Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1023380 | XP_013449031.1 | 93.683 | 839 | 52 | 1 | 1 | 839 | 1 | 838 | 0.0 | 1574 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1023380 | A0A072U1M6 | 93.683 | 839 | 52 | 1 | 1 | 839 | 1 | 838 | 0.0 | 1574 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0405680 | Msa1023380 | 0.808728 | 2.686149e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1023380 | MtrunA17_Chr7g0240931 | 93.683 | 839 | 52 | 1 | 1 | 839 | 1 | 838 | 0.0 | 1574 |
| Msa1023380 | MtrunA17_Chr4g0008861 | 46.750 | 877 | 365 | 26 | 42 | 839 | 74 | 927 | 0.0 | 577 |
| Msa1023380 | MtrunA17_Chr2g0328721 | 33.234 | 337 | 180 | 9 | 525 | 839 | 602 | 915 | 2.88e-49 | 187 |
| Msa1023380 | MtrunA17_Chr4g0032351 | 34.341 | 364 | 192 | 12 | 509 | 839 | 527 | 876 | 3.17e-49 | 187 |
| Msa1023380 | MtrunA17_Chr1g0186181 | 36.800 | 125 | 66 | 4 | 689 | 802 | 471 | 593 | 1.14e-16 | 84.3 |
| Msa1023380 | MtrunA17_Chr5g0397401 | 29.966 | 297 | 167 | 12 | 531 | 802 | 272 | 552 | 5.54e-15 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1023380 | AT5G01030.3 | 37.931 | 435 | 202 | 14 | 421 | 839 | 362 | 744 | 3.76e-64 | 229 |
| Msa1023380 | AT5G01030.1 | 37.931 | 435 | 202 | 14 | 421 | 839 | 362 | 744 | 3.76e-64 | 229 |
| Msa1023380 | AT5G01030.2 | 37.931 | 435 | 202 | 14 | 421 | 839 | 362 | 744 | 3.76e-64 | 229 |
| Msa1023380 | AT2G29510.1 | 30.110 | 455 | 254 | 10 | 421 | 839 | 413 | 839 | 3.76e-47 | 181 |
| Msa1023380 | AT5G59020.1 | 29.362 | 470 | 256 | 16 | 421 | 839 | 336 | 780 | 4.52e-47 | 180 |
| Msa1023380 | AT2G37930.3 | 32.663 | 398 | 187 | 14 | 451 | 839 | 246 | 571 | 7.09e-42 | 162 |
| Msa1023380 | AT2G37930.4 | 32.663 | 398 | 187 | 14 | 451 | 839 | 246 | 571 | 7.09e-42 | 162 |
| Msa1023380 | AT2G37930.1 | 32.663 | 398 | 187 | 14 | 451 | 839 | 218 | 543 | 7.69e-42 | 161 |
| Msa1023380 | AT2G37930.2 | 33.121 | 314 | 139 | 11 | 451 | 761 | 246 | 491 | 1.90e-32 | 132 |
| Msa1023380 | AT1G04490.9 | 39.496 | 119 | 64 | 4 | 690 | 807 | 282 | 393 | 2.26e-19 | 92.0 |
| Msa1023380 | AT1G04490.5 | 39.496 | 119 | 64 | 4 | 690 | 807 | 282 | 393 | 2.26e-19 | 92.0 |
| Msa1023380 | AT1G04490.6 | 39.496 | 119 | 64 | 4 | 690 | 807 | 282 | 393 | 2.26e-19 | 92.0 |
| Msa1023380 | AT1G04490.3 | 39.496 | 119 | 64 | 4 | 690 | 807 | 282 | 393 | 2.26e-19 | 92.0 |
| Msa1023380 | AT1G04490.7 | 39.496 | 119 | 64 | 4 | 690 | 807 | 282 | 393 | 2.26e-19 | 92.0 |
| Msa1023380 | AT1G04490.2 | 39.496 | 119 | 64 | 4 | 690 | 807 | 282 | 393 | 2.26e-19 | 92.0 |
| Msa1023380 | AT1G04490.1 | 39.496 | 119 | 64 | 4 | 690 | 807 | 282 | 393 | 2.26e-19 | 92.0 |
| Msa1023380 | AT1G04490.8 | 39.496 | 119 | 64 | 4 | 690 | 807 | 282 | 393 | 2.26e-19 | 92.0 |
| Msa1023380 | AT1G63520.1 | 32.704 | 159 | 86 | 5 | 698 | 839 | 374 | 528 | 5.54e-19 | 92.0 |
| Msa1023380 | AT2G33360.2 | 39.474 | 114 | 64 | 3 | 696 | 805 | 321 | 433 | 1.23e-17 | 87.0 |
| Msa1023380 | AT2G33360.1 | 39.474 | 114 | 64 | 3 | 696 | 805 | 476 | 588 | 1.87e-17 | 87.4 |
| Msa1023380 | AT1G04490.4 | 43.836 | 73 | 34 | 3 | 690 | 761 | 282 | 348 | 2.26e-11 | 67.0 |
| Msa1023380 | AT4G11450.1 | 36.571 | 175 | 76 | 7 | 653 | 802 | 459 | 623 | 5.93e-11 | 66.6 |
Find 134 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCGAAAGCTCGTTGAATT+TGG | 0.167331 | 7_1:-50986186 | None:intergenic |
| GTTGATTCATCGATGGAAAT+TGG | 0.177608 | 7_1:+50986797 | Msa1023380:CDS |
| GTGAAAGATTATGTCCTATT+TGG | 0.209095 | 7_1:+50986528 | Msa1023380:CDS |
| TAACTTGGTTTCATTGCTTC+TGG | 0.235662 | 7_1:-50985377 | None:intergenic |
| CATATGACCAGCAATATTAT+AGG | 0.235960 | 7_1:-50986445 | None:intergenic |
| CAAGAGAAGGCTTTAAATTT+CGG | 0.250149 | 7_1:+50984917 | Msa1023380:CDS |
| AGACACAGCCTTATTCAATT+TGG | 0.253495 | 7_1:+50987174 | Msa1023380:CDS |
| AGGAAAAGAAAGGAAGTAAT+TGG | 0.262555 | 7_1:-50987484 | None:intergenic |
| CCACAAGAAAATGATATTTC+TGG | 0.274527 | 7_1:+50986708 | Msa1023380:CDS |
| AACGAGCTTTCGAACAAATA+AGG | 0.281272 | 7_1:+50986194 | Msa1023380:CDS |
| GTTAAACAACGTCGAAATTC+TGG | 0.286807 | 7_1:+50985100 | Msa1023380:CDS |
| TGAGGTTATTAGATCCTATA+TGG | 0.299017 | 7_1:+50986100 | Msa1023380:CDS |
| CAATGGCTCCAAATTGAATA+AGG | 0.307531 | 7_1:-50987182 | None:intergenic |
| CTTCATTGCTATTGAACAAT+TGG | 0.317962 | 7_1:-50984982 | None:intergenic |
| ACTGGCATGGAGCTTTGTTT+TGG | 0.319741 | 7_1:-50985970 | None:intergenic |
| CAATTCTAGCAAAGATAATA+AGG | 0.335895 | 7_1:+50986041 | Msa1023380:CDS |
| GATCAACTCCAATGCCAAAT+AGG | 0.337689 | 7_1:-50986542 | None:intergenic |
| TTCGAAAGCTCGTTGAATTT+GGG | 0.342345 | 7_1:-50986185 | None:intergenic |
| TAAATTTCGGTGTTCTTGAT+TGG | 0.342716 | 7_1:+50984930 | Msa1023380:CDS |
| AGGTAGAAGTTTAAGTTTCA+AGG | 0.347293 | 7_1:+50985933 | Msa1023380:CDS |
| TCTCCTAATGTATCAATTTG+TGG | 0.364459 | 7_1:-50984776 | None:intergenic |
| AGACTATATAATCACTATAA+AGG | 0.380603 | 7_1:-50987504 | None:intergenic |
| TATCGGTGTCAAACTGCTTT+CGG | 0.381907 | 7_1:-50986157 | None:intergenic |
| AGCTTAGCTTCGGCTTGAAT+CGG | 0.384090 | 7_1:+50985908 | Msa1023380:CDS |
| TTACTCATATCCAGGGTGTT+TGG | 0.385297 | 7_1:-50987298 | None:intergenic |
| TCTGGAACTCACTTTCTTCT+CGG | 0.390789 | 7_1:-50985359 | None:intergenic |
| CGAAATTTAAAGCCTTCTCT+TGG | 0.396747 | 7_1:-50984916 | None:intergenic |
| AATTCTTGCGGTCGTTGATC+CGG | 0.400143 | 7_1:-50986567 | None:intergenic |
| AAACCACAAATTGATACATT+AGG | 0.401357 | 7_1:+50984773 | Msa1023380:CDS |
| GATAAAGCAAATCAGAAAAT+CGG | 0.403253 | 7_1:+50984680 | Msa1023380:CDS |
| TAGAGATACTTTCATTGAAA+AGG | 0.403936 | 7_1:+50985795 | Msa1023380:CDS |
| GACTGTGGAGGTTGGGATGT+TGG | 0.405281 | 7_1:+50986831 | Msa1023380:CDS |
| TTGATTCATCGATGGAAATT+GGG | 0.408969 | 7_1:+50986798 | Msa1023380:CDS |
| CTAAGAAATCAATGTTCTAC+TGG | 0.414611 | 7_1:+50985835 | Msa1023380:CDS |
| ATATTTATTTGCTATCTCCT+TGG | 0.418849 | 7_1:-50987332 | None:intergenic |
| CTGAGGTCTCAAGTCTATAT+CGG | 0.418992 | 7_1:-50984654 | None:intergenic |
| AAAGAGAGAAGTCTTAATTC+CGG | 0.424140 | 7_1:+50985280 | Msa1023380:CDS |
| TGTGATCAACAGTGAAAGAA+AGG | 0.424770 | 7_1:+50986278 | Msa1023380:CDS |
| TGAAAGTATCTCTATTAGAT+TGG | 0.425685 | 7_1:-50985786 | None:intergenic |
| CCACTGATCCATCCTTAACT+TGG | 0.426124 | 7_1:-50985392 | None:intergenic |
| TTAGTTCCTTACTCATATCC+AGG | 0.427575 | 7_1:-50987306 | None:intergenic |
| AGCATTACAGTTATACTTCC+AGG | 0.429390 | 7_1:+50986735 | Msa1023380:CDS |
| GATGCTTTATTCTTCCATAT+AGG | 0.432118 | 7_1:-50986114 | None:intergenic |
| CCGTTAGAACGAAAAGATAA+AGG | 0.436569 | 7_1:+50985322 | Msa1023380:CDS |
| CATCATCTTCAACTGCTAGA+AGG | 0.438987 | 7_1:+50985032 | Msa1023380:CDS |
| GGATATGCCTATAATATTGC+TGG | 0.440636 | 7_1:+50986438 | Msa1023380:CDS |
| GTACTTTAAACTCTATCAAC+AGG | 0.451412 | 7_1:-50987379 | None:intergenic |
| GACATCTTATTCGAGCGATC+AGG | 0.456004 | 7_1:-50985757 | None:intergenic |
| CTATTTCTGTCACTCTCAGT+TGG | 0.457940 | 7_1:-50985871 | None:intergenic |
| ATCAAAGGACAGAAACTTCA+AGG | 0.462955 | 7_1:+50986494 | Msa1023380:CDS |
| GCTTAGCTTCGGCTTGAATC+GGG | 0.464099 | 7_1:+50985909 | Msa1023380:CDS |
| GAGAGCACAGAATGAAATCA+AGG | 0.464392 | 7_1:+50985140 | Msa1023380:CDS |
| GCTTCGCCGGAGAAGGATGA+TGG | 0.465656 | 7_1:+50986327 | Msa1023380:CDS |
| CGAAGCAAAACAATGTCTCT+TGG | 0.472535 | 7_1:-50985460 | None:intergenic |
| GAGTAGAATCCTTCCTTCAA+TGG | 0.473209 | 7_1:-50987199 | None:intergenic |
| GAAGCAATGAAACCAAGTTA+AGG | 0.473362 | 7_1:+50985380 | Msa1023380:CDS |
| TCTGAAAGTCAGCTTAGCTT+CGG | 0.476829 | 7_1:+50985898 | Msa1023380:CDS |
| AAACTTCAAGGGACAGTGTA+TGG | 0.479413 | 7_1:+50986506 | Msa1023380:CDS |
| TGATTTGCTTTATCTTTCTG+AGG | 0.485518 | 7_1:-50984671 | None:intergenic |
| AGCAAAGATAATAAGGTGAA+TGG | 0.486197 | 7_1:+50986048 | Msa1023380:CDS |
| GATTATGTCCTATTTGGCAT+TGG | 0.490771 | 7_1:+50986534 | Msa1023380:CDS |
| GAAGAAGATTCAAATATCAA+TGG | 0.493349 | 7_1:-50986009 | None:intergenic |
| AATATGTGACTGTGGAGGTT+GGG | 0.499358 | 7_1:+50986824 | Msa1023380:CDS |
| TGATGTTAACTTGCTGAAGA+AGG | 0.499777 | 7_1:+50986641 | Msa1023380:CDS |
| TAGTTTAGCTTCGCCGGAGA+AGG | 0.500667 | 7_1:+50986320 | Msa1023380:CDS |
| CAAAGGCAGTTATGCAGTCT+AGG | 0.501241 | 7_1:+50984705 | Msa1023380:CDS |
| TATCTCAAACGTTCTGATAG+AGG | 0.504558 | 7_1:+50984881 | Msa1023380:CDS |
| AAGCACATGTCTAATTTGCC+AGG | 0.504603 | 7_1:+50984857 | Msa1023380:CDS |
| CGATGAAGCTATAAGCATGC+AGG | 0.504951 | 7_1:+50985231 | Msa1023380:CDS |
| TACATAACAGATAGCTATGA+TGG | 0.505063 | 7_1:-50987413 | None:intergenic |
| GTTGAATTTGGGCTACCTAT+CGG | 0.506386 | 7_1:-50986174 | None:intergenic |
| TCAAACTGCTTTCGGATGAA+TGG | 0.508231 | 7_1:-50986149 | None:intergenic |
| GAAGCAAGATCGGTCGCAGA+AGG | 0.511831 | 7_1:-50985661 | None:intergenic |
| ATTCAATTTGGAGCCATTGA+AGG | 0.514991 | 7_1:+50987186 | Msa1023380:CDS |
| GCGGTAGATGGACGAGCCAC+TGG | 0.515731 | 7_1:+50986397 | Msa1023380:CDS |
| GAATATGTGACTGTGGAGGT+TGG | 0.516800 | 7_1:+50986823 | Msa1023380:CDS |
| ATGAAGAGACATCATCATCA+AGG | 0.520342 | 7_1:+50984999 | Msa1023380:CDS |
| CAGCTTCCATCATCCTTCTC+CGG | 0.525212 | 7_1:-50986333 | None:intergenic |
| GGAGAAGGCTCTCCTTTGTT+CGG | 0.529112 | 7_1:-50986774 | None:intergenic |
| TCAAGGGAATTTGAGTCCAA+TGG | 0.531644 | 7_1:+50985157 | Msa1023380:CDS |
| GCAAGAATTCATCAAGAGAA+AGG | 0.533652 | 7_1:+50986581 | Msa1023380:CDS |
| GATGAATAGTTTAGCTTCGC+CGG | 0.534341 | 7_1:+50986314 | Msa1023380:CDS |
| GAAGCTATTGATTGAGAAAG+CGG | 0.535570 | 7_1:-50985523 | None:intergenic |
| ATGCCAGTTAGTGCAAAATC+CGG | 0.539511 | 7_1:+50985985 | Msa1023380:CDS |
| ATCACTATAAAGGAAAAGAA+AGG | 0.540627 | 7_1:-50987494 | None:intergenic |
| ATATATTTCACTTCCTGAGG+AGG | 0.541445 | 7_1:+50985588 | Msa1023380:CDS |
| AAACACCCTGGATATGAGTA+AGG | 0.542216 | 7_1:+50987300 | Msa1023380:CDS |
| ATCATATATTTCACTTCCTG+AGG | 0.551540 | 7_1:+50985585 | Msa1023380:CDS |
| AGTTGAAATTTCTCAAGGTG+AGG | 0.553244 | 7_1:-50986897 | None:intergenic |
| AGATTCAAATATCAATGGAC+CGG | 0.553999 | 7_1:-50986004 | None:intergenic |
| TAGTTCCTTACTCATATCCA+GGG | 0.556475 | 7_1:-50987305 | None:intergenic |
| TTCTGAAGAAGAAGCAAGAT+CGG | 0.558134 | 7_1:-50985671 | None:intergenic |
| AGAAGTTTAAGTTTCAAGGA+GGG | 0.560404 | 7_1:+50985937 | Msa1023380:CDS |
| CAATGAAACCAAGTTAAGGA+TGG | 0.567602 | 7_1:+50985384 | Msa1023380:CDS |
| AATTTGGAGCCATTGAAGGA+AGG | 0.569729 | 7_1:+50987190 | Msa1023380:CDS |
| AAATATATGATGAGCCACTC+AGG | 0.573287 | 7_1:-50985573 | None:intergenic |
| AAAGATAAAGGTGTGTCAGT+TGG | 0.576688 | 7_1:+50985334 | Msa1023380:CDS |
| ATTGGAGAAATATTTCACAT+TGG | 0.578504 | 7_1:-50987466 | None:intergenic |
| AGTAGTTGAGGAGAGTAAGT+AGG | 0.583139 | 7_1:+50987442 | Msa1023380:three_prime_UTR |
| GAGTAAGGAACTAAATTCCA+AGG | 0.585371 | 7_1:+50987315 | Msa1023380:CDS |
| AGAGCACAGAATGAAATCAA+GGG | 0.585380 | 7_1:+50985141 | Msa1023380:CDS |
| TTTCTCTTGATGAATTCTTG+CGG | 0.587979 | 7_1:-50986579 | None:intergenic |
| TTGATCACAAAATGAAACAA+TGG | 0.590971 | 7_1:-50986264 | None:intergenic |
| CCAAGTTAAGGATGGATCAG+TGG | 0.592342 | 7_1:+50985392 | Msa1023380:CDS |
| TGGCATTGGAGTTGATCAGC+CGG | 0.594233 | 7_1:+50986548 | Msa1023380:CDS |
| CATCGATGAATCAACGGAGA+AGG | 0.596877 | 7_1:-50986789 | None:intergenic |
| GGCGAAGCATGTAAGCCACC+TGG | 0.597285 | 7_1:-50986753 | None:intergenic |
| AAATCAGAAAATCGGCGCAA+AGG | 0.598918 | 7_1:+50984688 | Msa1023380:CDS |
| TTACATGCTTCGCCGAACAA+AGG | 0.601458 | 7_1:+50986762 | Msa1023380:CDS |
| TCAGAACGTTTGAGATAACC+TGG | 0.607632 | 7_1:-50984875 | None:intergenic |
| TCAAAGGACAGAAACTTCAA+GGG | 0.609667 | 7_1:+50986495 | Msa1023380:CDS |
| ACTCTATCAACAGGAGAGAG+TGG | 0.611352 | 7_1:-50987370 | None:intergenic |
| AGGATCTAATAACCTCATGA+AGG | 0.612100 | 7_1:-50986094 | None:intergenic |
| GTTAAGGATGGATCAGTGGA+AGG | 0.614791 | 7_1:+50985396 | Msa1023380:CDS |
| TAGAAGTTTAAGTTTCAAGG+AGG | 0.616245 | 7_1:+50985936 | Msa1023380:CDS |
| AAGCAAGATCGGTCGCAGAA+GGG | 0.617306 | 7_1:-50985660 | None:intergenic |
| TGAAGAGACATCATCATCAA+GGG | 0.624031 | 7_1:+50985000 | Msa1023380:CDS |
| CTTCTCCGTTGATTCATCGA+TGG | 0.624117 | 7_1:+50986790 | Msa1023380:CDS |
| AATTTCCATCGATGAATCAA+CGG | 0.624259 | 7_1:-50986795 | None:intergenic |
| TTATTGTATTAATTGTACAA+AGG | 0.627039 | 7_1:+50987543 | Msa1023380:three_prime_UTR |
| GATGAAGCTATAAGCATGCA+GGG | 0.633512 | 7_1:+50985232 | Msa1023380:CDS |
| GAAAGCAGTTTGACACCGAT+AGG | 0.633974 | 7_1:+50986159 | Msa1023380:CDS |
| TATGTATATCTAAGTAGTTG+AGG | 0.638934 | 7_1:+50987430 | Msa1023380:three_prime_UTR |
| ATTCATCGATGGAAATTGGG+CGG | 0.644473 | 7_1:+50986801 | Msa1023380:CDS |
| CAAGAAACTACCAAACACCC+TGG | 0.657879 | 7_1:+50987288 | Msa1023380:CDS |
| AAGTTCAACAACGCAACATG+AGG | 0.658263 | 7_1:+50984826 | Msa1023380:CDS |
| ACATATCAAGCACCTTCATG+AGG | 0.665636 | 7_1:+50986082 | Msa1023380:CDS |
| CTATCAACAGGAGAGAGTGG+TGG | 0.667905 | 7_1:-50987367 | None:intergenic |
| ATTACAGTTATACTTCCAGG+TGG | 0.686522 | 7_1:+50986738 | Msa1023380:CDS |
| AGCTTCGGCTTGAATCGGGT+AGG | 0.687981 | 7_1:+50985913 | Msa1023380:CDS |
| TGGAACAAAGAAAAGAACTG+TGG | 0.688657 | 7_1:+50986417 | Msa1023380:CDS |
| AGCAGTTGAAGATGATGCTG+TGG | 0.698853 | 7_1:-50985026 | None:intergenic |
| TTGGGCGGAATATGTGACTG+TGG | 0.706229 | 7_1:+50986816 | Msa1023380:CDS |
| GGCGGAATATGTGACTGTGG+AGG | 0.738963 | 7_1:+50986819 | Msa1023380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTGTATTAATTGTACAA+AGG | + | chr7_1:50987543-50987562 | Msa1023380:three_prime_UTR | 15.0% |
| !!! | AAAAAGCTTGATGATAAAAA+AGG | + | chr7_1:50985058-50985077 | Msa1023380:CDS | 20.0% |
| !! | TTGCAACTAACAATAAAAAA+TGG | + | chr7_1:50986237-50986256 | Msa1023380:CDS | 20.0% |
| !! | TCTGTAATCATAAAATATTC+TGG | + | chr7_1:50987047-50987066 | Msa1023380:intron | 20.0% |
| !! | TCATCTTTGTAATAAATTTC+AGG | + | chr7_1:50987138-50987157 | Msa1023380:intron | 20.0% |
| !! | AGACTATATAATCACTATAA+AGG | - | chr7_1:50987507-50987526 | None:intergenic | 20.0% |
| ! | GATAAAGCAAATCAGAAAAT+CGG | + | chr7_1:50984680-50984699 | Msa1023380:CDS | 25.0% |
| ! | AAACCACAAATTGATACATT+AGG | + | chr7_1:50984773-50984792 | Msa1023380:CDS | 25.0% |
| ! | AATCACTTCAAAAAGAGAAA+AGG | + | chr7_1:50985197-50985216 | Msa1023380:CDS | 25.0% |
| !!! | AGAATGTTTTTGATCAACAT+CGG | - | chr7_1:50985431-50985450 | None:intergenic | 25.0% |
| !!! | TGAAAGTATCTCTATTAGAT+TGG | - | chr7_1:50985789-50985808 | None:intergenic | 25.0% |
| ! | TAGAGATACTTTCATTGAAA+AGG | + | chr7_1:50985795-50985814 | Msa1023380:CDS | 25.0% |
| ! | GAAGAAGATTCAAATATCAA+TGG | - | chr7_1:50986012-50986031 | None:intergenic | 25.0% |
| ! | CAATTCTAGCAAAGATAATA+AGG | + | chr7_1:50986041-50986060 | Msa1023380:CDS | 25.0% |
| ! | TTGATCACAAAATGAAACAA+TGG | - | chr7_1:50986267-50986286 | None:intergenic | 25.0% |
| !! | TTTTCTTGATTTCATCAAGA+AGG | - | chr7_1:50986374-50986393 | None:intergenic | 25.0% |
| !! | AGTTAACATCATTTTCACAA+GGG | - | chr7_1:50986632-50986651 | None:intergenic | 25.0% |
| !! | AAGTTAACATCATTTTCACA+AGG | - | chr7_1:50986633-50986652 | None:intergenic | 25.0% |
| ! | CAAAAAGTTGAAATTTCTCA+AGG | - | chr7_1:50986905-50986924 | None:intergenic | 25.0% |
| !! | GAAATTTCAACTTTTTGTTC+AGG | + | chr7_1:50986908-50986927 | Msa1023380:CDS | 25.0% |
| ! | CTTTGTAATAAATTTCAGGA+AGG | + | chr7_1:50987142-50987161 | Msa1023380:intron | 25.0% |
| !!! | ATATTTATTTGCTATCTCCT+TGG | - | chr7_1:50987335-50987354 | None:intergenic | 25.0% |
| ! | TATGTATATCTAAGTAGTTG+AGG | + | chr7_1:50987430-50987449 | Msa1023380:three_prime_UTR | 25.0% |
| ! | ATTGGAGAAATATTTCACAT+TGG | - | chr7_1:50987469-50987488 | None:intergenic | 25.0% |
| ! | ATCACTATAAAGGAAAAGAA+AGG | - | chr7_1:50987497-50987516 | None:intergenic | 25.0% |
| !! | TGATTTGCTTTATCTTTCTG+AGG | - | chr7_1:50984674-50984693 | None:intergenic | 30.0% |
| TCTCCTAATGTATCAATTTG+TGG | - | chr7_1:50984779-50984798 | None:intergenic | 30.0% | |
| AAGAAAAAACATCCAAGAGA+AGG | + | chr7_1:50984904-50984923 | Msa1023380:CDS | 30.0% | |
| !! | CAAGAGAAGGCTTTAAATTT+CGG | + | chr7_1:50984917-50984936 | Msa1023380:CDS | 30.0% |
| !! | TAAATTTCGGTGTTCTTGAT+TGG | + | chr7_1:50984930-50984949 | Msa1023380:CDS | 30.0% |
| ! | CTTCATTGCTATTGAACAAT+TGG | - | chr7_1:50984985-50985004 | None:intergenic | 30.0% |
| ! | CTCTAACTGAATTTTTCCAT+TGG | - | chr7_1:50985176-50985195 | None:intergenic | 30.0% |
| !!! | GACTTCTCTCTTTTTTCTTA+AGG | - | chr7_1:50985273-50985292 | None:intergenic | 30.0% |
| AAAGAGAGAAGTCTTAATTC+CGG | + | chr7_1:50985280-50985299 | Msa1023380:CDS | 30.0% | |
| ! | CCTTTATCTTTTCGTTCTAA+CGG | - | chr7_1:50985325-50985344 | None:intergenic | 30.0% |
| ATCATATATTTCACTTCCTG+AGG | + | chr7_1:50985585-50985604 | Msa1023380:CDS | 30.0% | |
| CTAAGAAATCAATGTTCTAC+TGG | + | chr7_1:50985835-50985854 | Msa1023380:CDS | 30.0% | |
| ! | AGGTAGAAGTTTAAGTTTCA+AGG | + | chr7_1:50985933-50985952 | Msa1023380:CDS | 30.0% |
| ! | TAGAAGTTTAAGTTTCAAGG+AGG | + | chr7_1:50985936-50985955 | Msa1023380:CDS | 30.0% |
| ! | AGAAGTTTAAGTTTCAAGGA+GGG | + | chr7_1:50985937-50985956 | Msa1023380:CDS | 30.0% |
| AGATTCAAATATCAATGGAC+CGG | - | chr7_1:50986007-50986026 | None:intergenic | 30.0% | |
| AGCAAAGATAATAAGGTGAA+TGG | + | chr7_1:50986048-50986067 | Msa1023380:CDS | 30.0% | |
| TGAGGTTATTAGATCCTATA+TGG | + | chr7_1:50986100-50986119 | Msa1023380:CDS | 30.0% | |
| ! | GATGCTTTATTCTTCCATAT+AGG | - | chr7_1:50986117-50986136 | None:intergenic | 30.0% |
| GATGAAATCAAGAAAAAGAG+CGG | + | chr7_1:50986378-50986397 | Msa1023380:CDS | 30.0% | |
| CATATGACCAGCAATATTAT+AGG | - | chr7_1:50986448-50986467 | None:intergenic | 30.0% | |
| CTCAAAAATCACTGAATCAA+AGG | + | chr7_1:50986479-50986498 | Msa1023380:CDS | 30.0% | |
| GTGAAAGATTATGTCCTATT+TGG | + | chr7_1:50986528-50986547 | Msa1023380:CDS | 30.0% | |
| TTTCTCTTGATGAATTCTTG+CGG | - | chr7_1:50986582-50986601 | None:intergenic | 30.0% | |
| !!! | AAAAGCATCTTTTATCTGCA+AGG | - | chr7_1:50986683-50986702 | None:intergenic | 30.0% |
| ! | CCAGAAATATCATTTTCTTG+TGG | - | chr7_1:50986711-50986730 | None:intergenic | 30.0% |
| CCACAAGAAAATGATATTTC+TGG | + | chr7_1:50986708-50986727 | Msa1023380:CDS | 30.0% | |
| AATTTCCATCGATGAATCAA+CGG | - | chr7_1:50986798-50986817 | None:intergenic | 30.0% | |
| TTGATTCATCGATGGAAATT+GGG | + | chr7_1:50986798-50986817 | Msa1023380:CDS | 30.0% | |
| AATAAGCTGAAAACAGCTTA+TGG | + | chr7_1:50987082-50987101 | Msa1023380:intron | 30.0% | |
| GTACTTTAAACTCTATCAAC+AGG | - | chr7_1:50987382-50987401 | None:intergenic | 30.0% | |
| TACATAACAGATAGCTATGA+TGG | - | chr7_1:50987416-50987435 | None:intergenic | 30.0% | |
| AGGAAAAGAAAGGAAGTAAT+TGG | - | chr7_1:50987487-50987506 | None:intergenic | 30.0% | |
| TATCTCAAACGTTCTGATAG+AGG | + | chr7_1:50984881-50984900 | Msa1023380:CDS | 35.0% | |
| ! | CGAAATTTAAAGCCTTCTCT+TGG | - | chr7_1:50984919-50984938 | None:intergenic | 35.0% |
| ATGAAGAGACATCATCATCA+AGG | + | chr7_1:50984999-50985018 | Msa1023380:CDS | 35.0% | |
| TGAAGAGACATCATCATCAA+GGG | + | chr7_1:50985000-50985019 | Msa1023380:CDS | 35.0% | |
| GTTAAACAACGTCGAAATTC+TGG | + | chr7_1:50985100-50985119 | Msa1023380:CDS | 35.0% | |
| AGAGCACAGAATGAAATCAA+GGG | + | chr7_1:50985141-50985160 | Msa1023380:CDS | 35.0% | |
| !! | TGGAAGTCGATTTTCAAAAC+CGG | - | chr7_1:50985302-50985321 | None:intergenic | 35.0% |
| ! | TTATCTTTTCGTTCTAACGG+TGG | - | chr7_1:50985322-50985341 | None:intergenic | 35.0% |
| CCGTTAGAACGAAAAGATAA+AGG | + | chr7_1:50985322-50985341 | Msa1023380:CDS | 35.0% | |
| ! | AAAGATAAAGGTGTGTCAGT+TGG | + | chr7_1:50985334-50985353 | Msa1023380:CDS | 35.0% |
| TAACTTGGTTTCATTGCTTC+TGG | - | chr7_1:50985380-50985399 | None:intergenic | 35.0% | |
| GAAGCAATGAAACCAAGTTA+AGG | + | chr7_1:50985380-50985399 | Msa1023380:CDS | 35.0% | |
| CAATGAAACCAAGTTAAGGA+TGG | + | chr7_1:50985384-50985403 | Msa1023380:CDS | 35.0% | |
| ! | TTCGACTGCAGAAATTTTCT+CGG | - | chr7_1:50985487-50985506 | None:intergenic | 35.0% |
| ! | GAAGCTATTGATTGAGAAAG+CGG | - | chr7_1:50985526-50985545 | None:intergenic | 35.0% |
| AAATATATGATGAGCCACTC+AGG | - | chr7_1:50985576-50985595 | None:intergenic | 35.0% | |
| ATATATTTCACTTCCTGAGG+AGG | + | chr7_1:50985588-50985607 | Msa1023380:CDS | 35.0% | |
| ! | TTCTGAAGAAGAAGCAAGAT+CGG | - | chr7_1:50985674-50985693 | None:intergenic | 35.0% |
| AGGATCTAATAACCTCATGA+AGG | - | chr7_1:50986097-50986116 | None:intergenic | 35.0% | |
| TTCGAAAGCTCGTTGAATTT+GGG | - | chr7_1:50986188-50986207 | None:intergenic | 35.0% | |
| AACGAGCTTTCGAACAAATA+AGG | + | chr7_1:50986194-50986213 | Msa1023380:CDS | 35.0% | |
| TGTGATCAACAGTGAAAGAA+AGG | + | chr7_1:50986278-50986297 | Msa1023380:CDS | 35.0% | |
| ! | AGTTCTTTTCTTTGTTCCAG+TGG | - | chr7_1:50986416-50986435 | None:intergenic | 35.0% |
| TGGAACAAAGAAAAGAACTG+TGG | + | chr7_1:50986417-50986436 | Msa1023380:CDS | 35.0% | |
| GGATATGCCTATAATATTGC+TGG | + | chr7_1:50986438-50986457 | Msa1023380:CDS | 35.0% | |
| ATCAAAGGACAGAAACTTCA+AGG | + | chr7_1:50986494-50986513 | Msa1023380:CDS | 35.0% | |
| TCAAAGGACAGAAACTTCAA+GGG | + | chr7_1:50986495-50986514 | Msa1023380:CDS | 35.0% | |
| GATTATGTCCTATTTGGCAT+TGG | + | chr7_1:50986534-50986553 | Msa1023380:CDS | 35.0% | |
| GCAAGAATTCATCAAGAGAA+AGG | + | chr7_1:50986581-50986600 | Msa1023380:CDS | 35.0% | |
| !! | TGATGTTAACTTGCTGAAGA+AGG | + | chr7_1:50986641-50986660 | Msa1023380:CDS | 35.0% |
| AGCATTACAGTTATACTTCC+AGG | + | chr7_1:50986735-50986754 | Msa1023380:CDS | 35.0% | |
| ATTACAGTTATACTTCCAGG+TGG | + | chr7_1:50986738-50986757 | Msa1023380:CDS | 35.0% | |
| ! | GTTGATTCATCGATGGAAAT+TGG | + | chr7_1:50986797-50986816 | Msa1023380:CDS | 35.0% |
| AGTTGAAATTTCTCAAGGTG+AGG | - | chr7_1:50986900-50986919 | None:intergenic | 35.0% | |
| ! | CTTTTCTGTCAAGTCAAGTT+TGG | + | chr7_1:50986948-50986967 | Msa1023380:intron | 35.0% |
| !! | AGACACAGCCTTATTCAATT+TGG | + | chr7_1:50987174-50987193 | Msa1023380:CDS | 35.0% |
| CAATGGCTCCAAATTGAATA+AGG | - | chr7_1:50987185-50987204 | None:intergenic | 35.0% | |
| ! | ATTCAATTTGGAGCCATTGA+AGG | + | chr7_1:50987186-50987205 | Msa1023380:CDS | 35.0% |
| TAGTTCCTTACTCATATCCA+GGG | - | chr7_1:50987308-50987327 | None:intergenic | 35.0% | |
| TTAGTTCCTTACTCATATCC+AGG | - | chr7_1:50987309-50987328 | None:intergenic | 35.0% | |
| GAGTAAGGAACTAAATTCCA+AGG | + | chr7_1:50987315-50987334 | Msa1023380:CDS | 35.0% | |
| CTGAGGTCTCAAGTCTATAT+CGG | - | chr7_1:50984657-50984676 | None:intergenic | 40.0% | |
| AAATCAGAAAATCGGCGCAA+AGG | + | chr7_1:50984688-50984707 | Msa1023380:CDS | 40.0% | |
| AAGTTCAACAACGCAACATG+AGG | + | chr7_1:50984826-50984845 | Msa1023380:CDS | 40.0% | |
| ! | AAGCACATGTCTAATTTGCC+AGG | + | chr7_1:50984857-50984876 | Msa1023380:CDS | 40.0% |
| ! | TCAGAACGTTTGAGATAACC+TGG | - | chr7_1:50984878-50984897 | None:intergenic | 40.0% |
| CATCATCTTCAACTGCTAGA+AGG | + | chr7_1:50985032-50985051 | Msa1023380:CDS | 40.0% | |
| ! | GAGAGCACAGAATGAAATCA+AGG | + | chr7_1:50985140-50985159 | Msa1023380:CDS | 40.0% |
| TCAAGGGAATTTGAGTCCAA+TGG | + | chr7_1:50985157-50985176 | Msa1023380:CDS | 40.0% | |
| GATGAAGCTATAAGCATGCA+GGG | + | chr7_1:50985232-50985251 | Msa1023380:CDS | 40.0% | |
| ! | TCTGGAACTCACTTTCTTCT+CGG | - | chr7_1:50985362-50985381 | None:intergenic | 40.0% |
| CGAAGCAAAACAATGTCTCT+TGG | - | chr7_1:50985463-50985482 | None:intergenic | 40.0% | |
| ! | TTTTCAGAATCAAGCCTGAG+TGG | + | chr7_1:50985559-50985578 | Msa1023380:CDS | 40.0% |
| !! | CTATTTCTGTCACTCTCAGT+TGG | - | chr7_1:50985874-50985893 | None:intergenic | 40.0% |
| TCTGAAAGTCAGCTTAGCTT+CGG | + | chr7_1:50985898-50985917 | Msa1023380:CDS | 40.0% | |
| !!! | GAGCTTTGTTTTGGAATGGT+AGG | - | chr7_1:50985964-50985983 | None:intergenic | 40.0% |
| !!! | CATGGAGCTTTGTTTTGGAA+TGG | - | chr7_1:50985968-50985987 | None:intergenic | 40.0% |
| ATGCCAGTTAGTGCAAAATC+CGG | + | chr7_1:50985985-50986004 | Msa1023380:CDS | 40.0% | |
| ACATATCAAGCACCTTCATG+AGG | + | chr7_1:50986082-50986101 | Msa1023380:CDS | 40.0% | |
| TCAAACTGCTTTCGGATGAA+TGG | - | chr7_1:50986152-50986171 | None:intergenic | 40.0% | |
| !! | TATCGGTGTCAAACTGCTTT+CGG | - | chr7_1:50986160-50986179 | None:intergenic | 40.0% |
| GTTGAATTTGGGCTACCTAT+CGG | - | chr7_1:50986177-50986196 | None:intergenic | 40.0% | |
| GTTCGAAAGCTCGTTGAATT+TGG | - | chr7_1:50986189-50986208 | None:intergenic | 40.0% | |
| ! | GATGAATAGTTTAGCTTCGC+CGG | + | chr7_1:50986314-50986333 | Msa1023380:CDS | 40.0% |
| TCAAGAAAAAGAGCGGTAGA+TGG | + | chr7_1:50986385-50986404 | Msa1023380:CDS | 40.0% | |
| AAACTTCAAGGGACAGTGTA+TGG | + | chr7_1:50986506-50986525 | Msa1023380:CDS | 40.0% | |
| GATCAACTCCAATGCCAAAT+AGG | - | chr7_1:50986545-50986564 | None:intergenic | 40.0% | |
| ATTCATCGATGGAAATTGGG+CGG | + | chr7_1:50986801-50986820 | Msa1023380:CDS | 40.0% | |
| AATATGTGACTGTGGAGGTT+GGG | + | chr7_1:50986824-50986843 | Msa1023380:CDS | 40.0% | |
| ! | AATTTGGAGCCATTGAAGGA+AGG | + | chr7_1:50987190-50987209 | Msa1023380:CDS | 40.0% |
| GAGTAGAATCCTTCCTTCAA+TGG | - | chr7_1:50987202-50987221 | None:intergenic | 40.0% | |
| ! | TTACTCATATCCAGGGTGTT+TGG | - | chr7_1:50987301-50987320 | None:intergenic | 40.0% |
| AAACACCCTGGATATGAGTA+AGG | + | chr7_1:50987300-50987319 | Msa1023380:CDS | 40.0% | |
| AGTAGTTGAGGAGAGTAAGT+AGG | + | chr7_1:50987442-50987461 | Msa1023380:three_prime_UTR | 40.0% | |
| CAAAGGCAGTTATGCAGTCT+AGG | + | chr7_1:50984705-50984724 | Msa1023380:CDS | 45.0% | |
| ATTGGTCGCAGCTCGAAAAA+TGG | + | chr7_1:50984948-50984967 | Msa1023380:CDS | 45.0% | |
| AGCAGTTGAAGATGATGCTG+TGG | - | chr7_1:50985029-50985048 | None:intergenic | 45.0% | |
| CGATGAAGCTATAAGCATGC+AGG | + | chr7_1:50985231-50985250 | Msa1023380:CDS | 45.0% | |
| CCACTGATCCATCCTTAACT+TGG | - | chr7_1:50985395-50985414 | None:intergenic | 45.0% | |
| CCAAGTTAAGGATGGATCAG+TGG | + | chr7_1:50985392-50985411 | Msa1023380:CDS | 45.0% | |
| GTTAAGGATGGATCAGTGGA+AGG | + | chr7_1:50985396-50985415 | Msa1023380:CDS | 45.0% | |
| ! | TTTTCAGTGTAAGCCTCCTC+AGG | - | chr7_1:50985604-50985623 | None:intergenic | 45.0% |
| GACATCTTATTCGAGCGATC+AGG | - | chr7_1:50985760-50985779 | None:intergenic | 45.0% | |
| ! | AGCTTAGCTTCGGCTTGAAT+CGG | + | chr7_1:50985908-50985927 | Msa1023380:CDS | 45.0% |
| !!! | ACTGGCATGGAGCTTTGTTT+TGG | - | chr7_1:50985973-50985992 | None:intergenic | 45.0% |
| ! | GGATTTTGCACTAACTGGCA+TGG | - | chr7_1:50985986-50986005 | None:intergenic | 45.0% |
| GAAAGCAGTTTGACACCGAT+AGG | + | chr7_1:50986159-50986178 | Msa1023380:CDS | 45.0% | |
| AATTCTTGCGGTCGTTGATC+CGG | - | chr7_1:50986570-50986589 | None:intergenic | 45.0% | |
| TTACATGCTTCGCCGAACAA+AGG | + | chr7_1:50986762-50986781 | Msa1023380:CDS | 45.0% | |
| CATCGATGAATCAACGGAGA+AGG | - | chr7_1:50986792-50986811 | None:intergenic | 45.0% | |
| !! | CTTCTCCGTTGATTCATCGA+TGG | + | chr7_1:50986790-50986809 | Msa1023380:CDS | 45.0% |
| GAATATGTGACTGTGGAGGT+TGG | + | chr7_1:50986823-50986842 | Msa1023380:CDS | 45.0% | |
| !!! | GAGGTTTTGAACTCAGGTTC+TGG | - | chr7_1:50986881-50986900 | None:intergenic | 45.0% |
| !!! | CAAGGTGAGGTTTTGAACTC+AGG | - | chr7_1:50986887-50986906 | None:intergenic | 45.0% |
| CAAGAAACTACCAAACACCC+TGG | + | chr7_1:50987288-50987307 | Msa1023380:CDS | 45.0% | |
| ACTCTATCAACAGGAGAGAG+TGG | - | chr7_1:50987373-50987392 | None:intergenic | 45.0% | |
| AAGCAAGATCGGTCGCAGAA+GGG | - | chr7_1:50985663-50985682 | None:intergenic | 50.0% | |
| ! | GCTTAGCTTCGGCTTGAATC+GGG | + | chr7_1:50985909-50985928 | Msa1023380:CDS | 50.0% |
| ! | GGACCGGATTTTGCACTAAC+TGG | - | chr7_1:50985991-50986010 | None:intergenic | 50.0% |
| ! | TAGTTTAGCTTCGCCGGAGA+AGG | + | chr7_1:50986320-50986339 | Msa1023380:CDS | 50.0% |
| CAGCTTCCATCATCCTTCTC+CGG | - | chr7_1:50986336-50986355 | None:intergenic | 50.0% | |
| ! | TGGCATTGGAGTTGATCAGC+CGG | + | chr7_1:50986548-50986567 | Msa1023380:CDS | 50.0% |
| GGAGAAGGCTCTCCTTTGTT+CGG | - | chr7_1:50986777-50986796 | None:intergenic | 50.0% | |
| TTGGGCGGAATATGTGACTG+TGG | + | chr7_1:50986816-50986835 | Msa1023380:CDS | 50.0% | |
| CTATCAACAGGAGAGAGTGG+TGG | - | chr7_1:50987370-50987389 | None:intergenic | 50.0% | |
| GAAGCAAGATCGGTCGCAGA+AGG | - | chr7_1:50985664-50985683 | None:intergenic | 55.0% | |
| ! | AGCTTCGGCTTGAATCGGGT+AGG | + | chr7_1:50985913-50985932 | Msa1023380:CDS | 55.0% |
| GGCGGAATATGTGACTGTGG+AGG | + | chr7_1:50986819-50986838 | Msa1023380:CDS | 55.0% | |
| GACTGTGGAGGTTGGGATGT+TGG | + | chr7_1:50986831-50986850 | Msa1023380:CDS | 55.0% | |
| GCTTCGCCGGAGAAGGATGA+TGG | + | chr7_1:50986327-50986346 | Msa1023380:CDS | 60.0% | |
| GGCGAAGCATGTAAGCCACC+TGG | - | chr7_1:50986756-50986775 | None:intergenic | 60.0% | |
| GCGGTAGATGGACGAGCCAC+TGG | + | chr7_1:50986397-50986416 | Msa1023380:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 50984647 | 50987574 | 50984647 | ID=Msa1023380;Name=Msa1023380 |
| chr7_1 | mRNA | 50984647 | 50987574 | 50984647 | ID=Msa1023380-mRNA-1;Parent=Msa1023380;Name=Msa1023380-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.5|1|1|1|2|178|839 |
| chr7_1 | exon | 50984647 | 50986929 | 50984647 | ID=Msa1023380-mRNA-1:exon:9982;Parent=Msa1023380-mRNA-1 |
| chr7_1 | exon | 50987160 | 50987574 | 50987160 | ID=Msa1023380-mRNA-1:exon:9983;Parent=Msa1023380-mRNA-1 |
| chr7_1 | CDS | 50984647 | 50986929 | 50984647 | ID=Msa1023380-mRNA-1:cds;Parent=Msa1023380-mRNA-1 |
| chr7_1 | CDS | 50987160 | 50987396 | 50987160 | ID=Msa1023380-mRNA-1:cds;Parent=Msa1023380-mRNA-1 |
| chr7_1 | three_prime_UTR | 50987397 | 50987574 | 50987397 | ID=Msa1023380-mRNA-1:three_prime_utr;Parent=Msa1023380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
