299253-31299272 None:intergenic 5.0%
!!! TAATATTTAATTGTTTTAAA+TGG + chr7_1:31300095-31300114 None:intergenic 5.0%
!!! TTTTATTTTATTTTTTGTTA+GGG + chr7_1:31301049-31301068 None:intergenic 5.0%
!!! ATTTTATTTTATTTTTTGTT+AGG + chr7_1:31301050-31301069 None:intergenic 5.0%
!!! TATAAATATTTTTTTAAAGT+AGG - chr7_1:31301643-31301662 Msa1016020:intron 5.0%
!!! TTTGAAATTAAAAAATAAAA+TGG + chr7_1:31301785-31301804 None:intergenic 5.0%
!! AATTAAAAAAAAAAACAAAT+AGG + chr7_1:31303883-31303902 None:intergenic 5.0%
TAGAGGGAAAATGGGGCTAG+AGG + chr7_1:31299068-31299087 None:intergenic 50.0%
TGATGGAACATGGTGCTCGT+GGG - chr7_1:31299179-31299198 Msa1016020:intron 50.0%
TCGAGTTTGGCGGCATAAGA+CGG - chr7_1:31299305-31299324 Msa1016020:intron 50.0%
! CATAAGACGGAGGTTTTCCC+AGG - chr7_1:31299318-31299337 Msa1016020:intron 50.0%
TCCCAGGATGTCAACCTAGT+TGG - chr7_1:31299334-31299353 Msa1016020:intron 50.0%
! CCCAACTAGGTTGACATCCT+GGG + chr7_1:31299338-31299357 None:intergenic 50.0%
CCCAGGATGTCAACCTAGTT+GGG - chr7_1:31299335-31299354 Msa1016020:intron 50.0%
! TCCCAACTAGGTTGACATCC+TGG + chr7_1:31299339-31299358 None:intergenic 50.0%
GAAACACCGACATCCCAACT+AGG + chr7_1:31299351-31299370 None:intergenic 50.0%
TGGAGTAGTACTTGTGGAGC+AGG - chr7_1:31299483-31299502 Msa1016020:intron 50.0%
AGTAGTACTTGTGGAGCAGG+AGG - chr7_1:31299486-31299505 Msa1016020:intron 50.0%
TACTTGTGGAGCAGGAGGTA+TGG - chr7_1:31299491-31299510 Msa1016020:intron 50.0%
AGTACTCACTGGTGGTTGCA+AGG - chr7_1:31299560-31299579 Msa1016020:intron 50.0%
!! ACCTGCTAAGGGAGCATTGA+AGG - chr7_1:31300172-31300191 Msa1016020:intron 50.0%
TCCTTCAATGCTCCCTTAGC+AGG + chr7_1:31300176-31300195 None:intergenic 50.0%
AACACGGTGGGATTTAGCCT+GGG - chr7_1:31302030-31302049 Msa1016020:intron 50.0%
GAGACATGTGGGAGAGAGAA+TGG + chr7_1:31302169-31302188 None:intergenic 50.0%
CTGAAACGTGGGAGAGAGAA+TGG - chr7_1:31302665-31302684 Msa1016020:intron 50.0%
AACGTGGGAGAGAGAATGGT+TGG - chr7_1:31302669-31302688 Msa1016020:intron 50.0%
ACGTGGGAGAGAGAATGGTT+GGG - chr7_1:31302670-31302689 Msa1016020:intron 50.0%
GGTGGAATTTAGCCTGGGAA+AGG + chr7_1:31302800-31302819 None:intergenic 50.0%
GTACGGTGGTAGAATGGCAA+AGG - chr7_1:31303134-31303153 Msa1016020:CDS 50.0%
AGGATGCTCGCCATTTCACA+TGG + chr7_1:31303863-31303882 None:intergenic 50.0%
AGGATGCTCGCCATTTCACA+TGG + chr7_1:31303863-31303882 None:intergenic 50.0%
CGTGCAATTGGCGTGCAAAT+AGG + chr7_1:31303938-31303957 None:intergenic 50.0%
! GGGACTTCTGATAGCGACAT+CGG - chr7_1:31304156-31304175 Msa1016020:intron 50.0%
! GTGATGGAACATGGTGCTCG+TGG - chr7_1:31299178-31299197 Msa1016020:intron 55.0%
GATGGAACATGGTGCTCGTG+GGG - chr7_1:31299180-31299199 Msa1016020:intron 55.0%
AGTTTGGCGGCATAAGACGG+AGG - chr7_1:31299308-31299327 Msa1016020:intron 55.0%
GAGTAAGGACAGACATCGGG+AGG + chr7_1:31299373-31299392 None:intergenic 55.0%
ACTCGTGTTGCATGTGGTCC+AGG - chr7_1:31301197-31301216 Msa1016020:intron 55.0%
GTGGTCCAGGCCATGGAATA+AGG - chr7_1:31301210-31301229 Msa1016020:intron 55.0%
GAACACGGTGGGATTTAGCC+TGG - chr7_1:31302029-31302048 Msa1016020:intron 55.0%
GGTGGGATTTAGCCTGGGAA+AGG - chr7_1:31302035-31302054 Msa1016020:intron 55.0%
CGTGGGAGAGAGAATGGTTG+GGG - chr7_1:31302671-31302690 Msa1016020:intron 55.0%
TGAACTGCTGGACGAGAGAG+AGG + chr7_1:31304010-31304029 None:intergenic 55.0%
GAACATGGTGCTCGTGGGGA+TGG - chr7_1:31299184-31299203 Msa1016020:intron 60.0%
GGTGTGTGGGGTTTGAACCC+CGG + chr7_1:31300765-31300784 None:intergenic 60.0%
GTTGCATGTGGTCCAGGCCA+TGG - chr7_1:31301203-31301222 Msa1016020:intron 60.0%
ATCTGCCACAGGATGCCACG+TGG + chr7_1:31303964-31303983 None:intergenic 60.0%
TGCCACAGGATGCCACGTGG+CGG + chr7_1:31303961-31303980 None:intergenic 65.0%
GCCAATTGCACGCCGCCACG+TGG - chr7_1:31303946-31303965 Msa1016020:intron 70.0%
GCCACGTGGCGGCGTGCAAT+TGG + chr7_1:31303950-31303969 None:intergenic 70.0%
CGCCGCCACGTGGCATCCTG+TGG - chr7_1:31303956-31303975 Msa1016020:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 31299052 31304323 31299052 ID=Msa1016020;Name=Msa1016020
chr7_1 mRNA 31299052 31304323 31299052 ID=Msa1016020-mRNA-1;Parent=Msa1016020;Name=Msa1016020-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|1|0.71|0.62|8|0|321
chr7_1 exon 31304179 31304323 31304179 ID=Msa1016020-mRNA-1:exon:6244;Parent=Msa1016020-mRNA-1
chr7_1 exon 31303773 31303870 31303773 ID=Msa1016020-mRNA-1:exon:6243;Parent=Msa1016020-mRNA-1
chr7_1 exon 31303059 31303223 31303059 ID=Msa1016020-mRNA-1:exon:6242;Parent=Msa1016020-mRNA-1
chr7_1 exon 31302758 31302887 31302758 ID=Msa1016020-mRNA-1:exon:6241;Parent=Msa1016020-mRNA-1
chr7_1 exon 31302144 31302225 31302144 ID=Msa1016020-mRNA-1:exon:6240;Parent=Msa1016020-mRNA-1
chr7_1 exon 31301782 31301890 31301782 ID=Msa1016020-mRNA-1:exon:6239;Parent=Msa1016020-mRNA-1
chr7_1 exon 31300220 31300324 31300220 ID=Msa1016020-mRNA-1:exon:6238;Parent=Msa1016020-mRNA-1
chr7_1 exon 31299052 31299183 31299052 ID=Msa1016020-mRNA-1:exon:6237;Parent=Msa1016020-mRNA-1
chr7_1 CDS 31304179 31304323 31304179 ID=Msa1016020-mRNA-1:cds;Parent=Msa1016020-mRNA-1
chr7_1 CDS 31303773 31303870 31303773 ID=Msa1016020-mRNA-1:cds;Parent=Msa1016020-mRNA-1
chr7_1 CDS 31303059 31303223 31303059 ID=Msa1016020-mRNA-1:cds;Parent=Msa1016020-mRNA-1
chr7_1 CDS 31302758 31302887 31302758 ID=Msa1016020-mRNA-1:cds;Parent=Msa1016020-mRNA-1
chr7_1 CDS 31302144 31302225 31302144 ID=Msa1016020-mRNA-1:cds;Parent=Msa1016020-mRNA-1
chr7_1 CDS 31301782 31301890 31301782 ID=Msa1016020-mRNA-1:cds;Parent=Msa1016020-mRNA-1
chr7_1 CDS 31300220 31300324 31300220 ID=Msa1016020-mRNA-1:cds;Parent=Msa1016020-mRNA-1
chr7_1 CDS 31299052 31299183 31299052 ID=Msa1016020-mRNA-1:cds;Parent=Msa1016020-mRNA-1
Gene Sequence

>Msa1016020

ATGAAAACAAACTCCTCTAGCCCCATTTTCCCTCTAATGCTAAGTGTTTTGATTCTTTGTTTTGTTTCACATTGTCTATGTAAGAAGGGGAAAGTAACCGGAACAAATCATACAAATATATACAATGTGATGGAACATGGTGCTCGAGGTATGGCAACACTAGTTGTACCTAGAAATAAATCATTTTTGGTGAACAATTTAGTACTCACTGGTGGTTGCAAGGCAACAAGAATTTACATCAAGCTGGATGGGAAAATAGTTGCACCTGCTAAGGGAGCATTGAAGGATAAGTCATATTGGATTAGGATCCAATATATAAACCATCTCACAATAGATGGAGGAATAGGTGGATCAATTGATGGTTATGGCTCTACTTGGTGGCAATGCAAAACTTGCTTTCGACCTTCGGCCTTGTGTTTCCATTCCTCCAATGATCTCACTGTTCGTAACTTGAGGATTACAAATACCCCAGGAGCTCATATAGCCATAAATGGTTGCATTGGTGCAACATTCTCTCATTTACTAGTAAAATCTCCTGGTGATGATTGTATTGCCGTTAATGGAGGATCGTCTTACATCTATGCTACTCGTGTTGCATGTGGTCCAGGCCATGGAATAAGTATTGGCAGTCTTGGGAAAGGAAACTCTTTTGAAGAAGTTGAAGAGGTTCATGTAAAAAATTGTAGTTTTACTGGATCTACAAATGGAGCGAGAATAAAGACATTTCCGGGTGGATCAGGTTATGCAAGAAAGATTACTTTCGAGCAAATCCAACTTAAAAATGTCAAGAACGCGATAATCATAGATCAAGAGTACGGTGGTAGAATGGCAAAGTGCATGGGTTGTTCCAATATTATATTGGATCAAATTAATATTGTTTCTTCTCAAGGGAGAAATCCAGTTAAAGCTTTTTGTCAAAATTTCCATGGAATAATTTACGCTACTATTCCAAGGGTTTTGTGTTGA
Protein sequence

>Msa1016020

MKTNSSSPIFPLMLSVLILCFVSHCLCKKGKVTGTNHTNIYNVMEHGARGMATLVVPRNKSFLVNNLVLTGGCKATRIYIKLDGKIVAPAKGALKDKSYWIRIQYINHLTIDGGIGGSIDGYGSTWWQCKTCFRPSALCFHSSNDLTVRNLRITNTPGAHIAINGCIGATFSHLLVKSPGDDCIAVNGGSSYIYATRVACGPGHGISIGSLGKGNSFEEVEEVHVKNCSFTGSTNGARIKTFPGGSGYARKITFEQIQLKNVKNAIIIDQEYGGRMAKCMGCSNIILDQINIVSSQGRNPVKAFCQNFHGIIYATIPRVLC*