AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1029670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1029670 MtrunA17_Chr7g0250141 62.215 307 89 6 39 325 22 321 1.01e-114 334
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 79 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATCTTTAGTTGTCTATT+TGG 0.138020 7_1:-63158641 None:intergenic
TTACGTTTGTGCTGAAATTT+AGG 0.171556 7_1:-63157981 None:intergenic
TATAGTTAGCATTATCTAAT+TGG 0.231671 7_1:+63158575 Msa1029670:three_prime_UTR
TCCATATGCACCATGATTTC+CGG 0.234037 7_1:+63158535 Msa1029670:three_prime_UTR
TACTCGGAATGGTTGTCTTT+GGG 0.248890 7_1:+63158285 Msa1029670:CDS
AGGTCCAACGTGGTCAAATA+TGG 0.249406 7_1:+63158096 Msa1029670:CDS
TTAAAAGATGAAACAGATTA+TGG 0.260259 7_1:-63156701 None:intergenic
AATCTTAAACCCATTCATTA+TGG 0.260718 7_1:+63157479 Msa1029670:CDS
CATCCAACAAGAGGATTTCT+TGG 0.273651 7_1:-63157271 None:intergenic
CCTCTTTATCAACGCAAATA+AGG 0.285430 7_1:-63157788 None:intergenic
GAGTGTTGTGTTTATCTTCT+GGG 0.288933 7_1:+63158208 Msa1029670:CDS
ATACTCGGAATGGTTGTCTT+TGG 0.312772 7_1:+63158284 Msa1029670:CDS
TAGCTTCGTTCAAGATTGTT+AGG 0.328816 7_1:+63156841 Msa1029670:five_prime_UTR
TTCAAGTACATGCTGCAATT+TGG 0.337988 7_1:+63157236 Msa1029670:CDS
AGAGTGTTGTGTTTATCTTC+TGG 0.340356 7_1:+63158207 Msa1029670:CDS
TGAGCAACTTACCTGGATAT+TGG 0.346014 7_1:-63157513 None:intergenic
CGATCCACGTGTCGAAGAAA+AGG 0.367683 7_1:-63158058 None:intergenic
AATATTTACGATTTATGAGT+TGG 0.387542 7_1:+63157196 Msa1029670:CDS
GAACCAAGAAATCCTCTTGT+TGG 0.390830 7_1:+63157268 Msa1029670:CDS
ACGGTTTCCTTGTGCTTAGT+TGG 0.405377 7_1:-63157945 None:intergenic
TGAAATTTAGGATATAATAT+TGG 0.413677 7_1:-63157969 None:intergenic
GTAATCTTGACCATTACATT+TGG 0.426212 7_1:+63158032 Msa1029670:CDS
CCTTATTTGCGTTGATAAAG+AGG 0.426934 7_1:+63157788 Msa1029670:CDS
CTGCTTTGCGTATTGCTGTT+GGG 0.429582 7_1:+63158429 Msa1029670:three_prime_UTR
TAATTAAGACAAATGCTTTG+TGG 0.431922 7_1:+63158469 Msa1029670:three_prime_UTR
GCCGGAAATCATGGTGCATA+TGG 0.435809 7_1:-63158536 None:intergenic
GACCACGTTGGACCTTCATA+AGG 0.436592 7_1:-63158088 None:intergenic
TAAAAGATGAAACAGATTAT+GGG 0.446912 7_1:-63156700 None:intergenic
ACCACGTTGGACCTTCATAA+GGG 0.454092 7_1:-63158087 None:intergenic
TTGCTGTTGGGCACTAAACT+TGG 0.457266 7_1:+63158441 Msa1029670:three_prime_UTR
GGCTTCAAACCATAATGAAT+GGG 0.460583 7_1:-63157488 None:intergenic
AGGCTTCAAACCATAATGAA+TGG 0.471617 7_1:-63157489 None:intergenic
ACTCGGAATGGTTGTCTTTG+GGG 0.473197 7_1:+63158286 Msa1029670:CDS
AAGACAACCATTCCGAGTAT+TGG 0.477069 7_1:-63158281 None:intergenic
AATCTTAGAATGTTGATTTG+AGG 0.478486 7_1:-63156785 None:intergenic
ATGTTTAAGATTTCACGCTT+AGG 0.481504 7_1:+63157455 Msa1029670:CDS
ATGTGAACCTGAGATATTGC+AGG 0.482101 7_1:-63156671 None:intergenic
ACTGCTTTGCGTATTGCTGT+TGG 0.491166 7_1:+63158428 Msa1029670:three_prime_UTR
GTTGCTATAATGATTCTTGT+TGG 0.493716 7_1:+63158164 Msa1029670:CDS
TGTGCAAATCTGAAAATCTT+CGG 0.496767 7_1:+63157309 Msa1029670:CDS
TAATGTAATATACCTTTCCT+TGG 0.499043 7_1:+63158401 Msa1029670:three_prime_UTR
TTGCAATCCTGCAATATCTC+AGG 0.499278 7_1:+63156664 Msa1029670:five_prime_UTR
TTTGAAGCCTTCCAATATCC+AGG 0.501125 7_1:+63157502 Msa1029670:CDS
AAGTACATGCTGCAATTTGG+TGG 0.504000 7_1:+63157239 Msa1029670:CDS
AAAGTGCTGGCCGGAAATCA+TGG 0.508063 7_1:-63158545 None:intergenic
ACACAACCATTAGCCAAGGT+TGG 0.509145 7_1:+63157876 Msa1029670:CDS
AAATATGGGTCTCCTCGCTC+AGG 0.509899 7_1:+63158111 Msa1029670:CDS
GAAAAGGGAACCAAATGTAA+TGG 0.519093 7_1:-63158042 None:intergenic
GATCCACGTGTCGAAGAAAA+GGG 0.523570 7_1:-63158057 None:intergenic
GGTCCAACGTGGTCAAATAT+GGG 0.526486 7_1:+63158097 Msa1029670:CDS
TTTCAAGTTCATCCAACAAG+AGG 0.532536 7_1:-63157280 None:intergenic
AGCAAATAAAGAGCACTACA+TGG 0.540062 7_1:+63157811 Msa1029670:CDS
GACGAATGCATCACCACCGT+TGG 0.543227 7_1:+63158507 Msa1029670:three_prime_UTR
CAAATCTGAAAATCTTCGGC+GGG 0.544221 7_1:+63157313 Msa1029670:CDS
TAAATTTCAGCACAAACGTA+AGG 0.550229 7_1:+63157983 Msa1029670:CDS
AGTTGGATTATTACTACTAG+TGG 0.555390 7_1:-63157928 None:intergenic
GTCTTTGGGGTGTTTGCTCG+TGG 0.556626 7_1:+63158299 Msa1029670:CDS
CAACTTACCTGGATATTGGA+AGG 0.568102 7_1:-63157509 None:intergenic
AAAATCAAGAGTTGATCAGA+AGG 0.572726 7_1:+63157393 Msa1029670:CDS
ATGTTGATTTGAGGATGAAA+CGG 0.585785 7_1:-63156776 None:intergenic
GATCGAGCCATCCCTTATGA+AGG 0.587003 7_1:+63158076 Msa1029670:CDS
ACACTCTGCACACGGACGAA+TGG 0.589264 7_1:-63158191 None:intergenic
AACAAGAATCATTATAGCAA+CGG 0.594551 7_1:-63158162 None:intergenic
CAACACATCAAATGATCACA+TGG 0.596183 7_1:-63156644 None:intergenic
TTTGTGGTACGATACGAGAA+TGG 0.597174 7_1:+63158485 Msa1029670:three_prime_UTR
ACAATGTGTGTTCCAATACT+CGG 0.599011 7_1:+63158269 Msa1029670:CDS
CGTTGGACCTTCATAAGGGA+TGG 0.600614 7_1:-63158083 None:intergenic
ATTTACACAACCATTAGCCA+AGG 0.606338 7_1:+63157872 Msa1029670:CDS
TAAACACAACACTCTGCACA+CGG 0.624793 7_1:-63158199 None:intergenic
TTTAGGATATAATATTGGCA+CGG 0.638266 7_1:-63157964 None:intergenic
GTGTGTTCCAATACTCGGAA+TGG 0.643820 7_1:+63158274 Msa1029670:CDS
GCAAATCTGAAAATCTTCGG+CGG 0.650363 7_1:+63157312 Msa1029670:CDS
TAATAATCCAACTAAGCACA+AGG 0.666385 7_1:+63157938 Msa1029670:CDS
TACGCAAAGCAGTACTACCA+AGG 0.669016 7_1:-63158418 None:intergenic
AGACCCATATTTGACCACGT+TGG 0.670283 7_1:-63158100 None:intergenic
GTGCATATGGAATAAACCAA+CGG 0.670297 7_1:-63158523 None:intergenic
AAAGCAGTACTACCAAGGAA+AGG 0.672840 7_1:-63158413 None:intergenic
TCCCTTATGAAGGTCCAACG+TGG 0.728134 7_1:+63158086 Msa1029670:CDS
CATATGGAATAAACCAACGG+TGG 0.747921 7_1:-63158520 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATTTTAAATATATTTGTC+AGG - chr7_1:63156754-63156773 None:intergenic 15.0%
!! TATTAAATCAAAACATTTCA+AGG - chr7_1:63156941-63156960 None:intergenic 15.0%
!!! TGAAATTTAGGATATAATAT+TGG - chr7_1:63157972-63157991 None:intergenic 15.0%
!!! AGATTTTAAATATATTTGTC+AGG - chr7_1:63156754-63156773 None:intergenic 15.0%
!! TATTAAATCAAAACATTTCA+AGG - chr7_1:63156941-63156960 None:intergenic 15.0%
!!! TGAAATTTAGGATATAATAT+TGG - chr7_1:63157972-63157991 None:intergenic 15.0%
!! TAAAAGATGAAACAGATTAT+GGG - chr7_1:63156703-63156722 None:intergenic 20.0%
!! TTAAAAGATGAAACAGATTA+TGG - chr7_1:63156704-63156723 None:intergenic 20.0%
!! TTTCAGAAAGAAAAAAGAAT+TGG - chr7_1:63156911-63156930 None:intergenic 20.0%
!! TATGTTGAAATTTATGAAAC+TGG + chr7_1:63156992-63157011 Msa1029670:intron 20.0%
!! AATATTTACGATTTATGAGT+TGG + chr7_1:63157196-63157215 Msa1029670:CDS 20.0%
!! CTAAGAATAATAGTAAAAGT+CGG - chr7_1:63157621-63157640 None:intergenic 20.0%
!! AATTCAATGTAAAAAACACA+CGG - chr7_1:63157855-63157874 None:intergenic 20.0%
!!! TGGAAAATTTTAGAGAATAT+TGG + chr7_1:63158319-63158338 Msa1029670:exon 20.0%
!! TATAGTTAGCATTATCTAAT+TGG + chr7_1:63158575-63158594 Msa1029670:three_prime_UTR 20.0%
!! AAAATCTTTAGTTGTCTATT+TGG - chr7_1:63158644-63158663 None:intergenic 20.0%
!! TAAAAGATGAAACAGATTAT+GGG - chr7_1:63156703-63156722 None:intergenic 20.0%
!! TTAAAAGATGAAACAGATTA+TGG - chr7_1:63156704-63156723 None:intergenic 20.0%
!! TTTCAGAAAGAAAAAAGAAT+TGG - chr7_1:63156911-63156930 None:intergenic 20.0%
!! TATGTTGAAATTTATGAAAC+TGG + chr7_1:63156992-63157011 Msa1029670:intron 20.0%
!! AATATTTACGATTTATGAGT+TGG + chr7_1:63157196-63157215 Msa1029670:CDS 20.0%
!! CTAAGAATAATAGTAAAAGT+CGG - chr7_1:63157621-63157640 None:intergenic 20.0%
!! AATTCAATGTAAAAAACACA+CGG - chr7_1:63157855-63157874 None:intergenic 20.0%
!!! TGGAAAATTTTAGAGAATAT+TGG + chr7_1:63158319-63158338 Msa1029670:exon 20.0%
!! TATAGTTAGCATTATCTAAT+TGG + chr7_1:63158575-63158594 Msa1029670:three_prime_UTR 20.0%
!! AAAATCTTTAGTTGTCTATT+TGG - chr7_1:63158644-63158663 None:intergenic 20.0%
!! ATAACTTTTACTGTGGAATT+TGG - chr7_1:63156731-63156750 None:intergenic 25.0%
!!! AATCTTAGAATGTTGATTTG+AGG - chr7_1:63156788-63156807 None:intergenic 25.0%
! TTCATAAACCCTAACAATAT+AGG + chr7_1:63157027-63157046 Msa1029670:intron 25.0%
!!! ATTTCTTTTTCATGGATAAC+AGG + chr7_1:63157150-63157169 Msa1029670:CDS 25.0%
!!! TTTCTTTTTCATGGATAACA+GGG + chr7_1:63157151-63157170 Msa1029670:CDS 25.0%
! AATCTTAAACCCATTCATTA+TGG + chr7_1:63157479-63157498 Msa1029670:CDS 25.0%
! TTAGAAAGACAGATATTACA+AGG + chr7_1:63157637-63157656 Msa1029670:intron 25.0%
! AAAAAAATCAAAATGAGTCC+TGG - chr7_1:63157667-63157686 None:intergenic 25.0%
!! TTTAGGATATAATATTGGCA+CGG - chr7_1:63157967-63157986 None:intergenic 25.0%
! AACAAGAATCATTATAGCAA+CGG - chr7_1:63158165-63158184 None:intergenic 25.0%
! TAATGTAATATACCTTTCCT+TGG + chr7_1:63158401-63158420 Msa1029670:three_prime_UTR 25.0%
! TAATTAAGACAAATGCTTTG+TGG + chr7_1:63158469-63158488 Msa1029670:three_prime_UTR 25.0%
!! ATAACTTTTACTGTGGAATT+TGG - chr7_1:63156731-63156750 None:intergenic 25.0%
!!! AATCTTAGAATGTTGATTTG+AGG - chr7_1:63156788-63156807 None:intergenic 25.0%
! TTCATAAACCCTAACAATAT+AGG + chr7_1:63157027-63157046 Msa1029670:intron 25.0%
!!! ATTTCTTTTTCATGGATAAC+AGG + chr7_1:63157150-63157169 Msa1029670:CDS 25.0%
!!! TTTCTTTTTCATGGATAACA+GGG + chr7_1:63157151-63157170 Msa1029670:CDS 25.0%
! AATCTTAAACCCATTCATTA+TGG + chr7_1:63157479-63157498 Msa1029670:CDS 25.0%
! TTAGAAAGACAGATATTACA+AGG + chr7_1:63157637-63157656 Msa1029670:intron 25.0%
! AAAAAAATCAAAATGAGTCC+TGG - chr7_1:63157667-63157686 None:intergenic 25.0%
!! TTTAGGATATAATATTGGCA+CGG - chr7_1:63157967-63157986 None:intergenic 25.0%
! AACAAGAATCATTATAGCAA+CGG - chr7_1:63158165-63158184 None:intergenic 25.0%
! TAATGTAATATACCTTTCCT+TGG + chr7_1:63158401-63158420 Msa1029670:three_prime_UTR 25.0%
! TAATTAAGACAAATGCTTTG+TGG + chr7_1:63158469-63158488 Msa1029670:three_prime_UTR 25.0%
!! ATGTTGATTTGAGGATGAAA+CGG - chr7_1:63156779-63156798 None:intergenic 30.0%
AAGAGAATAGGAAATTGGAA+TGG - chr7_1:63156886-63156905 None:intergenic 30.0%
AAAGAATTGGACAAGAGAAT+AGG - chr7_1:63156898-63156917 None:intergenic 30.0%
TGCTACATCCTATATTGTTA+GGG - chr7_1:63157038-63157057 None:intergenic 30.0%
ATGCTACATCCTATATTGTT+AGG - chr7_1:63157039-63157058 None:intergenic 30.0%
GATGTAGCATAATATAGCTT+AGG + chr7_1:63157049-63157068 Msa1029670:intron 30.0%
!! GTGTACACATTTCTTTTTCA+TGG + chr7_1:63157142-63157161 Msa1029670:CDS 30.0%
!! TTCTTTTTCATGGATAACAG+GGG + chr7_1:63157152-63157171 Msa1029670:CDS 30.0%
TGTGCAAATCTGAAAATCTT+CGG + chr7_1:63157309-63157328 Msa1029670:CDS 30.0%
! TGAAGAAACAAATTTTCACG+TGG + chr7_1:63157357-63157376 Msa1029670:CDS 30.0%
! GAAGAAACAAATTTTCACGT+GGG + chr7_1:63157358-63157377 Msa1029670:CDS 30.0%
! AAAATCAAGAGTTGATCAGA+AGG + chr7_1:63157393-63157412 Msa1029670:CDS 30.0%
! ATGTTTAAGATTTCACGCTT+AGG + chr7_1:63157455-63157474 Msa1029670:CDS 30.0%
GTAAAAGTCGGTCAAAAAAA+TGG - chr7_1:63157609-63157628 None:intergenic 30.0%
AGTTGGATTATTACTACTAG+TGG - chr7_1:63157931-63157950 None:intergenic 30.0%
TAATAATCCAACTAAGCACA+AGG + chr7_1:63157938-63157957 Msa1029670:CDS 30.0%
TTACGTTTGTGCTGAAATTT+AGG - chr7_1:63157984-63158003 None:intergenic 30.0%
TAAATTTCAGCACAAACGTA+AGG + chr7_1:63157983-63158002 Msa1029670:CDS 30.0%
GTAATCTTGACCATTACATT+TGG + chr7_1:63158032-63158051 Msa1029670:CDS 30.0%
GTTGCTATAATGATTCTTGT+TGG + chr7_1:63158164-63158183 Msa1029670:CDS 30.0%
ACTATAAAAAGTCAAAGTGC+TGG - chr7_1:63158561-63158580 None:intergenic 30.0%
!! ATGTTGATTTGAGGATGAAA+CGG - chr7_1:63156779-63156798 None:intergenic 30.0%
AAGAGAATAGGAAATTGGAA+TGG - chr7_1:63156886-63156905 None:intergenic 30.0%
AAAGAATTGGACAAGAGAAT+AGG - chr7_1:63156898-63156917 None:intergenic 30.0%
TGCTACATCCTATATTGTTA+GGG - chr7_1:63157038-63157057 None:intergenic 30.0%
ATGCTACATCCTATATTGTT+AGG - chr7_1:63157039-63157058 None:intergenic 30.0%
GATGTAGCATAATATAGCTT+AGG + chr7_1:63157049-63157068 Msa1029670:intron 30.0%
!! GTGTACACATTTCTTTTTCA+TGG + chr7_1:63157142-63157161 Msa1029670:CDS 30.0%
!! TTCTTTTTCATGGATAACAG+GGG + chr7_1:63157152-63157171 Msa1029670:CDS 30.0%
TGTGCAAATCTGAAAATCTT+CGG + chr7_1:63157309-63157328 Msa1029670:CDS 30.0%
! TGAAGAAACAAATTTTCACG+TGG + chr7_1:63157357-63157376 Msa1029670:CDS 30.0%
! GAAGAAACAAATTTTCACGT+GGG + chr7_1:63157358-63157377 Msa1029670:CDS 30.0%
! AAAATCAAGAGTTGATCAGA+AGG + chr7_1:63157393-63157412 Msa1029670:CDS 30.0%
! ATGTTTAAGATTTCACGCTT+AGG + chr7_1:63157455-63157474 Msa1029670:CDS 30.0%
GTAAAAGTCGGTCAAAAAAA+TGG - chr7_1:63157609-63157628 None:intergenic 30.0%
AGTTGGATTATTACTACTAG+TGG - chr7_1:63157931-63157950 None:intergenic 30.0%
TAATAATCCAACTAAGCACA+AGG + chr7_1:63157938-63157957 Msa1029670:CDS 30.0%
TTACGTTTGTGCTGAAATTT+AGG - chr7_1:63157984-63158003 None:intergenic 30.0%
TAAATTTCAGCACAAACGTA+AGG + chr7_1:63157983-63158002 Msa1029670:CDS 30.0%
GTAATCTTGACCATTACATT+TGG + chr7_1:63158032-63158051 Msa1029670:CDS 30.0%
GTTGCTATAATGATTCTTGT+TGG + chr7_1:63158164-63158183 Msa1029670:CDS 30.0%
ACTATAAAAAGTCAAAGTGC+TGG - chr7_1:63158561-63158580 None:intergenic 30.0%
CAACACATCAAATGATCACA+TGG - chr7_1:63156647-63156666 None:intergenic 35.0%
! TGTCAGGATAACTTTTACTG+TGG - chr7_1:63156738-63156757 None:intergenic 35.0%
TAGCTTCGTTCAAGATTGTT+AGG + chr7_1:63156841-63156860 Msa1029670:five_prime_UTR 35.0%
TGGACAAGAGAATAGGAAAT+TGG - chr7_1:63156891-63156910 None:intergenic 35.0%
!! TCTTTTTCATGGATAACAGG+GGG + chr7_1:63157153-63157172 Msa1029670:CDS 35.0%
TTCAAGTACATGCTGCAATT+TGG + chr7_1:63157236-63157255 Msa1029670:CDS 35.0%
!! TTTCAAGTTCATCCAACAAG+AGG - chr7_1:63157283-63157302 None:intergenic 35.0%
GGCTTCAAACCATAATGAAT+GGG - chr7_1:63157491-63157510 None:intergenic 35.0%
AGGCTTCAAACCATAATGAA+TGG - chr7_1:63157492-63157511 None:intergenic 35.0%
! AATAAGTTGAGCAACTTACC+TGG - chr7_1:63157523-63157542 None:intergenic 35.0%
GTCGGTCAAAAAAATGGTAA+TGG - chr7_1:63157603-63157622 None:intergenic 35.0%
CAGATATTACAAGGAAATCC+AGG + chr7_1:63157646-63157665 Msa1029670:intron 35.0%
GTGTATAGAAAGTTAGAAGG+AGG - chr7_1:63157713-63157732 None:intergenic 35.0%
GCAGTGTATAGAAAGTTAGA+AGG - chr7_1:63157716-63157735 None:intergenic 35.0%
CCTCTTTATCAACGCAAATA+AGG - chr7_1:63157791-63157810 None:intergenic 35.0%
! CCTTATTTGCGTTGATAAAG+AGG + chr7_1:63157788-63157807 Msa1029670:CDS 35.0%
!! AGCAAATAAAGAGCACTACA+TGG + chr7_1:63157811-63157830 Msa1029670:CDS 35.0%
ATTTACACAACCATTAGCCA+AGG + chr7_1:63157872-63157891 Msa1029670:CDS 35.0%
! ATTTTTCCAACCTTGGCTAA+TGG - chr7_1:63157885-63157904 None:intergenic 35.0%
!!! TGAAGTCATTTTTCCAACCT+TGG - chr7_1:63157892-63157911 None:intergenic 35.0%
GAAAAGGGAACCAAATGTAA+TGG - chr7_1:63158045-63158064 None:intergenic 35.0%
!!! TTGGTTTTATGGCGTTTGTT+TGG + chr7_1:63158138-63158157 Msa1029670:CDS 35.0%
!!! TGGTTTTATGGCGTTTGTTT+GGG + chr7_1:63158139-63158158 Msa1029670:CDS 35.0%
!! AGAGTGTTGTGTTTATCTTC+TGG + chr7_1:63158207-63158226 Msa1029670:CDS 35.0%
! GAGTGTTGTGTTTATCTTCT+GGG + chr7_1:63158208-63158227 Msa1029670:CDS 35.0%
ACAATGTGTGTTCCAATACT+CGG + chr7_1:63158269-63158288 Msa1029670:CDS 35.0%
GTGCATATGGAATAAACCAA+CGG - chr7_1:63158526-63158545 None:intergenic 35.0%
CAACACATCAAATGATCACA+TGG - chr7_1:63156647-63156666 None:intergenic 35.0%
! TGTCAGGATAACTTTTACTG+TGG - chr7_1:63156738-63156757 None:intergenic 35.0%
TAGCTTCGTTCAAGATTGTT+AGG + chr7_1:63156841-63156860 Msa1029670:five_prime_UTR 35.0%
TGGACAAGAGAATAGGAAAT+TGG - chr7_1:63156891-63156910 None:intergenic 35.0%
!! TCTTTTTCATGGATAACAGG+GGG + chr7_1:63157153-63157172 Msa1029670:CDS 35.0%
TTCAAGTACATGCTGCAATT+TGG + chr7_1:63157236-63157255 Msa1029670:CDS 35.0%
!! TTTCAAGTTCATCCAACAAG+AGG - chr7_1:63157283-63157302 None:intergenic 35.0%
GGCTTCAAACCATAATGAAT+GGG - chr7_1:63157491-63157510 None:intergenic 35.0%
AGGCTTCAAACCATAATGAA+TGG - chr7_1:63157492-63157511 None:intergenic 35.0%
! AATAAGTTGAGCAACTTACC+TGG - chr7_1:63157523-63157542 None:intergenic 35.0%
GTCGGTCAAAAAAATGGTAA+TGG - chr7_1:63157603-63157622 None:intergenic 35.0%
CAGATATTACAAGGAAATCC+AGG + chr7_1:63157646-63157665 Msa1029670:intron 35.0%
GTGTATAGAAAGTTAGAAGG+AGG - chr7_1:63157713-63157732 None:intergenic 35.0%
GCAGTGTATAGAAAGTTAGA+AGG - chr7_1:63157716-63157735 None:intergenic 35.0%
CCTCTTTATCAACGCAAATA+AGG - chr7_1:63157791-63157810 None:intergenic 35.0%
! CCTTATTTGCGTTGATAAAG+AGG + chr7_1:63157788-63157807 Msa1029670:CDS 35.0%
!! AGCAAATAAAGAGCACTACA+TGG + chr7_1:63157811-63157830 Msa1029670:CDS 35.0%
ATTTACACAACCATTAGCCA+AGG + chr7_1:63157872-63157891 Msa1029670:CDS 35.0%
! ATTTTTCCAACCTTGGCTAA+TGG - chr7_1:63157885-63157904 None:intergenic 35.0%
!!! TGAAGTCATTTTTCCAACCT+TGG - chr7_1:63157892-63157911 None:intergenic 35.0%
GAAAAGGGAACCAAATGTAA+TGG - chr7_1:63158045-63158064 None:intergenic 35.0%
!!! TTGGTTTTATGGCGTTTGTT+TGG + chr7_1:63158138-63158157 Msa1029670:CDS 35.0%
!!! TGGTTTTATGGCGTTTGTTT+GGG + chr7_1:63158139-63158158 Msa1029670:CDS 35.0%
!! AGAGTGTTGTGTTTATCTTC+TGG + chr7_1:63158207-63158226 Msa1029670:CDS 35.0%
! GAGTGTTGTGTTTATCTTCT+GGG + chr7_1:63158208-63158227 Msa1029670:CDS 35.0%
ACAATGTGTGTTCCAATACT+CGG + chr7_1:63158269-63158288 Msa1029670:CDS 35.0%
GTGCATATGGAATAAACCAA+CGG - chr7_1:63158526-63158545 None:intergenic 35.0%
TTGCAATCCTGCAATATCTC+AGG + chr7_1:63156664-63156683 Msa1029670:five_prime_UTR 40.0%
ATGTGAACCTGAGATATTGC+AGG - chr7_1:63156674-63156693 None:intergenic 40.0%
CAGGGGGAAATTTGATAAGA+TGG + chr7_1:63157169-63157188 Msa1029670:CDS 40.0%
AAGTACATGCTGCAATTTGG+TGG + chr7_1:63157239-63157258 Msa1029670:CDS 40.0%
GAACCAAGAAATCCTCTTGT+TGG + chr7_1:63157268-63157287 Msa1029670:CDS 40.0%
CATCCAACAAGAGGATTTCT+TGG - chr7_1:63157274-63157293 None:intergenic 40.0%
GCAAATCTGAAAATCTTCGG+CGG + chr7_1:63157312-63157331 Msa1029670:CDS 40.0%
CAAATCTGAAAATCTTCGGC+GGG + chr7_1:63157313-63157332 Msa1029670:CDS 40.0%
! TTTGAAGCCTTCCAATATCC+AGG + chr7_1:63157502-63157521 Msa1029670:CDS 40.0%
CAACTTACCTGGATATTGGA+AGG - chr7_1:63157512-63157531 None:intergenic 40.0%
TGAGCAACTTACCTGGATAT+TGG - chr7_1:63157516-63157535 None:intergenic 40.0%
AGTTAGAAGGAGGATTAGAG+AGG - chr7_1:63157703-63157722 None:intergenic 40.0%
!!! GCTCAGGCTTTTTGGTTTTA+TGG + chr7_1:63158127-63158146 Msa1029670:CDS 40.0%
TAAACACAACACTCTGCACA+CGG - chr7_1:63158202-63158221 None:intergenic 40.0%
AAGACAACCATTCCGAGTAT+TGG - chr7_1:63158284-63158303 None:intergenic 40.0%
ATACTCGGAATGGTTGTCTT+TGG + chr7_1:63158284-63158303 Msa1029670:CDS 40.0%
TACTCGGAATGGTTGTCTTT+GGG + chr7_1:63158285-63158304 Msa1029670:CDS 40.0%
AAAGCAGTACTACCAAGGAA+AGG - chr7_1:63158416-63158435 None:intergenic 40.0%
TTTGTGGTACGATACGAGAA+TGG + chr7_1:63158485-63158504 Msa1029670:three_prime_UTR 40.0%
CATATGGAATAAACCAACGG+TGG - chr7_1:63158523-63158542 None:intergenic 40.0%
TCCATATGCACCATGATTTC+CGG + chr7_1:63158535-63158554 Msa1029670:three_prime_UTR 40.0%
!! TAAAAAGTCAAAGTGCTGGC+CGG - chr7_1:63158557-63158576 None:intergenic 40.0%
TTGCAATCCTGCAATATCTC+AGG + chr7_1:63156664-63156683 Msa1029670:five_prime_UTR 40.0%
ATGTGAACCTGAGATATTGC+AGG - chr7_1:63156674-63156693 None:intergenic 40.0%
CAGGGGGAAATTTGATAAGA+TGG + chr7_1:63157169-63157188 Msa1029670:CDS 40.0%
AAGTACATGCTGCAATTTGG+TGG + chr7_1:63157239-63157258 Msa1029670:CDS 40.0%
GAACCAAGAAATCCTCTTGT+TGG + chr7_1:63157268-63157287 Msa1029670:CDS 40.0%
CATCCAACAAGAGGATTTCT+TGG - chr7_1:63157274-63157293 None:intergenic 40.0%
GCAAATCTGAAAATCTTCGG+CGG + chr7_1:63157312-63157331 Msa1029670:CDS 40.0%
CAAATCTGAAAATCTTCGGC+GGG + chr7_1:63157313-63157332 Msa1029670:CDS 40.0%
! TTTGAAGCCTTCCAATATCC+AGG + chr7_1:63157502-63157521 Msa1029670:CDS 40.0%
CAACTTACCTGGATATTGGA+AGG - chr7_1:63157512-63157531 None:intergenic 40.0%
TGAGCAACTTACCTGGATAT+TGG - chr7_1:63157516-63157535 None:intergenic 40.0%
AGTTAGAAGGAGGATTAGAG+AGG - chr7_1:63157703-63157722 None:intergenic 40.0%
!!! GCTCAGGCTTTTTGGTTTTA+TGG + chr7_1:63158127-63158146 Msa1029670:CDS 40.0%
TAAACACAACACTCTGCACA+CGG - chr7_1:63158202-63158221 None:intergenic 40.0%
AAGACAACCATTCCGAGTAT+TGG - chr7_1:63158284-63158303 None:intergenic 40.0%
ATACTCGGAATGGTTGTCTT+TGG + chr7_1:63158284-63158303 Msa1029670:CDS 40.0%
TACTCGGAATGGTTGTCTTT+GGG + chr7_1:63158285-63158304 Msa1029670:CDS 40.0%
AAAGCAGTACTACCAAGGAA+AGG - chr7_1:63158416-63158435 None:intergenic 40.0%
TTTGTGGTACGATACGAGAA+TGG + chr7_1:63158485-63158504 Msa1029670:three_prime_UTR 40.0%
CATATGGAATAAACCAACGG+TGG - chr7_1:63158523-63158542 None:intergenic 40.0%
TCCATATGCACCATGATTTC+CGG + chr7_1:63158535-63158554 Msa1029670:three_prime_UTR 40.0%
!! TAAAAAGTCAAAGTGCTGGC+CGG - chr7_1:63158557-63158576 None:intergenic 40.0%
ACACAACCATTAGCCAAGGT+TGG + chr7_1:63157876-63157895 Msa1029670:CDS 45.0%
ACGGTTTCCTTGTGCTTAGT+TGG - chr7_1:63157948-63157967 None:intergenic 45.0%
GATCCACGTGTCGAAGAAAA+GGG - chr7_1:63158060-63158079 None:intergenic 45.0%
ACCACGTTGGACCTTCATAA+GGG - chr7_1:63158090-63158109 None:intergenic 45.0%
AGGTCCAACGTGGTCAAATA+TGG + chr7_1:63158096-63158115 Msa1029670:CDS 45.0%
GGTCCAACGTGGTCAAATAT+GGG + chr7_1:63158097-63158116 Msa1029670:CDS 45.0%
AGACCCATATTTGACCACGT+TGG - chr7_1:63158103-63158122 None:intergenic 45.0%
AAAACCAAAAAGCCTGAGCG+AGG - chr7_1:63158126-63158145 None:intergenic 45.0%
GTGTGTTCCAATACTCGGAA+TGG + chr7_1:63158274-63158293 Msa1029670:CDS 45.0%
ACTCGGAATGGTTGTCTTTG+GGG + chr7_1:63158286-63158305 Msa1029670:CDS 45.0%
TACGCAAAGCAGTACTACCA+AGG - chr7_1:63158421-63158440 None:intergenic 45.0%
ACTGCTTTGCGTATTGCTGT+TGG + chr7_1:63158428-63158447 Msa1029670:three_prime_UTR 45.0%
! CTGCTTTGCGTATTGCTGTT+GGG + chr7_1:63158429-63158448 Msa1029670:three_prime_UTR 45.0%
! TTGCTGTTGGGCACTAAACT+TGG + chr7_1:63158441-63158460 Msa1029670:three_prime_UTR 45.0%
!!! TGGCTCGACAACTTTTTCGT+GGG - chr7_1:63158624-63158643 None:intergenic 45.0%
!!! TTGGCTCGACAACTTTTTCG+TGG - chr7_1:63158625-63158644 None:intergenic 45.0%
ACACAACCATTAGCCAAGGT+TGG + chr7_1:63157876-63157895 Msa1029670:CDS 45.0%
ACGGTTTCCTTGTGCTTAGT+TGG - chr7_1:63157948-63157967 None:intergenic 45.0%
GATCCACGTGTCGAAGAAAA+GGG - chr7_1:63158060-63158079 None:intergenic 45.0%
ACCACGTTGGACCTTCATAA+GGG - chr7_1:63158090-63158109 None:intergenic 45.0%
AGGTCCAACGTGGTCAAATA+TGG + chr7_1:63158096-63158115 Msa1029670:CDS 45.0%
GGTCCAACGTGGTCAAATAT+GGG + chr7_1:63158097-63158116 Msa1029670:CDS 45.0%
AGACCCATATTTGACCACGT+TGG - chr7_1:63158103-63158122 None:intergenic 45.0%
AAAACCAAAAAGCCTGAGCG+AGG - chr7_1:63158126-63158145 None:intergenic 45.0%
GTGTGTTCCAATACTCGGAA+TGG + chr7_1:63158274-63158293 Msa1029670:CDS 45.0%
ACTCGGAATGGTTGTCTTTG+GGG + chr7_1:63158286-63158305 Msa1029670:CDS 45.0%
TACGCAAAGCAGTACTACCA+AGG - chr7_1:63158421-63158440 None:intergenic 45.0%
ACTGCTTTGCGTATTGCTGT+TGG + chr7_1:63158428-63158447 Msa1029670:three_prime_UTR 45.0%
! CTGCTTTGCGTATTGCTGTT+GGG + chr7_1:63158429-63158448 Msa1029670:three_prime_UTR 45.0%
! TTGCTGTTGGGCACTAAACT+TGG + chr7_1:63158441-63158460 Msa1029670:three_prime_UTR 45.0%
!!! TGGCTCGACAACTTTTTCGT+GGG - chr7_1:63158624-63158643 None:intergenic 45.0%
!!! TTGGCTCGACAACTTTTTCG+TGG - chr7_1:63158625-63158644 None:intergenic 45.0%
! GTTCCCTTTTCTTCGACACG+TGG + chr7_1:63158054-63158073 Msa1029670:CDS 50.0%
CGATCCACGTGTCGAAGAAA+AGG - chr7_1:63158061-63158080 None:intergenic 50.0%
GATCGAGCCATCCCTTATGA+AGG + chr7_1:63158076-63158095 Msa1029670:CDS 50.0%
CGTTGGACCTTCATAAGGGA+TGG - chr7_1:63158086-63158105 None:intergenic 50.0%
TCCCTTATGAAGGTCCAACG+TGG + chr7_1:63158086-63158105 Msa1029670:CDS 50.0%
GACCACGTTGGACCTTCATA+AGG - chr7_1:63158091-63158110 None:intergenic 50.0%
AAATATGGGTCTCCTCGCTC+AGG + chr7_1:63158111-63158130 Msa1029670:CDS 50.0%
GCCGGAAATCATGGTGCATA+TGG - chr7_1:63158539-63158558 None:intergenic 50.0%
!! AAAGTGCTGGCCGGAAATCA+TGG - chr7_1:63158548-63158567 None:intergenic 50.0%
! GTTCCCTTTTCTTCGACACG+TGG + chr7_1:63158054-63158073 Msa1029670:CDS 50.0%
CGATCCACGTGTCGAAGAAA+AGG - chr7_1:63158061-63158080 None:intergenic 50.0%
GATCGAGCCATCCCTTATGA+AGG + chr7_1:63158076-63158095 Msa1029670:CDS 50.0%
CGTTGGACCTTCATAAGGGA+TGG - chr7_1:63158086-63158105 None:intergenic 50.0%
TCCCTTATGAAGGTCCAACG+TGG + chr7_1:63158086-63158105 Msa1029670:CDS 50.0%
GACCACGTTGGACCTTCATA+AGG - chr7_1:63158091-63158110 None:intergenic 50.0%
AAATATGGGTCTCCTCGCTC+AGG + chr7_1:63158111-63158130 Msa1029670:CDS 50.0%
GCCGGAAATCATGGTGCATA+TGG - chr7_1:63158539-63158558 None:intergenic 50.0%
!! AAAGTGCTGGCCGGAAATCA+TGG - chr7_1:63158548-63158567 None:intergenic 50.0%
! GTCTCCTCGCTCAGGCTTTT+TGG + chr7_1:63158119-63158138 Msa1029670:CDS 55.0%
ACACTCTGCACACGGACGAA+TGG - chr7_1:63158194-63158213 None:intergenic 55.0%
!! GTCTTTGGGGTGTTTGCTCG+TGG + chr7_1:63158299-63158318 Msa1029670:CDS 55.0%
GACGAATGCATCACCACCGT+TGG + chr7_1:63158507-63158526 Msa1029670:three_prime_UTR 55.0%
! GTCTCCTCGCTCAGGCTTTT+TGG + chr7_1:63158119-63158138 Msa1029670:CDS 55.0%
ACACTCTGCACACGGACGAA+TGG - chr7_1:63158194-63158213 None:intergenic 55.0%
!! GTCTTTGGGGTGTTTGCTCG+TGG + chr7_1:63158299-63158318 Msa1029670:CDS 55.0%
GACGAATGCATCACCACCGT+TGG + chr7_1:63158507-63158526 Msa1029670:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 63156632 63158705 63156632 ID=Msa1029670;Name=Msa1029670
chr7_1 mRNA 63156632 63158705 63156632 ID=Msa1029670-mRNA-1;Parent=Msa1029670;Name=Msa1029670-mRNA-1;_AED=0.12;_eAED=0.12;_QI=263|1|1|1|0.5|0.33|3|374|325
chr7_1 exon 63156632 63156862 63156632 ID=Msa1029670-mRNA-1:exon:13649;Parent=Msa1029670-mRNA-1
chr7_1 exon 63157108 63157523 63157108 ID=Msa1029670-mRNA-1:exon:13650;Parent=Msa1029670-mRNA-1
chr7_1 exon 63157738 63158705 63157738 ID=Msa1029670-mRNA-1:exon:13651;Parent=Msa1029670-mRNA-1
chr7_1 five_prime_UTR 63156632 63156862 63156632 ID=Msa1029670-mRNA-1:five_prime_utr;Parent=Msa1029670-mRNA-1
chr7_1 five_prime_UTR 63157108 63157139 63157108 ID=Msa1029670-mRNA-1:five_prime_utr;Parent=Msa1029670-mRNA-1
chr7_1 CDS 63157140 63157523 63157140 ID=Msa1029670-mRNA-1:cds;Parent=Msa1029670-mRNA-1
chr7_1 CDS 63157738 63158331 63157738 ID=Msa1029670-mRNA-1:cds;Parent=Msa1029670-mRNA-1
chr7_1 three_prime_UTR 63158332 63158705 63158332 ID=Msa1029670-mRNA-1:three_prime_utr;Parent=Msa1029670-mRNA-1
Gene Sequence

>Msa1029670

ATGTGTACACATTTCTTTTTCATGGATAACAGGGGGAAATTTGATAAGATGGTTAAAATATTTACGATTTATGAGTTGGAAAAATTAAGTAAAGACTTCAAGTACATGCTGCAATTTGGTGGTTCTGAGAACCAAGAAATCCTCTTGTTGGATGAACTTGAAAATTCAGTGTGCAAATCTGAAAATCTTCGGCGGGAGCAAGTTGCTGTTGATGTTTTGAAGAAACAAATTTTCACGTGGGATGAACTACGACAAAATCAAGAGTTGATCAGAAGGAAATTGATTGATGATGAAATTTTTGATAGAGATGATTATATGTTTAAGATTTCACGCTTAGGAAATCTTAAACCCATTCATTATGGTTTGAAGCCTTCCAATATCCAGAATGTTCTCTTAGATACTTTTATAGAGTATCGAACAAATCATTGTAAGTTCCTTATTTGCGTTGATAAAGAGGAGCAAATAAAGAGCACTACATGGAATTTACACAAAAATGAACCGTGTGTTTTTTACATTGAATTTACACAACCATTAGCCAAGGTTGGAAAAATGACTTCACAATTGCAACACAACTCCACTAGTAGTAATAATCCAACTAAGCACAAGGAAACCGTGCCAATATTATATCCTAAATTTCAGCACAAACGTAAGGAAATTGCACAATATGTTTCATTTGTTGTAATCTTGACCATTACATTTGGTTCCCTTTTCTTCGACACGTGGATCGAGCCATCCCTTATGAAGGTCCAACGTGGTCAAATATGGGTCTCCTCGCTCAGGCTTTTTGGTTTTATGGCGTTTGTTTGGGCCGTTGCTATAATGATTCTTGTTGGTGTACCATTCGTCCGTGTGCAGAGTGTTGTGTTTATCTTCTGGGCTATTTTGATGCATCTTAAATCGCACAACTCAATCACTACAATGTGTGTTCCAATACTCGGAATGGTTGTCTTTGGGGTGTTTGCTCGTGGAAAATTTTAG
Protein sequence

>Msa1029670

MCTHFFFMDNRGKFDKMVKIFTIYELEKLSKDFKYMLQFGGSENQEILLLDELENSVCKSENLRREQVAVDVLKKQIFTWDELRQNQELIRRKLIDDEIFDRDDYMFKISRLGNLKPIHYGLKPSNIQNVLLDTFIEYRTNHCKFLICVDKEEQIKSTTWNLHKNEPCVFYIEFTQPLAKVGKMTSQLQHNSTSSNNPTKHKETVPILYPKFQHKRKEIAQYVSFVVILTITFGSLFFDTWIEPSLMKVQRGQIWVSSLRLFGFMAFVWAVAIMILVGVPFVRVQSVVFIFWAILMHLKSHNSITTMCVPILGMVVFGVFARGKF*