Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1018530 | RHN78239.1 | 52.695 | 167 | 41 | 2 | 110 | 271 | 146 | 279 | 8.22e-30 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1018530 | A0A396JJ35 | 52.695 | 167 | 41 | 2 | 110 | 271 | 146 | 279 | 3.93e-30 | 124 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0407750 | Msa1018530 | 0.805573 | 1.250746e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1018530 | MtrunA17_Chr1g0163341 | 52.695 | 167 | 41 | 2 | 110 | 271 | 146 | 279 | 7.56e-34 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 70 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAATTCTCTCCAAATTC+TGG | 0.204742 | 7_1:+38537570 | Msa1018530:CDS |
| TGGAGGCATGAACCAAATTT+TGG | 0.206217 | 7_1:-38537511 | None:intergenic |
| GCTCCCTTCAAACCAAAATT+TGG | 0.217876 | 7_1:+38537499 | Msa1018530:CDS |
| TGAACCAACTATTCGGTATA+TGG | 0.265348 | 7_1:-38537785 | None:intergenic |
| TGCCATTGTCTCTCCTTTAG+AGG | 0.274864 | 7_1:+38537217 | Msa1018530:CDS |
| TGCTAAACAGACGGTTGATT+TGG | 0.312827 | 7_1:+38537004 | Msa1018530:CDS |
| AGAGAATTTGCACACTCTTA+AGG | 0.330686 | 7_1:-38537559 | None:intergenic |
| GAGAATTTGCACACTCTTAA+GGG | 0.341331 | 7_1:-38537558 | None:intergenic |
| TACTCCAGTTCTCACCCCTT+TGG | 0.368739 | 7_1:+38537334 | Msa1018530:CDS |
| CTATCATAGTAGGTAGTTAC+AGG | 0.376079 | 7_1:-38537461 | None:intergenic |
| TTGAGCACGGGTCCTCATTC+CGG | 0.381998 | 7_1:-38537738 | None:intergenic |
| GGTATATGGCAAGGCAGCTT+TGG | 0.391194 | 7_1:-38537771 | None:intergenic |
| GTTACAGGTTGTGGCATAGA+TGG | 0.394733 | 7_1:-38537446 | None:intergenic |
| AAAGATTTGAACCAACTATT+CGG | 0.400658 | 7_1:-38537792 | None:intergenic |
| AATGAGGACCCGTGCTCAAA+AGG | 0.403578 | 7_1:+38537742 | Msa1018530:CDS |
| TGTGGATCCGGTTACTCGTT+GGG | 0.412152 | 7_1:+38537307 | Msa1018530:CDS |
| GCCCTCAAAGGTTGTGGATC+CGG | 0.417570 | 7_1:+38537295 | Msa1018530:CDS |
| TCAGAATCAATGTTAGTCAT+TGG | 0.434150 | 7_1:-38537047 | None:intergenic |
| GCAAATTCTCTCCAAATTCT+GGG | 0.434546 | 7_1:+38537571 | Msa1018530:CDS |
| AGCAGAATGGAAAGAGGGTT+TGG | 0.448439 | 7_1:-38537531 | None:intergenic |
| GCACAATCACCTGGCTCTAC+AGG | 0.449304 | 7_1:-38537386 | None:intergenic |
| GTATTAGCCCAACGAGTAAC+CGG | 0.458637 | 7_1:-38537314 | None:intergenic |
| AACTGCTAGGCAAAGCCAAA+GGG | 0.462782 | 7_1:-38537349 | None:intergenic |
| CCGGCTGAGTTGAAGCTAGT+AGG | 0.469287 | 7_1:-38537719 | None:intergenic |
| ACTTGTCAAACTATCATAGT+AGG | 0.488773 | 7_1:-38537471 | None:intergenic |
| CCGAGGTTTCCTGTAGAGCC+AGG | 0.491126 | 7_1:+38537377 | Msa1018530:CDS |
| AACCGGATCCACAACCTTTG+AGG | 0.493825 | 7_1:-38537297 | None:intergenic |
| AAAGCCAAAGGGGTGAGAAC+TGG | 0.497464 | 7_1:-38537338 | None:intergenic |
| TAGTAGGTAGTTACAGGTTG+TGG | 0.499222 | 7_1:-38537455 | None:intergenic |
| CTCTCCTTTAGAGGTTGTTG+AGG | 0.509422 | 7_1:+38537226 | Msa1018530:CDS |
| TTGTGGATCCGGTTACTCGT+TGG | 0.510553 | 7_1:+38537306 | Msa1018530:CDS |
| ACCGGATCCACAACCTTTGA+GGG | 0.522069 | 7_1:-38537296 | None:intergenic |
| TGATATGACCCTTGGGCAGT+TGG | 0.522244 | 7_1:+38536980 | None:intergenic |
| ACTACCTCAACAACCTCTAA+AGG | 0.524105 | 7_1:-38537230 | None:intergenic |
| AGAAAGGCCCTCAAAGGTTG+TGG | 0.525218 | 7_1:+38537289 | Msa1018530:CDS |
| ATGAGGACCCGTGCTCAAAA+GGG | 0.526910 | 7_1:+38537743 | Msa1018530:CDS |
| AATGACTAACATTGATTCTG+AGG | 0.530687 | 7_1:+38537049 | Msa1018530:CDS |
| ATATGGCAAGGCAGCTTTGG+AGG | 0.534239 | 7_1:-38537768 | None:intergenic |
| TTAGTGCTCTTTGACAGACT+TGG | 0.534582 | 7_1:-38537656 | None:intergenic |
| CACATACTTCTATTGAAGAA+AGG | 0.536545 | 7_1:+38537273 | Msa1018530:CDS |
| TAAATACTGATATGACCCTT+GGG | 0.542549 | 7_1:+38536973 | None:intergenic |
| GAACTGCTAGGCAAAGCCAA+AGG | 0.552418 | 7_1:-38537350 | None:intergenic |
| TCTTAAGGGCTGCAGCAGAA+TGG | 0.555193 | 7_1:-38537544 | None:intergenic |
| TGCCTAGCAGTTCTGTTCCG+AGG | 0.555670 | 7_1:+38537360 | Msa1018530:CDS |
| GTAAATACTGATATGACCCT+TGG | 0.557809 | 7_1:+38536972 | None:intergenic |
| GCTTCAACTCAGCCGGAATG+AGG | 0.558210 | 7_1:+38537726 | Msa1018530:CDS |
| CCTACTAGCTTCAACTCAGC+CGG | 0.558517 | 7_1:+38537719 | Msa1018530:CDS |
| CTGCTCAAAGGTTGATGTGA+TGG | 0.560282 | 7_1:-38537627 | None:intergenic |
| TATTGAAGAAAGGCCCTCAA+AGG | 0.561132 | 7_1:+38537283 | Msa1018530:CDS |
| TGCTCATATTGCAGATATTG+CGG | 0.565485 | 7_1:+38537406 | Msa1018530:CDS |
| GTTTAGCAGCCAACTGCCCA+AGG | 0.567596 | 7_1:-38536989 | None:intergenic |
| AGAATGGAAAGAGGGTTTGG+AGG | 0.573485 | 7_1:-38537528 | None:intergenic |
| CAAATTCTCTCCAAATTCTG+GGG | 0.583747 | 7_1:+38537572 | Msa1018530:CDS |
| GGCTGCAGCAGAATGGAAAG+AGG | 0.587130 | 7_1:-38537537 | None:intergenic |
| GCAATATGAGCACAATCACC+TGG | 0.589929 | 7_1:-38537395 | None:intergenic |
| AAATTCTCTCCAAATTCTGG+GGG | 0.591662 | 7_1:+38537573 | Msa1018530:CDS |
| AAGTCTGTCAAAGAGCACTA+AGG | 0.599606 | 7_1:+38537658 | Msa1018530:CDS |
| ACTTGGATAATGCTGCTCAA+AGG | 0.622433 | 7_1:-38537639 | None:intergenic |
| CAACTATTCGGTATATGGCA+AGG | 0.624455 | 7_1:-38537780 | None:intergenic |
| TCCGTAGAGAAAGCATCCCC+CGG | 0.627978 | 7_1:-38537143 | None:intergenic |
| GCAGTTGGCTGCTAAACAGA+CGG | 0.628212 | 7_1:+38536995 | Msa1018530:CDS |
| AACCTCTAAAGGAGAGACAA+TGG | 0.637126 | 7_1:-38537219 | None:intergenic |
| GCTGCAGCAGAATGGAAAGA+GGG | 0.642351 | 7_1:-38537536 | None:intergenic |
| TGGCATAGATGGATGAGAGG+TGG | 0.651062 | 7_1:-38537435 | None:intergenic |
| AACCTCGGAACAGAACTGCT+AGG | 0.655508 | 7_1:-38537362 | None:intergenic |
| CCTGGCTCTACAGGAAACCT+CGG | 0.655553 | 7_1:-38537377 | None:intergenic |
| TTTAGCAGCCAACTGCCCAA+GGG | 0.666875 | 7_1:-38536988 | None:intergenic |
| ACTGCTAGGCAAAGCCAAAG+GGG | 0.691404 | 7_1:-38537348 | None:intergenic |
| TTGTGGCATAGATGGATGAG+AGG | 0.703593 | 7_1:-38537438 | None:intergenic |
| AATTCTCTCCAAATTCTGGG+GGG | 0.721552 | 7_1:+38537574 | Msa1018530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAAATGATGAGAATTTTG+AGG | + | chr7_1:38537118-38537137 | Msa1018530:CDS | 25.0% |
| !! | ACTAAATGATGAGAATTTTG+AGG | + | chr7_1:38537118-38537137 | Msa1018530:CDS | 25.0% |
| TCAGAATCAATGTTAGTCAT+TGG | - | chr7_1:38537050-38537069 | None:intergenic | 30.0% | |
| !! | AATGACTAACATTGATTCTG+AGG | + | chr7_1:38537049-38537068 | Msa1018530:CDS | 30.0% |
| CACATACTTCTATTGAAGAA+AGG | + | chr7_1:38537273-38537292 | Msa1018530:CDS | 30.0% | |
| ACTTGTCAAACTATCATAGT+AGG | - | chr7_1:38537474-38537493 | None:intergenic | 30.0% | |
| !!! | GAACCAAATTTTGGTTTGAA+GGG | - | chr7_1:38537505-38537524 | None:intergenic | 30.0% |
| !!! | TGAACCAAATTTTGGTTTGA+AGG | - | chr7_1:38537506-38537525 | None:intergenic | 30.0% |
| TCAGAATCAATGTTAGTCAT+TGG | - | chr7_1:38537050-38537069 | None:intergenic | 30.0% | |
| !! | AATGACTAACATTGATTCTG+AGG | + | chr7_1:38537049-38537068 | Msa1018530:CDS | 30.0% |
| CACATACTTCTATTGAAGAA+AGG | + | chr7_1:38537273-38537292 | Msa1018530:CDS | 30.0% | |
| ACTTGTCAAACTATCATAGT+AGG | - | chr7_1:38537474-38537493 | None:intergenic | 30.0% | |
| !!! | GAACCAAATTTTGGTTTGAA+GGG | - | chr7_1:38537505-38537524 | None:intergenic | 30.0% |
| !!! | TGAACCAAATTTTGGTTTGA+AGG | - | chr7_1:38537506-38537525 | None:intergenic | 30.0% |
| !!! | TGATGAGAATTTTGAGGTTC+CGG | + | chr7_1:38537124-38537143 | Msa1018530:CDS | 35.0% |
| TGCTCATATTGCAGATATTG+CGG | + | chr7_1:38537406-38537425 | Msa1018530:CDS | 35.0% | |
| CTATCATAGTAGGTAGTTAC+AGG | - | chr7_1:38537464-38537483 | None:intergenic | 35.0% | |
| GAGAATTTGCACACTCTTAA+GGG | - | chr7_1:38537561-38537580 | None:intergenic | 35.0% | |
| AGAGAATTTGCACACTCTTA+AGG | - | chr7_1:38537562-38537581 | None:intergenic | 35.0% | |
| TGCAAATTCTCTCCAAATTC+TGG | + | chr7_1:38537570-38537589 | Msa1018530:CDS | 35.0% | |
| GCAAATTCTCTCCAAATTCT+GGG | + | chr7_1:38537571-38537590 | Msa1018530:CDS | 35.0% | |
| CAAATTCTCTCCAAATTCTG+GGG | + | chr7_1:38537572-38537591 | Msa1018530:CDS | 35.0% | |
| AAATTCTCTCCAAATTCTGG+GGG | + | chr7_1:38537573-38537592 | Msa1018530:CDS | 35.0% | |
| !!! | TGATGAGAATTTTGAGGTTC+CGG | + | chr7_1:38537124-38537143 | Msa1018530:CDS | 35.0% |
| TGCTCATATTGCAGATATTG+CGG | + | chr7_1:38537406-38537425 | Msa1018530:CDS | 35.0% | |
| CTATCATAGTAGGTAGTTAC+AGG | - | chr7_1:38537464-38537483 | None:intergenic | 35.0% | |
| GAGAATTTGCACACTCTTAA+GGG | - | chr7_1:38537561-38537580 | None:intergenic | 35.0% | |
| AGAGAATTTGCACACTCTTA+AGG | - | chr7_1:38537562-38537581 | None:intergenic | 35.0% | |
| TGCAAATTCTCTCCAAATTC+TGG | + | chr7_1:38537570-38537589 | Msa1018530:CDS | 35.0% | |
| GCAAATTCTCTCCAAATTCT+GGG | + | chr7_1:38537571-38537590 | Msa1018530:CDS | 35.0% | |
| CAAATTCTCTCCAAATTCTG+GGG | + | chr7_1:38537572-38537591 | Msa1018530:CDS | 35.0% | |
| AAATTCTCTCCAAATTCTGG+GGG | + | chr7_1:38537573-38537592 | Msa1018530:CDS | 35.0% | |
| TGCTAAACAGACGGTTGATT+TGG | + | chr7_1:38537004-38537023 | Msa1018530:CDS | 40.0% | |
| !!! | GATGAGAATTTTGAGGTTCC+GGG | + | chr7_1:38537125-38537144 | Msa1018530:CDS | 40.0% |
| !!! | ATGAGAATTTTGAGGTTCCG+GGG | + | chr7_1:38537126-38537145 | Msa1018530:CDS | 40.0% |
| ! | AACCTCTAAAGGAGAGACAA+TGG | - | chr7_1:38537222-38537241 | None:intergenic | 40.0% |
| ACTACCTCAACAACCTCTAA+AGG | - | chr7_1:38537233-38537252 | None:intergenic | 40.0% | |
| TATTGAAGAAAGGCCCTCAA+AGG | + | chr7_1:38537283-38537302 | Msa1018530:CDS | 40.0% | |
| TAGTAGGTAGTTACAGGTTG+TGG | - | chr7_1:38537458-38537477 | None:intergenic | 40.0% | |
| GCTCCCTTCAAACCAAAATT+TGG | + | chr7_1:38537499-38537518 | Msa1018530:CDS | 40.0% | |
| !! | TGGAGGCATGAACCAAATTT+TGG | - | chr7_1:38537514-38537533 | None:intergenic | 40.0% |
| AATTCTCTCCAAATTCTGGG+GGG | + | chr7_1:38537574-38537593 | Msa1018530:CDS | 40.0% | |
| ACTTGGATAATGCTGCTCAA+AGG | - | chr7_1:38537642-38537661 | None:intergenic | 40.0% | |
| TTAGTGCTCTTTGACAGACT+TGG | - | chr7_1:38537659-38537678 | None:intergenic | 40.0% | |
| !! | AAGTCTGTCAAAGAGCACTA+AGG | + | chr7_1:38537658-38537677 | Msa1018530:CDS | 40.0% |
| AGACAAAAAGCAGAAGAAGC+AGG | + | chr7_1:38537682-38537701 | Msa1018530:CDS | 40.0% | |
| TGCTAAACAGACGGTTGATT+TGG | + | chr7_1:38537004-38537023 | Msa1018530:CDS | 40.0% | |
| !!! | GATGAGAATTTTGAGGTTCC+GGG | + | chr7_1:38537125-38537144 | Msa1018530:CDS | 40.0% |
| !!! | ATGAGAATTTTGAGGTTCCG+GGG | + | chr7_1:38537126-38537145 | Msa1018530:CDS | 40.0% |
| ! | AACCTCTAAAGGAGAGACAA+TGG | - | chr7_1:38537222-38537241 | None:intergenic | 40.0% |
| ACTACCTCAACAACCTCTAA+AGG | - | chr7_1:38537233-38537252 | None:intergenic | 40.0% | |
| TATTGAAGAAAGGCCCTCAA+AGG | + | chr7_1:38537283-38537302 | Msa1018530:CDS | 40.0% | |
| TAGTAGGTAGTTACAGGTTG+TGG | - | chr7_1:38537458-38537477 | None:intergenic | 40.0% | |
| GCTCCCTTCAAACCAAAATT+TGG | + | chr7_1:38537499-38537518 | Msa1018530:CDS | 40.0% | |
| !! | TGGAGGCATGAACCAAATTT+TGG | - | chr7_1:38537514-38537533 | None:intergenic | 40.0% |
| AATTCTCTCCAAATTCTGGG+GGG | + | chr7_1:38537574-38537593 | Msa1018530:CDS | 40.0% | |
| ACTTGGATAATGCTGCTCAA+AGG | - | chr7_1:38537642-38537661 | None:intergenic | 40.0% | |
| TTAGTGCTCTTTGACAGACT+TGG | - | chr7_1:38537659-38537678 | None:intergenic | 40.0% | |
| !! | AAGTCTGTCAAAGAGCACTA+AGG | + | chr7_1:38537658-38537677 | Msa1018530:CDS | 40.0% |
| AGACAAAAAGCAGAAGAAGC+AGG | + | chr7_1:38537682-38537701 | Msa1018530:CDS | 40.0% | |
| !!! | TGAGAATTTTGAGGTTCCGG+GGG | + | chr7_1:38537127-38537146 | Msa1018530:CDS | 45.0% |
| TGCCATTGTCTCTCCTTTAG+AGG | + | chr7_1:38537217-38537236 | Msa1018530:CDS | 45.0% | |
| ! | CTCTCCTTTAGAGGTTGTTG+AGG | + | chr7_1:38537226-38537245 | Msa1018530:CDS | 45.0% |
| !!! | AGTGTCGTTTTCTCGTGAGA+AGG | + | chr7_1:38537250-38537269 | Msa1018530:CDS | 45.0% |
| GTATTAGCCCAACGAGTAAC+CGG | - | chr7_1:38537317-38537336 | None:intergenic | 45.0% | |
| AACTGCTAGGCAAAGCCAAA+GGG | - | chr7_1:38537352-38537371 | None:intergenic | 45.0% | |
| GCAATATGAGCACAATCACC+TGG | - | chr7_1:38537398-38537417 | None:intergenic | 45.0% | |
| TTGTGGCATAGATGGATGAG+AGG | - | chr7_1:38537441-38537460 | None:intergenic | 45.0% | |
| GTTACAGGTTGTGGCATAGA+TGG | - | chr7_1:38537449-38537468 | None:intergenic | 45.0% | |
| AGAATGGAAAGAGGGTTTGG+AGG | - | chr7_1:38537531-38537550 | None:intergenic | 45.0% | |
| AGCAGAATGGAAAGAGGGTT+TGG | - | chr7_1:38537534-38537553 | None:intergenic | 45.0% | |
| !! | CTGCTCAAAGGTTGATGTGA+TGG | - | chr7_1:38537630-38537649 | None:intergenic | 45.0% |
| !!! | TGAGAATTTTGAGGTTCCGG+GGG | + | chr7_1:38537127-38537146 | Msa1018530:CDS | 45.0% |
| TGCCATTGTCTCTCCTTTAG+AGG | + | chr7_1:38537217-38537236 | Msa1018530:CDS | 45.0% | |
| ! | CTCTCCTTTAGAGGTTGTTG+AGG | + | chr7_1:38537226-38537245 | Msa1018530:CDS | 45.0% |
| !!! | AGTGTCGTTTTCTCGTGAGA+AGG | + | chr7_1:38537250-38537269 | Msa1018530:CDS | 45.0% |
| GTATTAGCCCAACGAGTAAC+CGG | - | chr7_1:38537317-38537336 | None:intergenic | 45.0% | |
| AACTGCTAGGCAAAGCCAAA+GGG | - | chr7_1:38537352-38537371 | None:intergenic | 45.0% | |
| GCAATATGAGCACAATCACC+TGG | - | chr7_1:38537398-38537417 | None:intergenic | 45.0% | |
| TTGTGGCATAGATGGATGAG+AGG | - | chr7_1:38537441-38537460 | None:intergenic | 45.0% | |
| GTTACAGGTTGTGGCATAGA+TGG | - | chr7_1:38537449-38537468 | None:intergenic | 45.0% | |
| AGAATGGAAAGAGGGTTTGG+AGG | - | chr7_1:38537531-38537550 | None:intergenic | 45.0% | |
| AGCAGAATGGAAAGAGGGTT+TGG | - | chr7_1:38537534-38537553 | None:intergenic | 45.0% | |
| !! | CTGCTCAAAGGTTGATGTGA+TGG | - | chr7_1:38537630-38537649 | None:intergenic | 45.0% |
| TTTAGCAGCCAACTGCCCAA+GGG | - | chr7_1:38536991-38537010 | None:intergenic | 50.0% | |
| GCAGTTGGCTGCTAAACAGA+CGG | + | chr7_1:38536995-38537014 | Msa1018530:CDS | 50.0% | |
| AGAAAGGCCCTCAAAGGTTG+TGG | + | chr7_1:38537289-38537308 | Msa1018530:CDS | 50.0% | |
| ACCGGATCCACAACCTTTGA+GGG | - | chr7_1:38537299-38537318 | None:intergenic | 50.0% | |
| AACCGGATCCACAACCTTTG+AGG | - | chr7_1:38537300-38537319 | None:intergenic | 50.0% | |
| TTGTGGATCCGGTTACTCGT+TGG | + | chr7_1:38537306-38537325 | Msa1018530:CDS | 50.0% | |
| TGTGGATCCGGTTACTCGTT+GGG | + | chr7_1:38537307-38537326 | Msa1018530:CDS | 50.0% | |
| TACTCCAGTTCTCACCCCTT+TGG | + | chr7_1:38537334-38537353 | Msa1018530:CDS | 50.0% | |
| AAAGCCAAAGGGGTGAGAAC+TGG | - | chr7_1:38537341-38537360 | None:intergenic | 50.0% | |
| ACTGCTAGGCAAAGCCAAAG+GGG | - | chr7_1:38537351-38537370 | None:intergenic | 50.0% | |
| GAACTGCTAGGCAAAGCCAA+AGG | - | chr7_1:38537353-38537372 | None:intergenic | 50.0% | |
| AACCTCGGAACAGAACTGCT+AGG | - | chr7_1:38537365-38537384 | None:intergenic | 50.0% | |
| TGGCATAGATGGATGAGAGG+TGG | - | chr7_1:38537438-38537457 | None:intergenic | 50.0% | |
| GCTGCAGCAGAATGGAAAGA+GGG | - | chr7_1:38537539-38537558 | None:intergenic | 50.0% | |
| TCTTAAGGGCTGCAGCAGAA+TGG | - | chr7_1:38537547-38537566 | None:intergenic | 50.0% | |
| AACTTCAGCCCCCCAGAATT+TGG | - | chr7_1:38537585-38537604 | None:intergenic | 50.0% | |
| ! | CCTACTAGCTTCAACTCAGC+CGG | + | chr7_1:38537719-38537738 | Msa1018530:CDS | 50.0% |
| AATGAGGACCCGTGCTCAAA+AGG | + | chr7_1:38537742-38537761 | Msa1018530:CDS | 50.0% | |
| ATGAGGACCCGTGCTCAAAA+GGG | + | chr7_1:38537743-38537762 | Msa1018530:CDS | 50.0% | |
| !!! | TGGAGGTACCCTTTTGAGCA+CGG | - | chr7_1:38537754-38537773 | None:intergenic | 50.0% |
| ! | ATATGGCAAGGCAGCTTTGG+AGG | - | chr7_1:38537771-38537790 | None:intergenic | 50.0% |
| GGTATATGGCAAGGCAGCTT+TGG | - | chr7_1:38537774-38537793 | None:intergenic | 50.0% | |
| TTTAGCAGCCAACTGCCCAA+GGG | - | chr7_1:38536991-38537010 | None:intergenic | 50.0% | |
| GCAGTTGGCTGCTAAACAGA+CGG | + | chr7_1:38536995-38537014 | Msa1018530:CDS | 50.0% | |
| AGAAAGGCCCTCAAAGGTTG+TGG | + | chr7_1:38537289-38537308 | Msa1018530:CDS | 50.0% | |
| ACCGGATCCACAACCTTTGA+GGG | - | chr7_1:38537299-38537318 | None:intergenic | 50.0% | |
| AACCGGATCCACAACCTTTG+AGG | - | chr7_1:38537300-38537319 | None:intergenic | 50.0% | |
| TTGTGGATCCGGTTACTCGT+TGG | + | chr7_1:38537306-38537325 | Msa1018530:CDS | 50.0% | |
| TGTGGATCCGGTTACTCGTT+GGG | + | chr7_1:38537307-38537326 | Msa1018530:CDS | 50.0% | |
| TACTCCAGTTCTCACCCCTT+TGG | + | chr7_1:38537334-38537353 | Msa1018530:CDS | 50.0% | |
| AAAGCCAAAGGGGTGAGAAC+TGG | - | chr7_1:38537341-38537360 | None:intergenic | 50.0% | |
| ACTGCTAGGCAAAGCCAAAG+GGG | - | chr7_1:38537351-38537370 | None:intergenic | 50.0% | |
| GAACTGCTAGGCAAAGCCAA+AGG | - | chr7_1:38537353-38537372 | None:intergenic | 50.0% | |
| AACCTCGGAACAGAACTGCT+AGG | - | chr7_1:38537365-38537384 | None:intergenic | 50.0% | |
| TGGCATAGATGGATGAGAGG+TGG | - | chr7_1:38537438-38537457 | None:intergenic | 50.0% | |
| GCTGCAGCAGAATGGAAAGA+GGG | - | chr7_1:38537539-38537558 | None:intergenic | 50.0% | |
| TCTTAAGGGCTGCAGCAGAA+TGG | - | chr7_1:38537547-38537566 | None:intergenic | 50.0% | |
| AACTTCAGCCCCCCAGAATT+TGG | - | chr7_1:38537585-38537604 | None:intergenic | 50.0% | |
| ! | CCTACTAGCTTCAACTCAGC+CGG | + | chr7_1:38537719-38537738 | Msa1018530:CDS | 50.0% |
| AATGAGGACCCGTGCTCAAA+AGG | + | chr7_1:38537742-38537761 | Msa1018530:CDS | 50.0% | |
| ATGAGGACCCGTGCTCAAAA+GGG | + | chr7_1:38537743-38537762 | Msa1018530:CDS | 50.0% | |
| !!! | TGGAGGTACCCTTTTGAGCA+CGG | - | chr7_1:38537754-38537773 | None:intergenic | 50.0% |
| ! | ATATGGCAAGGCAGCTTTGG+AGG | - | chr7_1:38537771-38537790 | None:intergenic | 50.0% |
| GGTATATGGCAAGGCAGCTT+TGG | - | chr7_1:38537774-38537793 | None:intergenic | 50.0% | |
| GTTTAGCAGCCAACTGCCCA+AGG | - | chr7_1:38536992-38537011 | None:intergenic | 55.0% | |
| TCCGGGGGATGCTTTCTCTA+CGG | + | chr7_1:38537142-38537161 | Msa1018530:CDS | 55.0% | |
| !! | TCCGTAGAGAAAGCATCCCC+CGG | - | chr7_1:38537146-38537165 | None:intergenic | 55.0% |
| GCCCTCAAAGGTTGTGGATC+CGG | + | chr7_1:38537295-38537314 | Msa1018530:CDS | 55.0% | |
| TGCCTAGCAGTTCTGTTCCG+AGG | + | chr7_1:38537360-38537379 | Msa1018530:CDS | 55.0% | |
| !! | CCTGGCTCTACAGGAAACCT+CGG | - | chr7_1:38537380-38537399 | None:intergenic | 55.0% |
| !! | GCACAATCACCTGGCTCTAC+AGG | - | chr7_1:38537389-38537408 | None:intergenic | 55.0% |
| GGCTGCAGCAGAATGGAAAG+AGG | - | chr7_1:38537540-38537559 | None:intergenic | 55.0% | |
| ! | ATTCTGGGGGGCTGAAGTTG+AGG | + | chr7_1:38537586-38537605 | Msa1018530:CDS | 55.0% |
| ! | CCGGCTGAGTTGAAGCTAGT+AGG | - | chr7_1:38537722-38537741 | None:intergenic | 55.0% |
| GCTTCAACTCAGCCGGAATG+AGG | + | chr7_1:38537726-38537745 | Msa1018530:CDS | 55.0% | |
| TTGAGCACGGGTCCTCATTC+CGG | - | chr7_1:38537741-38537760 | None:intergenic | 55.0% | |
| !!! | GGAGGTACCCTTTTGAGCAC+GGG | - | chr7_1:38537753-38537772 | None:intergenic | 55.0% |
| GTTTAGCAGCCAACTGCCCA+AGG | - | chr7_1:38536992-38537011 | None:intergenic | 55.0% | |
| TCCGGGGGATGCTTTCTCTA+CGG | + | chr7_1:38537142-38537161 | Msa1018530:CDS | 55.0% | |
| !! | TCCGTAGAGAAAGCATCCCC+CGG | - | chr7_1:38537146-38537165 | None:intergenic | 55.0% |
| GCCCTCAAAGGTTGTGGATC+CGG | + | chr7_1:38537295-38537314 | Msa1018530:CDS | 55.0% | |
| TGCCTAGCAGTTCTGTTCCG+AGG | + | chr7_1:38537360-38537379 | Msa1018530:CDS | 55.0% | |
| !! | CCTGGCTCTACAGGAAACCT+CGG | - | chr7_1:38537380-38537399 | None:intergenic | 55.0% |
| !! | GCACAATCACCTGGCTCTAC+AGG | - | chr7_1:38537389-38537408 | None:intergenic | 55.0% |
| GGCTGCAGCAGAATGGAAAG+AGG | - | chr7_1:38537540-38537559 | None:intergenic | 55.0% | |
| ! | ATTCTGGGGGGCTGAAGTTG+AGG | + | chr7_1:38537586-38537605 | Msa1018530:CDS | 55.0% |
| ! | CCGGCTGAGTTGAAGCTAGT+AGG | - | chr7_1:38537722-38537741 | None:intergenic | 55.0% |
| GCTTCAACTCAGCCGGAATG+AGG | + | chr7_1:38537726-38537745 | Msa1018530:CDS | 55.0% | |
| TTGAGCACGGGTCCTCATTC+CGG | - | chr7_1:38537741-38537760 | None:intergenic | 55.0% | |
| !!! | GGAGGTACCCTTTTGAGCAC+GGG | - | chr7_1:38537753-38537772 | None:intergenic | 55.0% |
| CCGAGGTTTCCTGTAGAGCC+AGG | + | chr7_1:38537377-38537396 | Msa1018530:CDS | 60.0% | |
| GGGGGCTGAAGTTGAGGAAG+AGG | + | chr7_1:38537592-38537611 | Msa1018530:CDS | 60.0% | |
| CCGAGGTTTCCTGTAGAGCC+AGG | + | chr7_1:38537377-38537396 | Msa1018530:CDS | 60.0% | |
| GGGGGCTGAAGTTGAGGAAG+AGG | + | chr7_1:38537592-38537611 | Msa1018530:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 38536984 | 38537799 | 38536984 | ID=Msa1018530;Name=Msa1018530 |
| chr7_1 | mRNA | 38536984 | 38537799 | 38536984 | ID=Msa1018530-mRNA-1;Parent=Msa1018530;Name=Msa1018530-mRNA-1;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|271 |
| chr7_1 | exon | 38536984 | 38537799 | 38536984 | ID=Msa1018530-mRNA-1:exon:7475;Parent=Msa1018530-mRNA-1 |
| chr7_1 | CDS | 38536984 | 38537799 | 38536984 | ID=Msa1018530-mRNA-1:cds;Parent=Msa1018530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
