AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1029290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1029290 MtrunA17_Chr7g0249711 94.667 450 24 0 1 450 27 476 0.0 875
Msa1029290 MtrunA17_Chr8g0335121 54.923 457 196 6 5 456 9 460 3.56e-171 493
Msa1029290 MtrunA17_Chr5g0438661 23.991 446 313 9 12 450 86 512 1.11e-26 113
Msa1029290 MtrunA17_Chr7g0258521 32.919 161 99 2 3 154 13 173 8.23e-20 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1029290 AT3G60400.1 47.100 431 220 2 22 450 24 448 7.98e-131 390
Msa1029290 AT4G19650.2 26.128 421 282 7 33 445 85 484 2.36e-36 142
Msa1029290 AT4G19650.1 24.561 399 272 7 55 445 90 467 1.49e-28 119
Msa1029290 AT5G06811.1 26.512 430 286 10 22 438 52 464 2.22e-27 115
Msa1029290 AT5G06810.1 23.438 448 304 11 7 438 44 468 1.72e-21 98.2

Find 116 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTGTGTGCTTTGTGATTT+TGG 0.070594 7_1:-62704427 Msa1029290:CDS
TGAAATCTATTTCCTATTTC+TGG 0.083567 7_1:-62702498 Msa1029290:three_prime_UTR
TGCATTGACTATGAATCTTT+TGG 0.189736 7_1:-62703576 Msa1029290:CDS
AAAGACTTCAAATTCGTTAA+TGG 0.197617 7_1:+62704543 None:intergenic
TTTGGTAATGTTGAAGTTAT+TGG 0.228613 7_1:-62704298 Msa1029290:CDS
TCTTATTGACATCCAGAAAT+AGG 0.235247 7_1:+62702486 None:intergenic
GAGGATGTTATTGAAAATTT+TGG 0.244503 7_1:-62703848 Msa1029290:CDS
CTTGAACTCGCTCCAAATTA+AGG 0.247838 7_1:+62701952 None:intergenic
AAGACTTCAAATTCGTTAAT+GGG 0.265361 7_1:+62704544 None:intergenic
TTTGAATGAGTCACCATAAA+AGG 0.270318 7_1:-62700498 Msa1029290:three_prime_UTR
TCTGTGTCTGATGGGGATTT+TGG 0.281143 7_1:+62704753 None:intergenic
ATGGAGAAGAGTTCTATATT+TGG 0.292885 7_1:-62704373 Msa1029290:CDS
TTGGTAATGTTGAAGTTATT+GGG 0.297592 7_1:-62704297 Msa1029290:CDS
TTTGGAGAGGTTTGGGAAGT+TGG 0.299547 7_1:+62704771 None:intergenic
GTAGAGTATTTCTGTGGATT+TGG 0.306808 7_1:-62703998 Msa1029290:CDS
CTTTGTTGGTTTAAAAGATT+TGG 0.309206 7_1:-62704322 Msa1029290:CDS
GAAGTTAGGTGTGTTGTATA+TGG 0.320179 7_1:-62704392 Msa1029290:CDS
TGGCATGAGCTCTAAAGATT+TGG 0.330860 7_1:-62703870 Msa1029290:CDS
GGGTTTCCTTGGGAGAAGTT+AGG 0.333161 7_1:-62704406 Msa1029290:CDS
TTTAATGTTATTTGAGAAAG+TGG 0.339356 7_1:+62704585 None:intergenic
TGAAGCGTTGAAGCTTGATT+TGG 0.341445 7_1:-62703933 Msa1029290:CDS
TGGAGAAGAGTTCTATATTT+GGG 0.347223 7_1:-62704372 Msa1029290:CDS
ATGGTTCTGTGATAAGTTAA+AGG 0.357332 7_1:-62703759 Msa1029290:CDS
GAGCTATGGGTTTGCAAGAA+TGG 0.361647 7_1:-62703778 Msa1029290:CDS
AGTTAAAGGGTGGGCATTAT+CGG 0.361917 7_1:-62703745 Msa1029290:CDS
TCCAGTCTAGAGGTGGTGTT+TGG 0.362953 7_1:-62700746 Msa1029290:three_prime_UTR
ATTCAATTCTTGAGCGTAGA+AGG 0.364335 7_1:+62703507 None:intergenic
TATAGTTGATTTGTTCCTTT+CGG 0.364933 7_1:-62702676 Msa1029290:CDS
ATAACATTAAAAGAGTCATT+AGG 0.366307 7_1:-62704573 Msa1029290:CDS
CATAGTTCGTAGTTGATTGT+TGG 0.367476 7_1:-62701918 Msa1029290:three_prime_UTR
TTCTTACATAGATTAGGCTT+TGG 0.390843 7_1:-62703605 Msa1029290:CDS
AGTTGAAATTGAGGCTTTGT+TGG 0.393745 7_1:-62704336 Msa1029290:CDS
AAATCAAGCTTCAACGCTTC+AGG 0.393972 7_1:+62703935 None:intergenic
TTAAATTTCTTACATAGATT+AGG 0.396832 7_1:-62703611 Msa1029290:CDS
TGAAGTTATTGGGATTTGTT+TGG 0.398881 7_1:-62704287 Msa1029290:CDS
CTGTGGATTTGGTGGAAAGA+AGG 0.405320 7_1:-62703987 Msa1029290:CDS
CCCATAGCTCTCATCACATT+TGG 0.415076 7_1:+62703791 None:intergenic
TTTGGTGTTGTGGAGGTAAT+CGG 0.422094 7_1:+62704696 None:intergenic
AGTCTAGAGGTGGTGTTTGG+AGG 0.432136 7_1:-62700743 Msa1029290:three_prime_UTR
GTGTCCATGTATATGAATTA+AGG 0.435933 7_1:-62700434 None:intergenic
CATGAGCTCTAAAGATTTGG+AGG 0.452449 7_1:-62703867 Msa1029290:CDS
TAGAGGTGGTGTTTGGAGGC+TGG 0.453206 7_1:-62700739 Msa1029290:three_prime_UTR
TGGTTTAAAAGATTTGGTTT+TGG 0.453368 7_1:-62704316 Msa1029290:CDS
AAGATTATCAAGATGGTTTG+AGG 0.456096 7_1:-62703676 Msa1029290:CDS
CATAGGGATAGATTATACTT+TGG 0.460683 7_1:-62704512 Msa1029290:CDS
CACACCTTAATTCATATACA+TGG 0.460822 7_1:+62700430 None:intergenic
TCCAAACACCACCTCTAGAC+TGG 0.461090 7_1:+62700745 None:intergenic
TTGAGGGAAATGTAGATTCA+TGG 0.468819 7_1:-62704147 Msa1029290:CDS
TGGTGGAAAGAAGGAGGAAG+TGG 0.471562 7_1:-62703978 Msa1029290:CDS
TCTTTGGGGAGTTATGTTGA+GGG 0.476597 7_1:-62704163 Msa1029290:CDS
GAGTATTTCTGTGGATTTGG+TGG 0.478331 7_1:-62703995 Msa1029290:CDS
ATAGATGAAGGGTATGGATT+TGG 0.490694 7_1:+62704678 None:intergenic
CGGGATAAAGATTATCAAGA+TGG 0.492595 7_1:-62703683 Msa1029290:CDS
AATGGATGGAAGGGTAATGT+AGG 0.497129 7_1:-62704085 Msa1029290:CDS
GAAAAGAACAGCTTATCATT+CGG 0.501059 7_1:+62704475 None:intergenic
GGAAGTGGGTCAAATTCAAA+AGG 0.502040 7_1:-62704242 Msa1029290:CDS
TGGTTCTGTGATAAGTTAAA+GGG 0.503197 7_1:-62703758 Msa1029290:CDS
CAAGTGATCGCAATGAAGAC+CGG 0.503592 7_1:-62703703 Msa1029290:CDS
TTCTTTGGGGAGTTATGTTG+AGG 0.504050 7_1:-62704164 Msa1029290:CDS
ACTTCCTCACTCAAAACAAA+AGG 0.505183 7_1:+62704259 None:intergenic
TACTCTCGCAACACTACTAC+AGG 0.513293 7_1:+62700811 None:intergenic
CATCTTGATAATCTTTATCC+CGG 0.516234 7_1:+62703684 None:intergenic
CCAAATGTGATGAGAGCTAT+GGG 0.525151 7_1:-62703791 Msa1029290:CDS
ACCAAATGTGATGAGAGCTA+TGG 0.530073 7_1:-62703792 Msa1029290:CDS
GTTTCAATATTGCTACTGCC+AGG 0.534194 7_1:-62701866 Msa1029290:intron
TACGATTTGAATGGATGGAA+GGG 0.534342 7_1:-62704094 Msa1029290:CDS
TTACGATTTGAATGGATGGA+AGG 0.534900 7_1:-62704095 Msa1029290:CDS
ACATGGTTTCTGTGTCTGAT+GGG 0.535641 7_1:+62704745 None:intergenic
TCTTTAGATTTGATTTGAGA+AGG 0.536795 7_1:-62700677 Msa1029290:three_prime_UTR
TGTGTTGGGAACAATTAGAA+TGG 0.537589 7_1:-62703822 Msa1029290:CDS
CCTCACAAATCTCATTTCAA+AGG 0.541683 7_1:-62704623 Msa1029290:CDS
GTGTTGAAGAGTTGAAATTG+AGG 0.549592 7_1:-62704345 Msa1029290:CDS
CGAGAGTAGAGGTTCTATCA+TGG 0.552955 7_1:-62700796 Msa1029290:three_prime_UTR
TTGGAGCTGTTGAAACACTT+TGG 0.555886 7_1:-62703890 Msa1029290:CDS
GACATGGTTTCTGTGTCTGA+TGG 0.564066 7_1:+62704744 None:intergenic
ATTCTCAAAGCTCTGCATGA+TGG 0.566277 7_1:-62703486 Msa1029290:intron
GGGTAATGTAGGAGAACTCA+TGG 0.567143 7_1:-62704074 Msa1029290:CDS
AGGTTGCAATGAAGACAGAA+AGG 0.570567 7_1:+62700580 None:intergenic
CTTTGAAATGAGATTTGTGA+GGG 0.572972 7_1:+62704624 None:intergenic
CATAAAGTAGAGTATTTCTG+TGG 0.577594 7_1:-62704004 Msa1029290:CDS
GAAGCTTGATTTGGAGAAGA+CGG 0.580147 7_1:-62703924 Msa1029290:CDS
ACCATAAAAGGCTATGCAAG+TGG 0.580869 7_1:-62700486 Msa1029290:three_prime_UTR
TTCTGTGATAAGTTAAAGGG+TGG 0.581828 7_1:-62703755 Msa1029290:CDS
TGGATTTGGTGGAAAGAAGG+AGG 0.582914 7_1:-62703984 Msa1029290:CDS
ATTTGTTGATCACAAAGAAG+AGG 0.582958 7_1:-62704035 Msa1029290:CDS
TTTGAGCTTCGTGAATGACA+TGG 0.585863 7_1:+62704728 None:intergenic
GAAGACGGTGATTAATGTGT+TGG 0.586071 7_1:-62703909 Msa1029290:CDS
AAGTGATCGCAATGAAGACC+GGG 0.587085 7_1:-62703702 Msa1029290:CDS
TTCTGCATAGATGAAGGGTA+TGG 0.589219 7_1:+62704672 None:intergenic
TTAATGTTATTTGAGAAAGT+GGG 0.590303 7_1:+62704586 None:intergenic
AACGAACAAATCATAAAGCA+AGG 0.590562 7_1:+62701985 None:intergenic
AGACTTCAAATTCGTTAATG+GGG 0.593368 7_1:+62704545 None:intergenic
GGTAATGTAGGAGAACTCAT+GGG 0.593941 7_1:-62704073 Msa1029290:CDS
CGTAGTTGATTGTTGGCATG+TGG 0.594504 7_1:-62701911 Msa1029290:three_prime_UTR
GGAATGTTGTTGTGCAAAAG+AGG 0.596542 7_1:-62701890 Msa1029290:three_prime_UTR
CATGGTTTCTGTGTCTGATG+GGG 0.598267 7_1:+62704746 None:intergenic
GTTGTGGAGGTAATCGGTGA+GGG 0.598909 7_1:+62704702 None:intergenic
AGGGTATGGATTTGGTGTTG+TGG 0.604470 7_1:+62704686 None:intergenic
AATGTGTTCTGCATAGATGA+AGG 0.618079 7_1:+62704666 None:intergenic
CCATAAAAGGCTATGCAAGT+GGG 0.623966 7_1:-62700485 Msa1029290:three_prime_UTR
TTCATCTATGCAGAACACAT+TGG 0.624736 7_1:-62704664 Msa1029290:CDS
ATGTGTTCTGCATAGATGAA+GGG 0.625322 7_1:+62704667 None:intergenic
AACACACCTAACTTCTCCCA+AGG 0.625967 7_1:+62704400 None:intergenic
GTATGGATTTGGTGTTGTGG+AGG 0.635398 7_1:+62704689 None:intergenic
AAAGACTGATCTCTAACACC+AGG 0.635849 7_1:+62700702 None:intergenic
GAAGTGGGTCAAATTCAAAA+GGG 0.636084 7_1:-62704241 Msa1029290:CDS
TAGTAGTGTTGCGAGAGTAG+AGG 0.636222 7_1:-62700807 Msa1029290:three_prime_UTR
AAAACTCAATCGTCACCGAA+AGG 0.637920 7_1:+62702661 None:intergenic
TGGGCATTATCGGTTGCTAG+CGG 0.638664 7_1:-62703735 Msa1029290:CDS
AAATGTAGATTCATGGCATG+AGG 0.639289 7_1:-62704140 Msa1029290:CDS
TGTTGTGGAGGTAATCGGTG+AGG 0.650161 7_1:+62704701 None:intergenic
GTAATGTAGGAGAACTCATG+GGG 0.661705 7_1:-62704072 Msa1029290:CDS
TCTGTGATAAGTTAAAGGGT+GGG 0.664345 7_1:-62703754 Msa1029290:CDS
ATGTAGGAGAACTCATGGGG+AGG 0.683085 7_1:-62704069 Msa1029290:CDS
CCTTTGAAATGAGATTTGTG+AGG 0.730568 7_1:+62704623 None:intergenic
GCGGTGGAGGAAGAAGAACA+TGG 0.740499 7_1:+62704816 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCATTATAATATCATATT+AGG - chr7_1:62704169-62704188 Msa1029290:CDS 10.0%
!!! ATTTTTTTATTTTTGTGTTT+TGG - chr7_1:62704320-62704339 Msa1029290:CDS 10.0%
!! TTAAATTTCTTACATAGATT+AGG - chr7_1:62701638-62701657 Msa1029290:intron 15.0%
!!! GTTTGTTGATATATTTTTAT+TGG - chr7_1:62702683-62702702 Msa1029290:CDS 15.0%
!! TTATAATGAATGCTTAAAAT+GGG + chr7_1:62704160-62704179 None:intergenic 15.0%
!! ATTATAATGAATGCTTAAAA+TGG + chr7_1:62704161-62704180 None:intergenic 15.0%
!!! TTAATGTTATTTGAGAAAGT+GGG + chr7_1:62700666-62700685 None:intergenic 20.0%
!!! TTTAATGTTATTTGAGAAAG+TGG + chr7_1:62700667-62700686 None:intergenic 20.0%
!! ATAACATTAAAAGAGTCATT+AGG - chr7_1:62700676-62700695 Msa1029290:three_prime_UTR 20.0%
!!! TGATCTAAAGTTAATTTTCT+TGG - chr7_1:62701058-62701077 Msa1029290:intron 20.0%
!!! AATTTTCTTGGATAATTCTT+TGG - chr7_1:62701070-62701089 Msa1029290:intron 20.0%
!!! ATTTTCTTGGATAATTCTTT+GGG - chr7_1:62701071-62701090 Msa1029290:intron 20.0%
!!! GCTCTATAATTTCATAATTT+TGG + chr7_1:62701814-62701833 None:intergenic 20.0%
!! AAATACCACAATTATTACAT+TGG + chr7_1:62702103-62702122 None:intergenic 20.0%
!! AAATGAAAAAAAATGAACGT+GGG + chr7_1:62702351-62702370 None:intergenic 20.0%
!! AAAATGAAAAAAAATGAACG+TGG + chr7_1:62702352-62702371 None:intergenic 20.0%
!!! AGGTATAAATTTTGCTTTTT+TGG + chr7_1:62702375-62702394 None:intergenic 20.0%
!!! TATATTTTTATTGGATTTGC+AGG - chr7_1:62702692-62702711 Msa1029290:intron 20.0%
!! CCATACTTAATAAAGTAAAT+AGG + chr7_1:62702869-62702888 None:intergenic 20.0%
!! CCTATTTACTTTATTAAGTA+TGG - chr7_1:62702866-62702885 Msa1029290:intron 20.0%
!! TTAAGTATGGATATAGATTT+AGG - chr7_1:62702879-62702898 Msa1029290:intron 20.0%
!! TAAGTATGGATATAGATTTA+GGG - chr7_1:62702880-62702899 Msa1029290:intron 20.0%
!! ATCAAACATAACATACATAT+AGG + chr7_1:62703117-62703136 None:intergenic 20.0%
!!! TTTTATTTTGAGCCTTAATT+TGG - chr7_1:62703285-62703304 Msa1029290:intron 20.0%
!!! TTCAGAATGTAAAAGATTTT+AGG + chr7_1:62704091-62704110 None:intergenic 20.0%
!!! TCATAGACCATTTAATATTT+TGG - chr7_1:62704267-62704286 Msa1029290:CDS 20.0%
!! ATAAGAGCCAAAATATTAAA+TGG + chr7_1:62704277-62704296 None:intergenic 20.0%
!! CTTTCTATGAAGAAAAAAAA+CGG + chr7_1:62704701-62704720 None:intergenic 20.0%
! AAGACTTCAAATTCGTTAAT+GGG + chr7_1:62700708-62700727 None:intergenic 25.0%
! AAAGACTTCAAATTCGTTAA+TGG + chr7_1:62700709-62700728 None:intergenic 25.0%
!!! AAGTCTTTTTTGAAAGCATA+GGG - chr7_1:62700721-62700740 Msa1029290:three_prime_UTR 25.0%
!!! CTTTGTTGGTTTAAAAGATT+TGG - chr7_1:62700927-62700946 Msa1029290:intron 25.0%
!!! TGGTTTAAAAGATTTGGTTT+TGG - chr7_1:62700933-62700952 Msa1029290:intron 25.0%
!!! TTTGGTAATGTTGAAGTTAT+TGG - chr7_1:62700951-62700970 Msa1029290:intron 25.0%
!!! TTGGTAATGTTGAAGTTATT+GGG - chr7_1:62700952-62700971 Msa1029290:intron 25.0%
!! TTTTCTTGGATAATTCTTTG+GGG - chr7_1:62701072-62701091 Msa1029290:intron 25.0%
!!! CGATTTTTTTACGATTTGAA+TGG - chr7_1:62701146-62701165 Msa1029290:intron 25.0%
!!! TTTTTTACGATTTGAATGGA+TGG - chr7_1:62701150-62701169 Msa1029290:intron 25.0%
!! GAGGATGTTATTGAAAATTT+TGG - chr7_1:62701401-62701420 Msa1029290:intron 25.0%
!!! AAAAGTGAATTTTTTCAACC+AGG - chr7_1:62701835-62701854 Msa1029290:intron 25.0%
!!! AATTTTTTCAACCAGGAAAT+GGG - chr7_1:62701842-62701861 Msa1029290:intron 25.0%
!! TACAAATTTCTTTTCGCTAT+CGG + chr7_1:62702011-62702030 None:intergenic 25.0%
! ATTATTACATTGGCAATTGA+CGG + chr7_1:62702093-62702112 None:intergenic 25.0%
! AATTGCCAATGTAATAATTG+TGG - chr7_1:62702095-62702114 Msa1029290:intron 25.0%
!! ACTTACTCTAAAAGCTAATT+AGG - chr7_1:62702140-62702159 Msa1029290:intron 25.0%
!! AAATTGCAGTTTTTCTTTCA+AGG - chr7_1:62702306-62702325 Msa1029290:intron 25.0%
!! CAAATCAACTTTAACTTTCA+GGG + chr7_1:62702467-62702486 None:intergenic 25.0%
!! ACAAATCAACTTTAACTTTC+AGG + chr7_1:62702468-62702487 None:intergenic 25.0%
! ACAAATCAACTATAACTTTC+TGG + chr7_1:62702567-62702586 None:intergenic 25.0%
!!! TATAGTTGATTTGTTCCTTT+CGG - chr7_1:62702573-62702592 Msa1029290:intron 25.0%
! TGAAATCTATTTCCTATTTC+TGG - chr7_1:62702751-62702770 Msa1029290:intron 25.0%
! AAGAAAATATGTGAGTCTAA+TGG - chr7_1:62702782-62702801 Msa1029290:intron 25.0%
! TAGGATCATATGAAAAGAAA+AGG + chr7_1:62702850-62702869 None:intergenic 25.0%
! GTTCATAGTTAATTGATTGT+TGG - chr7_1:62703447-62703466 Msa1029290:intron 25.0%
! GTAAAATGAACTAAAACACT+TGG + chr7_1:62703608-62703627 None:intergenic 25.0%
!! TGAGATTAAGTTTGTTTGAT+TGG - chr7_1:62703845-62703864 Msa1029290:CDS 25.0%
!! TTTATGCTTATGACAGATTT+TGG - chr7_1:62704359-62704378 Msa1029290:CDS 25.0%
!!! TCTTTAGATTTGATTTGAGA+AGG - chr7_1:62704572-62704591 Msa1029290:CDS 25.0%
! AAAAGCAAAAAAGGATTATG+AGG + chr7_1:62704642-62704661 None:intergenic 25.0%
!!! CGTTTTTTTTCTTCATAGAA+AGG - chr7_1:62704699-62704718 Msa1029290:CDS 25.0%
!! CTTTGAAATGAGATTTGTGA+GGG + chr7_1:62700628-62700647 None:intergenic 30.0%
AGACTTCAAATTCGTTAATG+GGG + chr7_1:62700707-62700726 None:intergenic 30.0%
!!! GAAGTCTTTTTTGAAAGCAT+AGG - chr7_1:62700720-62700739 Msa1029290:three_prime_UTR 30.0%
CATAGGGATAGATTATACTT+TGG - chr7_1:62700737-62700756 Msa1029290:three_prime_UTR 30.0%
GAAAAGAACAGCTTATCATT+CGG + chr7_1:62700777-62700796 None:intergenic 30.0%
ATGGAGAAGAGTTCTATATT+TGG - chr7_1:62700876-62700895 Msa1029290:three_prime_UTR 30.0%
TGGAGAAGAGTTCTATATTT+GGG - chr7_1:62700877-62700896 Msa1029290:three_prime_UTR 30.0%
! TGAAGTTATTGGGATTTGTT+TGG - chr7_1:62700962-62700981 Msa1029290:intron 30.0%
!!! TTTTCCTTTTGTTTTGAGTG+AGG - chr7_1:62700986-62701005 Msa1029290:intron 30.0%
!!! CAAATTCAAAAGGGTGTTTT+TGG - chr7_1:62701017-62701036 Msa1029290:intron 30.0%
! ATTTGTTGATCACAAAGAAG+AGG - chr7_1:62701214-62701233 Msa1029290:intron 30.0%
! CATAAAGTAGAGTATTTCTG+TGG - chr7_1:62701245-62701264 Msa1029290:intron 30.0%
!! TGAAAATTTTGGTCATGTGT+TGG - chr7_1:62701412-62701431 Msa1029290:intron 30.0%
!! GAAAATTTTGGTCATGTGTT+GGG - chr7_1:62701413-62701432 Msa1029290:intron 30.0%
! ATGGTTCTGTGATAAGTTAA+AGG - chr7_1:62701490-62701509 Msa1029290:intron 30.0%
! TGGTTCTGTGATAAGTTAAA+GGG - chr7_1:62701491-62701510 Msa1029290:intron 30.0%
! CATCTTGATAATCTTTATCC+CGG + chr7_1:62701568-62701587 None:intergenic 30.0%
AAGATTATCAAGATGGTTTG+AGG - chr7_1:62701573-62701592 Msa1029290:intron 30.0%
TTCTTACATAGATTAGGCTT+TGG - chr7_1:62701644-62701663 Msa1029290:intron 30.0%
!!! TGCATTGACTATGAATCTTT+TGG - chr7_1:62701673-62701692 Msa1029290:intron 30.0%
!!! AATTTTGGTTCAGAATCCTT+GGG + chr7_1:62701799-62701818 None:intergenic 30.0%
!!! TAATTTTGGTTCAGAATCCT+TGG + chr7_1:62701800-62701819 None:intergenic 30.0%
!!! GAATTTTTTCAACCAGGAAA+TGG - chr7_1:62701841-62701860 Msa1029290:intron 30.0%
ATCTGTACCTAGGTATAATT+CGG + chr7_1:62701925-62701944 None:intergenic 30.0%
! TGGATGAATTTTAAACACTC+GGG + chr7_1:62702035-62702054 None:intergenic 30.0%
! CTGGATGAATTTTAAACACT+CGG + chr7_1:62702036-62702055 None:intergenic 30.0%
AGAGTAAGTATGATATGACT+AGG + chr7_1:62702129-62702148 None:intergenic 30.0%
! GATTGTAGAACACGTTTTTA+AGG + chr7_1:62702259-62702278 None:intergenic 30.0%
AGCATTAAATGATGTGTCTT+TGG + chr7_1:62702281-62702300 None:intergenic 30.0%
AATTTAGAGAGAAAGAGAGA+TGG + chr7_1:62702414-62702433 None:intergenic 30.0%
TAATTCTTAGATGCTCTCTT+TGG - chr7_1:62702622-62702641 Msa1029290:intron 30.0%
TCATAGCTGAAAAAAGATTG+AGG + chr7_1:62702734-62702753 None:intergenic 30.0%
TCTTATTGACATCCAGAAAT+AGG + chr7_1:62702766-62702785 None:intergenic 30.0%
!! AAGGAGTATTCTTGAAGTAT+AGG - chr7_1:62703057-62703076 Msa1029290:intron 30.0%
GTCCAAACATAACATACATA+TGG + chr7_1:62703095-62703114 None:intergenic 30.0%
! TTTTAGCCTATATTGTTCTC+AGG - chr7_1:62703227-62703246 Msa1029290:intron 30.0%
ACAAAACCTGAGAACAATAT+AGG + chr7_1:62703236-62703255 None:intergenic 30.0%
!! TTGTTCTCAGGTTTTGTAAA+TGG - chr7_1:62703239-62703258 Msa1029290:intron 30.0%
AACGAACAAATCATAAAGCA+AGG + chr7_1:62703267-62703286 None:intergenic 30.0%
AAAGTAGAGAGCAGAAAAAA+CGG + chr7_1:62703580-62703599 None:intergenic 30.0%
CAAGATTGGAGTTTAATTCA+AGG + chr7_1:62703756-62703775 None:intergenic 30.0%
GAGACTAATAGAATCAAAGT+TGG - chr7_1:62703821-62703840 Msa1029290:CDS 30.0%
ATGAATGCTTAAAATGGGAA+TGG + chr7_1:62704155-62704174 None:intergenic 30.0%
! TATTAGGATGCTTTAGTCTT+TGG - chr7_1:62704185-62704204 Msa1029290:CDS 30.0%
! ATTAGGATGCTTTAGTCTTT+GGG - chr7_1:62704186-62704205 Msa1029290:CDS 30.0%
!!! AGTTTTTTTTTCCAGTCTAG+AGG - chr7_1:62704493-62704512 Msa1029290:CDS 30.0%
AAGAAAAAAAACGGCTATAG+AGG + chr7_1:62704692-62704711 None:intergenic 30.0%
TTTGAATGAGTCACCATAAA+AGG - chr7_1:62704751-62704770 Msa1029290:CDS 30.0%
!!! TTTTTGTGGTGGTGGAAAAA+TGG + chr7_1:62700458-62700477 None:intergenic 35.0%
! ATAGATGAAGGGTATGGATT+TGG + chr7_1:62700574-62700593 None:intergenic 35.0%
ATGTGTTCTGCATAGATGAA+GGG + chr7_1:62700585-62700604 None:intergenic 35.0%
AATGTGTTCTGCATAGATGA+AGG + chr7_1:62700586-62700605 None:intergenic 35.0%
TTCATCTATGCAGAACACAT+TGG - chr7_1:62700585-62700604 Msa1029290:three_prime_UTR 35.0%
!! CCTTTGAAATGAGATTTGTG+AGG + chr7_1:62700629-62700648 None:intergenic 35.0%
CCTCACAAATCTCATTTCAA+AGG - chr7_1:62700626-62700645 Msa1029290:three_prime_UTR 35.0%
! TGATAAGCTGTTCTTTTCAG+AGG - chr7_1:62700779-62700798 Msa1029290:three_prime_UTR 35.0%
! CTTGTGTGCTTTGTGATTTT+GGG - chr7_1:62700823-62700842 Msa1029290:three_prime_UTR 35.0%
!!! TTTGTGATTTTGGGTTTCCT+TGG - chr7_1:62700832-62700851 Msa1029290:three_prime_UTR 35.0%
!!! TTGTGATTTTGGGTTTCCTT+GGG - chr7_1:62700833-62700852 Msa1029290:three_prime_UTR 35.0%
GAAGTTAGGTGTGTTGTATA+TGG - chr7_1:62700857-62700876 Msa1029290:three_prime_UTR 35.0%
GTGTTGAAGAGTTGAAATTG+AGG - chr7_1:62700904-62700923 Msa1029290:intron 35.0%
! AGTTGAAATTGAGGCTTTGT+TGG - chr7_1:62700913-62700932 Msa1029290:intron 35.0%
ACTTCCTCACTCAAAACAAA+AGG + chr7_1:62700993-62701012 None:intergenic 35.0%
!!! TTTTGTTTTGAGTGAGGAAG+TGG - chr7_1:62700992-62701011 Msa1029290:intron 35.0%
!!! TTTGTTTTGAGTGAGGAAGT+GGG - chr7_1:62700993-62701012 Msa1029290:intron 35.0%
GAAGTGGGTCAAATTCAAAA+GGG - chr7_1:62701008-62701027 Msa1029290:intron 35.0%
TTGAGGGAAATGTAGATTCA+TGG - chr7_1:62701102-62701121 Msa1029290:intron 35.0%
AAATGTAGATTCATGGCATG+AGG - chr7_1:62701109-62701128 Msa1029290:intron 35.0%
TTACGATTTGAATGGATGGA+AGG - chr7_1:62701154-62701173 Msa1029290:intron 35.0%
TACGATTTGAATGGATGGAA+GGG - chr7_1:62701155-62701174 Msa1029290:intron 35.0%
! GTAGAGTATTTCTGTGGATT+TGG - chr7_1:62701251-62701270 Msa1029290:intron 35.0%
TGTGTTGGGAACAATTAGAA+TGG - chr7_1:62701427-62701446 Msa1029290:intron 35.0%
TTCTGTGATAAGTTAAAGGG+TGG - chr7_1:62701494-62701513 Msa1029290:intron 35.0%
TCTGTGATAAGTTAAAGGGT+GGG - chr7_1:62701495-62701514 Msa1029290:intron 35.0%
CGGGATAAAGATTATCAAGA+TGG - chr7_1:62701566-62701585 Msa1029290:intron 35.0%
! AATCTTTTGGATCGTTTGCA+CGG - chr7_1:62701686-62701705 Msa1029290:intron 35.0%
ATTCAATTCTTGAGCGTAGA+AGG + chr7_1:62701745-62701764 None:intergenic 35.0%
!!! ATTTTGGTTCAGAATCCTTG+GGG + chr7_1:62701798-62701817 None:intergenic 35.0%
! AAGTGATAATGCAACATTGC+TGG + chr7_1:62701896-62701915 None:intergenic 35.0%
AGCAATGTTGCATTATCACT+TGG - chr7_1:62701895-62701914 Msa1029290:three_prime_UTR 35.0%
ATCGGTGATCATACTTTGAA+TGG + chr7_1:62701993-62702012 None:intergenic 35.0%
! AATTGCTCGAACCAATGTTT+TGG + chr7_1:62702064-62702083 None:intergenic 35.0%
!!! CGTTTTTAAGGCTAGTTTAG+AGG + chr7_1:62702247-62702266 None:intergenic 35.0%
! ATGGATTGAAGTTGAAGACA+AGG + chr7_1:62702395-62702414 None:intergenic 35.0%
TTAACTTTCAGGGATGATGA+AGG + chr7_1:62702457-62702476 None:intergenic 35.0%
! CGATTGAGTTTTCACAGTTT+AGG - chr7_1:62702599-62702618 Msa1029290:intron 35.0%
!! AGATGCTCTCTTTGGAATTA+TGG - chr7_1:62702630-62702649 Msa1029290:intron 35.0%
AGCTAACCTAATGTTGTTAC+TGG - chr7_1:62702961-62702980 Msa1029290:intron 35.0%
GCTAACCTAATGTTGTTACT+GGG - chr7_1:62702962-62702981 Msa1029290:intron 35.0%
CTAACCTAATGTTGTTACTG+GGG - chr7_1:62702963-62702982 Msa1029290:intron 35.0%
TAACCTAATGTTGTTACTGG+GGG - chr7_1:62702964-62702983 Msa1029290:intron 35.0%
AAAGATTGGATTCAAGGGTT+TGG - chr7_1:62702991-62703010 Msa1029290:intron 35.0%
GTTATAGTCTGATGTGTTTG+TGG - chr7_1:62703031-62703050 Msa1029290:intron 35.0%
TCTGATGTGTTTGTGGTTAA+AGG - chr7_1:62703038-62703057 Msa1029290:intron 35.0%
GGCCATATGTATGTTATGTT+TGG - chr7_1:62703090-62703109 Msa1029290:intron 35.0%
! TCTGAAACTAAGTAGTGTCT+TGG - chr7_1:62703175-62703194 Msa1029290:intron 35.0%
CATAGTTCGTAGTTGATTGT+TGG - chr7_1:62703331-62703350 Msa1029290:intron 35.0%
ACTGCCAGGTAAGAATAATT+TGG - chr7_1:62703397-62703416 Msa1029290:intron 35.0%
TGAATGTTGTTGTGCAAAAG+AGG - chr7_1:62703474-62703493 Msa1029290:intron 35.0%
AGGAGACTAATACAAACTGT+TGG + chr7_1:62703651-62703670 None:intergenic 35.0%
! TCTCTTTAGCGTAGTAGTTT+TGG - chr7_1:62703703-62703722 Msa1029290:CDS 35.0%
GCGATAGATATAAGCAAGAT+TGG + chr7_1:62703770-62703789 None:intergenic 35.0%
! TTGTTTGACTTAGTATGCAC+CGG - chr7_1:62703876-62703895 Msa1029290:CDS 35.0%
GGGAAAAGGATACTAATTGA+TGG + chr7_1:62703941-62703960 None:intergenic 35.0%
TCAACGAACAATACATGCAA+TGG - chr7_1:62703998-62704017 Msa1029290:CDS 35.0%
! AAAGATTTTAGGCTGCAACA+AGG + chr7_1:62704080-62704099 None:intergenic 35.0%
GGTCTATGAGAAAACAAACA+TGG + chr7_1:62704256-62704275 None:intergenic 35.0%
!!! TTTTTTTTCCAGTCTAGAGG+TGG - chr7_1:62704496-62704515 Msa1029290:CDS 35.0%
!!! GTTTGGGAAGTTGGTTTTTG+TGG + chr7_1:62700472-62700491 None:intergenic 40.0%
ACATGGTTTCTGTGTCTGAT+GGG + chr7_1:62700507-62700526 None:intergenic 40.0%
TTTGAGCTTCGTGAATGACA+TGG + chr7_1:62700524-62700543 None:intergenic 40.0%
!! TTTGGTGTTGTGGAGGTAAT+CGG + chr7_1:62700556-62700575 None:intergenic 40.0%
TTCTGCATAGATGAAGGGTA+TGG + chr7_1:62700580-62700599 None:intergenic 40.0%
! GCTTGTGTGCTTTGTGATTT+TGG - chr7_1:62700822-62700841 Msa1029290:three_prime_UTR 40.0%
GGAAGTGGGTCAAATTCAAA+AGG - chr7_1:62701007-62701026 Msa1029290:intron 40.0%
! TTCTTTGGGGAGTTATGTTG+AGG - chr7_1:62701085-62701104 Msa1029290:intron 40.0%
! TCTTTGGGGAGTTATGTTGA+GGG - chr7_1:62701086-62701105 Msa1029290:intron 40.0%
AATGGATGGAAGGGTAATGT+AGG - chr7_1:62701164-62701183 Msa1029290:intron 40.0%
GGTAATGTAGGAGAACTCAT+GGG - chr7_1:62701176-62701195 Msa1029290:intron 40.0%
GTAATGTAGGAGAACTCATG+GGG - chr7_1:62701177-62701196 Msa1029290:intron 40.0%
! GAGTATTTCTGTGGATTTGG+TGG - chr7_1:62701254-62701273 Msa1029290:intron 40.0%
AAATCAAGCTTCAACGCTTC+AGG + chr7_1:62701317-62701336 None:intergenic 40.0%
!! TGAAGCGTTGAAGCTTGATT+TGG - chr7_1:62701316-62701335 Msa1029290:intron 40.0%
!! GAAGCTTGATTTGGAGAAGA+CGG - chr7_1:62701325-62701344 Msa1029290:intron 40.0%
GAAGACGGTGATTAATGTGT+TGG - chr7_1:62701340-62701359 Msa1029290:intron 40.0%
TTGGAGCTGTTGAAACACTT+TGG - chr7_1:62701359-62701378 Msa1029290:intron 40.0%
!! TGGCATGAGCTCTAAAGATT+TGG - chr7_1:62701379-62701398 Msa1029290:intron 40.0%
!! CATGAGCTCTAAAGATTTGG+AGG - chr7_1:62701382-62701401 Msa1029290:intron 40.0%
ACCAAATGTGATGAGAGCTA+TGG - chr7_1:62701457-62701476 Msa1029290:intron 40.0%
CCAAATGTGATGAGAGCTAT+GGG - chr7_1:62701458-62701477 Msa1029290:intron 40.0%
AGTTAAAGGGTGGGCATTAT+CGG - chr7_1:62701504-62701523 Msa1029290:intron 40.0%
ATTCTCAAAGCTCTGCATGA+TGG - chr7_1:62701763-62701782 Msa1029290:intron 40.0%
TGATGGTAAGAAAAACCCCA+AGG - chr7_1:62701780-62701799 Msa1029290:intron 40.0%
TGGATGACCGAATTATACCT+AGG - chr7_1:62701915-62701934 Msa1029290:three_prime_UTR 40.0%
TTGCTTAACCCTAATTGCCT+TGG - chr7_1:62702171-62702190 Msa1029290:intron 40.0%
GGAAAACACCAAGGCAATTA+GGG + chr7_1:62702182-62702201 None:intergenic 40.0%
CACACTTAGGGTATATGCTT+GGG + chr7_1:62702207-62702226 None:intergenic 40.0%
ACACACTTAGGGTATATGCT+TGG + chr7_1:62702208-62702227 None:intergenic 40.0%
!! TAGCTTGCTGAACACACTTA+GGG + chr7_1:62702219-62702238 None:intergenic 40.0%
!! ATAGCTTGCTGAACACACTT+AGG + chr7_1:62702220-62702239 None:intergenic 40.0%
GATGAAGGAAGAAGAGAAGT+AGG + chr7_1:62702442-62702461 None:intergenic 40.0%
AGGAACAAATCAGAGGAGTA+AGG + chr7_1:62702539-62702558 None:intergenic 40.0%
! ACTATAACTTTCTGGCGATG+AGG + chr7_1:62702559-62702578 None:intergenic 40.0%
AAAACTCAATCGTCACCGAA+AGG + chr7_1:62702591-62702610 None:intergenic 40.0%
GCACGAAAGATTGGATTCAA+GGG - chr7_1:62702986-62703005 Msa1029290:intron 40.0%
!! GATTCAAGGGTTTGGTGTAT+TGG - chr7_1:62702999-62703018 Msa1029290:intron 40.0%
TGAAGTATAGGCTCTCATTG+CGG - chr7_1:62703069-62703088 Msa1029290:intron 40.0%
CTTGAACTCGCTCCAAATTA+AGG + chr7_1:62703300-62703319 None:intergenic 40.0%
GGAATGTTGTTGTGCAAAAG+AGG - chr7_1:62703359-62703378 Msa1029290:intron 40.0%
GTTTCAATATTGCTACTGCC+AGG - chr7_1:62703383-62703402 Msa1029290:intron 40.0%
CGCTCCAAATTATTCTTACC+TGG + chr7_1:62703404-62703423 None:intergenic 40.0%
AGAGATGGATCAAAACACAG+GGG + chr7_1:62703538-62703557 None:intergenic 40.0%
CAGAGATGGATCAAAACACA+GGG + chr7_1:62703539-62703558 None:intergenic 40.0%
ACAGAGATGGATCAAAACAC+AGG + chr7_1:62703540-62703559 None:intergenic 40.0%
TTGGAGCTGAAATACAGAGA+TGG + chr7_1:62703553-62703572 None:intergenic 40.0%
GAGCAGAAAAAACGGAATGT+TGG + chr7_1:62703572-62703591 None:intergenic 40.0%
! AGTTTGTATTAGTCTCCTGC+TGG - chr7_1:62703653-62703672 Msa1029290:CDS 40.0%
!! CGCGTATGTTTTGTTGATGT+TGG - chr7_1:62703787-62703806 Msa1029290:CDS 40.0%
! TGTTTGACTTAGTATGCACC+GGG - chr7_1:62703877-62703896 Msa1029290:CDS 40.0%
TGTACAATGAAGTGGGGAAA+AGG + chr7_1:62703955-62703974 None:intergenic 40.0%
CACTTGTGTACAATGAAGTG+GGG + chr7_1:62703961-62703980 None:intergenic 40.0%
GCACTTGTGTACAATGAAGT+GGG + chr7_1:62703962-62703981 None:intergenic 40.0%
AGCACTTGTGTACAATGAAG+TGG + chr7_1:62703963-62703982 None:intergenic 40.0%
AAAGACTGATCTCTAACACC+AGG + chr7_1:62704550-62704569 None:intergenic 40.0%
AGGTTGCAATGAAGACAGAA+AGG + chr7_1:62704672-62704691 None:intergenic 40.0%
ACCATAAAAGGCTATGCAAG+TGG - chr7_1:62704763-62704782 Msa1029290:CDS 40.0%
CCATAAAAGGCTATGCAAGT+GGG - chr7_1:62704764-62704783 Msa1029290:CDS 40.0%
!! TTGTGGTGGTGGAAAAATGG+CGG + chr7_1:62700455-62700474 None:intergenic 45.0%
!!! GAAGTTGGTTTTTGTGGTGG+TGG + chr7_1:62700466-62700485 None:intergenic 45.0%
!!! TGGGAAGTTGGTTTTTGTGG+TGG + chr7_1:62700469-62700488 None:intergenic 45.0%
TTTGGAGAGGTTTGGGAAGT+TGG + chr7_1:62700481-62700500 None:intergenic 45.0%
!! TGGGGATTTTGGAGAGGTTT+GGG + chr7_1:62700488-62700507 None:intergenic 45.0%
!! ATGGGGATTTTGGAGAGGTT+TGG + chr7_1:62700489-62700508 None:intergenic 45.0%
! TCTGTGTCTGATGGGGATTT+TGG + chr7_1:62700499-62700518 None:intergenic 45.0%
CATGGTTTCTGTGTCTGATG+GGG + chr7_1:62700506-62700525 None:intergenic 45.0%
GACATGGTTTCTGTGTCTGA+TGG + chr7_1:62700508-62700527 None:intergenic 45.0%
!! GTATGGATTTGGTGTTGTGG+AGG + chr7_1:62700563-62700582 None:intergenic 45.0%
!! AGGGTATGGATTTGGTGTTG+TGG + chr7_1:62700566-62700585 None:intergenic 45.0%
AACACACCTAACTTCTCCCA+AGG + chr7_1:62700852-62700871 None:intergenic 45.0%
GGGTAATGTAGGAGAACTCA+TGG - chr7_1:62701175-62701194 Msa1029290:intron 45.0%
!! CTGTGGATTTGGTGGAAAGA+AGG - chr7_1:62701262-62701281 Msa1029290:intron 45.0%
!! TGGATTTGGTGGAAAGAAGG+AGG - chr7_1:62701265-62701284 Msa1029290:intron 45.0%
CCCATAGCTCTCATCACATT+TGG + chr7_1:62701461-62701480 None:intergenic 45.0%
GAGCTATGGGTTTGCAAGAA+TGG - chr7_1:62701471-62701490 Msa1029290:intron 45.0%
CAAGTGATCGCAATGAAGAC+CGG - chr7_1:62701546-62701565 Msa1029290:intron 45.0%
AAGTGATCGCAATGAAGACC+GGG - chr7_1:62701547-62701566 Msa1029290:intron 45.0%
CCAAAGTTGTTCCCATTTCC+TGG + chr7_1:62701856-62701875 None:intergenic 45.0%
CCAGGAAATGGGAACAACTT+TGG - chr7_1:62701853-62701872 Msa1029290:intron 45.0%
CACGTATGGAATCTGTACCT+AGG + chr7_1:62701935-62701954 None:intergenic 45.0%
CTAGGTACAGATTCCATACG+TGG - chr7_1:62701933-62701952 Msa1029290:three_prime_UTR 45.0%
TCCATACGTGGCTTACTGAA+AGG - chr7_1:62701945-62701964 Msa1029290:three_prime_UTR 45.0%
CCATACGTGGCTTACTGAAA+GGG - chr7_1:62701946-62701965 Msa1029290:three_prime_UTR 45.0%
CATACGTGGCTTACTGAAAG+GGG - chr7_1:62701947-62701966 Msa1029290:three_prime_UTR 45.0%
ATCCAGCTGCTCCAAAACAT+TGG - chr7_1:62702050-62702069 Msa1029290:intron 45.0%
!!! AACCAATGTTTTGGAGCAGC+TGG + chr7_1:62702055-62702074 None:intergenic 45.0%
GGGAAAACACCAAGGCAATT+AGG + chr7_1:62702183-62702202 None:intergenic 45.0%
CTTAGGGTATATGCTTGGGA+GGG + chr7_1:62702203-62702222 None:intergenic 45.0%
ACTTAGGGTATATGCTTGGG+AGG + chr7_1:62702204-62702223 None:intergenic 45.0%
TGATAGTTTCCAGTGAGGAG+GGG + chr7_1:62702514-62702533 None:intergenic 45.0%
GTGATAGTTTCCAGTGAGGA+GGG + chr7_1:62702515-62702534 None:intergenic 45.0%
AGTGATAGTTTCCAGTGAGG+AGG + chr7_1:62702516-62702535 None:intergenic 45.0%
AGGAGTGATAGTTTCCAGTG+AGG + chr7_1:62702519-62702538 None:intergenic 45.0%
GGCACGAAAGATTGGATTCA+AGG - chr7_1:62702985-62703004 Msa1029290:intron 45.0%
CGTAGTTGATTGTTGGCATG+TGG - chr7_1:62703338-62703357 Msa1029290:intron 45.0%
AACTACTACTAATGCCCTCC+CGG + chr7_1:62703898-62703917 None:intergenic 45.0%
TACTCTCGCAACACTACTAC+AGG + chr7_1:62704441-62704460 None:intergenic 45.0%
TAGTAGTGTTGCGAGAGTAG+AGG - chr7_1:62704442-62704461 Msa1029290:CDS 45.0%
CGAGAGTAGAGGTTCTATCA+TGG - chr7_1:62704453-62704472 Msa1029290:CDS 45.0%
! CTGGCTAACATGACTTTTCC+TGG - chr7_1:62704529-62704548 Msa1029290:CDS 45.0%
GGCAGCAGCAAAAGCAAAAA+AGG + chr7_1:62704651-62704670 None:intergenic 45.0%
! CCCACTTGCATAGCCTTTTA+TGG + chr7_1:62704767-62704786 None:intergenic 45.0%
!! GTCTGATGGGGATTTTGGAG+AGG + chr7_1:62700494-62700513 None:intergenic 50.0%
GTTGTGGAGGTAATCGGTGA+GGG + chr7_1:62700550-62700569 None:intergenic 50.0%
TGTTGTGGAGGTAATCGGTG+AGG + chr7_1:62700551-62700570 None:intergenic 50.0%
GGGTTTCCTTGGGAGAAGTT+AGG - chr7_1:62700843-62700862 Msa1029290:three_prime_UTR 50.0%
ATGTAGGAGAACTCATGGGG+AGG - chr7_1:62701180-62701199 Msa1029290:intron 50.0%
TGGTGGAAAGAAGGAGGAAG+TGG - chr7_1:62701271-62701290 Msa1029290:intron 50.0%
! TGGGCATTATCGGTTGCTAG+CGG - chr7_1:62701514-62701533 Msa1029290:intron 50.0%
GGGAACAACTTTGGACTGTC+TGG - chr7_1:62701862-62701881 Msa1029290:intron 50.0%
CCCTTTCAGTAAGCCACGTA+TGG + chr7_1:62701949-62701968 None:intergenic 50.0%
! GTAGAAATGAGTTGGCGGTG+AGG + chr7_1:62702492-62702511 None:intergenic 50.0%
! GAGGGGTAGAAATGAGTTGG+CGG + chr7_1:62702497-62702516 None:intergenic 50.0%
GAGGAGGGGTAGAAATGAGT+TGG + chr7_1:62702500-62702519 None:intergenic 50.0%
TCATTTCTACCCCTCCTCAC+TGG - chr7_1:62702502-62702521 Msa1029290:exon 50.0%
GGCGATGAGGAACAAATCAG+AGG + chr7_1:62702546-62702565 None:intergenic 50.0%
GTGCCCCCAGTAACAACATT+AGG + chr7_1:62702970-62702989 None:intergenic 50.0%
! TTACTGGGGGCACGAAAGAT+TGG - chr7_1:62702977-62702996 Msa1029290:intron 50.0%
!!! TCCTGCTGGCTTTTCAGCAT+AGG - chr7_1:62703667-62703686 Msa1029290:CDS 50.0%
!!! TGCTGGCTTTTCAGCATAGG+CGG - chr7_1:62703670-62703689 Msa1029290:CDS 50.0%
TTGACTTAGTATGCACCGGG+AGG - chr7_1:62703880-62703899 Msa1029290:CDS 50.0%
TGACTTAGTATGCACCGGGA+GGG - chr7_1:62703881-62703900 Msa1029290:CDS 50.0%
TCCAGTCTAGAGGTGGTGTT+TGG - chr7_1:62704503-62704522 Msa1029290:CDS 50.0%
TCCAAACACCACCTCTAGAC+TGG + chr7_1:62704507-62704526 None:intergenic 50.0%
AGTCTAGAGGTGGTGTTTGG+AGG - chr7_1:62704506-62704525 Msa1029290:CDS 50.0%
TGGTGGAAAAATGGCGGTGG+AGG + chr7_1:62700449-62700468 None:intergenic 55.0%
!! TGGTGGTGGAAAAATGGCGG+TGG + chr7_1:62700452-62700471 None:intergenic 55.0%
CGGCACAAGCAGTGAGTTAC+AGG - chr7_1:62701706-62701725 Msa1029290:intron 55.0%
GCTTGGGAGGGAAAACACCA+AGG + chr7_1:62702191-62702210 None:intergenic 55.0%
GCCTATGCTGAAAAGCCAGC+AGG + chr7_1:62703671-62703690 None:intergenic 55.0%
!!! GCTGGCTTTTCAGCATAGGC+GGG - chr7_1:62703671-62703690 Msa1029290:CDS 55.0%
! CTTTTCAGCATAGGCGGGTC+TGG - chr7_1:62703676-62703695 Msa1029290:CDS 55.0%
TAGAGGTGGTGTTTGGAGGC+TGG - chr7_1:62704510-62704529 Msa1029290:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 62700435 62704836 62700435 ID=Msa1029290;Name=Msa1029290
chr7_1 mRNA 62700435 62704836 62700435 ID=Msa1029290-mRNA-1;Parent=Msa1029290;Name=Msa1029290-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0.75|0.6|1|0.5|0.4|5|656|480
chr7_1 exon 62700435 62700896 62700435 ID=Msa1029290-mRNA-1:exon:13508;Parent=Msa1029290-mRNA-1
chr7_1 exon 62701867 62702022 62701867 ID=Msa1029290-mRNA-1:exon:13507;Parent=Msa1029290-mRNA-1
chr7_1 exon 62702480 62702557 62702480 ID=Msa1029290-mRNA-1:exon:13506;Parent=Msa1029290-mRNA-1
chr7_1 exon 62702651 62702703 62702651 ID=Msa1029290-mRNA-1:exon:13505;Parent=Msa1029290-mRNA-1
chr7_1 exon 62703487 62704836 62703487 ID=Msa1029290-mRNA-1:exon:13504;Parent=Msa1029290-mRNA-1
chr7_1 CDS 62703487 62704836 62703487 ID=Msa1029290-mRNA-1:cds;Parent=Msa1029290-mRNA-1
chr7_1 CDS 62702651 62702703 62702651 ID=Msa1029290-mRNA-1:cds;Parent=Msa1029290-mRNA-1
chr7_1 CDS 62702518 62702557 62702518 ID=Msa1029290-mRNA-1:cds;Parent=Msa1029290-mRNA-1
chr7_1 three_prime_UTR 62702480 62702517 62702480 ID=Msa1029290-mRNA-1:three_prime_utr;Parent=Msa1029290-mRNA-1
chr7_1 three_prime_UTR 62701867 62702022 62701867 ID=Msa1029290-mRNA-1:three_prime_utr;Parent=Msa1029290-mRNA-1
chr7_1 three_prime_UTR 62700435 62700896 62700435 ID=Msa1029290-mRNA-1:three_prime_utr;Parent=Msa1029290-mRNA-1
Gene Sequence

>Msa1029290

ATGTTCTTCTTCCTCCACCGCCATTTTTCCACCACCACAAAAACCAACTTCCCAAACCTCTCCAAAATCCCCATCAGACACAGAAACCATGTCATTCACGAAGCTCAAAAAGCCCTCACCGATTACCTCCACAACACCAAATCCATACCCTTCATCTATGCAGAACACATTGGCAACAACACTCTCTGTTCCCTCACAAATCTCATTTCAAAGGTACATTTTTCACTACCCACTTTCTCAAATAACATTAAAAGAGTCATTAGGTTTCACCCCATTAACGAATTTGAAGTCTTTTTTGAAAGCATAGGGATAGATTATACTTTGGTTTCTGATTTGTTACCGAATGATAAGCTGTTCTTTTCAGAGGATATGACTCTTTTAGAAGCTGCTTGTGTGCTTTGTGATTTTGGGTTTCCTTGGGAGAAGTTAGGTGTGTTGTATATGGAGAAGAGTTCTATATTTGGGAAAAGTGTTGAAGAGTTGAAATTGAGGCTTTGTTGGTTTAAAAGATTTGGTTTTGGTAATGTTGAAGTTATTGGGATTTGTTTGGCTTTTCCTTTTGTTTTGAGTGAGGAAGTGGGTCAAATTCAAAAGGGTGTTTTTGGAATTGATGAGTTGTTTAGTGATCTAAAGTTAATTTTCTTGGATAATTCTTTGGGGAGTTATGTTGAGGGAAATGTAGATTCATGGCATGAGGTGTGTAGAAAGTTGCGATTTTTTTACGATTTGAATGGATGGAAGGGTAATGTAGGAGAACTCATGGGGAGGAATAAGAGTATATTTGTTGATCACAAAGAAGAGGAGATAGTACATAAAGTAGAGTATTTCTGTGGATTTGGTGGAAAGAAGGAGGAAGTGGCTTTATTGATTCTGCAATGTCCTGAAGCGTTGAAGCTTGATTTGGAGAAGACGGTGATTAATGTGTTGGAGCTGTTGAAACACTTTGGCATGAGCTCTAAAGATTTGGAGGATGTTATTGAAAATTTTGGTCATGTGTTGGGAACAATTAGAATGGTTAATCTACCAAATGTGATGAGAGCTATGGGTTTGCAAGAATGGTTCTGTGATAAGTTAAAGGGTGGGCATTATCGGTTGCTAGCGGATTATATCACAAGTGATCGCAATGAAGACCGGGATAAAGATTATCAAGATGGTTTGAGGAGAATTCACATTTCACGAGCTCGAGTTCATAGCATTAATAAGTTAAATTTCTTACATAGATTAGGCTTTGGAGAAAATGCATTGACTATGAATCTTTTGGATCGTTTGCACGGCACAAGCAGTGAGTTACAGGAAAGATTTGACTGCCTTCTACGCTCAAGAATTGAATTCTCAAAGCTCTGCATGATGAAAGTTATAGTTGATTTGTTCCTTTCGGTGACGATTGAGTTTTCACAGTTTAGGATGCTAATTTCTACTACCTCAATCTTTTTTCAGCTATGA
Protein sequence

>Msa1029290

MFFFLHRHFSTTTKTNFPNLSKIPIRHRNHVIHEAQKALTDYLHNTKSIPFIYAEHIGNNTLCSLTNLISKVHFSLPTFSNNIKRVIRFHPINEFEVFFESIGIDYTLVSDLLPNDKLFFSEDMTLLEAACVLCDFGFPWEKLGVLYMEKSSIFGKSVEELKLRLCWFKRFGFGNVEVIGICLAFPFVLSEEVGQIQKGVFGIDELFSDLKLIFLDNSLGSYVEGNVDSWHEVCRKLRFFYDLNGWKGNVGELMGRNKSIFVDHKEEEIVHKVEYFCGFGGKKEEVALLILQCPEALKLDLEKTVINVLELLKHFGMSSKDLEDVIENFGHVLGTIRMVNLPNVMRAMGLQEWFCDKLKGGHYRLLADYITSDRNEDRDKDYQDGLRRIHISRARVHSINKLNFLHRLGFGENALTMNLLDRLHGTSSELQERFDCLLRSRIEFSKLCMMKVIVDLFLSVTIEFSQFRMLISTTSIFFQL*