AlfalfaGEDB | Msa1027450

M. sativa cultivar zhongmu-4 / Msa1027450

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044232 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827
PFAM: PF17047.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1027450	XP_003623798.2	96.190	525	9	1	1	525	1	514	0.0	1008

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1027450	sp\|Q9LEX1\|CLB_ARATH	75.143	523	116	2	1	523	1	509	0.0	745

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1027450	G7L1E7	96.190	525	9	1	1	525	1	514	0.0	1008

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1027450	Msa1065880	0.840126	1.048976e-57	-8.615850e-47
Msa1027450	Msa1154890	0.983853	6.865245e-159	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1027450	MtrunA17_Chr7g0246311	96.190	525	9	1	1	525	1	514	0.0	1008
Msa1027450	MtrunA17_Chr8g0351231	81.298	524	84	3	1	523	1	511	0.0	791
Msa1027450	MtrunA17_Chr4g0064531	37.037	405	243	8	15	413	15	413	3.56e-85	274
Msa1027450	MtrunA17_Chr4g0064531	41.346	104	58	2	262	362	440	543	4.37e-15	78.2
Msa1027450	MtrunA17_Chr3g0137471	33.409	443	232	12	17	417	17	438	5.94e-68	229
Msa1027450	MtrunA17_Chr3g0137471	37.000	100	60	2	262	358	465	564	4.61e-12	68.6
Msa1027450	MtrunA17_Chr1g0199571	34.074	405	246	12	4	397	3	397	5.04e-63	215
Msa1027450	MtrunA17_Chr1g0156811	32.945	343	219	6	58	395	59	395	4.12e-54	191
Msa1027450	MtrunA17_Chr4g0037111	34.437	302	185	7	38	333	38	332	3.10e-53	183
Msa1027450	MtrunA17_Chr2g0313621	25.676	296	196	11	68	343	74	365	8.65e-13	71.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1027450	AT3G61050.2	75.143	523	116	2	1	523	1	509	0.0	745
Msa1027450	AT3G61050.1	75.143	523	116	2	1	523	1	509	0.0	745
Msa1027450	AT3G61030.1	60.807	347	70	8	18	364	1	281	2.50e-127	381
Msa1027450	AT3G60950.1	59.654	347	81	6	18	364	1	288	2.41e-124	378
Msa1027450	AT1G05500.1	40.863	394	221	8	1	388	1	388	1.05e-97	307
Msa1027450	AT1G05500.1	37.113	97	60	1	262	357	434	530	2.03e-12	70.1
Msa1027450	AT5G04220.2	35.813	363	209	9	61	416	62	407	1.71e-66	224
Msa1027450	AT5G04220.3	35.933	359	206	9	65	416	4	345	1.79e-65	220
Msa1027450	AT1G05500.2	42.000	250	134	7	144	388	1	244	8.16e-57	195
Msa1027450	AT1G05500.2	37.113	97	60	1	262	357	290	386	2.55e-12	69.3

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Find 157 sgRNAs with CRISPR-Local

Find 496 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGCCACTTATTAACC+TGG	0.583892	7_1:+59871996	Msa1027450:CDS
AAACCTCGACAGTGAGTGAC+TGG	0.457183	7_1:-59871393	None:intergenic
AAAGGTTACCTCAGCAAGTA+GGG	0.517219	7_1:-59870095	None:intergenic
AACAACAACAGCAGAAATGC+AGG	0.446070	7_1:-59870071	None:intergenic
AACCTCGACAGTGAGTGACT+GGG	0.624024	7_1:-59871392	None:intergenic
AACTTCAACGAAGAAATTCC+AGG	0.459075	7_1:-59868591	None:intergenic
AAGCCGCAAGAGAATTGCTA+AGG	0.617810	7_1:+59865486	Msa1027450:CDS
AAGTTCAGTAAGCTGTCCCT+TGG	0.527726	7_1:+59868609	Msa1027450:CDS
AATCGGCGCTGGAGCTGGAA+TGG	0.499597	7_1:+59872563	Msa1027450:CDS
AATGGACATTGATTTCCGTT+GGG	0.469120	7_1:+59869844	Msa1027450:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGATTGGAATTTGGGAAAAT+GGG	+	chr7_1:59865385-59865404	Msa1027450:exon	30.0%
TATCATGCTTAGTGTTTGTT+TGG	+	chr7_1:59865622-59865641	Msa1027450:intron	30.0%
AACTATGTTTGGTATTATGG+TGG	-	chr7_1:59865742-59865761	None:intergenic	30.0%
TACACTCTATGAACTATGTT+TGG	-	chr7_1:59865753-59865772	None:intergenic	30.0%
TAGTTCATAGAGTGTATGTT+TGG	+	chr7_1:59865757-59865776	Msa1027450:intron	30.0%
ATCGATGTCCTCTATATATA+CGG	+	chr7_1:59866108-59866127	Msa1027450:intron	30.0%
TAATCATAATCACACACAGA+AGG	+	chr7_1:59866176-59866195	Msa1027450:intron	30.0%
AACAAAGTCTGAGAATTTGT+AGG	-	chr7_1:59866331-59866350	None:intergenic	30.0%
GAAGAAGACAAGAAAAACAA+GGG	+	chr7_1:59866513-59866532	Msa1027450:intron	30.0%
AATGAAAAGGGAAACATAGT+AGG	+	chr7_1:59866550-59866569	Msa1027450:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	59865262	59872990	59865262	ID=Msa1027450;Name=Msa1027450
chr7_1	mRNA	59865262	59872990	59865262	ID=Msa1027450-mRNA-1;Parent=Msa1027450;Name=Msa1027450-mRNA-1;_AED=0.05;_eAED=0.05;_QI=141\|1\|1\|1\|1\|1\|11\|178\|525
chr7_1	exon	59865262	59865507	59865262	ID=Msa1027450-mRNA-1:exon:12240;Parent=Msa1027450-mRNA-1
chr7_1	exon	59866718	59866819	59866718	ID=Msa1027450-mRNA-1:exon:12241;Parent=Msa1027450-mRNA-1
chr7_1	exon	59867058	59867108	59867058	ID=Msa1027450-mRNA-1:exon:12242;Parent=Msa1027450-mRNA-1
chr7_1	exon	59868534	59868654	59868534	ID=Msa1027450-mRNA-1:exon:12243;Parent=Msa1027450-mRNA-1
chr7_1	exon	59869807	59869925	59869807	ID=Msa1027450-mRNA-1:exon:12244;Parent=Msa1027450-mRNA-1
chr7_1	exon	59870010	59870108	59870010	ID=Msa1027450-mRNA-1:exon:12245;Parent=Msa1027450-mRNA-1
chr7_1	exon	59870646	59870726	59870646	ID=Msa1027450-mRNA-1:exon:12246;Parent=Msa1027450-mRNA-1
chr7_1	exon	59870822	59870907	59870822	ID=Msa1027450-mRNA-1:exon:12247;Parent=Msa1027450-mRNA-1
chr7_1	exon	59871186	59871411	59871186	ID=Msa1027450-mRNA-1:exon:12248;Parent=Msa1027450-mRNA-1
chr7_1	exon	59871952	59872116	59871952	ID=Msa1027450-mRNA-1:exon:12249;Parent=Msa1027450-mRNA-1
chr7_1	exon	59872390	59872990	59872390	ID=Msa1027450-mRNA-1:exon:12250;Parent=Msa1027450-mRNA-1
chr7_1	five_prime_UTR	59865262	59865402	59865262	ID=Msa1027450-mRNA-1:five_prime_utr;Parent=Msa1027450-mRNA-1
chr7_1	CDS	59865403	59865507	59865403	ID=Msa1027450-mRNA-1:cds;Parent=Msa1027450-mRNA-1
chr7_1	CDS	59866718	59866819	59866718	ID=Msa1027450-mRNA-1:cds;Parent=Msa1027450-mRNA-1
chr7_1	CDS	59867058	59867108	59867058	ID=Msa1027450-mRNA-1:cds;Parent=Msa1027450-mRNA-1
chr7_1	CDS	59868534	59868654	59868534	ID=Msa1027450-mRNA-1:cds;Parent=Msa1027450-mRNA-1
chr7_1	CDS	59869807	59869925	59869807	ID=Msa1027450-mRNA-1:cds;Parent=Msa1027450-mRNA-1
chr7_1	CDS	59870010	59870108	59870010	ID=Msa1027450-mRNA-1:cds;Parent=Msa1027450-mRNA-1
chr7_1	CDS	59870646	59870726	59870646	ID=Msa1027450-mRNA-1:cds;Parent=Msa1027450-mRNA-1
chr7_1	CDS	59870822	59870907	59870822	ID=Msa1027450-mRNA-1:cds;Parent=Msa1027450-mRNA-1
chr7_1	CDS	59871186	59871411	59871186	ID=Msa1027450-mRNA-1:cds;Parent=Msa1027450-mRNA-1
chr7_1	CDS	59871952	59872116	59871952	ID=Msa1027450-mRNA-1:cds;Parent=Msa1027450-mRNA-1
chr7_1	CDS	59872390	59872812	59872390	ID=Msa1027450-mRNA-1:cds;Parent=Msa1027450-mRNA-1
chr7_1	three_prime_UTR	59872813	59872990	59872813	ID=Msa1027450-mRNA-1:three_prime_utr;Parent=Msa1027450-mRNA-1

Gene Sequence

>Msa1027450

ATGGGTTTGTTCTTTGGGATTTTTCTGGGGGTGTTATTCGGCGTAGCATTGATGGCTGGATGGGAGAGAATGATGAGATACAGAAGCCGCAAGAGAATTGCTAAGGCAGTTGACGTTAAACTCCTTGGATCCCTGAATAGAGACGACTTAAAGAAAATTTGTGGTGAAAATTTACCTGAATGGATATCTTTCCCTGTATATGAGCAGGTGAAATGGCTAAACAAGCAGCTGTCCAAGTTGTGGCCATTTGTGGCGGATGCAGCAACTATGGTGATAAGAGAATCTGTTGAACCGCTATTAGAAGAGTATAGACCTCCTGGAATTTCTTCGTTGAAGTTCAGTAAGCTGTCCCTTGGAACTGTCGCTCCAAAAATTGAAGGCATTCGTGTTCAGAGTCTTAAAAAAGGTCAAATCATAATGGACATTGATTTCCGTTGGGGTGGTGATCCTAATATTGTTTTGGGTGTTGAAGCACTTGTTGCGTCAATTCCTATTCAGTTGAAGGATCTCCAGGTTTTCACCATTATCCGTGTTATATTCCAACTCGCAGAAGAGATCCCCTGCATTTCTGCTGTTGTTGTTGCCCTACTTGCTGAGCCAAAGCCTAGAATTGATTACACTCTGAAGGCAGTTGGTGGAAGTTTGACGGCACTTCCTGGACTTTCAGATATGATTGATGATACTGTGAACTCAATTGTTACCGATATGCTCCAATGGCCTCATCGGATTGTTGTTCCACTTGGTGGTACTCCTGTGGATACTAGTGATCTGGAGCTTAAACCCCAGGGAATACTTAAAGTGACTGTAATGAAAGCAAATGATCTAAAGAATATGGAAATGATTGGGAAGTCTGACCCTTACGTAGTTGTGCATATTCGACCACTCTTTAAAGTCAAAACAAAGGTTATTGATAACAACTTGAATCCAATTTGGAATGAGGAATTCGACTTGATTGCAGAAGACAAGGAGACCCAGTCACTCACTGTCGAGGTTTTTGATAAAGACATTGGGCAAGATAAACGATTGGGAGTAGCAAAATTGCCACTTATTAACCTGGAAGCAGAAACTGAAAAGGAAATTGAACTGAGGCTTCTGTCATCGCTTGATACATTGAAAGTAAAAGATAAGAAGGATCGAGGAACCTTGAGAATAAAGTATTTCTATCATGAATTTAACAAGGAAGAACAGATGGCTGCACTAGAAGCAGAAAAAATGACACTAGAACAAAGGAAGAAATTGAAAGAGGAAGGAGTTATTGGAAGTACAATGGACGCGCTAGACGGAGCAGCATCAGTAGTTGGTTCTGGTGCTGGACTCGTTGGAACTGGAATCGGCGCTGGAGCTGGAATGGTGGGAAGTGGAATTGGTGCTGGAGCTGGAATGGTGGGAAGTGGATTCGGTGCTGGAGCTGGAATTGTTGGCAGTGGGCTTGGTGCCGTTGGCAGTGGACTGAGCAAGGCAGGAAAGTTCATGGGCAGGACAATCACAGGGCAAACTGTATCGAGAAGGAGTGCCAGCGGTTCATCTACTCCTGTCTTTAATGTGGAGGAAAGTGGGGGTGGCGCAAAGCCACGGTAA

Protein sequence

>Msa1027450

MGLFFGIFLGVLFGVALMAGWERMMRYRSRKRIAKAVDVKLLGSLNRDDLKKICGENLPEWISFPVYEQVKWLNKQLSKLWPFVADAATMVIRESVEPLLEEYRPPGISSLKFSKLSLGTVAPKIEGIRVQSLKKGQIIMDIDFRWGGDPNIVLGVEALVASIPIQLKDLQVFTIIRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGLSDMIDDTVNSIVTDMLQWPHRIVVPLGGTPVDTSDLELKPQGILKVTVMKANDLKNMEMIGKSDPYVVVHIRPLFKVKTKVIDNNLNPIWNEEFDLIAEDKETQSLTVEVFDKDIGQDKRLGVAKLPLINLEAETEKEIELRLLSSLDTLKVKDKKDRGTLRIKYFYHEFNKEEQMAALEAEKMTLEQRKKLKEEGVIGSTMDALDGAASVVGSGAGLVGTGIGAGAGMVGSGIGAGAGMVGSGFGAGAGIVGSGLGAVGSGLSKAGKFMGRTITGQTVSRRSASGSSTPVFNVEESGGGAKPR*