AlfalfaGEDB | Msa1021240

M. sativa cultivar zhongmu-4 / Msa1021240

KEGG: K13430
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1021240	XP_003622960.1	98.368	429	7	0	1	429	1	429	0.0	884

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1021240	sp\|Q9SFT7\|PBL26_ARATH	65.837	442	117	6	1	436	1	414	0.0	567

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1021240	G7L297	98.368	429	7	0	1	429	1	429	0.0	884

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1021240	Msa1060080	0.898711	4.057737e-77	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1021240	MtrunA17_Chr7g0237401	98.368	429	7	0	1	429	1	429	0.0	884
Msa1021240	MtrunA17_Chr1g0213991	55.858	478	162	7	1	438	1	469	2.35e-173	494
Msa1021240	MtrunA17_Chr2g0286281	65.952	373	114	2	2	370	3	366	2.57e-173	495
Msa1021240	MtrunA17_Chr7g0263521	62.434	378	130	5	21	394	7	376	7.27e-168	476
Msa1021240	MtrunA17_Chr1g0181821	73.311	296	79	0	75	370	56	351	1.56e-165	470
Msa1021240	MtrunA17_Chr7g0275131	60.500	400	134	5	1	400	1	376	5.53e-162	470
Msa1021240	MtrunA17_Chr2g0327471	56.736	386	153	5	1	381	1	377	2.96e-158	453
Msa1021240	MtrunA17_Chr3g0143961	57.979	376	132	3	1	376	1	350	3.26e-156	446
Msa1021240	MtrunA17_Chr5g0443691	57.181	376	131	5	1	372	30	379	1.77e-153	441
Msa1021240	MtrunA17_Chr1g0189791	54.750	400	155	4	1	400	1	374	4.08e-150	439

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1021240	AT3G07070.1	65.837	442	117	6	1	436	1	414	0.0	567
Msa1021240	AT3G24790.2	68.901	373	84	4	1	371	1	343	0.0	512
Msa1021240	AT3G24790.1	79.866	298	60	0	74	371	28	325	3.37e-179	504
Msa1021240	AT5G13160.1	57.112	464	145	9	1	431	1	443	2.44e-174	496
Msa1021240	AT4G13190.1	75.490	306	75	0	68	373	46	351	1.65e-173	491
Msa1021240	AT5G18610.1	58.277	441	152	8	2	433	3	420	1.20e-172	494
Msa1021240	AT5G18610.2	58.277	441	152	8	2	433	3	420	1.20e-172	494
Msa1021240	AT5G18610.3	58.277	441	152	8	2	433	3	420	1.20e-172	494
Msa1021240	AT5G02800.1	72.816	309	81	1	75	380	55	363	1.03e-167	476
Msa1021240	AT3G20530.1	67.500	320	103	1	64	382	53	372	7.20e-164	467

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Find 85 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCGTTGATGAAGCCA+TGG	0.601257	7_1:+45510040	Msa1021240:CDS
AAAATCTTCCAACATCTTAT+TGG	0.148810	7_1:+45508983	Msa1021240:CDS
AAAGAGACCAACAAAGATAA+TGG	0.439819	7_1:+45507962	Msa1021240:CDS
AAAGCATCTCAACCTCAGCC+AGG	0.601278	7_1:+45507565	Msa1021240:CDS
AAATCAGATATATACAGTTT+TGG	0.395240	7_1:+45509149	Msa1021240:CDS
AACGTTCACCTTCAGGGAAT+TGG	0.316736	7_1:+45508003	Msa1021240:CDS
AAGTCACGGTATATGACAGG+TGG	0.614069	7_1:-45508960	None:intergenic
AATAACAATAACAATAACAA+TGG	0.574369	7_1:+45507502	Msa1021240:CDS
AATCACAAGAAACTTTAGGC+AGG	0.591675	7_1:+45508030	Msa1021240:CDS
AATGCAAAACTCTCTGATTT+TGG	0.107763	7_1:+45509017	Msa1021240:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATACATAAGCTATGAAACA+CGG	+	chr7_1:45507602-45507621	Msa1021240:intron	30.0%
ATATATAATAACACCGACAC+CGG	-	chr7_1:45507753-45507772	None:intergenic	30.0%
AAAGAGACCAACAAAGATAA+TGG	+	chr7_1:45507962-45507981	Msa1021240:CDS	30.0%
TTTAGGCAGGAAAATCTAAT+TGG	+	chr7_1:45508043-45508062	Msa1021240:CDS	30.0%
GGATTTGGAAGAGTTTATAA+AGG	+	chr7_1:45508073-45508092	Msa1021240:CDS	30.0%
TGAACACACATTAATACGAA+GGG	-	chr7_1:45508178-45508197	None:intergenic	30.0%
TTGAACACACATTAATACGA+AGG	-	chr7_1:45508179-45508198	None:intergenic	30.0%
GTATATGAGTTCATGTCATT+AGG	+	chr7_1:45508520-45508539	Msa1021240:CDS	30.0%
CTGATTAAGGATGCTAAAAA+AGG	-	chr7_1:45508771-45508790	None:intergenic	30.0%
AATGTATGGAAAATGCTAAC+CGG	-	chr7_1:45508806-45508825	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	45507445	45510118	45507445	ID=Msa1021240;Name=Msa1021240
chr7_1	mRNA	45507445	45510118	45507445	ID=Msa1021240-mRNA-1;Parent=Msa1021240;Name=Msa1021240-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|0\|0\|1\|1\|1\|5\|0\|438
chr7_1	exon	45507445	45507586	45507445	ID=Msa1021240-mRNA-1:exon:8982;Parent=Msa1021240-mRNA-1
chr7_1	exon	45507909	45508117	45507909	ID=Msa1021240-mRNA-1:exon:8983;Parent=Msa1021240-mRNA-1
chr7_1	exon	45508376	45508565	45508376	ID=Msa1021240-mRNA-1:exon:8984;Parent=Msa1021240-mRNA-1
chr7_1	exon	45508862	45509253	45508862	ID=Msa1021240-mRNA-1:exon:8985;Parent=Msa1021240-mRNA-1
chr7_1	exon	45509735	45510118	45509735	ID=Msa1021240-mRNA-1:exon:8986;Parent=Msa1021240-mRNA-1
chr7_1	CDS	45507445	45507586	45507445	ID=Msa1021240-mRNA-1:cds;Parent=Msa1021240-mRNA-1
chr7_1	CDS	45507909	45508117	45507909	ID=Msa1021240-mRNA-1:cds;Parent=Msa1021240-mRNA-1
chr7_1	CDS	45508376	45508565	45508376	ID=Msa1021240-mRNA-1:cds;Parent=Msa1021240-mRNA-1
chr7_1	CDS	45508862	45509253	45508862	ID=Msa1021240-mRNA-1:cds;Parent=Msa1021240-mRNA-1
chr7_1	CDS	45509735	45510118	45509735	ID=Msa1021240-mRNA-1:cds;Parent=Msa1021240-mRNA-1

Gene Sequence

>Msa1021240

ATGAGTTGCTTTTCATGTTTCTCGTCCCAAGAAAAGAAACTATCAAAGAGACCTAACAATAACAATAACAATAACAATGGAAAGAGGATACAACATCATCCTACTCAAATAACTCCTCAGAAAGCATCTCAACCTCAGCCAGAGAATCAGTATCACAAGGCAAGGGCAAACCCACCAACAGAACCTAAAATAAATAAAGAGACCAACAAAGATAATGGTCACAACATTGCTGCACAAACGTTCACCTTCAGGGAATTGGCTGCAATCACAAGAAACTTTAGGCAGGAAAATCTAATTGGTGAAGGTGGATTTGGAAGAGTTTATAAAGGAAGACTTGAAAAAACCAACCAGGAAGTAGCTGTGAAGCAACTTGACAGGAATGGATTGCAAGGAAACCGAGAGTTTCTTGTTGAAGTGTTGATGTTGAGCCTTTTACATCATAAAAATCTAGTTAATCTAATTGGATATTGTGCTGATGGAGATCAAAGACTATTGGTATATGAGTTCATGTCATTAGGATCTCTTGAGGATCATCTACTTGATCTTGAACCACAACAAAAGCCATTAGATTGGTTCACAAGAATGAAAATAGCATTGGATGCTGCAAAAGGACTAGAATATTTGCATGACAAGGCCAATCCACCTGTCATATACCGTGACTTAAAATCTTCCAACATCTTATTGGACAAAGATTTCAATGCAAAACTCTCTGATTTTGGACTAGCAAAGCTGGGACCAACAGGGGATATGTCTCATGTGTCTTCAAGAGTAATGGGGACTTATGGATATTGTGCCCCTGAGTATCAAAGAACAGGTCAACTCACTGTAAAATCAGATATATACAGTTTTGGTGTTGTTTTGCTTGAATTGATTACTGGAAGGAGAACTATTGATAACACAAGACCTTCAAGGGAGCAAAATCTTGTTTCTTGGTCATATCCAGTGTTCAAGGACCCACAAAGATATCCAGAATTAGCAGATCCAAAACTTGAAGGAAACTTTCCAATGAGATCATTACATCAAGCAGTGGCAGTAGCAGCTATGTGTCTAAATGAAGAACCATCAGTGAGACCATTGATAAGTGATGTTGTAACAGCTCTTAGTTTCCTTGGAGTAGATCCAATGAATCAAGATCCACAAGTTTTGTCACCAATTGACATGCCATCACCAACACAAAAGAATGAAGAAAGTAGTGCAACCTTGAGTTTTCTCGACGATGATAGTGCCGTTGAACGCCAAAAAGCCGTTGATGAAGCCATGGAATGGGGTTCAAATACTAGAAATAAACAAAGGCCTGACAGTTCTTCATCTTTGTAA

Protein sequence

>Msa1021240

MSCFSCFSSQEKKLSKRPNNNNNNNNGKRIQHHPTQITPQKASQPQPENQYHKARANPPTEPKINKETNKDNGHNIAAQTFTFRELAAITRNFRQENLIGEGGFGRVYKGRLEKTNQEVAVKQLDRNGLQGNREFLVEVLMLSLLHHKNLVNLIGYCADGDQRLLVYEFMSLGSLEDHLLDLEPQQKPLDWFTRMKIALDAAKGLEYLHDKANPPVIYRDLKSSNILLDKDFNAKLSDFGLAKLGPTGDMSHVSSRVMGTYGYCAPEYQRTGQLTVKSDIYSFGVVLLELITGRRTIDNTRPSREQNLVSWSYPVFKDPQRYPELADPKLEGNFPMRSLHQAVAVAAMCLNEEPSVRPLISDVVTALSFLGVDPMNQDPQVLSPIDMPSPTQKNEESSATLSFLDDDSAVERQKAVDEAMEWGSNTRNKQRPDSSSSL*