AlfalfaGEDB | Msa1029290

M. sativa cultivar zhongmu-4 / Msa1029290

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1029290	AES80446.1	94.667	450	24	0	1	450	27	476	0.0	880

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1029290	sp\|Q9M219\|MTEFH_ARATH	47.100	431	220	2	22	450	24	448	7.85e-130	390

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1029290	G7KSF7	94.667	450	24	0	1	450	27	476	0.0	880

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TFs/TRs:

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Gene ID	Type	Classification
Msa1029290	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1029290	Msa1068170	0.878392	2.915337e-69	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1029290	MtrunA17_Chr7g0249711	94.667	450	24	0	1	450	27	476	0.0	875
Msa1029290	MtrunA17_Chr8g0335121	54.923	457	196	6	5	456	9	460	3.56e-171	493
Msa1029290	MtrunA17_Chr5g0438661	23.991	446	313	9	12	450	86	512	1.11e-26	113
Msa1029290	MtrunA17_Chr7g0258521	32.919	161	99	2	3	154	13	173	8.23e-20	92.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1029290	AT3G60400.1	47.100	431	220	2	22	450	24	448	7.98e-131	390
Msa1029290	AT4G19650.2	26.128	421	282	7	33	445	85	484	2.36e-36	142
Msa1029290	AT4G19650.1	24.561	399	272	7	55	445	90	467	1.49e-28	119
Msa1029290	AT5G06811.1	26.512	430	286	10	22	438	52	464	2.22e-27	115
Msa1029290	AT5G06810.1	23.438	448	304	11	7	438	44	468	1.72e-21	98.2

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Find 116 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCAATCGTCACCGAA+AGG	0.637920	7_1:+62702661	None:intergenic
AAAGACTGATCTCTAACACC+AGG	0.635849	7_1:+62700702	None:intergenic
AAAGACTTCAAATTCGTTAA+TGG	0.197617	7_1:+62704543	None:intergenic
AAATCAAGCTTCAACGCTTC+AGG	0.393972	7_1:+62703935	None:intergenic
AAATGTAGATTCATGGCATG+AGG	0.639289	7_1:-62704140	Msa1029290:CDS
AACACACCTAACTTCTCCCA+AGG	0.625967	7_1:+62704400	None:intergenic
AACGAACAAATCATAAAGCA+AGG	0.590562	7_1:+62701985	None:intergenic
AAGACTTCAAATTCGTTAAT+GGG	0.265361	7_1:+62704544	None:intergenic
AAGATTATCAAGATGGTTTG+AGG	0.456096	7_1:-62703676	Msa1029290:CDS
AAGTGATCGCAATGAAGACC+GGG	0.587085	7_1:-62703702	Msa1029290:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGACTTCAAATTCGTTAATG+GGG	+	chr7_1:62700707-62700726	None:intergenic	30.0%
CATAGGGATAGATTATACTT+TGG	-	chr7_1:62700737-62700756	Msa1029290:three_prime_UTR	30.0%
GAAAAGAACAGCTTATCATT+CGG	+	chr7_1:62700777-62700796	None:intergenic	30.0%
ATGGAGAAGAGTTCTATATT+TGG	-	chr7_1:62700876-62700895	Msa1029290:three_prime_UTR	30.0%
TGGAGAAGAGTTCTATATTT+GGG	-	chr7_1:62700877-62700896	Msa1029290:three_prime_UTR	30.0%
AAGATTATCAAGATGGTTTG+AGG	-	chr7_1:62701573-62701592	Msa1029290:intron	30.0%
TTCTTACATAGATTAGGCTT+TGG	-	chr7_1:62701644-62701663	Msa1029290:intron	30.0%
ATCTGTACCTAGGTATAATT+CGG	+	chr7_1:62701925-62701944	None:intergenic	30.0%
AGAGTAAGTATGATATGACT+AGG	+	chr7_1:62702129-62702148	None:intergenic	30.0%
AGCATTAAATGATGTGTCTT+TGG	+	chr7_1:62702281-62702300	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	62700435	62704836	62700435	ID=Msa1029290;Name=Msa1029290
chr7_1	mRNA	62700435	62704836	62700435	ID=Msa1029290-mRNA-1;Parent=Msa1029290;Name=Msa1029290-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0\|0.75\|0.6\|1\|0.5\|0.4\|5\|656\|480
chr7_1	exon	62700435	62700896	62700435	ID=Msa1029290-mRNA-1:exon:13508;Parent=Msa1029290-mRNA-1
chr7_1	exon	62701867	62702022	62701867	ID=Msa1029290-mRNA-1:exon:13507;Parent=Msa1029290-mRNA-1
chr7_1	exon	62702480	62702557	62702480	ID=Msa1029290-mRNA-1:exon:13506;Parent=Msa1029290-mRNA-1
chr7_1	exon	62702651	62702703	62702651	ID=Msa1029290-mRNA-1:exon:13505;Parent=Msa1029290-mRNA-1
chr7_1	exon	62703487	62704836	62703487	ID=Msa1029290-mRNA-1:exon:13504;Parent=Msa1029290-mRNA-1
chr7_1	CDS	62703487	62704836	62703487	ID=Msa1029290-mRNA-1:cds;Parent=Msa1029290-mRNA-1
chr7_1	CDS	62702651	62702703	62702651	ID=Msa1029290-mRNA-1:cds;Parent=Msa1029290-mRNA-1
chr7_1	CDS	62702518	62702557	62702518	ID=Msa1029290-mRNA-1:cds;Parent=Msa1029290-mRNA-1
chr7_1	three_prime_UTR	62702480	62702517	62702480	ID=Msa1029290-mRNA-1:three_prime_utr;Parent=Msa1029290-mRNA-1
chr7_1	three_prime_UTR	62701867	62702022	62701867	ID=Msa1029290-mRNA-1:three_prime_utr;Parent=Msa1029290-mRNA-1
chr7_1	three_prime_UTR	62700435	62700896	62700435	ID=Msa1029290-mRNA-1:three_prime_utr;Parent=Msa1029290-mRNA-1

Gene Sequence

>Msa1029290

ATGTTCTTCTTCCTCCACCGCCATTTTTCCACCACCACAAAAACCAACTTCCCAAACCTCTCCAAAATCCCCATCAGACACAGAAACCATGTCATTCACGAAGCTCAAAAAGCCCTCACCGATTACCTCCACAACACCAAATCCATACCCTTCATCTATGCAGAACACATTGGCAACAACACTCTCTGTTCCCTCACAAATCTCATTTCAAAGGTACATTTTTCACTACCCACTTTCTCAAATAACATTAAAAGAGTCATTAGGTTTCACCCCATTAACGAATTTGAAGTCTTTTTTGAAAGCATAGGGATAGATTATACTTTGGTTTCTGATTTGTTACCGAATGATAAGCTGTTCTTTTCAGAGGATATGACTCTTTTAGAAGCTGCTTGTGTGCTTTGTGATTTTGGGTTTCCTTGGGAGAAGTTAGGTGTGTTGTATATGGAGAAGAGTTCTATATTTGGGAAAAGTGTTGAAGAGTTGAAATTGAGGCTTTGTTGGTTTAAAAGATTTGGTTTTGGTAATGTTGAAGTTATTGGGATTTGTTTGGCTTTTCCTTTTGTTTTGAGTGAGGAAGTGGGTCAAATTCAAAAGGGTGTTTTTGGAATTGATGAGTTGTTTAGTGATCTAAAGTTAATTTTCTTGGATAATTCTTTGGGGAGTTATGTTGAGGGAAATGTAGATTCATGGCATGAGGTGTGTAGAAAGTTGCGATTTTTTTACGATTTGAATGGATGGAAGGGTAATGTAGGAGAACTCATGGGGAGGAATAAGAGTATATTTGTTGATCACAAAGAAGAGGAGATAGTACATAAAGTAGAGTATTTCTGTGGATTTGGTGGAAAGAAGGAGGAAGTGGCTTTATTGATTCTGCAATGTCCTGAAGCGTTGAAGCTTGATTTGGAGAAGACGGTGATTAATGTGTTGGAGCTGTTGAAACACTTTGGCATGAGCTCTAAAGATTTGGAGGATGTTATTGAAAATTTTGGTCATGTGTTGGGAACAATTAGAATGGTTAATCTACCAAATGTGATGAGAGCTATGGGTTTGCAAGAATGGTTCTGTGATAAGTTAAAGGGTGGGCATTATCGGTTGCTAGCGGATTATATCACAAGTGATCGCAATGAAGACCGGGATAAAGATTATCAAGATGGTTTGAGGAGAATTCACATTTCACGAGCTCGAGTTCATAGCATTAATAAGTTAAATTTCTTACATAGATTAGGCTTTGGAGAAAATGCATTGACTATGAATCTTTTGGATCGTTTGCACGGCACAAGCAGTGAGTTACAGGAAAGATTTGACTGCCTTCTACGCTCAAGAATTGAATTCTCAAAGCTCTGCATGATGAAAGTTATAGTTGATTTGTTCCTTTCGGTGACGATTGAGTTTTCACAGTTTAGGATGCTAATTTCTACTACCTCAATCTTTTTTCAGCTATGA

Protein sequence

>Msa1029290

MFFFLHRHFSTTTKTNFPNLSKIPIRHRNHVIHEAQKALTDYLHNTKSIPFIYAEHIGNNTLCSLTNLISKVHFSLPTFSNNIKRVIRFHPINEFEVFFESIGIDYTLVSDLLPNDKLFFSEDMTLLEAACVLCDFGFPWEKLGVLYMEKSSIFGKSVEELKLRLCWFKRFGFGNVEVIGICLAFPFVLSEEVGQIQKGVFGIDELFSDLKLIFLDNSLGSYVEGNVDSWHEVCRKLRFFYDLNGWKGNVGELMGRNKSIFVDHKEEEIVHKVEYFCGFGGKKEEVALLILQCPEALKLDLEKTVINVLELLKHFGMSSKDLEDVIENFGHVLGTIRMVNLPNVMRAMGLQEWFCDKLKGGHYRLLADYITSDRNEDRDKDYQDGLRRIHISRARVHSINKLNFLHRLGFGENALTMNLLDRLHGTSSELQERFDCLLRSRIEFSKLCMMKVIVDLFLSVTIEFSQFRMLISTTSIFFQL*