Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1029990 | XP_013449425.1 | 87.500 | 208 | 25 | 1 | 1 | 207 | 1 | 208 | 8.05e-114 | 333 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1029990 | sp|Q40479|ERF2_TOBAC | 51.515 | 132 | 53 | 6 | 35 | 163 | 76 | 199 | 2.86e-25 | 101 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1029990 | I3SRS4 | 87.500 | 208 | 25 | 1 | 1 | 207 | 1 | 208 | 3.84e-114 | 333 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1029990 | TF | AP2/ERF-ERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1029990 | Msa1120770 | 0.807270 | 5.485949e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1029990 | MtrunA17_Chr7g0250721 | 87.500 | 208 | 25 | 1 | 1 | 207 | 1 | 208 | 7.40e-118 | 333 |
| Msa1029990 | MtrunA17_Chr7g0250731 | 76.442 | 208 | 44 | 4 | 1 | 204 | 1 | 207 | 6.11e-98 | 283 |
| Msa1029990 | MtrunA17_Chr7g0250711 | 64.904 | 208 | 69 | 3 | 1 | 207 | 2 | 206 | 3.10e-77 | 230 |
| Msa1029990 | MtrunA17_Chr8g0335311 | 42.408 | 191 | 73 | 6 | 2 | 160 | 6 | 191 | 4.42e-32 | 115 |
| Msa1029990 | MtrunA17_Chr8g0335321 | 53.226 | 124 | 50 | 3 | 56 | 178 | 91 | 207 | 1.21e-30 | 111 |
| Msa1029990 | MtrunA17_Chr8g0335331 | 65.217 | 69 | 21 | 2 | 61 | 127 | 125 | 192 | 4.70e-21 | 86.7 |
| Msa1029990 | MtrunA17_Chr4g0046161 | 49.515 | 103 | 42 | 5 | 23 | 118 | 16 | 115 | 2.10e-19 | 80.1 |
| Msa1029990 | MtrunA17_Chr2g0283171 | 41.000 | 100 | 55 | 2 | 19 | 117 | 24 | 120 | 2.13e-17 | 75.9 |
| Msa1029990 | MtrunA17_Chr1g0184081 | 48.718 | 78 | 39 | 1 | 42 | 118 | 2 | 79 | 3.71e-15 | 69.7 |
| Msa1029990 | MtrunA17_Chr4g0055761 | 55.385 | 65 | 28 | 1 | 59 | 122 | 143 | 207 | 6.64e-15 | 71.2 |
| Msa1029990 | MtrunA17_Chr1g0170531 | 52.239 | 67 | 31 | 1 | 59 | 124 | 87 | 153 | 2.13e-14 | 69.3 |
| Msa1029990 | MtrunA17_Chr7g0261101 | 56.667 | 60 | 25 | 1 | 60 | 118 | 19 | 78 | 3.45e-14 | 67.0 |
| Msa1029990 | MtrunA17_Chr7g0221501 | 56.452 | 62 | 25 | 2 | 60 | 120 | 50 | 110 | 5.66e-14 | 67.0 |
| Msa1029990 | MtrunA17_Chr3g0115631 | 38.406 | 138 | 72 | 5 | 59 | 190 | 148 | 278 | 6.77e-14 | 69.3 |
| Msa1029990 | MtrunA17_Chr8g0382491 | 55.556 | 63 | 24 | 3 | 59 | 119 | 111 | 171 | 7.20e-14 | 68.6 |
| Msa1029990 | MtrunA17_Chr5g0425561 | 43.434 | 99 | 40 | 5 | 24 | 119 | 146 | 231 | 1.68e-13 | 68.2 |
| Msa1029990 | MtrunA17_Chr2g0283181 | 54.688 | 64 | 20 | 2 | 59 | 117 | 147 | 206 | 1.79e-13 | 67.8 |
| Msa1029990 | MtrunA17_Chr1g0196781 | 40.496 | 121 | 57 | 7 | 8 | 119 | 96 | 210 | 2.44e-13 | 67.4 |
| Msa1029990 | MtrunA17_Chr2g0324131 | 54.688 | 64 | 25 | 3 | 59 | 120 | 216 | 277 | 2.86e-13 | 67.8 |
| Msa1029990 | MtrunA17_Chr7g0221471 | 46.429 | 84 | 37 | 3 | 45 | 120 | 27 | 110 | 4.13e-13 | 64.7 |
| Msa1029990 | MtrunA17_Chr4g0055781 | 42.391 | 92 | 49 | 2 | 38 | 128 | 82 | 170 | 4.91e-13 | 65.9 |
| Msa1029990 | MtrunA17_Chr7g0261151 | 55.000 | 60 | 26 | 1 | 60 | 118 | 19 | 78 | 7.00e-13 | 63.5 |
| Msa1029990 | MtrunA17_Chr4g0026931 | 49.351 | 77 | 33 | 2 | 62 | 132 | 132 | 208 | 1.17e-12 | 65.1 |
| Msa1029990 | MtrunA17_Chr4g0055801 | 55.000 | 60 | 26 | 1 | 59 | 117 | 152 | 211 | 6.54e-12 | 63.2 |
| Msa1029990 | MtrunA17_Chr4g0044901 | 45.455 | 77 | 40 | 2 | 61 | 136 | 96 | 171 | 1.46e-11 | 61.6 |
| Msa1029990 | MtrunA17_Chr1g0183981 | 41.837 | 98 | 54 | 2 | 20 | 116 | 36 | 131 | 2.97e-11 | 60.5 |
| Msa1029990 | MtrunA17_Chr4g0026881 | 51.724 | 58 | 27 | 1 | 61 | 117 | 97 | 154 | 3.38e-11 | 60.8 |
| Msa1029990 | MtrunA17_Chr2g0316931 | 38.596 | 114 | 57 | 4 | 29 | 142 | 11 | 111 | 3.76e-11 | 60.1 |
| Msa1029990 | MtrunA17_Chr1g0186671 | 51.667 | 60 | 28 | 1 | 60 | 118 | 18 | 77 | 4.21e-11 | 58.5 |
| Msa1029990 | MtrunA17_Chr4g0044871 | 47.887 | 71 | 35 | 2 | 61 | 130 | 96 | 165 | 4.32e-11 | 60.5 |
| Msa1029990 | MtrunA17_Chr1g0186731 | 50.794 | 63 | 22 | 2 | 60 | 117 | 20 | 78 | 4.70e-11 | 58.5 |
| Msa1029990 | MtrunA17_Chr4g0044881 | 46.914 | 81 | 40 | 3 | 60 | 138 | 113 | 192 | 5.38e-11 | 60.1 |
| Msa1029990 | MtrunA17_Chr1g0184071 | 39.806 | 103 | 50 | 3 | 15 | 116 | 34 | 125 | 5.93e-11 | 58.9 |
| Msa1029990 | MtrunA17_Chr4g0063751 | 54.839 | 62 | 22 | 3 | 59 | 117 | 5 | 63 | 6.27e-11 | 59.7 |
| Msa1029990 | MtrunA17_Chr1g0170471 | 61.905 | 42 | 16 | 0 | 80 | 121 | 103 | 144 | 6.46e-11 | 58.9 |
| Msa1029990 | MtrunA17_Chr7g0265851 | 48.333 | 60 | 27 | 2 | 61 | 118 | 24 | 81 | 6.55e-11 | 59.3 |
| Msa1029990 | MtrunA17_Chr1g0196871 | 52.459 | 61 | 26 | 2 | 59 | 117 | 14 | 73 | 6.79e-11 | 57.0 |
| Msa1029990 | MtrunA17_Chr2g0295421 | 46.575 | 73 | 34 | 3 | 61 | 132 | 96 | 164 | 7.74e-11 | 59.7 |
| Msa1029990 | MtrunA17_Chr4g0003421 | 54.839 | 62 | 22 | 3 | 59 | 117 | 38 | 96 | 9.41e-11 | 59.7 |
| Msa1029990 | MtrunA17_Chr1g0184061 | 52.542 | 59 | 27 | 1 | 59 | 116 | 75 | 133 | 9.94e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1029990 | AT2G44840.1 | 56.000 | 100 | 36 | 4 | 60 | 158 | 91 | 183 | 2.73e-24 | 95.9 |
| Msa1029990 | AT2G33710.1 | 46.465 | 99 | 50 | 3 | 23 | 120 | 33 | 129 | 5.97e-17 | 76.3 |
| Msa1029990 | AT2G33710.2 | 46.465 | 99 | 50 | 3 | 23 | 120 | 33 | 129 | 7.34e-17 | 76.6 |
| Msa1029990 | AT5G47220.1 | 37.569 | 181 | 101 | 6 | 6 | 176 | 53 | 231 | 2.79e-15 | 72.4 |
| Msa1029990 | AT4G17500.1 | 56.923 | 65 | 27 | 1 | 59 | 122 | 146 | 210 | 2.94e-15 | 72.8 |
| Msa1029990 | AT2G22200.1 | 56.716 | 67 | 25 | 3 | 61 | 125 | 71 | 135 | 4.26e-15 | 72.0 |
| Msa1029990 | AT2G20880.1 | 40.351 | 114 | 50 | 4 | 59 | 170 | 185 | 282 | 1.06e-14 | 72.0 |
| Msa1029990 | AT5G13330.1 | 52.857 | 70 | 26 | 2 | 65 | 127 | 36 | 105 | 2.58e-14 | 69.3 |
| Msa1029990 | AT1G22190.1 | 56.716 | 67 | 25 | 3 | 59 | 123 | 81 | 145 | 3.46e-14 | 69.7 |
| Msa1029990 | AT1G78080.1 | 50.000 | 84 | 32 | 4 | 59 | 134 | 150 | 231 | 6.44e-14 | 69.7 |
| Msa1029990 | AT1G36060.1 | 58.730 | 63 | 22 | 3 | 59 | 119 | 141 | 201 | 7.66e-14 | 69.3 |
| Msa1029990 | AT5G51190.1 | 46.250 | 80 | 40 | 2 | 59 | 136 | 70 | 148 | 4.16e-13 | 66.2 |
| Msa1029990 | AT4G28140.1 | 44.318 | 88 | 44 | 4 | 59 | 143 | 141 | 226 | 4.54e-13 | 67.0 |
| Msa1029990 | AT4G39780.1 | 52.941 | 68 | 28 | 3 | 59 | 124 | 91 | 156 | 6.19e-13 | 66.2 |
| Msa1029990 | AT5G47230.1 | 53.125 | 64 | 29 | 1 | 59 | 121 | 154 | 217 | 6.66e-13 | 66.6 |
| Msa1029990 | AT5G65130.1 | 48.718 | 78 | 35 | 4 | 45 | 120 | 96 | 170 | 6.93e-13 | 66.2 |
| Msa1029990 | AT5G65130.2 | 48.718 | 78 | 35 | 4 | 45 | 120 | 98 | 172 | 7.12e-13 | 66.2 |
| Msa1029990 | AT3G23230.1 | 53.333 | 60 | 27 | 1 | 60 | 118 | 19 | 78 | 7.15e-13 | 63.9 |
| Msa1029990 | AT5G43410.1 | 55.000 | 60 | 26 | 1 | 60 | 118 | 14 | 73 | 8.37e-13 | 63.5 |
| Msa1029990 | AT3G23240.1 | 55.932 | 59 | 25 | 1 | 59 | 116 | 80 | 138 | 8.96e-13 | 65.1 |
| Msa1029990 | AT5G61600.1 | 54.098 | 61 | 25 | 2 | 59 | 117 | 86 | 145 | 9.80e-13 | 65.5 |
| Msa1029990 | AT5G61890.1 | 55.556 | 63 | 21 | 2 | 65 | 120 | 87 | 149 | 2.24e-12 | 64.3 |
| Msa1029990 | AT5G07580.1 | 51.667 | 60 | 28 | 1 | 59 | 117 | 108 | 167 | 3.01e-12 | 63.5 |
| Msa1029990 | AT2G47520.1 | 47.143 | 70 | 35 | 2 | 61 | 129 | 50 | 118 | 6.22e-12 | 62.0 |
| Msa1029990 | AT4G13620.1 | 53.968 | 63 | 25 | 3 | 59 | 119 | 230 | 290 | 1.12e-11 | 63.5 |
| Msa1029990 | AT1G72360.1 | 56.667 | 60 | 24 | 2 | 60 | 118 | 24 | 82 | 1.20e-11 | 62.0 |
| Msa1029990 | AT3G16770.1 | 53.333 | 60 | 26 | 2 | 61 | 119 | 79 | 137 | 1.58e-11 | 62.0 |
| Msa1029990 | AT1G72360.3 | 56.667 | 60 | 24 | 2 | 60 | 118 | 73 | 131 | 2.70e-11 | 61.6 |
| Msa1029990 | AT1G72360.2 | 56.667 | 60 | 24 | 2 | 60 | 118 | 75 | 133 | 2.94e-11 | 61.6 |
| Msa1029990 | AT4G17490.1 | 51.667 | 60 | 28 | 1 | 59 | 117 | 135 | 194 | 4.31e-11 | 61.2 |
| Msa1029990 | AT2G36450.1 | 46.032 | 63 | 33 | 1 | 61 | 122 | 15 | 77 | 5.50e-11 | 59.7 |
| Msa1029990 | AT2G31230.1 | 51.667 | 60 | 28 | 1 | 59 | 117 | 84 | 143 | 7.79e-11 | 60.1 |
Find 54 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAGCTTGGCATCTATTCT+TGG | 0.269072 | 7_1:+63769891 | None:intergenic |
| GAAAATTAAGCTTGGCCTTT+CGG | 0.306447 | 7_1:+63770073 | None:intergenic |
| TGAGTGATAGCTCTCTAATT+TGG | 0.317424 | 7_1:-63769807 | Msa1029990:CDS |
| AAAAGAATGGTGCTAGAGTT+TGG | 0.349206 | 7_1:-63770164 | Msa1029990:CDS |
| TACTGAGGAGGAAGCAGCTT+TGG | 0.362869 | 7_1:-63770127 | Msa1029990:CDS |
| GGGCGTGAGGCGTAGGCCAT+GGG | 0.378325 | 7_1:-63770218 | Msa1029990:intron |
| TCTTGGCTAGTTTGTTAAGT+AGG | 0.388767 | 7_1:+63769908 | None:intergenic |
| CCCCTCCTCCTCTTCGACTC+TGG | 0.394361 | 7_1:+63769940 | None:intergenic |
| TTCAAAACCACCTCCCTCTC+TGG | 0.416838 | 7_1:+63770015 | None:intergenic |
| ATATGCAAAATCTGAGTCAT+TGG | 0.423879 | 7_1:+63770390 | None:intergenic |
| TTGATAAGATGTTAGAAAGC+TGG | 0.439763 | 7_1:+63770330 | None:intergenic |
| CACCAGAGTCGAAGAGGAGG+AGG | 0.458780 | 7_1:-63769942 | Msa1029990:CDS |
| CCCTTGTACCGCTTCCATAT+CGG | 0.488268 | 7_1:+63770238 | None:intergenic |
| CAACTTGATGAAGAAGAAGA+AGG | 0.491380 | 7_1:+63769976 | None:intergenic |
| TCCGATATGGAAGCGGTACA+AGG | 0.494611 | 7_1:-63770239 | Msa1029990:CDS |
| CAATTTCAACCACCTTAGCT+TGG | 0.498375 | 7_1:+63769878 | None:intergenic |
| CGCATCAGAGCCAATGAGGT+GGG | 0.527915 | 7_1:+63770050 | None:intergenic |
| AATTGAAACGGCCTCATCAC+AGG | 0.538075 | 7_1:-63769860 | Msa1029990:CDS |
| AATGGTGCTAGAGTTTGGCT+TGG | 0.545008 | 7_1:-63770159 | Msa1029990:CDS |
| TGTACCGCTTCCATATCGGA+GGG | 0.558227 | 7_1:+63770242 | None:intergenic |
| TAAGGTGGTTGAAATTGAAA+CGG | 0.560848 | 7_1:-63769872 | Msa1029990:CDS |
| GAATAGATGCCAAGCTAAGG+TGG | 0.563268 | 7_1:-63769887 | Msa1029990:CDS |
| TTGTACCGCTTCCATATCGG+AGG | 0.566043 | 7_1:+63770241 | None:intergenic |
| ATCAGAGCCAGAGAGGGAGG+TGG | 0.570351 | 7_1:-63770022 | Msa1029990:CDS |
| GATGAAGAAGAAGAAGGCTC+CGG | 0.573483 | 7_1:+63769982 | None:intergenic |
| TTTCAAGATGCGTGGCCGAA+AGG | 0.576598 | 7_1:-63770088 | Msa1029990:CDS |
| AGACACAACTGTAGAGGCGC+GGG | 0.579127 | 7_1:-63770275 | Msa1029990:CDS |
| CAAGAATAGATGCCAAGCTA+AGG | 0.583033 | 7_1:-63769890 | Msa1029990:CDS |
| ACCAGAGTCGAAGAGGAGGA+GGG | 0.588258 | 7_1:-63769941 | Msa1029990:CDS |
| GTCGAAGAGGAGGAGGGGCA+CGG | 0.588884 | 7_1:-63769935 | Msa1029990:CDS |
| CCAGAGTCGAAGAGGAGGAG+GGG | 0.590595 | 7_1:-63769940 | Msa1029990:CDS |
| AAAATCATTTGCCTGTGATG+AGG | 0.591132 | 7_1:+63769849 | None:intergenic |
| TGTCACCAGAGTCGAAGAGG+AGG | 0.591248 | 7_1:-63769945 | Msa1029990:CDS |
| TACATCAGAGCCAGAGAGGG+AGG | 0.593638 | 7_1:-63770025 | Msa1029990:CDS |
| TGCAAAATCTGAGTCATTGG+TGG | 0.595515 | 7_1:+63770393 | None:intergenic |
| CATTGTCACCAGAGTCGAAG+AGG | 0.602910 | 7_1:-63769948 | Msa1029990:CDS |
| GGCGTGAGGCGTAGGCCATG+GGG | 0.604219 | 7_1:-63770217 | Msa1029990:intron |
| GAGGTGGGGAAAATTAAGCT+TGG | 0.607251 | 7_1:+63770065 | None:intergenic |
| TGGAACTTACGTTACTGAGG+AGG | 0.610248 | 7_1:-63770139 | Msa1029990:CDS |
| GTACCGCTTCCATATCGGAG+GGG | 0.617583 | 7_1:+63770243 | None:intergenic |
| AAACCCCTCCGATATGGAAG+CGG | 0.619043 | 7_1:-63770246 | Msa1029990:CDS |
| CCGATATGGAAGCGGTACAA+GGG | 0.622002 | 7_1:-63770238 | Msa1029990:CDS |
| GCATCAGAGCCAATGAGGTG+GGG | 0.625490 | 7_1:+63770051 | None:intergenic |
| GTCTACATCAGAGCCAGAGA+GGG | 0.634870 | 7_1:-63770028 | Msa1029990:CDS |
| AAAATCTGAGTCATTGGTGG+TGG | 0.635436 | 7_1:+63770396 | None:intergenic |
| ACGCATCAGAGCCAATGAGG+TGG | 0.635477 | 7_1:+63770049 | None:intergenic |
| GCTTGGAACTTACGTTACTG+AGG | 0.640291 | 7_1:-63770142 | Msa1029990:CDS |
| TGAGTCAGACACAACTGTAG+AGG | 0.645880 | 7_1:-63770281 | Msa1029990:CDS |
| CGTCTACATCAGAGCCAGAG+AGG | 0.649777 | 7_1:-63770029 | Msa1029990:CDS |
| GGAAGCGGTACAAGGGCGTG+AGG | 0.653891 | 7_1:-63770231 | Msa1029990:CDS |
| GCGTGAGGCGTAGGCCATGG+GGG | 0.654332 | 7_1:-63770216 | Msa1029990:intron |
| AAAGCTGCTTTCAAGATGCG+TGG | 0.655609 | 7_1:-63770096 | Msa1029990:CDS |
| CAGACACAACTGTAGAGGCG+CGG | 0.661942 | 7_1:-63770276 | Msa1029990:CDS |
| TAGACGCATCAGAGCCAATG+AGG | 0.667079 | 7_1:+63770046 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ATATGCAAAATCTGAGTCAT+TGG | + | chr7_1:63769814-63769833 | None:intergenic | 30.0% | |
| ! | TGACTCAGATTTTGCATATT+TGG | - | chr7_1:63769815-63769834 | Msa1029990:CDS | 30.0% |
| TTGATAAGATGTTAGAAAGC+TGG | + | chr7_1:63769874-63769893 | None:intergenic | 30.0% | |
| TCAGAGATCCAAAAAAAGAA+TGG | - | chr7_1:63770024-63770043 | Msa1029990:CDS | 30.0% | |
| TAAGGTGGTTGAAATTGAAA+CGG | - | chr7_1:63770329-63770348 | Msa1029990:CDS | 30.0% | |
| ! | AGGCAAATGATTTTAAGCAA+TGG | - | chr7_1:63770361-63770380 | Msa1029990:CDS | 30.0% |
| ! | GGCAAATGATTTTAAGCAAT+GGG | - | chr7_1:63770362-63770381 | Msa1029990:CDS | 30.0% |
| AGCTGGAATCATCAAAAAGA+AGG | + | chr7_1:63769857-63769876 | None:intergenic | 35.0% | |
| !!! | TCATTGTCACTTTTAGGGAT+TGG | + | chr7_1:63769903-63769922 | None:intergenic | 35.0% |
| !!! | CTGACTCATTGTCACTTTTA+GGG | + | chr7_1:63769908-63769927 | None:intergenic | 35.0% |
| !!! | TCTGACTCATTGTCACTTTT+AGG | + | chr7_1:63769909-63769928 | None:intergenic | 35.0% |
| !!! | CTCTAGCACCATTCTTTTTT+TGG | + | chr7_1:63770035-63770054 | None:intergenic | 35.0% |
| ! | AAAAGAATGGTGCTAGAGTT+TGG | - | chr7_1:63770037-63770056 | Msa1029990:CDS | 35.0% |
| ! | GAAAATTAAGCTTGGCCTTT+CGG | + | chr7_1:63770131-63770150 | None:intergenic | 35.0% |
| CAACTTGATGAAGAAGAAGA+AGG | + | chr7_1:63770228-63770247 | None:intergenic | 35.0% | |
| !! | TCTTGGCTAGTTTGTTAAGT+AGG | + | chr7_1:63770296-63770315 | None:intergenic | 35.0% |
| AAAATCATTTGCCTGTGATG+AGG | + | chr7_1:63770355-63770374 | None:intergenic | 35.0% | |
| TGAGTGATAGCTCTCTAATT+TGG | - | chr7_1:63770394-63770413 | Msa1029990:CDS | 35.0% | |
| AAAATCTGAGTCATTGGTGG+TGG | + | chr7_1:63769808-63769827 | None:intergenic | 40.0% | |
| TGCAAAATCTGAGTCATTGG+TGG | + | chr7_1:63769811-63769830 | None:intergenic | 40.0% | |
| !! | TCACTTTTAGGGATTGGAGA+AGG | + | chr7_1:63769897-63769916 | None:intergenic | 40.0% |
| AAGTAAAAACCCCTCCGATA+TGG | - | chr7_1:63769949-63769968 | Msa1029990:CDS | 40.0% | |
| ! | CTTAATTTTCCCCACCTCAT+TGG | - | chr7_1:63770141-63770160 | Msa1029990:CDS | 40.0% |
| ! | CTTAGCTTGGCATCTATTCT+TGG | + | chr7_1:63770313-63770332 | None:intergenic | 40.0% |
| CAAGAATAGATGCCAAGCTA+AGG | - | chr7_1:63770311-63770330 | Msa1029990:CDS | 40.0% | |
| CAATTTCAACCACCTTAGCT+TGG | + | chr7_1:63770326-63770345 | None:intergenic | 40.0% | |
| TGAGTCAGACACAACTGTAG+AGG | - | chr7_1:63769920-63769939 | Msa1029990:CDS | 45.0% | |
| ! | AATGGTGCTAGAGTTTGGCT+TGG | - | chr7_1:63770042-63770061 | Msa1029990:CDS | 45.0% |
| GCTTGGAACTTACGTTACTG+AGG | - | chr7_1:63770059-63770078 | Msa1029990:CDS | 45.0% | |
| TGGAACTTACGTTACTGAGG+AGG | - | chr7_1:63770062-63770081 | Msa1029990:CDS | 45.0% | |
| ! | AAAGCTGCTTTCAAGATGCG+TGG | - | chr7_1:63770105-63770124 | Msa1029990:CDS | 45.0% |
| GAGGTGGGGAAAATTAAGCT+TGG | + | chr7_1:63770139-63770158 | None:intergenic | 45.0% | |
| !!! | AGAGGGAGGTGGTTTTGAAA+CGG | - | chr7_1:63770190-63770209 | Msa1029990:CDS | 45.0% |
| !!! | GGTTTTGAAACGGGAATCTC+CGG | - | chr7_1:63770200-63770219 | Msa1029990:CDS | 45.0% |
| GATGAAGAAGAAGAAGGCTC+CGG | + | chr7_1:63770222-63770241 | None:intergenic | 45.0% | |
| GAATAGATGCCAAGCTAAGG+TGG | - | chr7_1:63770314-63770333 | Msa1029990:CDS | 45.0% | |
| AATTGAAACGGCCTCATCAC+AGG | - | chr7_1:63770341-63770360 | Msa1029990:CDS | 45.0% | |
| AAACCCCTCCGATATGGAAG+CGG | - | chr7_1:63769955-63769974 | Msa1029990:CDS | 50.0% | |
| TGTACCGCTTCCATATCGGA+GGG | + | chr7_1:63769962-63769981 | None:intergenic | 50.0% | |
| TTGTACCGCTTCCATATCGG+AGG | + | chr7_1:63769963-63769982 | None:intergenic | 50.0% | |
| TCCGATATGGAAGCGGTACA+AGG | - | chr7_1:63769962-63769981 | Msa1029990:CDS | 50.0% | |
| CCCTTGTACCGCTTCCATAT+CGG | + | chr7_1:63769966-63769985 | None:intergenic | 50.0% | |
| CCGATATGGAAGCGGTACAA+GGG | - | chr7_1:63769963-63769982 | Msa1029990:CDS | 50.0% | |
| TACTGAGGAGGAAGCAGCTT+TGG | - | chr7_1:63770074-63770093 | Msa1029990:CDS | 50.0% | |
| TTTCAAGATGCGTGGCCGAA+AGG | - | chr7_1:63770113-63770132 | Msa1029990:CDS | 50.0% | |
| TAGACGCATCAGAGCCAATG+AGG | + | chr7_1:63770158-63770177 | None:intergenic | 50.0% | |
| GTCTACATCAGAGCCAGAGA+GGG | - | chr7_1:63770173-63770192 | Msa1029990:CDS | 50.0% | |
| TTCAAAACCACCTCCCTCTC+TGG | + | chr7_1:63770189-63770208 | None:intergenic | 50.0% | |
| !!! | GAGGGAGGTGGTTTTGAAAC+GGG | - | chr7_1:63770191-63770210 | Msa1029990:CDS | 50.0% |
| CATTGTCACCAGAGTCGAAG+AGG | - | chr7_1:63770253-63770272 | Msa1029990:CDS | 50.0% | |
| CAGACACAACTGTAGAGGCG+CGG | - | chr7_1:63769925-63769944 | Msa1029990:CDS | 55.0% | |
| ! | AGACACAACTGTAGAGGCGC+GGG | - | chr7_1:63769926-63769945 | Msa1029990:CDS | 55.0% |
| GTACCGCTTCCATATCGGAG+GGG | + | chr7_1:63769961-63769980 | None:intergenic | 55.0% | |
| TAGGCCATGGGGGAAGTTTG+CGG | - | chr7_1:63769995-63770014 | Msa1029990:CDS | 55.0% | |
| GCATCAGAGCCAATGAGGTG+GGG | + | chr7_1:63770153-63770172 | None:intergenic | 55.0% | |
| CGCATCAGAGCCAATGAGGT+GGG | + | chr7_1:63770154-63770173 | None:intergenic | 55.0% | |
| ACGCATCAGAGCCAATGAGG+TGG | + | chr7_1:63770155-63770174 | None:intergenic | 55.0% | |
| CGTCTACATCAGAGCCAGAG+AGG | - | chr7_1:63770172-63770191 | Msa1029990:CDS | 55.0% | |
| TACATCAGAGCCAGAGAGGG+AGG | - | chr7_1:63770176-63770195 | Msa1029990:CDS | 55.0% | |
| TGTCACCAGAGTCGAAGAGG+AGG | - | chr7_1:63770256-63770275 | Msa1029990:CDS | 55.0% | |
| ACCAGAGTCGAAGAGGAGGA+GGG | - | chr7_1:63770260-63770279 | Msa1029990:CDS | 55.0% | |
| TCTGCCGCAAACTTCCCCCA+TGG | + | chr7_1:63770002-63770021 | None:intergenic | 60.0% | |
| ATCAGAGCCAGAGAGGGAGG+TGG | - | chr7_1:63770179-63770198 | Msa1029990:CDS | 60.0% | |
| CACCAGAGTCGAAGAGGAGG+AGG | - | chr7_1:63770259-63770278 | Msa1029990:CDS | 60.0% | |
| CCAGAGTCGAAGAGGAGGAG+GGG | - | chr7_1:63770261-63770280 | Msa1029990:CDS | 60.0% | |
| ! | GGAAGCGGTACAAGGGCGTG+AGG | - | chr7_1:63769970-63769989 | Msa1029990:CDS | 65.0% |
| ! | GGTACAAGGGCGTGAGGCGT+AGG | - | chr7_1:63769976-63769995 | Msa1029990:CDS | 65.0% |
| CCCCTCCTCCTCTTCGACTC+TGG | + | chr7_1:63770264-63770283 | None:intergenic | 65.0% | |
| GTCGAAGAGGAGGAGGGGCA+CGG | - | chr7_1:63770266-63770285 | Msa1029990:CDS | 65.0% | |
| AGGGCGTGAGGCGTAGGCCA+TGG | - | chr7_1:63769982-63770001 | Msa1029990:CDS | 70.0% | |
| GGGCGTGAGGCGTAGGCCAT+GGG | - | chr7_1:63769983-63770002 | Msa1029990:CDS | 70.0% | |
| GGCGTGAGGCGTAGGCCATG+GGG | - | chr7_1:63769984-63770003 | Msa1029990:CDS | 70.0% | |
| GCGTGAGGCGTAGGCCATGG+GGG | - | chr7_1:63769985-63770004 | Msa1029990:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 63769798 | 63770425 | 63769798 | ID=Msa1029990;Name=Msa1029990 |
| chr7_1 | mRNA | 63769798 | 63770425 | 63769798 | ID=Msa1029990-mRNA-1;Parent=Msa1029990;Name=Msa1029990-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|0|0|2|0|207 |
| chr7_1 | exon | 63770230 | 63770425 | 63770230 | ID=Msa1029990-mRNA-1:exon:13923;Parent=Msa1029990-mRNA-1 |
| chr7_1 | exon | 63769798 | 63770225 | 63769798 | ID=Msa1029990-mRNA-1:exon:13922;Parent=Msa1029990-mRNA-1 |
| chr7_1 | CDS | 63770230 | 63770425 | 63770230 | ID=Msa1029990-mRNA-1:cds;Parent=Msa1029990-mRNA-1 |
| chr7_1 | CDS | 63769798 | 63770225 | 63769798 | ID=Msa1029990-mRNA-1:cds;Parent=Msa1029990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
