AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1017410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1017410 MtrunA17_Chr7g0233081 60.241 166 17 2 3 119 91 256 1.46e-58 181
Msa1017410 MtrunA17_Chr8g0369111 29.697 165 66 3 2 116 55 219 7.52e-19 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1017410 AT3G24110.1 34.591 159 52 2 10 116 65 223 1.90e-24 93.6
Msa1017410 AT3G24110.2 34.591 159 52 2 10 116 62 220 1.95e-24 93.2
Msa1017410 AT4G26470.1 31.677 161 62 3 3 115 56 216 1.86e-18 77.8
Msa1017410 AT4G26470.3 31.677 161 62 3 3 115 119 279 3.92e-18 77.8

Find 131 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCTTTGGTTTCATTAAA+TGG 0.102003 7_1:-36561076 Msa1017410:CDS
AATGCTAAGTTAGGTGATTT+TGG 0.156663 7_1:+36558813 Msa1017400:CDS
TTCATATTAGGCCTCAAATT+TGG 0.195069 7_1:-36559254 Msa1017410:three_prime_UTR
GTTTCAACCACAGGAAAATT+TGG 0.224206 7_1:-36559554 Msa1017410:three_prime_UTR
AGAACGGGCAAGTCACATTT+AGG 0.227822 7_1:-36561103 Msa1017410:CDS
TAGAATTGATCATTTCAAAT+TGG 0.234474 7_1:+36558920 Msa1017400:CDS
GAATGATGGCGGTGGATTTC+AGG 0.240928 7_1:+36560257 Msa1017400:CDS
CTCGCGTTTCGATGCCAATT+TGG 0.258646 7_1:-36560937 Msa1017410:three_prime_UTR
GCGGCTGATGTTTATAGTTT+TGG 0.260683 7_1:+36560208 Msa1017400:CDS
CGACGACAATTGTCATGTTT+TGG 0.274960 7_1:+36559682 Msa1017400:CDS
AAAGCTTCGACATCGGAATT+TGG 0.277319 7_1:+36559775 Msa1017400:CDS
TTTCAGTTCATGAGACTCTA+TGG 0.298588 7_1:+36562020 None:intergenic
CATATCTTGTTCAAGAATTA+CGG 0.303579 7_1:-36560038 Msa1017410:three_prime_UTR
CTCACAGATTTCTTCGTACT+TGG 0.313102 7_1:+36563341 None:intergenic
GATATTAAGAAGCTACAAAT+TGG 0.324155 7_1:-36560910 Msa1017410:three_prime_UTR
GAAAATCCCTTTGACTGATT+TGG 0.333913 7_1:-36560140 Msa1017410:three_prime_UTR
TCTCATTACAATGCTAAGTT+AGG 0.335548 7_1:+36558804 Msa1017400:CDS
ATTTGAGGCCTAATATGAAA+TGG 0.339195 7_1:+36559258 Msa1017400:CDS
ACATTTAGGGAATTCCTCTT+TGG 0.344597 7_1:-36561089 Msa1017410:CDS
TCTTAATATCACGGCCAAAT+TGG 0.345010 7_1:+36560923 None:intergenic
TAAGAAGTTACAGAAGAAAT+TGG 0.347295 7_1:+36560589 None:intergenic
CAGGTACCAGGAGGTTCTTT+TGG 0.350465 7_1:+36560276 Msa1017400:CDS
TCCACAACCCATTTCATATT+AGG 0.359149 7_1:-36559266 Msa1017410:three_prime_UTR
AGAATTGATCATTTCAAATT+GGG 0.362015 7_1:+36558921 Msa1017400:CDS
CAAATTGTGAGCATTCTTGA+TGG 0.362697 7_1:+36560457 Msa1017400:CDS
GATTATACCGATACTATGTT+TGG 0.378622 7_1:-36560981 Msa1017410:three_prime_UTR
AAATGTGATGTATTTAGCTT+TGG 0.384978 7_1:+36559020 Msa1017400:CDS
TCGCCGGAATATGTTGATTC+AGG 0.386310 7_1:+36560172 Msa1017400:CDS
CTTCACCTTCTGAAACTACT+AGG 0.386655 7_1:+36559363 Msa1017400:CDS
CGGAATTTGGTTCAGCTTCG+CGG 0.388446 7_1:+36559788 Msa1017400:CDS
TACCGATACTATGTTTGGTT+TGG 0.393816 7_1:-36560976 Msa1017410:three_prime_UTR
TTGATAAGGTTGGTTAGATT+AGG 0.398690 7_1:+36560388 Msa1017400:CDS
AAAGCTAAATACATCACATT+TGG 0.398745 7_1:-36559018 Msa1017410:three_prime_UTR
TTCTTTATCTACATGAAGAA+TGG 0.401430 7_1:+36559978 Msa1017400:CDS
TCTTTGTATGAAATTTCTCT+TGG 0.403736 7_1:-36559578 Msa1017410:three_prime_UTR
TCAAACGAACTCAGGAATCT+AGG 0.403843 7_1:+36559752 Msa1017400:CDS
GACTTTGGAACTGCTTATCA+TGG 0.405566 7_1:+36559653 Msa1017400:CDS
CTCATGCTTGGTCTTAATTG+AGG 0.406048 7_1:-36560433 Msa1017410:three_prime_UTR
ACAAGGAAAGTAGGGAAGAA+TGG 0.407050 7_1:+36560506 Msa1017400:CDS
TCGAGAATTGGCGGAACAAT+TGG 0.407592 7_1:+36558951 Msa1017400:CDS
CATTTGGAAGTTCCATTGCT+TGG 0.411052 7_1:-36559002 Msa1017410:three_prime_UTR
TCGCCTGAATCAACATATTC+CGG 0.415228 7_1:-36560175 Msa1017410:three_prime_UTR
TTGGTTTCATTAAATGGATC+GGG 0.420025 7_1:-36561070 Msa1017410:CDS
ATCAGAAGGCTTTGTGATGA+AGG 0.426717 7_1:+36559125 Msa1017400:CDS
GTTGTGCTTGAAATTGTATC+TGG 0.431832 7_1:+36559047 Msa1017400:CDS
ATATTCTCAATCTCATTCTC+TGG 0.438447 7_1:+36561967 None:intergenic
TTGGGAGAAACATCGAGAAT+TGG 0.439050 7_1:+36558939 Msa1017400:CDS
AGCTGTGCTAACTCTGCCTT+TGG 0.443363 7_1:+36561499 None:intergenic
TTTCAGTACTGTGATGTTGA+TGG 0.444679 7_1:-36561943 Msa1017410:CDS
AAGAAATTGGTATAATCAAA+TGG 0.445215 7_1:+36560602 None:intergenic
AAATGGACTGGGACAAGAAC+GGG 0.446740 7_1:-36561118 Msa1017410:CDS
ATATCAGCTAATTCCTTCAA+TGG 0.447182 7_1:-36560334 Msa1017410:three_prime_UTR
CACAAGCATCTCTCCTTGTT+CGG 0.449346 7_1:-36559819 Msa1017410:three_prime_UTR
AGGGTAGCAGAGCTTGACTT+TGG 0.453610 7_1:+36559638 Msa1017400:CDS
AGATATAACTAATGCACGTT+TGG 0.454115 7_1:+36560878 None:intergenic
TATGAACGACTATCAATGTT+TGG 0.454355 7_1:+36559904 Msa1017400:CDS
CTCACAATTTGTCTCATGCT+TGG 0.455592 7_1:-36560445 Msa1017410:three_prime_UTR
TTTGAGGCCTAATATGAAAT+GGG 0.460462 7_1:+36559259 Msa1017400:CDS
AGAGGATGAGATAGAAATGA+AGG 0.460740 7_1:-36559326 Msa1017410:three_prime_UTR
TGAGAAAGAATTGATAAGGT+TGG 0.466686 7_1:+36560378 Msa1017400:CDS
GGAATTTGGTTCAGCTTCGC+GGG 0.468261 7_1:+36559789 Msa1017400:CDS
GAACGGGCAAGTCACATTTA+GGG 0.469408 7_1:-36561102 Msa1017410:CDS
CTCTGCTACCCTTCTCGACT+CGG 0.469491 7_1:-36559627 Msa1017410:three_prime_UTR
TTTGGTTTCATTAAATGGAT+CGG 0.471121 7_1:-36561071 Msa1017410:CDS
ACATGAAGAACAAGGAAAGT+AGG 0.471136 7_1:+36560497 Msa1017400:CDS
TCAAACTATGTTACAGCTGC+AGG 0.474918 7_1:+36559452 Msa1017400:CDS
TCTTTATCTACATGAAGAAT+GGG 0.475178 7_1:+36559979 Msa1017400:CDS
TCCTCATAGGAGAAATGGAC+TGG 0.476979 7_1:-36561130 Msa1017410:intron
CACTTCATGATCCAAATTTG+AGG 0.481028 7_1:+36559243 Msa1017400:CDS
ATTTCACTATGTTGTACCTA+TGG 0.490835 7_1:-36559940 Msa1017410:three_prime_UTR
TTAGCTGATATAAGACTGAA+TGG 0.492869 7_1:+36560346 Msa1017400:CDS
CATGAAGAACAAGGAAAGTA+GGG 0.494716 7_1:+36560498 Msa1017400:CDS
AGAGCAAAACTACTAAGTCT+TGG 0.500336 7_1:-36560064 Msa1017410:three_prime_UTR
ATAATGAGAAAGAATTGATA+AGG 0.502828 7_1:+36560374 Msa1017400:CDS
GATACAAGGTTACAGAAAGA+TGG 0.509544 7_1:+36559167 Msa1017400:CDS
GTGGTGCTTGAAATTGTTAG+TGG 0.509959 7_1:+36560235 Msa1017400:CDS
GCTTGTGGTTTATGATTACT+CGG 0.509983 7_1:+36559835 Msa1017400:CDS
TTTGTAGCTTCTTAATATCA+CGG 0.512377 7_1:+36560914 None:intergenic
TCTCTTGGAGTTTCAACCAC+AGG 0.512645 7_1:-36559563 Msa1017410:three_prime_UTR
ATCTAGGAAAGCTTCGACAT+CGG 0.512780 7_1:+36559768 Msa1017400:CDS
TTCTAGAAGCAGCTGATACA+AGG 0.513177 7_1:+36559153 Msa1017400:CDS
TAGCACAAGTGGCACGATCT+CGG 0.515093 7_1:+36559391 Msa1017400:CDS
GAAGACAAAGATATATAAAG+AGG 0.515519 7_1:-36559344 Msa1017410:three_prime_UTR
GATAGAAATGAAGGAAGTGA+AGG 0.522596 7_1:-36559317 Msa1017410:three_prime_UTR
ATTCGCAGAATTCAAGCTCT+AGG 0.526877 7_1:+36560559 Msa1017400:CDS
GCCTAATATGAAATGGGTTG+TGG 0.527225 7_1:+36559265 Msa1017400:CDS
TGTACCTATGGTGCCATTCG+AGG 0.527493 7_1:-36559928 Msa1017410:three_prime_UTR
GATACTACCAAATCAGTCAA+AGG 0.537408 7_1:+36560133 Msa1017400:CDS
TGAAATTGTTAGTGGAATGA+TGG 0.539847 7_1:+36560243 Msa1017400:CDS
GGCGGTGGATTTCAGGTACC+AGG 0.542190 7_1:+36560264 Msa1017400:CDS
GAGAATCTATCGCGCAGCGC+AGG 0.544147 7_1:-36559731 Msa1017410:three_prime_UTR
TGGTCCTCGAATGGCACCAT+AGG 0.545768 7_1:+36559924 Msa1017400:CDS
ATACTACCAAATCAGTCAAA+GGG 0.546292 7_1:+36560134 Msa1017400:CDS
AAGGCAGAGTTAGCACAGCT+TGG 0.547247 7_1:-36561496 Msa1017410:CDS
TTCAAGAATTACGGCTGAAG+AGG 0.550399 7_1:-36560029 Msa1017410:three_prime_UTR
GTAACTTCTCCGAGTCGAGA+AGG 0.551458 7_1:+36559618 Msa1017400:CDS
ATCAATGTTTGGTCCTCGAA+TGG 0.558411 7_1:+36559915 Msa1017400:CDS
CCTCATAGGAGAAATGGACT+GGG 0.563151 7_1:-36561129 Msa1017410:intron
CGCCAAACCAAACATAGTAT+CGG 0.565055 7_1:+36560974 None:intergenic
ATAGATTCTCAAACGAACTC+AGG 0.566422 7_1:+36559744 Msa1017400:CDS
TCAGTGTCGGTTTGTTTCAG+CGG 0.573087 7_1:+36560853 None:intergenic
CAAACAAAGTAGATAGAACA+TGG 0.578579 7_1:-36560681 Msa1017410:three_prime_UTR
TGTTAGTGGAATGATGGCGG+TGG 0.578689 7_1:+36560249 Msa1017400:CDS
TCCATTTAATGAAACCAAAG+AGG 0.580838 7_1:+36561075 None:intergenic
TTGTTTGTTTCAGTCACCAA+AGG 0.589144 7_1:-36561515 Msa1017410:intron
CGAGAAAACACATTCAGTGT+CGG 0.591740 7_1:+36560840 None:intergenic
TAACTTCTCCGAGTCGAGAA+GGG 0.594218 7_1:+36559619 Msa1017400:CDS
GGAGAAACATCGAGAATTGG+CGG 0.596306 7_1:+36558942 Msa1017400:CDS
TAGTATCATTGACTACATGA+TGG 0.606004 7_1:-36560117 Msa1017410:three_prime_UTR
CTGTGATGTTGATGGAAGCA+AGG 0.607148 7_1:-36561935 Msa1017410:CDS
ATTTGGTTCAGCTTCGCGGG+TGG 0.607598 7_1:+36559792 Msa1017400:CDS
TCTTCACCAAAAGAACCTCC+TGG 0.608123 7_1:-36560282 Msa1017410:three_prime_UTR
ACTAGGACTAGTAGCACAAG+TGG 0.616209 7_1:+36559380 Msa1017400:CDS
CTAGTCCTAGTAGTTTCAGA+AGG 0.618043 7_1:-36559368 Msa1017410:three_prime_UTR
TGCTTGAAATTGTATCTGGA+AGG 0.621411 7_1:+36559051 Msa1017400:CDS
AAACTTACACAGTTTCCTTG+TGG 0.625288 7_1:-36560795 Msa1017410:three_prime_UTR
ACTATAAACATCAGCCGCCG+AGG 0.627716 7_1:-36560203 Msa1017410:three_prime_UTR
TGTGATGTTGATGGAAGCAA+GGG 0.639504 7_1:-36561934 Msa1017410:CDS
GAAATGGACTGGGACAAGAA+CGG 0.640299 7_1:-36561119 Msa1017410:CDS
TGATTCAGGCGAAGCCACCT+CGG 0.643090 7_1:+36560186 Msa1017400:CDS
CTTCAACAAATTCATAACAA+AGG 0.644923 7_1:+36559881 Msa1017400:CDS
ATAAACATCAGCCGCCGAGG+TGG 0.649167 7_1:-36560200 Msa1017410:three_prime_UTR
TTCTTGTCAAGAAATGAGCA+TGG 0.653627 7_1:+36560094 Msa1017400:CDS
TTCAGGCGAAGCCACCTCGG+CGG 0.677396 7_1:+36560189 Msa1017400:CDS
AAACATGACAATTGTCGTCG+AGG 0.679499 7_1:-36559679 Msa1017410:three_prime_UTR
TGAAGCGCTCTTATGATCTG+CGG 0.682991 7_1:+36561009 None:intergenic
ATTACTCAACATGAAGAACA+AGG 0.684860 7_1:+36560489 Msa1017400:CDS
CGAACAAGGAGAGATGCTTG+TGG 0.704565 7_1:+36559820 Msa1017400:CDS
AATTGTTAGTGGAATGATGG+CGG 0.705799 7_1:+36560246 Msa1017400:CDS
GGTGGATTTCAGGTACCAGG+AGG 0.708806 7_1:+36560267 Msa1017400:CDS
GTGATGTTGATGGAAGCAAG+GGG 0.817481 7_1:-36561933 Msa1017410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAATAATTTCATTTTGAAAA+CGG + chr7_1:36559392-36559411 Msa1017400:CDS 15.0%
!! GAAATAAGAAGAAATAAATT+TGG - chr7_1:36559616-36559635 Msa1017410:three_prime_UTR 15.0%
!!! TTGTAATTTTGATATTTTCA+AGG + chr7_1:36559818-36559837 Msa1017400:CDS 15.0%
!!! ACGTATTTTGTTAATAATTT+TGG - chr7_1:36559850-36559869 Msa1017410:three_prime_UTR 15.0%
!!! ATAAAATCATTTTGATTGAT+TGG + chr7_1:36562999-36563018 None:intergenic 15.0%
!! AAAAGATTAAACAAGAGAAA+AGG + chr7_1:36558808-36558827 Msa1017400:CDS 20.0%
!! ACAATATATATGATGTTTGT+TGG - chr7_1:36558951-36558970 Msa1017410:three_prime_UTR 20.0%
!!! TAGAGATTTTGAAAAGAAAA+GGG + chr7_1:36559250-36559269 Msa1017400:CDS 20.0%
!!! TTAGAGATTTTGAAAAGAAA+AGG + chr7_1:36559251-36559270 Msa1017400:CDS 20.0%
!! TTAGAGTAATAATCAAACAA+TGG + chr7_1:36559369-36559388 Msa1017400:CDS 20.0%
!!! ACTATCAATTGATTTCAATT+TGG + chr7_1:36559647-36559666 Msa1017400:CDS 20.0%
!! AATAAAGAATACATTATCAG+AGG + chr7_1:36560252-36560271 Msa1017400:CDS 20.0%
!! TAAAAAAAAATTGAACCGAT+CGG - chr7_1:36560379-36560398 Msa1017410:three_prime_UTR 20.0%
!!! TTTCTCTTTTTTGATCAAAA+TGG - chr7_1:36560653-36560672 Msa1017410:three_prime_UTR 20.0%
!!! ACCAAAAAGTGATATATTTT+CGG + chr7_1:36560827-36560846 None:intergenic 20.0%
!!! ATATGACTTAAATGTCTTTT+AGG + chr7_1:36560916-36560935 None:intergenic 20.0%
!! GACATTTAAGTCATATTAAA+AGG - chr7_1:36560920-36560939 Msa1017410:three_prime_UTR 20.0%
!! AAGAAATTGGTATAATCAAA+TGG + chr7_1:36561499-36561518 None:intergenic 20.0%
!! ATAATGAGAAAGAATTGATA+AGG + chr7_1:36561727-36561746 None:intergenic 20.0%
!!! ATCAAAATGATTTTATCATC+AGG - chr7_1:36563003-36563022 Msa1017410:intron 20.0%
!!! TCAAAATGATTTTATCATCA+GGG - chr7_1:36563004-36563023 Msa1017410:intron 20.0%
!! AGAATTGATCATTTCAAATT+GGG + chr7_1:36563180-36563199 None:intergenic 20.0%
!! TAGAATTGATCATTTCAAAT+TGG + chr7_1:36563181-36563200 None:intergenic 20.0%
!!! CTCTTGTTTAATCTTTTTTC+TGG - chr7_1:36558811-36558830 Msa1017410:three_prime_UTR 25.0%
!!! CAATTTTCTCTAGAAATTCT+CGG + chr7_1:36558924-36558943 Msa1017400:CDS 25.0%
! ATTGTAGTAAAGTAAGGTTA+AGG + chr7_1:36559045-36559064 Msa1017400:CDS 25.0%
! AACCTTACTTTACTACAATT+CGG - chr7_1:36559046-36559065 Msa1017410:three_prime_UTR 25.0%
! CAATATTTAAAAAACCGAAC+CGG + chr7_1:36559161-36559180 Msa1017400:CDS 25.0%
! TCTACTCAACATTTGATATA+GGG + chr7_1:36559334-36559353 Msa1017400:CDS 25.0%
!! ACAACTTTCAACATTGATTA+GGG + chr7_1:36559422-36559441 Msa1017400:CDS 25.0%
! GATAAAAATTCCTTGTAATG+AGG + chr7_1:36559480-36559499 Msa1017400:CDS 25.0%
! AAAATGAGTGTTTACTAAGA+AGG + chr7_1:36559761-36559780 Msa1017400:CDS 25.0%
!! TTCTTAGTAAACACTCATTT+TGG - chr7_1:36559760-36559779 Msa1017410:three_prime_UTR 25.0%
! ACATTTACGGACAAAAAATA+AGG - chr7_1:36559951-36559970 Msa1017410:three_prime_UTR 25.0%
! AATACATTATCAGAGGATAA+AGG + chr7_1:36560245-36560264 Msa1017400:CDS 25.0%
!! GATTTCTATGTTTTCAAAAC+TGG - chr7_1:36560277-36560296 Msa1017410:three_prime_UTR 25.0%
! TATAGAGTCATATGGTTTAA+GGG + chr7_1:36560553-36560572 Msa1017400:CDS 25.0%
! ATATAGAGTCATATGGTTTA+AGG + chr7_1:36560554-36560573 Msa1017400:CDS 25.0%
! AGTCATAATATAGAGTCATA+TGG + chr7_1:36560561-36560580 Msa1017400:CDS 25.0%
!!! TTTTTTGATCAAAATGGTGA+TGG - chr7_1:36560659-36560678 Msa1017410:three_prime_UTR 25.0%
!! TTTTTGATCAAAATGGTGAT+GGG - chr7_1:36560660-36560679 Msa1017410:three_prime_UTR 25.0%
! TGAAATGAACAATACTGAAT+CGG + chr7_1:36560766-36560785 None:intergenic 25.0%
!! CAAAAAGTGATATATTTTCG+GGG + chr7_1:36560825-36560844 None:intergenic 25.0%
!! CCAAAAAGTGATATATTTTC+GGG + chr7_1:36560826-36560845 None:intergenic 25.0%
!!! ACTTTTTATTTTGTACCAGA+AGG + chr7_1:36560877-36560896 None:intergenic 25.0%
! TTCTGGTACAAAATAAAAAG+TGG - chr7_1:36560876-36560895 Msa1017410:three_prime_UTR 25.0%
! TAAAAAGTGGTATATTTGCA+CGG - chr7_1:36560889-36560908 Msa1017410:three_prime_UTR 25.0%
!! TTTGGTTTCATTAAATGGAT+CGG - chr7_1:36561027-36561046 Msa1017410:three_prime_UTR 25.0%
! TTTGTAGCTTCTTAATATCA+CGG + chr7_1:36561187-36561206 None:intergenic 25.0%
! GATATTAAGAAGCTACAAAT+TGG - chr7_1:36561188-36561207 Msa1017410:intron 25.0%
! TAAGAAGTTACAGAAGAAAT+TGG + chr7_1:36561512-36561531 None:intergenic 25.0%
! CATATCTTGTTCAAGAATTA+CGG - chr7_1:36562060-36562079 Msa1017410:intron 25.0%
! TCTTTATCTACATGAAGAAT+GGG + chr7_1:36562122-36562141 None:intergenic 25.0%
! TTCTTTATCTACATGAAGAA+TGG + chr7_1:36562123-36562142 None:intergenic 25.0%
! CTTCAACAAATTCATAACAA+AGG + chr7_1:36562220-36562239 None:intergenic 25.0%
! TCTTTGTATGAAATTTCTCT+TGG - chr7_1:36562520-36562539 Msa1017410:intron 25.0%
! GAAGACAAAGATATATAAAG+AGG - chr7_1:36562754-36562773 Msa1017410:intron 25.0%
!! AAATGTGATGTATTTAGCTT+TGG + chr7_1:36563081-36563100 None:intergenic 25.0%
! AAAGCTAAATACATCACATT+TGG - chr7_1:36563080-36563099 Msa1017410:intron 25.0%
TGTGCATATTGGAGAATATT+TGG - chr7_1:36558846-36558865 Msa1017410:three_prime_UTR 30.0%
TGTTACCTGAATATGAAGTA+CGG - chr7_1:36558877-36558896 Msa1017410:three_prime_UTR 30.0%
ACCTTACTTTACTACAATTC+GGG - chr7_1:36559047-36559066 Msa1017410:three_prime_UTR 30.0%
!!! TTACTACAATTCGGGTTTTT+TGG - chr7_1:36559055-36559074 Msa1017410:three_prime_UTR 30.0%
! TGCTTTAAATCAAACGAATC+AGG + chr7_1:36559101-36559120 Msa1017400:CDS 30.0%
!!! CGGTTCGGTTTTTTAAATAT+TGG - chr7_1:36559159-36559178 Msa1017410:three_prime_UTR 30.0%
ACAATCGAGAATGAGTTTAA+GGG - chr7_1:36559182-36559201 Msa1017410:three_prime_UTR 30.0%
CTCTACTCAACATTTGATAT+AGG + chr7_1:36559335-36559354 Msa1017400:CDS 30.0%
! GACAACTTTCAACATTGATT+AGG + chr7_1:36559423-36559442 Msa1017400:CDS 30.0%
! TTTTCTTGTACCTCATTACA+AGG - chr7_1:36559467-36559486 Msa1017410:three_prime_UTR 30.0%
GACTTGAGAAAAAAGGAAAA+AGG + chr7_1:36559506-36559525 Msa1017400:CDS 30.0%
TCAAGTCTTTGCCTATAAAA+TGG - chr7_1:36559519-36559538 Msa1017410:three_prime_UTR 30.0%
CAAGTCTTTGCCTATAAAAT+GGG - chr7_1:36559520-36559539 Msa1017410:three_prime_UTR 30.0%
! AATTACTGCTCCCATTTTAT+AGG + chr7_1:36559533-36559552 Msa1017400:CDS 30.0%
AGAGGAATGTTTGAACAATA+TGG - chr7_1:36559712-36559731 Msa1017410:three_prime_UTR 30.0%
GTTTACTAAGAAGGAATGTT+TGG + chr7_1:36559752-36559771 Msa1017400:CDS 30.0%
TAAAGGTGAAGATACATTTG+TGG + chr7_1:36559907-36559926 Msa1017400:CDS 30.0%
TTCACCTTTAATGACTACAA+TGG - chr7_1:36559917-36559936 Msa1017410:three_prime_UTR 30.0%
CGGACAAAAAATAAGGTTTA+CGG - chr7_1:36559958-36559977 Msa1017410:three_prime_UTR 30.0%
! TATAAGCCACGTCTTAATTT+TGG - chr7_1:36560000-36560019 Msa1017410:three_prime_UTR 30.0%
TTTCTACCAAAATTAAGACG+TGG + chr7_1:36560009-36560028 Msa1017400:CDS 30.0%
ATATTCTCAATCTCATTCTC+TGG + chr7_1:36560134-36560153 Msa1017400:CDS 30.0%
TTAGGATATGAATAAGGCAT+AGG + chr7_1:36560217-36560236 Msa1017400:CDS 30.0%
GTTCTGTTAGGATATGAATA+AGG + chr7_1:36560223-36560242 Msa1017400:CDS 30.0%
TCTTAGAATTGGATAGATTC+AGG + chr7_1:36560421-36560440 Msa1017400:CDS 30.0%
TAGCATGCTCTATTAATTGT+TGG - chr7_1:36560798-36560817 Msa1017410:three_prime_UTR 30.0%
!! CCCGAAAATATATCACTTTT+TGG - chr7_1:36560823-36560842 Msa1017410:three_prime_UTR 30.0%
AATATCAACTTTAGTCCTTC+TGG - chr7_1:36560859-36560878 Msa1017410:three_prime_UTR 30.0%
! AAAAGGACTAACTTCTTTTC+TGG - chr7_1:36560937-36560956 Msa1017410:three_prime_UTR 30.0%
! TCCTCTTTGGTTTCATTAAA+TGG - chr7_1:36561022-36561041 Msa1017410:three_prime_UTR 30.0%
TCCATTTAATGAAACCAAAG+AGG + chr7_1:36561026-36561045 None:intergenic 30.0%
TTGGTTTCATTAAATGGATC+GGG - chr7_1:36561028-36561047 Msa1017410:three_prime_UTR 30.0%
GATTATACCGATACTATGTT+TGG - chr7_1:36561117-36561136 Msa1017410:CDS 30.0%
AGATATAACTAATGCACGTT+TGG + chr7_1:36561223-36561242 None:intergenic 30.0%
! TTCTAATTTTCAATGCCACA+AGG + chr7_1:36561321-36561340 None:intergenic 30.0%
CAAACAAAGTAGATAGAACA+TGG - chr7_1:36561417-36561436 Msa1017410:intron 30.0%
ATTACTCAACATGAAGAACA+AGG + chr7_1:36561612-36561631 None:intergenic 30.0%
! TTGATAAGGTTGGTTAGATT+AGG + chr7_1:36561713-36561732 None:intergenic 30.0%
TGAGAAAGAATTGATAAGGT+TGG + chr7_1:36561723-36561742 None:intergenic 30.0%
TTAGCTGATATAAGACTGAA+TGG + chr7_1:36561755-36561774 None:intergenic 30.0%
ATATCAGCTAATTCCTTCAA+TGG - chr7_1:36561764-36561783 Msa1017410:intron 30.0%
GATAAGAAAAAGACCATTGA+AGG + chr7_1:36561780-36561799 None:intergenic 30.0%
TGAAATTGTTAGTGGAATGA+TGG + chr7_1:36561858-36561877 None:intergenic 30.0%
!!! TGATGTTTATAGTTTTGGTG+TGG + chr7_1:36561888-36561907 None:intergenic 30.0%
! AAATCAGTCAAAGGGATTTT+CGG + chr7_1:36561959-36561978 None:intergenic 30.0%
ATACTACCAAATCAGTCAAA+GGG + chr7_1:36561967-36561986 None:intergenic 30.0%
! TAGTATCATTGACTACATGA+TGG - chr7_1:36561981-36562000 Msa1017410:CDS 30.0%
ATTTCACTATGTTGTACCTA+TGG - chr7_1:36562158-36562177 Msa1017410:intron 30.0%
TATGAACGACTATCAATGTT+TGG + chr7_1:36562197-36562216 None:intergenic 30.0%
!!! ATGTTTTGGTGAAAAGGTTA+GGG + chr7_1:36562405-36562424 None:intergenic 30.0%
!!! ATTGTCATGTTTTGGTGAAA+AGG + chr7_1:36562411-36562430 None:intergenic 30.0%
AACAAAAAAACAGTGGAATC+AGG + chr7_1:36562603-36562622 None:intergenic 30.0%
! GATTAAGCTAAGATTTTCAG+CGG - chr7_1:36562684-36562703 Msa1017410:intron 30.0%
! TTTGAGGCCTAATATGAAAT+GGG + chr7_1:36562842-36562861 None:intergenic 30.0%
! ATTTGAGGCCTAATATGAAA+TGG + chr7_1:36562843-36562862 None:intergenic 30.0%
TTCATATTAGGCCTCAAATT+TGG - chr7_1:36562844-36562863 Msa1017410:intron 30.0%
!! TTTTGATTGATTGGATCAGA+AGG + chr7_1:36562990-36563009 None:intergenic 30.0%
! AATGCTAAGTTAGGTGATTT+TGG + chr7_1:36563288-36563307 None:intergenic 30.0%
TCTCATTACAATGCTAAGTT+AGG + chr7_1:36563297-36563316 None:intergenic 30.0%
! TCATGTCTTGTTGTGCATAT+TGG - chr7_1:36558835-36558854 Msa1017410:three_prime_UTR 35.0%
ATCATCCGTACTTCATATTC+AGG + chr7_1:36558885-36558904 Msa1017400:CDS 35.0%
!!! GTTTTTGAAACCGAGTTGAA+CGG - chr7_1:36559005-36559024 Msa1017410:three_prime_UTR 35.0%
ACCCGAATTGTAGTAAAGTA+AGG + chr7_1:36559051-36559070 Msa1017400:CDS 35.0%
GCAGTTGAATTATGATTCAG+AGG - chr7_1:36559118-36559137 Msa1017410:three_prime_UTR 35.0%
GGTCTTAATGTTTCAATGTC+CGG - chr7_1:36559139-36559158 Msa1017410:three_prime_UTR 35.0%
TAATGTTTCAATGTCCGGTT+CGG - chr7_1:36559144-36559163 Msa1017410:three_prime_UTR 35.0%
GACAATCGAGAATGAGTTTA+AGG - chr7_1:36559181-36559200 Msa1017410:three_prime_UTR 35.0%
AGGCAAAGACTTGAGAAAAA+AGG + chr7_1:36559513-36559532 Msa1017400:CDS 35.0%
ACAAAGTGAGAAAAAGAGCT+TGG - chr7_1:36559567-36559586 Msa1017410:three_prime_UTR 35.0%
TATGTTGTTCCCTATGTTCA+AGG - chr7_1:36559672-36559691 Msa1017410:three_prime_UTR 35.0%
GAGAGACTCAAAACTTTAAG+AGG - chr7_1:36559694-36559713 Msa1017410:three_prime_UTR 35.0%
GACAAAGTCTCAGACATTTA+AGG + chr7_1:36559787-36559806 Msa1017400:CDS 35.0%
TTTCAGTTCATGAGACTCTA+TGG + chr7_1:36560081-36560100 Msa1017400:CDS 35.0%
TTTCAGTACTGTGATGTTGA+TGG - chr7_1:36560155-36560174 Msa1017410:three_prime_UTR 35.0%
TTGTTTGTTTCAGTCACCAA+AGG - chr7_1:36560583-36560602 Msa1017410:three_prime_UTR 35.0%
GAAGCTTAACAAGAAAGACA+TGG - chr7_1:36560682-36560701 Msa1017410:three_prime_UTR 35.0%
!!! TCTGGTTTTGTTTTCCTCAT+AGG - chr7_1:36560955-36560974 Msa1017410:three_prime_UTR 35.0%
! TGTTTTCCTCATAGGAGAAA+TGG - chr7_1:36560963-36560982 Msa1017410:three_prime_UTR 35.0%
ACATTTAGGGAATTCCTCTT+TGG - chr7_1:36561009-36561028 Msa1017410:three_prime_UTR 35.0%
TACCGATACTATGTTTGGTT+TGG - chr7_1:36561122-36561141 Msa1017410:CDS 35.0%
TCTTAATATCACGGCCAAAT+TGG + chr7_1:36561178-36561197 None:intergenic 35.0%
AAACTTACACAGTTTCCTTG+TGG - chr7_1:36561303-36561322 Msa1017410:intron 35.0%
CATGAAGAACAAGGAAAGTA+GGG + chr7_1:36561603-36561622 None:intergenic 35.0%
ACATGAAGAACAAGGAAAGT+AGG + chr7_1:36561604-36561623 None:intergenic 35.0%
CAAATTGTGAGCATTCTTGA+TGG + chr7_1:36561644-36561663 None:intergenic 35.0%
AATTGTTAGTGGAATGATGG+CGG + chr7_1:36561855-36561874 None:intergenic 35.0%
!!! TGTTTATAGTTTTGGTGTGG+TGG + chr7_1:36561885-36561904 None:intergenic 35.0%
GAAAATCCCTTTGACTGATT+TGG - chr7_1:36561958-36561977 Msa1017410:CDS 35.0%
GATACTACCAAATCAGTCAA+AGG + chr7_1:36561968-36561987 None:intergenic 35.0%
TTCTTGTCAAGAAATGAGCA+TGG + chr7_1:36562007-36562026 None:intergenic 35.0%
AGAGCAAAACTACTAAGTCT+TGG - chr7_1:36562034-36562053 Msa1017410:CDS 35.0%
GCTTGTGGTTTATGATTACT+CGG + chr7_1:36562266-36562285 None:intergenic 35.0%
ATAGATTCTCAAACGAACTC+AGG + chr7_1:36562357-36562376 None:intergenic 35.0%
!!! CATGTTTTGGTGAAAAGGTT+AGG + chr7_1:36562406-36562425 None:intergenic 35.0%
GTTTCAACCACAGGAAAATT+TGG - chr7_1:36562544-36562563 Msa1017410:intron 35.0%
! TTACAAGCCAAATTTTCCTG+TGG + chr7_1:36562554-36562573 None:intergenic 35.0%
ACAGCTGAACAAAAAAACAG+TGG + chr7_1:36562610-36562629 None:intergenic 35.0%
AGAGGATGAGATAGAAATGA+AGG - chr7_1:36562772-36562791 Msa1017410:intron 35.0%
GATAGAAATGAAGGAAGTGA+AGG - chr7_1:36562781-36562800 Msa1017410:intron 35.0%
TCCACAACCCATTTCATATT+AGG - chr7_1:36562832-36562851 Msa1017410:intron 35.0%
CACTTCATGATCCAAATTTG+AGG + chr7_1:36562858-36562877 None:intergenic 35.0%
GATACAAGGTTACAGAAAGA+TGG + chr7_1:36562934-36562953 None:intergenic 35.0%
TGCTTGAAATTGTATCTGGA+AGG + chr7_1:36563050-36563069 None:intergenic 35.0%
GTTGTGCTTGAAATTGTATC+TGG + chr7_1:36563054-36563073 None:intergenic 35.0%
!! TAAGTTAGGTGATTTTGGCA+TGG + chr7_1:36563283-36563302 None:intergenic 35.0%
CTCACAGATTTCTTCGTACT+TGG + chr7_1:36558760-36558779 Msa1017400:CDS 40.0%
ACCAATTGAACCGTTCAACT+CGG + chr7_1:36559018-36559037 Msa1017400:CDS 40.0%
!!! CTACAATTCGGGTTTTTTGG+CGG - chr7_1:36559058-36559077 Msa1017410:three_prime_UTR 40.0%
GTGAGAAAAAGAGCTTGGAA+AGG - chr7_1:36559572-36559591 Msa1017410:three_prime_UTR 40.0%
TGAGTCTCTCCTTGAACATA+GGG + chr7_1:36559684-36559703 Msa1017400:CDS 40.0%
TTGAGTCTCTCCTTGAACAT+AGG + chr7_1:36559685-36559704 Msa1017400:CDS 40.0%
TTGTTAGCAGAAGACATTCG+AGG + chr7_1:36559877-36559896 Msa1017400:CDS 40.0%
GCTGCCATTGTAGTCATTAA+AGG + chr7_1:36559924-36559943 Msa1017400:CDS 40.0%
! TGTGATGTTGATGGAAGCAA+GGG - chr7_1:36560164-36560183 Msa1017410:three_prime_UTR 40.0%
CAGAGGATAAAGGTTCTGTT+AGG + chr7_1:36560235-36560254 Msa1017400:CDS 40.0%
CGATTGAGCTAATTGAACCA+CGG + chr7_1:36560323-36560342 Msa1017400:CDS 40.0%
CGTGGTTCAATTAGCTCAAT+CGG - chr7_1:36560321-36560340 Msa1017410:three_prime_UTR 40.0%
TGCTGTCAGTCTCTTAGAAT+TGG + chr7_1:36560432-36560451 Msa1017400:CDS 40.0%
TCTAACAGTGTATTCACGAC+TGG + chr7_1:36560496-36560515 Msa1017400:CDS 40.0%
!!! GTTTTTAGTGATGTGTGCTG+GGG + chr7_1:36560744-36560763 None:intergenic 40.0%
!!! GGTTTTTAGTGATGTGTGCT+GGG + chr7_1:36560745-36560764 None:intergenic 40.0%
CGCCAAACCAAACATAGTAT+CGG + chr7_1:36561127-36561146 None:intergenic 40.0%
CGAGAAAACACATTCAGTGT+CGG + chr7_1:36561261-36561280 None:intergenic 40.0%
ATTCGCAGAATTCAAGCTCT+AGG + chr7_1:36561542-36561561 None:intergenic 40.0%
ACAAGGAAAGTAGGGAAGAA+TGG + chr7_1:36561595-36561614 None:intergenic 40.0%
CTCACAATTTGTCTCATGCT+TGG - chr7_1:36561653-36561672 Msa1017410:intron 40.0%
!! CTCATGCTTGGTCTTAATTG+AGG - chr7_1:36561665-36561684 Msa1017410:intron 40.0%
GTGGTGCTTGAAATTGTTAG+TGG + chr7_1:36561866-36561885 None:intergenic 40.0%
! GCGGCTGATGTTTATAGTTT+TGG + chr7_1:36561893-36561912 None:intergenic 40.0%
TCGCCTGAATCAACATATTC+CGG - chr7_1:36561923-36561942 Msa1017410:CDS 40.0%
! GATTTTCGGTTATATGTCGC+CGG + chr7_1:36561945-36561964 None:intergenic 40.0%
TTCAAGAATTACGGCTGAAG+AGG - chr7_1:36562069-36562088 Msa1017410:intron 40.0%
ATCAATGTTTGGTCCTCGAA+TGG + chr7_1:36562186-36562205 None:intergenic 40.0%
AAAGCTTCGACATCGGAATT+TGG + chr7_1:36562326-36562345 None:intergenic 40.0%
ATCTAGGAAAGCTTCGACAT+CGG + chr7_1:36562333-36562352 None:intergenic 40.0%
TCAAACGAACTCAGGAATCT+AGG + chr7_1:36562349-36562368 None:intergenic 40.0%
! CGACGACAATTGTCATGTTT+TGG + chr7_1:36562419-36562438 None:intergenic 40.0%
AAACATGACAATTGTCGTCG+AGG - chr7_1:36562419-36562438 Msa1017410:intron 40.0%
!! GACTTTGGAACTGCTTATCA+TGG + chr7_1:36562448-36562467 None:intergenic 40.0%
TCAAACTATGTTACAGCTGC+AGG + chr7_1:36562649-36562668 None:intergenic 40.0%
CTAGTCCTAGTAGTTTCAGA+AGG - chr7_1:36562730-36562749 Msa1017410:intron 40.0%
!! CTTCACCTTCTGAAACTACT+AGG + chr7_1:36562738-36562757 None:intergenic 40.0%
!! GCCTAATATGAAATGGGTTG+TGG + chr7_1:36562836-36562855 None:intergenic 40.0%
! TTCTAGAAGCAGCTGATACA+AGG + chr7_1:36562948-36562967 None:intergenic 40.0%
! ATCAGAAGGCTTTGTGATGA+AGG + chr7_1:36562976-36562995 None:intergenic 40.0%
CATTTGGAAGTTCCATTGCT+TGG - chr7_1:36563096-36563115 Msa1017410:intron 40.0%
AGCTTGCAAAAACCAAGCAA+TGG + chr7_1:36563111-36563130 None:intergenic 40.0%
!! CTTGGTTTTTGCAAGCTTTC+TGG - chr7_1:36563114-36563133 Msa1017410:intron 40.0%
TTGGGAGAAACATCGAGAAT+TGG + chr7_1:36563162-36563181 None:intergenic 40.0%
! ACCGAGTTGAACGGTTCAAT+TGG - chr7_1:36559014-36559033 Msa1017410:three_prime_UTR 45.0%
!!! GTTTTTTGGCGGTGCTTTTG+CGG - chr7_1:36559069-36559088 Msa1017410:three_prime_UTR 45.0%
! CTGTGATGTTGATGGAAGCA+AGG - chr7_1:36560163-36560182 Msa1017410:three_prime_UTR 45.0%
! GTGATGTTGATGGAAGCAAG+GGG - chr7_1:36560165-36560184 Msa1017410:three_prime_UTR 45.0%
GTTCAACTAGTTGAACCGTC+CGG - chr7_1:36560468-36560487 Msa1017410:three_prime_UTR 45.0%
TTCAACTAGTTGAACCGTCC+GGG - chr7_1:36560469-36560488 Msa1017410:three_prime_UTR 45.0%
!!! CGGTTTTTAGTGATGTGTGC+TGG + chr7_1:36560746-36560765 None:intergenic 45.0%
TCCTCATAGGAGAAATGGAC+TGG - chr7_1:36560968-36560987 Msa1017410:three_prime_UTR 45.0%
! CCTCATAGGAGAAATGGACT+GGG - chr7_1:36560969-36560988 Msa1017410:three_prime_UTR 45.0%
!! GAAATGGACTGGGACAAGAA+CGG - chr7_1:36560979-36560998 Msa1017410:three_prime_UTR 45.0%
!! AAATGGACTGGGACAAGAAC+GGG - chr7_1:36560980-36560999 Msa1017410:three_prime_UTR 45.0%
AGAACGGGCAAGTCACATTT+AGG - chr7_1:36560995-36561014 Msa1017410:three_prime_UTR 45.0%
GAACGGGCAAGTCACATTTA+GGG - chr7_1:36560996-36561015 Msa1017410:three_prime_UTR 45.0%
! TGAAGCGCTCTTATGATCTG+CGG + chr7_1:36561092-36561111 None:intergenic 45.0%
!! TCAGTGTCGGTTTGTTTCAG+CGG + chr7_1:36561248-36561267 None:intergenic 45.0%
! GGAGGTTCTTTTGGTGAAGA+AGG + chr7_1:36561816-36561835 None:intergenic 45.0%
TCTTCACCAAAAGAACCTCC+TGG - chr7_1:36561816-36561835 Msa1017410:intron 45.0%
!! TCGCCGGAATATGTTGATTC+AGG + chr7_1:36561929-36561948 None:intergenic 45.0%
CACAAGCATCTCTCCTTGTT+CGG - chr7_1:36562279-36562298 Msa1017410:intron 45.0%
TAACTTCTCCGAGTCGAGAA+GGG + chr7_1:36562482-36562501 None:intergenic 45.0%
TCTCTTGGAGTTTCAACCAC+AGG - chr7_1:36562535-36562554 Msa1017410:intron 45.0%
! ACTAGGACTAGTAGCACAAG+TGG + chr7_1:36562721-36562740 None:intergenic 45.0%
! GGTTTTTGCAAGCTTTCTGG+TGG - chr7_1:36563117-36563136 Msa1017410:intron 45.0%
TCGAGAATTGGCGGAACAAT+TGG + chr7_1:36563150-36563169 None:intergenic 45.0%
GGAGAAACATCGAGAATTGG+CGG + chr7_1:36563159-36563178 None:intergenic 45.0%
!! TAGGTGATTTTGGCATGGCA+AGG + chr7_1:36563278-36563297 None:intergenic 45.0%
GGGACTTCTTCTTGTCATGC+TGG - chr7_1:36559202-36559221 Msa1017410:three_prime_UTR 50.0%
GGCAGCGTCTCACACATTTA+CGG - chr7_1:36559938-36559957 Msa1017410:three_prime_UTR 50.0%
TGGACCGCGATGAGATTTCT+GGG - chr7_1:36560297-36560316 Msa1017410:three_prime_UTR 50.0%
TGAACTGCAGTTGGTCCGAT+CGG + chr7_1:36560397-36560416 Msa1017400:CDS 50.0%
GATTCAGGCTGAACTGCAGT+TGG + chr7_1:36560406-36560425 Msa1017400:CDS 50.0%
CTAAGAGACTGACAGCAGAC+TGG - chr7_1:36560435-36560454 Msa1017410:three_prime_UTR 50.0%
! ACAGCAGACTGGTCAGTTCT+CGG - chr7_1:36560446-36560465 Msa1017410:three_prime_UTR 50.0%
AGTGTATTCACGACTGGACC+CGG + chr7_1:36560490-36560509 Msa1017400:CDS 50.0%
AGCTGTGCTAACTCTGCCTT+TGG + chr7_1:36560602-36560621 None:intergenic 50.0%
AAGGCAGAGTTAGCACAGCT+TGG - chr7_1:36560602-36560621 Msa1017410:three_prime_UTR 50.0%
GTGCTGGGGATCTTTCTCTA+GGG + chr7_1:36560730-36560749 None:intergenic 50.0%
TGTGCTGGGGATCTTTCTCT+AGG + chr7_1:36560731-36560750 None:intergenic 50.0%
CCCAGTCCATTTCTCCTATG+AGG + chr7_1:36560972-36560991 None:intergenic 50.0%
CTCGCGTTTCGATGCCAATT+TGG - chr7_1:36561161-36561180 Msa1017410:intron 50.0%
! CAGGTACCAGGAGGTTCTTT+TGG + chr7_1:36561825-36561844 None:intergenic 50.0%
!! GAATGATGGCGGTGGATTTC+AGG + chr7_1:36561844-36561863 None:intergenic 50.0%
!! TGTTAGTGGAATGATGGCGG+TGG + chr7_1:36561852-36561871 None:intergenic 50.0%
ACTATAAACATCAGCCGCCG+AGG - chr7_1:36561895-36561914 Msa1017410:intron 50.0%
!! TGTACCTATGGTGCCATTCG+AGG - chr7_1:36562170-36562189 Msa1017410:intron 50.0%
CGAACAAGGAGAGATGCTTG+TGG + chr7_1:36562281-36562300 None:intergenic 50.0%
! GGAATTTGGTTCAGCTTCGC+GGG + chr7_1:36562312-36562331 None:intergenic 50.0%
! CGGAATTTGGTTCAGCTTCG+CGG + chr7_1:36562313-36562332 None:intergenic 50.0%
AGGGTAGCAGAGCTTGACTT+TGG + chr7_1:36562463-36562482 None:intergenic 50.0%
GTAACTTCTCCGAGTCGAGA+AGG + chr7_1:36562483-36562502 None:intergenic 50.0%
TAGCACAAGTGGCACGATCT+CGG + chr7_1:36562710-36562729 None:intergenic 50.0%
!! GTGATTTTGGCATGGCAAGG+TGG + chr7_1:36563275-36563294 None:intergenic 50.0%
CTGGACCGCGATGAGATTTC+TGG - chr7_1:36560296-36560315 Msa1017410:three_prime_UTR 55.0%
ACGGCCCAGAAATCTCATCG+CGG + chr7_1:36560304-36560323 Msa1017400:CDS 55.0%
TATTCACGACTGGACCCGGA+CGG + chr7_1:36560486-36560505 Msa1017400:CDS 55.0%
! GGTGGATTTCAGGTACCAGG+AGG + chr7_1:36561834-36561853 None:intergenic 55.0%
ATAAACATCAGCCGCCGAGG+TGG - chr7_1:36561898-36561917 Msa1017410:intron 55.0%
TGATTCAGGCGAAGCCACCT+CGG + chr7_1:36561915-36561934 None:intergenic 55.0%
TGGTCCTCGAATGGCACCAT+AGG + chr7_1:36562177-36562196 None:intergenic 55.0%
! ATTTGGTTCAGCTTCGCGGG+TGG + chr7_1:36562309-36562328 None:intergenic 55.0%
CTCTGCTACCCTTCTCGACT+CGG - chr7_1:36562471-36562490 Msa1017410:intron 55.0%
! GCGATGAGATTTCTGGGCCG+TGG - chr7_1:36560303-36560322 Msa1017410:three_prime_UTR 60.0%
! GGCGGTGGATTTCAGGTACC+AGG + chr7_1:36561837-36561856 None:intergenic 60.0%
GAGAATCTATCGCGCAGCGC+AGG - chr7_1:36562367-36562386 Msa1017410:intron 60.0%
TTCAGGCGAAGCCACCTCGG+CGG + chr7_1:36561912-36561931 None:intergenic 65.0%
CGCGGGTGGTGCACCGAACA+AGG + chr7_1:36562295-36562314 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 36558735 36563385 36558735 ID=Msa1017410;Name=Msa1017410
chr7_1 mRNA 36558735 36563385 36558735 ID=Msa1017410-mRNA-1;Parent=Msa1017410;Name=Msa1017410-mRNA-1;_AED=0.12;_eAED=0.14;_QI=0|0|0.25|1|0|0.25|4|2317|119
chr7_1 exon 36558735 36561143 36558735 ID=Msa1017410-mRNA-1:exon:6897;Parent=Msa1017410-mRNA-1
chr7_1 exon 36561446 36561524 36561446 ID=Msa1017410-mRNA-1:exon:6896;Parent=Msa1017410-mRNA-1
chr7_1 exon 36561912 36562060 36561912 ID=Msa1017410-mRNA-1:exon:6895;Parent=Msa1017410-mRNA-1
chr7_1 exon 36563346 36563385 36563346 ID=Msa1017410-mRNA-1:exon:6894;Parent=Msa1017410-mRNA-1
chr7_1 CDS 36563346 36563385 36563346 ID=Msa1017410-mRNA-1:cds;Parent=Msa1017410-mRNA-1
chr7_1 CDS 36561912 36562060 36561912 ID=Msa1017410-mRNA-1:cds;Parent=Msa1017410-mRNA-1
chr7_1 CDS 36561446 36561524 36561446 ID=Msa1017410-mRNA-1:cds;Parent=Msa1017410-mRNA-1
chr7_1 CDS 36561052 36561143 36561052 ID=Msa1017410-mRNA-1:cds;Parent=Msa1017410-mRNA-1
chr7_1 three_prime_UTR 36558735 36561051 36558735 ID=Msa1017410-mRNA-1:three_prime_utr;Parent=Msa1017410-mRNA-1
Gene Sequence

>Msa1017410

ATGACTCTAAAAATAGCTGTAGCCAAGTACGAAGAAATCTATGAAGACTCTAATGAATCCATAGAGTCTCATGAACTGAAAACTTTCTTAGAAGATTTGCAACTTCATCTTCCAGAGAATGAGATTGAGAATATTTTTCAGTACTGTGATGTTGATGGAAGCAAGGGGATACAGTTCAATGAATTTATTTCACCAAAGGCAGAGTTAGCACAGCTTGGACAAGTATTTGATAAAATCGTTGAAATCTTTCTCTTTTTTGATCAAAATGGAGAAATGGACTGGGACAAGAACGGGCAAGTCACATTTAGGGAATTCCTCTTTGGTTTCATTAAATGGATCGGGATCGATGTTGATGAATAG
Protein sequence

>Msa1017410

MTLKIAVAKYEEIYEDSNESIESHELKTFLEDLQLHLPENEIENIFQYCDVDGSKGIQFNEFISPKAELAQLGQVFDKIVEIFLFFDQNGEMDWDKNGQVTFREFLFGFIKWIGIDVDE*