AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1030290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1030290 MtrunA17_Chr7g0251241 86.967 399 17 3 1 391 1 372 0.0 700
Msa1030290 MtrunA17_Chr1g0209141 65.646 294 83 3 74 359 20 303 1.50e-145 416
Msa1030290 MtrunA17_Chr5g0394161 81.746 252 35 2 75 318 2 250 3.15e-140 399
Msa1030290 MtrunA17_Chr1g0209121 64.085 284 93 2 77 351 3 286 2.53e-125 364
Msa1030290 MtrunA17_Chr3g0105961 52.113 284 127 2 86 360 4 287 1.79e-105 312
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1030290 AT3G02600.1 59.487 390 119 6 9 390 5 363 7.80e-161 456
Msa1030290 AT3G02600.2 66.269 335 94 5 64 390 9 332 3.47e-160 453
Msa1030290 AT3G02600.6 68.012 322 84 5 77 390 3 313 2.80e-159 450
Msa1030290 AT3G02600.10 68.012 322 84 5 77 390 3 313 2.80e-159 450
Msa1030290 AT3G02600.7 68.012 322 84 5 77 390 3 313 2.80e-159 450
Msa1030290 AT3G02600.3 68.012 322 84 5 77 390 3 313 2.80e-159 450
Msa1030290 AT3G02600.8 68.012 322 84 5 77 390 3 313 2.80e-159 450
Msa1030290 AT3G02600.4 68.012 322 84 5 77 390 3 313 2.80e-159 450
Msa1030290 AT3G02600.12 68.012 322 84 5 77 390 3 313 2.80e-159 450
Msa1030290 AT3G02600.11 68.012 322 84 5 77 390 3 313 2.80e-159 450
Msa1030290 AT3G02600.9 68.012 322 84 5 77 390 3 313 2.80e-159 450
Msa1030290 AT3G02600.5 68.012 322 84 5 77 390 3 313 2.80e-159 450
Msa1030290 AT2G01180.6 61.279 297 103 4 74 360 15 309 2.89e-136 392
Msa1030290 AT2G01180.4 61.279 297 103 4 74 360 25 319 3.05e-136 392
Msa1030290 AT2G01180.1 61.279 297 103 4 74 360 25 319 3.05e-136 392
Msa1030290 AT2G01180.8 61.279 297 103 4 74 360 25 319 3.05e-136 392
Msa1030290 AT2G01180.7 61.279 297 103 4 74 360 28 322 3.77e-136 392
Msa1030290 AT2G01180.3 61.279 297 103 4 74 360 28 322 3.77e-136 392
Msa1030290 AT2G01180.2 61.565 294 101 4 77 360 3 294 1.87e-135 389
Msa1030290 AT2G01180.5 61.565 294 101 4 77 360 3 294 1.87e-135 389
Msa1030290 AT1G15080.1 61.806 288 101 2 77 355 3 290 5.51e-126 365
Msa1030290 AT3G18220.1 52.685 298 132 2 77 365 3 300 5.16e-104 310

Find 107 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTTGAGCTTCTGTTAAT+TGG 0.145398 7_1:-64293464 None:intergenic
GGGGTCCGTATGCTTATTTC+AGG 0.241216 7_1:+64293373 Msa1030290:CDS
TATCACTGCCGTTACTAAAA+TGG 0.287109 7_1:-64292157 None:intergenic
CACTGGACGGACGTGTTTGC+TGG 0.292931 7_1:+64292761 Msa1030290:CDS
GGGTTAACTTTAACAGGAAA+TGG 0.302168 7_1:+64293522 Msa1030290:CDS
TGCATGGGGTTAACTTTAAC+AGG 0.309244 7_1:+64293516 Msa1030290:CDS
TTGTCTGTAAGAGACAAATT+TGG 0.311613 7_1:+64293685 Msa1030290:three_prime_UTR
GTGTTTGCTGGAGGTCTTAT+AGG 0.312795 7_1:+64292773 Msa1030290:CDS
AAACTTATTTCACTATTTCC+AGG 0.318034 7_1:+64291581 Msa1030290:CDS
CTGGGGATCTCTGCTATGAC+TGG 0.323288 7_1:+64289867 Msa1030290:CDS
TTTCTGAGATCTAGGAATTC+AGG 0.323530 7_1:+64291623 Msa1030290:intron
CTACTTGCTGCATCACTTGT+TGG 0.326071 7_1:+64292710 Msa1030290:CDS
CTACTTGATAGCTGATTTAG+AGG 0.334514 7_1:+64293740 Msa1030290:three_prime_UTR
CTTCAAACTACTTCTAACTA+TGG 0.334666 7_1:+64288379 Msa1030290:exon
TCATAGTGTGTGCGCCAAGC+TGG 0.341574 7_1:-64291657 None:intergenic
TTAGAAGATGATCTTGAATC+TGG 0.345661 7_1:+64293561 Msa1030290:CDS
CAAGCTCCTAATGCTCAAAA+TGG 0.345881 7_1:+64293423 Msa1030290:CDS
ATATATGCAGGGTCATTTGC+TGG 0.361065 7_1:+64292596 Msa1030290:intron
TGATCTTCATCATGCTGTAT+TGG 0.367907 7_1:+64292016 Msa1030290:CDS
AACTTGAGCTTCTGTTAATT+GGG 0.374106 7_1:-64293463 None:intergenic
GATCTTCATCATGCTGTATT+GGG 0.375813 7_1:+64292017 Msa1030290:CDS
GACCTCGACCAGACTTCTTC+TGG 0.383443 7_1:+64292208 Msa1030290:CDS
CATGGTGACTTTGTCCCTCC+TGG 0.390021 7_1:-64293491 None:intergenic
TGGAAATAGTGAAATAAGTT+TGG 0.393505 7_1:-64291579 None:intergenic
AGAGTAATACAGTTCCTGTC+TGG 0.394603 7_1:+64291830 Msa1030290:CDS
TATCCATTCTATCGCTTTGT+TGG 0.395127 7_1:+64291772 Msa1030290:CDS
CTAAAACACATATTCATGAT+TGG 0.400977 7_1:+64291701 Msa1030290:CDS
CTCGGTTGTCACTACTAACT+TGG 0.402097 7_1:+64293650 Msa1030290:three_prime_UTR
TCATCTTCTAATGTTGAAGT+TGG 0.410419 7_1:-64293549 None:intergenic
GATAAATTCTGTATATGTTA+CGG 0.412908 7_1:+64293589 Msa1030290:exon
AAATGGTAATCAAGCACAAT+TGG 0.419067 7_1:+64293440 Msa1030290:CDS
GGATTTATCGAGCCGGAGGC+TGG 0.419606 7_1:+64289848 Msa1030290:intron
GTCTATCAATGGAAAATTAA+CGG 0.419642 7_1:-64289904 None:intergenic
GCAGGGTCATTTGCTGGTCT+AGG 0.424510 7_1:+64292602 Msa1030290:intron
AGTTGTAACTTCCACTTTGA+CGG 0.438905 7_1:-64293798 None:intergenic
ATCCATTCTATCGCTTTGTT+GGG 0.441748 7_1:+64291773 Msa1030290:CDS
CAAAGTCACCATGGGTGCAT+GGG 0.441793 7_1:+64293501 Msa1030290:CDS
ATACATACATCCTTTCCATC+TGG 0.450466 7_1:-64292240 None:intergenic
GGTTAACTTTAACAGGAAAT+GGG 0.459120 7_1:+64293523 Msa1030290:CDS
ACCACAGTTGAGATCAGTCC+TGG 0.459137 7_1:-64291599 None:intergenic
TTCCCAACAAAGCGATAGAA+TGG 0.464974 7_1:-64291775 None:intergenic
CATAGTGTGTGCGCCAAGCT+GGG 0.465906 7_1:-64291656 None:intergenic
ACAAAGTCACCATGGGTGCA+TGG 0.472421 7_1:+64293500 Msa1030290:CDS
GATCATAGATGTCTCTCCTT+CGG 0.475629 7_1:-64291998 None:intergenic
GGCATACCTTCATGATGATA+AGG 0.477176 7_1:-64292953 None:intergenic
CCTCCTCCTTATCATCATGA+AGG 0.477395 7_1:+64292947 Msa1030290:CDS
AAACATCGCCAGAAGAAGTC+TGG 0.485111 7_1:-64292216 None:intergenic
AAGACGAAAGTAGTAAGAAA+AGG 0.488544 7_1:-64288130 None:intergenic
ATTCTATCGCTTTGTTGGGA+AGG 0.490451 7_1:+64291777 Msa1030290:CDS
TAGTGAGCTGACCTGAAAAC+GGG 0.503812 7_1:-64288450 None:intergenic
GTTGTAACTTCCACTTTGAC+GGG 0.504716 7_1:-64293797 None:intergenic
TGGAATGGACACAGACAGTT+CGG 0.509440 7_1:-64288202 None:intergenic
GTAGTGAGCTGACCTGAAAA+CGG 0.509526 7_1:-64288451 None:intergenic
TGGGGATCTCTGCTATGACT+GGG 0.511529 7_1:+64289868 Msa1030290:CDS
GATTTATCGAGCCGGAGGCT+GGG 0.512040 7_1:+64289849 Msa1030290:CDS
AACTACTTCTAACTATGGCT+TGG 0.512182 7_1:+64288384 Msa1030290:exon
AGAAGCTCAAGTTGAGAACC+AGG 0.515071 7_1:+64293473 Msa1030290:CDS
GGGGATCTCTGCTATGACTG+GGG 0.516098 7_1:+64289869 Msa1030290:CDS
GTATGCTTATTTCAGGATGT+TGG 0.516194 7_1:+64293380 Msa1030290:CDS
TACTTCTAACTATGGCTTGG+TGG 0.516557 7_1:+64288387 Msa1030290:exon
TATAGATTGAAAACGAAAGA+AGG 0.520569 7_1:-64288423 None:intergenic
AGGCAGATGGAAGCCCAGCT+TGG 0.522915 7_1:+64291643 Msa1030290:CDS
TAGCAGAGATCCCCAGCCTC+CGG 0.522972 7_1:-64289860 None:intergenic
TTGATGACTACTGGCACCAC+TGG 0.523537 7_1:+64292744 Msa1030290:CDS
TTCTTGTTATTTATATCCGA+AGG 0.524237 7_1:+64291982 Msa1030290:CDS
TGGTGACGAGAGTGTCATAA+AGG 0.524449 7_1:+64292381 Msa1030290:CDS
GATCTAGGAATTCAGGCAGA+TGG 0.533089 7_1:+64291630 Msa1030290:intron
GAGTAATACAGTTCCTGTCT+GGG 0.535025 7_1:+64291831 Msa1030290:CDS
AAATAGTGAAATAAGTTTGG+TGG 0.546411 7_1:-64291576 None:intergenic
TGTTTGAATAAGCTTATGCT+TGG 0.547145 7_1:-64293886 None:intergenic
TCTCTCGAGTTGATGACTAC+TGG 0.560824 7_1:+64292735 Msa1030290:CDS
TAGAAGATGATCTTGAATCT+GGG 0.561142 7_1:+64293562 Msa1030290:CDS
ATATCGAACGCCCGTCAAAG+TGG 0.562031 7_1:+64293787 Msa1030290:three_prime_UTR
TGTGTTTACCTGGAATGGAA+TGG 0.578636 7_1:-64288222 None:intergenic
AAATCACGGTAAAATTGTAT+CGG 0.580450 7_1:+64293834 Msa1030290:three_prime_UTR
CGCCAGAAGAAGTCTGGTCG+AGG 0.581407 7_1:-64292210 None:intergenic
GATGCAATAAAAGATGCAGT+AGG 0.581427 7_1:+64292183 Msa1030290:CDS
AAGTTAACCCCATGCACCCA+TGG 0.581980 7_1:-64293509 None:intergenic
CTTACAGGAACAGCCCAGAC+AGG 0.583384 7_1:-64291844 None:intergenic
TGACTACTGGCACCACTGGA+CGG 0.584322 7_1:+64292748 Msa1030290:CDS
ATAACAAGAAAGATCACGAT+AGG 0.584726 7_1:-64291969 None:intergenic
GGAACTGTATTACTCTTCAG+TGG 0.586540 7_1:-64291823 None:intergenic
GCACACACTATGAGATCTCA+TGG 0.591405 7_1:+64291667 Msa1030290:CDS
CAGCAAACACGTCCGTCCAG+TGG 0.591682 7_1:-64292760 None:intergenic
CTAAAAGCATTTGATCGCAA+AGG 0.593115 7_1:+64292653 Msa1030290:CDS
AACCGAGTAGAAAACATACT+AGG 0.593983 7_1:-64293634 None:intergenic
CCTTCATGATGATAAGGAGG+AGG 0.598516 7_1:-64292947 None:intergenic
GACGAGAGTGTCATAAAGGA+AGG 0.604424 7_1:+64292385 Msa1030290:CDS
TTGGGAGATGTCATTTGTCA+TGG 0.606969 7_1:+64292361 Msa1030290:CDS
ACAAGTGATGCAGCAAGTAG+AGG 0.607599 7_1:-64292707 None:intergenic
ACATGATTTCAATAAATACA+AGG 0.608273 7_1:-64291738 None:intergenic
ATGCAATAAAAGATGCAGTA+GGG 0.614450 7_1:+64292184 Msa1030290:CDS
AACATCCTGAAATAAGCATA+CGG 0.615606 7_1:-64293378 None:intergenic
TCCAGGACTGATCTCAACTG+TGG 0.618892 7_1:+64291598 Msa1030290:CDS
AAAGTCACCATGGGTGCATG+GGG 0.620064 7_1:+64293502 Msa1030290:CDS
TTACCTAGGATTTATCGAGC+CGG 0.624374 7_1:+64289841 Msa1030290:intron
CCTAGGATTTATCGAGCCGG+AGG 0.627973 7_1:+64289844 Msa1030290:intron
TGGACGGACGTGTTTGCTGG+AGG 0.637391 7_1:+64292764 Msa1030290:CDS
TTACCTGGAATGGAATGGAA+TGG 0.643484 7_1:-64288217 None:intergenic
CAGGAGGGACAAAGTCACCA+TGG 0.646229 7_1:+64293492 Msa1030290:CDS
AGGAGGGACAAAGTCACCAT+GGG 0.651663 7_1:+64293493 Msa1030290:CDS
ATACCTTCATGATGATAAGG+AGG 0.657232 7_1:-64292950 None:intergenic
GCTCAAGTTGAGAACCAGGA+GGG 0.662360 7_1:+64293477 Msa1030290:CDS
GCTATCAAGTAGATCAACAG+AGG 0.688830 7_1:-64293729 None:intergenic
TGAGCTGACCTGAAAACGGG+TGG 0.695241 7_1:-64288447 None:intergenic
AGGATGTTGGAAGAAACTAG+AGG 0.720006 7_1:+64293393 Msa1030290:CDS
AGCTCAAGTTGAGAACCAGG+AGG 0.720823 7_1:+64293476 Msa1030290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAATAGTTAAAATAAAA+GGG - chr7_1:64288316-64288335 None:intergenic 10.0%
!! AAAAGAATAGTTAAAATAAA+AGG - chr7_1:64288317-64288336 None:intergenic 10.0%
!! ACTAGATTTATATATATTTA+TGG + chr7_1:64288657-64288676 Msa1030290:intron 10.0%
!! CTAGATTTATATATATTTAT+GGG + chr7_1:64288658-64288677 Msa1030290:intron 10.0%
!! ATATTAGTTAAATATTAGTT+AGG + chr7_1:64291339-64291358 Msa1030290:intron 10.0%
!! TATTAGTTAAATATTAGTTA+GGG + chr7_1:64291340-64291359 Msa1030290:intron 10.0%
!! ATATATGTATTACATAATAA+TGG + chr7_1:64293145-64293164 Msa1030290:intron 10.0%
!! TATATGTATTACATAATAAT+GGG + chr7_1:64293146-64293165 Msa1030290:intron 10.0%
!! TTATATACCAATAATATAGA+GGG - chr7_1:64288275-64288294 None:intergenic 15.0%
!! TTTATATACCAATAATATAG+AGG - chr7_1:64288276-64288295 None:intergenic 15.0%
!!! TATTTTAACTATTCTTTTTC+AGG + chr7_1:64288319-64288338 Msa1030290:intron 15.0%
!!! ATATTAAATTTTTGTTGAAC+CGG - chr7_1:64288789-64288808 None:intergenic 15.0%
!! TCAACAAAAATTTAATATTG+AGG + chr7_1:64288791-64288810 Msa1030290:intron 15.0%
!!! TTTTAAAAGACACTTATTTT+GGG - chr7_1:64291185-64291204 None:intergenic 15.0%
!!! ATTTTAAAAGACACTTATTT+TGG - chr7_1:64291186-64291205 None:intergenic 15.0%
!! ATTAGTTAAATATTAGTTAG+GGG + chr7_1:64291341-64291360 Msa1030290:intron 15.0%
!!! TTTTTAGGTTTATGATAAAT+TGG + chr7_1:64292342-64292361 Msa1030290:intron 15.0%
!!! TTTTAGGTTTATGATAAATT+GGG + chr7_1:64292343-64292362 Msa1030290:intron 15.0%
!!! AAAAGTAGTTTTTCTATTTT+TGG - chr7_1:64292847-64292866 None:intergenic 15.0%
!! ATATGTATTACATAATAATG+GGG + chr7_1:64293147-64293166 Msa1030290:intron 15.0%
!!! TTGTTTTTTTCTTCTTCTTT+GGG - chr7_1:64288090-64288109 None:intergenic 20.0%
!!! TTTGTTTTTTTCTTCTTCTT+TGG - chr7_1:64288091-64288110 None:intergenic 20.0%
!!! TCATTTTCAATCTCTTTTAA+TGG + chr7_1:64288344-64288363 Msa1030290:five_prime_UTR 20.0%
!! TATCTATATCTAGTTGAAAA+AGG + chr7_1:64288896-64288915 Msa1030290:intron 20.0%
!! GTTAATATAAACATGAATCA+TGG - chr7_1:64289011-64289030 None:intergenic 20.0%
!! TCACTATCCTAAAAAAAAAA+AGG - chr7_1:64289425-64289444 None:intergenic 20.0%
!! AATAATATGCAAATAGAAAC+TGG - chr7_1:64289704-64289723 None:intergenic 20.0%
!! AAATAATTCAGTGTAATTAC+AGG + chr7_1:64290083-64290102 Msa1030290:intron 20.0%
!! TCTTATTCATAAACGAATAT+TGG - chr7_1:64290262-64290281 None:intergenic 20.0%
!! TTATATTGAAATGATGAACA+TGG + chr7_1:64290750-64290769 Msa1030290:intron 20.0%
!! ATTGGAGATTGAAATTTAAA+AGG + chr7_1:64290778-64290797 Msa1030290:intron 20.0%
!! AACTAAGGAAATGATATAAA+TGG - chr7_1:64291148-64291167 None:intergenic 20.0%
!! TTAGTTAAATATTAGTTAGG+GGG + chr7_1:64291342-64291361 Msa1030290:intron 20.0%
!! ACATGATTTCAATAAATACA+AGG - chr7_1:64291741-64291760 None:intergenic 20.0%
!!! AAGATTTTATTTTCTGGTAT+AGG + chr7_1:64292123-64292142 Msa1030290:intron 20.0%
!!! ATTGTTAATGACTTCTTTTT+AGG + chr7_1:64292327-64292346 Msa1030290:intron 20.0%
!! AATTCCAATTTATATATGCA+GGG + chr7_1:64292585-64292604 Msa1030290:intron 20.0%
!! GATAATATTGCATAATGTAT+TGG + chr7_1:64292992-64293011 Msa1030290:intron 20.0%
!! AGAAATAAGAACTATAGATA+TGG + chr7_1:64293170-64293189 Msa1030290:intron 20.0%
!! TTCATATTTGACATAATTCA+TGG + chr7_1:64293193-64293212 Msa1030290:intron 20.0%
!! GATAAATTCTGTATATGTTA+CGG + chr7_1:64293589-64293608 Msa1030290:exon 20.0%
!!! ATTTTGAAGCTGATATTTTT+AGG + chr7_1:64293957-64293976 Msa1030290:three_prime_UTR 20.0%
!!! TGTTTTTTTCTTCTTCTTTG+GGG - chr7_1:64288089-64288108 None:intergenic 25.0%
! TATAGATTGAAAACGAAAGA+AGG - chr7_1:64288426-64288445 None:intergenic 25.0%
! CAACTAGATATAGATATTGT+CGG - chr7_1:64288892-64288911 None:intergenic 25.0%
! AACTAAATATTGCCAGAAAA+AGG - chr7_1:64289178-64289197 None:intergenic 25.0%
! TGATTAATGAATTCTTACCT+TGG + chr7_1:64289342-64289361 Msa1030290:intron 25.0%
!!! TGGTTGACCTTTTTTTTTTT+AGG + chr7_1:64289415-64289434 Msa1030290:intron 25.0%
!! CTTCGTATTATCATTTTCTA+TGG + chr7_1:64289445-64289464 Msa1030290:intron 25.0%
! TTAATCTTCAAAGTTAAGCT+AGG - chr7_1:64289509-64289528 None:intergenic 25.0%
!!! TCAATTTTTGATGATTTTCC+TGG + chr7_1:64289544-64289563 Msa1030290:intron 25.0%
! CATATTAAAGTTGAACAAAG+CGG - chr7_1:64289727-64289746 None:intergenic 25.0%
! GTCTATCAATGGAAAATTAA+CGG - chr7_1:64289907-64289926 None:intergenic 25.0%
!!! TCATTTTTTGTGTCTATCAA+TGG - chr7_1:64289918-64289937 None:intergenic 25.0%
! TTTCAAATTATTAGCTGTGT+CGG - chr7_1:64290058-64290077 None:intergenic 25.0%
! AATACTAGAAACAGGTTATA+GGG - chr7_1:64290198-64290217 None:intergenic 25.0%
! AAATACTAGAAACAGGTTAT+AGG - chr7_1:64290199-64290218 None:intergenic 25.0%
! TTTGAGAAAATACTAGAAAC+AGG - chr7_1:64290206-64290225 None:intergenic 25.0%
!!! TTTCTAGTATTTTCTCAAAG+AGG + chr7_1:64290207-64290226 Msa1030290:intron 25.0%
! ATGTTTCATATACTGATAGA+AGG - chr7_1:64290596-64290615 None:intergenic 25.0%
! TCTAGCAAAATCTGAATTAT+TGG - chr7_1:64290687-64290706 None:intergenic 25.0%
! TGCTGAATAGAAATTAACAA+TGG + chr7_1:64290866-64290885 Msa1030290:intron 25.0%
! TTTCTATATATTCAAGAGGT+GGG - chr7_1:64291020-64291039 None:intergenic 25.0%
! ATTTCTATATATTCAAGAGG+TGG - chr7_1:64291021-64291040 None:intergenic 25.0%
! GTCATTTCTATATATTCAAG+AGG - chr7_1:64291024-64291043 None:intergenic 25.0%
! GGAAATGATATAAATGGTTA+TGG - chr7_1:64291142-64291161 None:intergenic 25.0%
! ATTGATAAAAACCAAGCTAA+CGG - chr7_1:64291271-64291290 None:intergenic 25.0%
!! TGTTAAAGTGACACTTATTT+TGG + chr7_1:64291437-64291456 Msa1030290:intron 25.0%
! ATGAACTCTGTAATTAATGT+AGG + chr7_1:64291516-64291535 Msa1030290:intron 25.0%
! AAATAGTGAAATAAGTTTGG+TGG - chr7_1:64291579-64291598 None:intergenic 25.0%
! TGGAAATAGTGAAATAAGTT+TGG - chr7_1:64291582-64291601 None:intergenic 25.0%
! AAACTTATTTCACTATTTCC+AGG + chr7_1:64291581-64291600 Msa1030290:CDS 25.0%
! CTAAAACACATATTCATGAT+TGG + chr7_1:64291701-64291720 Msa1030290:CDS 25.0%
! CAATGTTAGAGTAATTATTC+AGG - chr7_1:64291911-64291930 None:intergenic 25.0%
!! AACATTGTCTTTTACTATCA+TGG + chr7_1:64291924-64291943 Msa1030290:intron 25.0%
!!! TTCTTGTTATTTATATCCGA+AGG + chr7_1:64291982-64292001 Msa1030290:CDS 25.0%
!!! GATGACAAGATTTTATTTTC+TGG + chr7_1:64292117-64292136 Msa1030290:intron 25.0%
! AACTAAAAACCTAAAATTCG+AGG - chr7_1:64292267-64292286 None:intergenic 25.0%
!! TGTTTGTTTGATAGATTTTC+TGG + chr7_1:64292289-64292308 Msa1030290:intron 25.0%
! TAATTAAGTTTCACGAGAAA+TGG + chr7_1:64292492-64292511 Msa1030290:intron 25.0%
! CAATTCCAATTTATATATGC+AGG + chr7_1:64292584-64292603 Msa1030290:intron 25.0%
!! TTTTTATCATTGTACTTAGC+TGG + chr7_1:64292626-64292645 Msa1030290:CDS 25.0%
!!! AAACTACTTTTAGTGTTTGT+TGG + chr7_1:64292856-64292875 Msa1030290:intron 25.0%
!!! GGAAAATGTTTGTTTTTAAG+AGG + chr7_1:64293013-64293032 Msa1030290:intron 25.0%
!!! TGTTTGTTTTTAAGAGGTTT+TGG + chr7_1:64293019-64293038 Msa1030290:intron 25.0%
!!! ATTATACACCTTTTTTCTAG+AGG + chr7_1:64293045-64293064 Msa1030290:intron 25.0%
!!! CAACTTGGTAATTTTTTTAC+AGG - chr7_1:64293268-64293287 None:intergenic 25.0%
! ATATTATCTACAACATCAGA+TGG - chr7_1:64293333-64293352 None:intergenic 25.0%
!! AATATATTGTTATTCTCTGC+AGG + chr7_1:64293348-64293367 Msa1030290:intron 25.0%
! AAATCACGGTAAAATTGTAT+CGG + chr7_1:64293834-64293853 Msa1030290:three_prime_UTR 25.0%
!!! TTTTTAGGTGAATTGGATTT+TGG + chr7_1:64293972-64293991 Msa1030290:three_prime_UTR 25.0%
!!! GTTTTTTTCTTCTTCTTTGG+GGG - chr7_1:64288088-64288107 None:intergenic 30.0%
AAGACGAAAGTAGTAAGAAA+AGG - chr7_1:64288133-64288152 None:intergenic 30.0%
GATTGAATCATACGAAAAAC+AGG + chr7_1:64288160-64288179 Msa1030290:five_prime_UTR 30.0%
ATACCAATAATATAGAGGGA+GGG - chr7_1:64288271-64288290 None:intergenic 30.0%
TATACCAATAATATAGAGGG+AGG - chr7_1:64288272-64288291 None:intergenic 30.0%
CTTCAAACTACTTCTAACTA+TGG + chr7_1:64288379-64288398 Msa1030290:exon 30.0%
! GAAAGTATAGAAATGCATAG+AGG - chr7_1:64288497-64288516 None:intergenic 30.0%
ATTACTAGTAAACAGTACCA+AGG + chr7_1:64288684-64288703 Msa1030290:intron 30.0%
TAAACAGTACCAAGGAAAAT+AGG + chr7_1:64288692-64288711 Msa1030290:intron 30.0%
AAACAGTACCAAGGAAAATA+GGG + chr7_1:64288693-64288712 Msa1030290:intron 30.0%
!! GCTTATCAATCTCTAAAACA+TGG - chr7_1:64289053-64289072 None:intergenic 30.0%
! GGAGAAATTTAAGTTAATGC+AGG + chr7_1:64289269-64289288 Msa1030290:intron 30.0%
TCACAATTCTCACAAAATGA+TGG - chr7_1:64289391-64289410 None:intergenic 30.0%
TTTGTGAGAATTGTGATTCA+TGG + chr7_1:64289395-64289414 Msa1030290:intron 30.0%
! CATTTTCTATGGATATAAGC+AGG + chr7_1:64289456-64289475 Msa1030290:intron 30.0%
CTCATGCTCGTAAATTTAAT+TGG + chr7_1:64289567-64289586 Msa1030290:intron 30.0%
TAAGATAAGCAAAGCAAATC+AGG + chr7_1:64289788-64289807 Msa1030290:intron 30.0%
AAGATAAGCAAAGCAAATCA+GGG + chr7_1:64289789-64289808 Msa1030290:intron 30.0%
GATAGACACAAAAAATGAAG+AGG + chr7_1:64289920-64289939 Msa1030290:CDS 30.0%
TATACAGACATATGAGAACA+CGG - chr7_1:64290285-64290304 None:intergenic 30.0%
TTTAAAGATGAAAGTCCACT+AGG - chr7_1:64290511-64290530 None:intergenic 30.0%
CTCTAATTCACATAGTTTGA+CGG + chr7_1:64290539-64290558 Msa1030290:intron 30.0%
GTATATGAAACATGTCTACA+AGG + chr7_1:64290603-64290622 Msa1030290:intron 30.0%
! TCACCATTTTGTAAAGAGTT+GGG - chr7_1:64290899-64290918 None:intergenic 30.0%
! TTCACCATTTTGTAAAGAGT+TGG - chr7_1:64290900-64290919 None:intergenic 30.0%
!!! AAAAGACACTTATTTTGGGA+CGG - chr7_1:64291181-64291200 None:intergenic 30.0%
TTGATAAAAACCAAGCTAAC+GGG - chr7_1:64291270-64291289 None:intergenic 30.0%
ATCTTAATCAGCAAACTTAC+AGG - chr7_1:64291862-64291881 None:intergenic 30.0%
ATAACAAGAAAGATCACGAT+AGG - chr7_1:64291972-64291991 None:intergenic 30.0%
! ACAAACTCTATTTGCTAAAC+TGG + chr7_1:64292081-64292100 Msa1030290:intron 30.0%
AATCTTGTCATCCACTTTAA+CGG - chr7_1:64292109-64292128 None:intergenic 30.0%
!! ACTGTTCTCCATTTTAGTAA+CGG + chr7_1:64292149-64292168 Msa1030290:CDS 30.0%
ATGCAATAAAAGATGCAGTA+GGG + chr7_1:64292184-64292203 Msa1030290:CDS 30.0%
! GTATGTATTCCTCGAATTTT+AGG + chr7_1:64292255-64292274 Msa1030290:intron 30.0%
!! TTGATAGATTTTCTGGTCAA+AGG + chr7_1:64292296-64292315 Msa1030290:intron 30.0%
AATGCTACATACATGAAGTA+TGG - chr7_1:64292432-64292451 None:intergenic 30.0%
TAGCATTTACTACTTATGAC+TGG + chr7_1:64292445-64292464 Msa1030290:intron 30.0%
ATTACACTAAGTTATGAGCA+TGG - chr7_1:64292476-64292495 None:intergenic 30.0%
ATGACCCTGCATATATAAAT+TGG - chr7_1:64292592-64292611 None:intergenic 30.0%
ACTAATTGAGATGCGATAAA+TGG - chr7_1:64292804-64292823 None:intergenic 30.0%
TATGTGAGATTTCTTCTTTC+AGG + chr7_1:64292887-64292906 Msa1030290:intron 30.0%
TATGTATCTAGGTATGCAAT+TGG - chr7_1:64293097-64293116 None:intergenic 30.0%
ATTGCATACCTAGATACATA+CGG + chr7_1:64293097-64293116 Msa1030290:intron 30.0%
CAGAACTAAATTCATCAACT+TGG - chr7_1:64293283-64293302 None:intergenic 30.0%
!! TTTAGTTCTGTTCTGAACTA+TGG + chr7_1:64293293-64293312 Msa1030290:intron 30.0%
AACATCCTGAAATAAGCATA+CGG - chr7_1:64293381-64293400 None:intergenic 30.0%
! TGATTACCATTTTGAGCATT+AGG - chr7_1:64293432-64293451 None:intergenic 30.0%
AAATGGTAATCAAGCACAAT+TGG + chr7_1:64293440-64293459 Msa1030290:CDS 30.0%
AACTTGAGCTTCTGTTAATT+GGG - chr7_1:64293466-64293485 None:intergenic 30.0%
GGTTAACTTTAACAGGAAAT+GGG + chr7_1:64293523-64293542 Msa1030290:CDS 30.0%
TCATCTTCTAATGTTGAAGT+TGG - chr7_1:64293552-64293571 None:intergenic 30.0%
TTAGAAGATGATCTTGAATC+TGG + chr7_1:64293561-64293580 Msa1030290:CDS 30.0%
TAGAAGATGATCTTGAATCT+GGG + chr7_1:64293562-64293581 Msa1030290:CDS 30.0%
! ATCCTAGTATGTTTTCTACT+CGG + chr7_1:64293632-64293651 Msa1030290:three_prime_UTR 30.0%
TTGTCTGTAAGAGACAAATT+TGG + chr7_1:64293685-64293704 Msa1030290:three_prime_UTR 30.0%
! TTGTAGCTTTTGTCAAATCA+CGG + chr7_1:64293820-64293839 Msa1030290:three_prime_UTR 30.0%
TGTTTGAATAAGCTTATGCT+TGG - chr7_1:64293889-64293908 None:intergenic 30.0%
!!! GCTGATATTTTTAGGTGAAT+TGG + chr7_1:64293965-64293984 Msa1030290:three_prime_UTR 30.0%
AACTACTTCTAACTATGGCT+TGG + chr7_1:64288384-64288403 Msa1030290:exon 35.0%
TAGAAATGCATAGAGGTGAA+GGG - chr7_1:64288490-64288509 None:intergenic 35.0%
ATAGAAATGCATAGAGGTGA+AGG - chr7_1:64288491-64288510 None:intergenic 35.0%
! TTTTATATGCTCCAAGCAAG+TGG + chr7_1:64288574-64288593 Msa1030290:intron 35.0%
AAAACTCAATATCCGACACT+AGG - chr7_1:64288631-64288650 None:intergenic 35.0%
TTAATGCGAACAACTCTGTA+AGG - chr7_1:64288735-64288754 None:intergenic 35.0%
AATATGGTTGGGATAGTAGT+CGG - chr7_1:64288762-64288781 None:intergenic 35.0%
TATCCCAACCATATTAACTC+CGG + chr7_1:64288767-64288786 Msa1030290:intron 35.0%
TTGTTGAACCGGAGTTAATA+TGG - chr7_1:64288778-64288797 None:intergenic 35.0%
! TATAGATATTGTCGGCTACA+TGG - chr7_1:64288884-64288903 None:intergenic 35.0%
AAGGCTTGAATGATTGATTG+TGG + chr7_1:64288915-64288934 Msa1030290:intron 35.0%
!! CTCTAAAACATGGTTCAACA+CGG - chr7_1:64289043-64289062 None:intergenic 35.0%
TCAGAAGAGTTATAAGTCCA+AGG - chr7_1:64289362-64289381 None:intergenic 35.0%
CTAGGCAATCAATCAGATTA+AGG - chr7_1:64289491-64289510 None:intergenic 35.0%
TGCTCTTTACATATTTGCGA+TGG + chr7_1:64289599-64289618 Msa1030290:intron 35.0%
!! CTTGTTTTCAACGACACAAA+GGG - chr7_1:64289753-64289772 None:intergenic 35.0%
!!! TCTTGTTTTCAACGACACAA+AGG - chr7_1:64289754-64289773 None:intergenic 35.0%
!!! CACGAAAGTGCTTTTTTTTG+AGG + chr7_1:64289818-64289837 Msa1030290:intron 35.0%
!!! GCTTTTTTTTGAGGTTACCT+AGG + chr7_1:64289827-64289846 Msa1030290:intron 35.0%
TGAGTATAACCTATGAAGCA+CGG + chr7_1:64289991-64290010 Msa1030290:intron 35.0%
TTCAGTGTAATTACAGGTGT+CGG + chr7_1:64290089-64290108 Msa1030290:intron 35.0%
GGGTTATACTCTATGAAGAA+CGG - chr7_1:64290178-64290197 None:intergenic 35.0%
! TTTTCTCAAAGAGGTAGTTG+TGG + chr7_1:64290216-64290235 Msa1030290:intron 35.0%
AAGCAGTATAGAGAAGAGAT+TGG - chr7_1:64290322-64290341 None:intergenic 35.0%
TTCTCTATACTGCTTTCTGT+TGG + chr7_1:64290327-64290346 Msa1030290:intron 35.0%
TTGATCCTTGCTAGAAAGAT+AGG + chr7_1:64290389-64290408 Msa1030290:intron 35.0%
! TAAGTCCTATCTTTCTAGCA+AGG - chr7_1:64290397-64290416 None:intergenic 35.0%
ATGATGAACATGGTGCTTAT+TGG + chr7_1:64290760-64290779 Msa1030290:intron 35.0%
ATCTGAGTTAAAACAGCTAG+AGG + chr7_1:64290824-64290843 Msa1030290:intron 35.0%
CATCCCAACTCTTTACAAAA+TGG + chr7_1:64290893-64290912 Msa1030290:intron 35.0%
CAATGATAAACCTCCTAGAA+AGG + chr7_1:64290925-64290944 Msa1030290:intron 35.0%
! AAGTCTGAAAAAAAGGTGCA+GGG - chr7_1:64290953-64290972 None:intergenic 35.0%
! AAAGTCTGAAAAAAAGGTGC+AGG - chr7_1:64290954-64290973 None:intergenic 35.0%
GTTGGGAAAGTCTGAAAAAA+AGG - chr7_1:64290960-64290979 None:intergenic 35.0%
! AGAGAATGGCATTTTATGAG+TGG - chr7_1:64291060-64291079 None:intergenic 35.0%
! ATTCTGATTTTGCGACAGAT+TGG - chr7_1:64291118-64291137 None:intergenic 35.0%
TGATAAAAACCAAGCTAACG+GGG - chr7_1:64291269-64291288 None:intergenic 35.0%
!!! GTGACACTTATTTTGGAAGT+TGG + chr7_1:64291444-64291463 Msa1030290:intron 35.0%
!! TTTCTGAGATCTAGGAATTC+AGG + chr7_1:64291623-64291642 Msa1030290:intron 35.0%
TATCCATTCTATCGCTTTGT+TGG + chr7_1:64291772-64291791 Msa1030290:CDS 35.0%
! ATCCATTCTATCGCTTTGTT+GGG + chr7_1:64291773-64291792 Msa1030290:CDS 35.0%
TGATCTTCATCATGCTGTAT+TGG + chr7_1:64292016-64292035 Msa1030290:CDS 35.0%
GATCTTCATCATGCTGTATT+GGG + chr7_1:64292017-64292036 Msa1030290:CDS 35.0%
TATCACTGCCGTTACTAAAA+TGG - chr7_1:64292160-64292179 None:intergenic 35.0%
GATGCAATAAAAGATGCAGT+AGG + chr7_1:64292183-64292202 Msa1030290:CDS 35.0%
ATACATACATCCTTTCCATC+TGG - chr7_1:64292243-64292262 None:intergenic 35.0%
TAAGTTTCACGAGAAATGGA+TGG + chr7_1:64292496-64292515 Msa1030290:intron 35.0%
!! CTAAAAGCATTTGATCGCAA+AGG + chr7_1:64292653-64292672 Msa1030290:CDS 35.0%
ATACCTTCATGATGATAAGG+AGG - chr7_1:64292953-64292972 None:intergenic 35.0%
TTATCTAAGAGAATCTGCAG+AGG - chr7_1:64292977-64292996 None:intergenic 35.0%
TTGCATACCTAGATACATAC+GGG + chr7_1:64293098-64293117 Msa1030290:intron 35.0%
! TATTGTTATTCTCTGCAGGT+TGG + chr7_1:64293352-64293371 Msa1030290:intron 35.0%
! ATTGTTATTCTCTGCAGGTT+GGG + chr7_1:64293353-64293372 Msa1030290:intron 35.0%
GTATGCTTATTTCAGGATGT+TGG + chr7_1:64293380-64293399 Msa1030290:CDS 35.0%
CAACTTGAGCTTCTGTTAAT+TGG - chr7_1:64293467-64293486 None:intergenic 35.0%
GGGTTAACTTTAACAGGAAA+TGG + chr7_1:64293522-64293541 Msa1030290:CDS 35.0%
AACCGAGTAGAAAACATACT+AGG - chr7_1:64293637-64293656 None:intergenic 35.0%
! CTACTTGATAGCTGATTTAG+AGG + chr7_1:64293740-64293759 Msa1030290:three_prime_UTR 35.0%
AGTTGTAACTTCCACTTTGA+CGG - chr7_1:64293801-64293820 None:intergenic 35.0%
TTACCTGGAATGGAATGGAA+TGG - chr7_1:64288220-64288239 None:intergenic 40.0%
TGTGTTTACCTGGAATGGAA+TGG - chr7_1:64288225-64288244 None:intergenic 40.0%
CAATAATATAGAGGGAGGGA+GGG - chr7_1:64288267-64288286 None:intergenic 40.0%
! TACTTCTAACTATGGCTTGG+TGG + chr7_1:64288387-64288406 Msa1030290:exon 40.0%
! ATCTATAACCACCCGTTTTC+AGG + chr7_1:64288439-64288458 Msa1030290:CDS 40.0%
! GCTCTATATGGACTAATCCA+CGG - chr7_1:64288544-64288563 None:intergenic 40.0%
AAGCAGAGCAAAGCTCTATA+TGG - chr7_1:64288556-64288575 None:intergenic 40.0%
! TTCTGCTACCCTATTTTCCT+TGG - chr7_1:64288704-64288723 None:intergenic 40.0%
GAACCGGAGTTAATATGGTT+GGG - chr7_1:64288773-64288792 None:intergenic 40.0%
TGAACCGGAGTTAATATGGT+TGG - chr7_1:64288774-64288793 None:intergenic 40.0%
! GCACAAAGTTGTCCTTTTTC+TGG + chr7_1:64289163-64289182 Msa1030290:intron 40.0%
ACCATAGCAGAACGAACTAA+AGG - chr7_1:64289242-64289261 None:intergenic 40.0%
TAAATTTACGAGCATGAGCC+AGG - chr7_1:64289565-64289584 None:intergenic 40.0%
GCATACATGGACAAATATGC+TGG + chr7_1:64289634-64289653 Msa1030290:intron 40.0%
TTACCTAGGATTTATCGAGC+CGG + chr7_1:64289841-64289860 Msa1030290:intron 40.0%
TAACCTATGAAGCACGGATA+CGG + chr7_1:64289997-64290016 Msa1030290:intron 40.0%
AGCAAGGATCAATTACAAGC+TGG - chr7_1:64290381-64290400 None:intergenic 40.0%
GTTCCACAGAAAAGGCAATA+CGG - chr7_1:64290477-64290496 None:intergenic 40.0%
ATGAAAGTCCACTAGGAAAC+TGG - chr7_1:64290504-64290523 None:intergenic 40.0%
GAGGATATCTTCTCTGCTAA+TGG + chr7_1:64290843-64290862 Msa1030290:intron 40.0%
TCAGACTTTCCCAACCAAAA+AGG + chr7_1:64290965-64290984 Msa1030290:intron 40.0%
! GCATTTTATGAGTGGAGAGA+AGG - chr7_1:64291052-64291071 None:intergenic 40.0%
! GATAGGGGCATAAAAGAGAA+TGG - chr7_1:64291074-64291093 None:intergenic 40.0%
GATAAAAACCAAGCTAACGG+GGG - chr7_1:64291268-64291287 None:intergenic 40.0%
!!! CTGTGGTTTTTCTGAGATCT+AGG + chr7_1:64291615-64291634 Msa1030290:intron 40.0%
TTCCCAACAAAGCGATAGAA+TGG - chr7_1:64291778-64291797 None:intergenic 40.0%
! ATTCTATCGCTTTGTTGGGA+AGG + chr7_1:64291777-64291796 Msa1030290:CDS 40.0%
GGAACTGTATTACTCTTCAG+TGG - chr7_1:64291826-64291845 None:intergenic 40.0%
AGAGTAATACAGTTCCTGTC+TGG + chr7_1:64291830-64291849 Msa1030290:CDS 40.0%
GAGTAATACAGTTCCTGTCT+GGG + chr7_1:64291831-64291850 Msa1030290:CDS 40.0%
GATCATAGATGTCTCTCCTT+CGG - chr7_1:64292001-64292020 None:intergenic 40.0%
CTAAACTGGAACCGTTAAAG+TGG + chr7_1:64292095-64292114 Msa1030290:intron 40.0%
! TTGGGAGATGTCATTTGTCA+TGG + chr7_1:64292361-64292380 Msa1030290:CDS 40.0%
ATATATGCAGGGTCATTTGC+TGG + chr7_1:64292596-64292615 Msa1030290:intron 40.0%
GGCATACCTTCATGATGATA+AGG - chr7_1:64292956-64292975 None:intergenic 40.0%
AATGTCTCCCGTATGTATCT+AGG - chr7_1:64293108-64293127 None:intergenic 40.0%
! TTGTTATTCTCTGCAGGTTG+GGG + chr7_1:64293354-64293373 Msa1030290:intron 40.0%
AGGATGTTGGAAGAAACTAG+AGG + chr7_1:64293393-64293412 Msa1030290:CDS 40.0%
CAAGCTCCTAATGCTCAAAA+TGG + chr7_1:64293423-64293442 Msa1030290:CDS 40.0%
TGCATGGGGTTAACTTTAAC+AGG + chr7_1:64293516-64293535 Msa1030290:CDS 40.0%
GCTATCAAGTAGATCAACAG+AGG - chr7_1:64293732-64293751 None:intergenic 40.0%
!! GAGGCTGTTTGTTTTCATGA+TGG + chr7_1:64293759-64293778 Msa1030290:three_prime_UTR 40.0%
GTTGTAACTTCCACTTTGAC+GGG - chr7_1:64293800-64293819 None:intergenic 40.0%
TGGAATGGACACAGACAGTT+CGG - chr7_1:64288205-64288224 None:intergenic 45.0%
TGTCCATTCCATTCCATTCC+AGG + chr7_1:64288214-64288233 Msa1030290:intron 45.0%
GCTGTTGTGTTTACCTGGAA+TGG - chr7_1:64288230-64288249 None:intergenic 45.0%
CATAGGCTGTTGTGTTTACC+TGG - chr7_1:64288235-64288254 None:intergenic 45.0%
CCAATAATATAGAGGGAGGG+AGG - chr7_1:64288268-64288287 None:intergenic 45.0%
CCTCCCTCCCTCTATATTAT+TGG + chr7_1:64288265-64288284 Msa1030290:intron 45.0%
TAGTGAGCTGACCTGAAAAC+GGG - chr7_1:64288453-64288472 None:intergenic 45.0%
GTAGTGAGCTGACCTGAAAA+CGG - chr7_1:64288454-64288473 None:intergenic 45.0%
CTTCTCGATGTCAATTTCCG+TGG + chr7_1:64288524-64288543 Msa1030290:intron 45.0%
ATATGCTCCAAGCAAGTGGA+CGG + chr7_1:64288578-64288597 Msa1030290:intron 45.0%
! GATTGGTCCTCAGGATTAGT+TGG + chr7_1:64288604-64288623 Msa1030290:intron 45.0%
ACTAGGACCAACTAATCCTG+AGG - chr7_1:64288614-64288633 None:intergenic 45.0%
!! GGATTAGTTGGTCCTAGTGT+CGG + chr7_1:64288616-64288635 Msa1030290:intron 45.0%
GAGACTGACTACGAACGTTA+TGG + chr7_1:64288847-64288866 Msa1030290:intron 45.0%
GTAGCTACAGAAGAATGAGC+TGG + chr7_1:64289079-64289098 Msa1030290:intron 45.0%
! GCCTTTAGTTCGTTCTGCTA+TGG + chr7_1:64289238-64289257 Msa1030290:intron 45.0%
TAGTTCGTTCTGCTATGGTC+TGG + chr7_1:64289243-64289262 Msa1030290:intron 45.0%
GACACATGCTCTTGCATACA+TGG + chr7_1:64289621-64289640 Msa1030290:intron 45.0%
! TGTCGGTATCGTGTTGATGT+CGG + chr7_1:64290106-64290125 Msa1030290:intron 45.0%
GAACGGACAATCCTCGTATT+AGG - chr7_1:64290161-64290180 None:intergenic 45.0%
CAAAGAGGTAGTTGTGGAAG+AGG + chr7_1:64290222-64290241 Msa1030290:intron 45.0%
GCAATACGGTGGAGTTAGAT+GGG - chr7_1:64290463-64290482 None:intergenic 45.0%
! CTGGTCTAGTTCCACAGAAA+AGG - chr7_1:64290485-64290504 None:intergenic 45.0%
GAACTAGACCAGTTTCCTAG+TGG + chr7_1:64290493-64290512 Msa1030290:intron 45.0%
!!! ATTGCGAGGCCTTTTTGGTT+GGG - chr7_1:64290977-64290996 None:intergenic 45.0%
!! AATTGCGAGGCCTTTTTGGT+TGG - chr7_1:64290978-64290997 None:intergenic 45.0%
! CAAGAATTGCGAGGCCTTTT+TGG - chr7_1:64290982-64291001 None:intergenic 45.0%
AGAGGAATGCAAGAATTGCG+AGG - chr7_1:64290991-64291010 None:intergenic 45.0%
TCAAGAGGTGGGATTGATAG+AGG - chr7_1:64291009-64291028 None:intergenic 45.0%
TTTGCGACAGATTGGAGTCT+GGG - chr7_1:64291110-64291129 None:intergenic 45.0%
! TTTTGCGACAGATTGGAGTC+TGG - chr7_1:64291111-64291130 None:intergenic 45.0%
GACGGAGGGAGTAATAACTA+AGG - chr7_1:64291163-64291182 None:intergenic 45.0%
!!! GACACTTATTTTGGGACGGA+GGG - chr7_1:64291177-64291196 None:intergenic 45.0%
!!! AGACACTTATTTTGGGACGG+AGG - chr7_1:64291178-64291197 None:intergenic 45.0%
GATCTAGGAATTCAGGCAGA+TGG + chr7_1:64291630-64291649 Msa1030290:intron 45.0%
GCACACACTATGAGATCTCA+TGG + chr7_1:64291667-64291686 Msa1030290:CDS 45.0%
AAACATCGCCAGAAGAAGTC+TGG - chr7_1:64292219-64292238 None:intergenic 45.0%
! TTCTGGCGATGTTTTCCAGA+TGG + chr7_1:64292225-64292244 Msa1030290:CDS 45.0%
! GCGATGTTTTCCAGATGGAA+AGG + chr7_1:64292230-64292249 Msa1030290:CDS 45.0%
!! TGGTGACGAGAGTGTCATAA+AGG + chr7_1:64292381-64292400 Msa1030290:CDS 45.0%
!! GACGAGAGTGTCATAAAGGA+AGG + chr7_1:64292385-64292404 Msa1030290:CDS 45.0%
GGACATAAGAGTTTCCCAAG+CGG + chr7_1:64292406-64292425 Msa1030290:intron 45.0%
TACATGAAGTATGGCCGCTT+GGG - chr7_1:64292423-64292442 None:intergenic 45.0%
ATACATGAAGTATGGCCGCT+TGG - chr7_1:64292424-64292443 None:intergenic 45.0%
ACAAGTGATGCAGCAAGTAG+AGG - chr7_1:64292710-64292729 None:intergenic 45.0%
! CTACTTGCTGCATCACTTGT+TGG + chr7_1:64292710-64292729 Msa1030290:CDS 45.0%
!! TCTCTCGAGTTGATGACTAC+TGG + chr7_1:64292735-64292754 Msa1030290:CDS 45.0%
! GTGTTTGCTGGAGGTCTTAT+AGG + chr7_1:64292773-64292792 Msa1030290:CDS 45.0%
CCTTCATGATGATAAGGAGG+AGG - chr7_1:64292950-64292969 None:intergenic 45.0%
CCTCCTCCTTATCATCATGA+AGG + chr7_1:64292947-64292966 Msa1030290:CDS 45.0%
!! AGAAGCTCAAGTTGAGAACC+AGG + chr7_1:64293473-64293492 Msa1030290:CDS 45.0%
CTCGGTTGTCACTACTAACT+TGG + chr7_1:64293650-64293669 Msa1030290:three_prime_UTR 45.0%
TAATATAGAGGGAGGGAGGG+AGG - chr7_1:64288264-64288283 None:intergenic 50.0%
CGTTCTGCTATGGTCTGGAT+AGG + chr7_1:64289248-64289267 Msa1030290:intron 50.0%
TGGGGATCTCTGCTATGACT+GGG + chr7_1:64289868-64289887 Msa1030290:CDS 50.0%
TGTCCGTATCCGTGCTTCAT+AGG - chr7_1:64290003-64290022 None:intergenic 50.0%
TATTAGGCATGTCCCGGTGT+CGG - chr7_1:64290145-64290164 None:intergenic 50.0%
TCCTCGTATTAGGCATGTCC+CGG - chr7_1:64290151-64290170 None:intergenic 50.0%
GGCAATACGGTGGAGTTAGA+TGG - chr7_1:64290464-64290483 None:intergenic 50.0%
CCACAGAAAAGGCAATACGG+TGG - chr7_1:64290474-64290493 None:intergenic 50.0%
! CCACCGTATTGCCTTTTCTG+TGG + chr7_1:64290471-64290490 Msa1030290:intron 50.0%
AAGGTGCAGGGTTCCTTTCT+AGG - chr7_1:64290941-64290960 None:intergenic 50.0%
GGATGGAGGCAAACTGATAG+GGG - chr7_1:64291089-64291108 None:intergenic 50.0%
GGGATGGAGGCAAACTGATA+GGG - chr7_1:64291090-64291109 None:intergenic 50.0%
TGGGATGGAGGCAAACTGAT+AGG - chr7_1:64291091-64291110 None:intergenic 50.0%
CAAAAATGCCCCCGTTAGCT+TGG + chr7_1:64291257-64291276 Msa1030290:intron 50.0%
TCCAGGACTGATCTCAACTG+TGG + chr7_1:64291598-64291617 Msa1030290:CDS 50.0%
ACCACAGTTGAGATCAGTCC+TGG - chr7_1:64291602-64291621 None:intergenic 50.0%
! TTGATGACTACTGGCACCAC+TGG + chr7_1:64292744-64292763 Msa1030290:CDS 50.0%
GGGGTCCGTATGCTTATTTC+AGG + chr7_1:64293373-64293392 Msa1030290:CDS 50.0%
!! AGCTCAAGTTGAGAACCAGG+AGG + chr7_1:64293476-64293495 Msa1030290:CDS 50.0%
!! GCTCAAGTTGAGAACCAGGA+GGG + chr7_1:64293477-64293496 Msa1030290:CDS 50.0%
AGGAGGGACAAAGTCACCAT+GGG + chr7_1:64293493-64293512 Msa1030290:CDS 50.0%
ACAAAGTCACCATGGGTGCA+TGG + chr7_1:64293500-64293519 Msa1030290:CDS 50.0%
CAAAGTCACCATGGGTGCAT+GGG + chr7_1:64293501-64293520 Msa1030290:CDS 50.0%
AAAGTCACCATGGGTGCATG+GGG + chr7_1:64293502-64293521 Msa1030290:CDS 50.0%
AAGTTAACCCCATGCACCCA+TGG - chr7_1:64293512-64293531 None:intergenic 50.0%
ATATCGAACGCCCGTCAAAG+TGG + chr7_1:64293787-64293806 Msa1030290:three_prime_UTR 50.0%
TGAGCTGACCTGAAAACGGG+TGG - chr7_1:64288450-64288469 None:intergenic 55.0%
AATCCCACCGTCCACTTGCT+TGG - chr7_1:64288588-64288607 None:intergenic 55.0%
AAGCAAGTGGACGGTGGGAT+TGG + chr7_1:64288587-64288606 Msa1030290:intron 55.0%
! CCTCCGGCTCGATAAATCCT+AGG - chr7_1:64289847-64289866 None:intergenic 55.0%
CCTAGGATTTATCGAGCCGG+AGG + chr7_1:64289844-64289863 Msa1030290:intron 55.0%
GATTTATCGAGCCGGAGGCT+GGG + chr7_1:64289849-64289868 Msa1030290:CDS 55.0%
ATTTATCGAGCCGGAGGCTG+GGG + chr7_1:64289850-64289869 Msa1030290:CDS 55.0%
CTGGGGATCTCTGCTATGAC+TGG + chr7_1:64289867-64289886 Msa1030290:CDS 55.0%
GGGGATCTCTGCTATGACTG+GGG + chr7_1:64289869-64289888 Msa1030290:CDS 55.0%
ACGGATACGGACACAGACAC+CGG + chr7_1:64290010-64290029 Msa1030290:intron 55.0%
ACCGGGACATGCCTAATACG+AGG + chr7_1:64290147-64290166 Msa1030290:intron 55.0%
GTGCAGGGTTCCTTTCTAGG+AGG - chr7_1:64290938-64290957 None:intergenic 55.0%
! CAGATTGGAGTCTGGGATGG+AGG - chr7_1:64291103-64291122 None:intergenic 55.0%
CGACAGATTGGAGTCTGGGA+TGG - chr7_1:64291106-64291125 None:intergenic 55.0%
CATAGTGTGTGCGCCAAGCT+GGG - chr7_1:64291659-64291678 None:intergenic 55.0%
TCATAGTGTGTGCGCCAAGC+TGG - chr7_1:64291660-64291679 None:intergenic 55.0%
CTTACAGGAACAGCCCAGAC+AGG - chr7_1:64291847-64291866 None:intergenic 55.0%
GACCTCGACCAGACTTCTTC+TGG + chr7_1:64292208-64292227 Msa1030290:CDS 55.0%
! GCAGGGTCATTTGCTGGTCT+AGG + chr7_1:64292602-64292621 Msa1030290:intron 55.0%
TGACTACTGGCACCACTGGA+CGG + chr7_1:64292748-64292767 Msa1030290:CDS 55.0%
CATGGTGACTTTGTCCCTCC+TGG - chr7_1:64293494-64293513 None:intergenic 55.0%
CAGGAGGGACAAAGTCACCA+TGG + chr7_1:64293492-64293511 Msa1030290:CDS 55.0%
AGGGAGGGAGGCAGTGTCAT+AGG - chr7_1:64288252-64288271 None:intergenic 60.0%
TGCTCCAAGCAAGTGGACGG+TGG + chr7_1:64288581-64288600 Msa1030290:intron 60.0%
GCTCCAAGCAAGTGGACGGT+GGG + chr7_1:64288582-64288601 Msa1030290:intron 60.0%
GGATTTATCGAGCCGGAGGC+TGG + chr7_1:64289848-64289867 Msa1030290:intron 60.0%
TAGCAGAGATCCCCAGCCTC+CGG - chr7_1:64289863-64289882 None:intergenic 60.0%
CACAGACACCGGACACGACA+CGG + chr7_1:64290021-64290040 Msa1030290:intron 60.0%
GTCAGTGTCCGTGTCGTGTC+CGG - chr7_1:64290032-64290051 None:intergenic 60.0%
ACACGACACGTGTCCGACAC+CGG + chr7_1:64290129-64290148 Msa1030290:intron 60.0%
AGGCAGATGGAAGCCCAGCT+TGG + chr7_1:64291643-64291662 Msa1030290:CDS 60.0%
CGCCAGAAGAAGTCTGGTCG+AGG - chr7_1:64292213-64292232 None:intergenic 60.0%
CAGCAAACACGTCCGTCCAG+TGG - chr7_1:64292763-64292782 None:intergenic 60.0%
CACTGGACGGACGTGTTTGC+TGG + chr7_1:64292761-64292780 Msa1030290:CDS 60.0%
! TGGACGGACGTGTTTGCTGG+AGG + chr7_1:64292764-64292783 Msa1030290:CDS 60.0%
!! GGACGGTGGGATTGGTCCTC+AGG + chr7_1:64288595-64288614 Msa1030290:intron 65.0%
CACGACACGTGTCCGACACC+GGG + chr7_1:64290130-64290149 Msa1030290:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 64288070 64294033 64288070 ID=Msa1030290;Name=Msa1030290
chr7_1 mRNA 64288070 64294033 64288070 ID=Msa1030290-mRNA-1;Parent=Msa1030290;Name=Msa1030290-mRNA-1;_AED=0.26;_eAED=0.26;_QI=218|0.7|0.81|1|0.5|0.45|11|440|391
chr7_1 exon 64288070 64288230 64288070 ID=Msa1030290-mRNA-1:exon:14082;Parent=Msa1030290-mRNA-1
chr7_1 exon 64288341 64288460 64288341 ID=Msa1030290-mRNA-1:exon:14083;Parent=Msa1030290-mRNA-1
chr7_1 exon 64289849 64289941 64289849 ID=Msa1030290-mRNA-1:exon:14084;Parent=Msa1030290-mRNA-1
chr7_1 exon 64291563 64291619 64291563 ID=Msa1030290-mRNA-1:exon:14085;Parent=Msa1030290-mRNA-1
chr7_1 exon 64291637 64291861 64291637 ID=Msa1030290-mRNA-1:exon:14086;Parent=Msa1030290-mRNA-1
chr7_1 exon 64291951 64292038 64291951 ID=Msa1030290-mRNA-1:exon:14087;Parent=Msa1030290-mRNA-1
chr7_1 exon 64292145 64292254 64292145 ID=Msa1030290-mRNA-1:exon:14088;Parent=Msa1030290-mRNA-1
chr7_1 exon 64292349 64292415 64292349 ID=Msa1030290-mRNA-1:exon:14089;Parent=Msa1030290-mRNA-1
chr7_1 exon 64292606 64292794 64292606 ID=Msa1030290-mRNA-1:exon:14090;Parent=Msa1030290-mRNA-1
chr7_1 exon 64292909 64292968 64292909 ID=Msa1030290-mRNA-1:exon:14091;Parent=Msa1030290-mRNA-1
chr7_1 exon 64293370 64294033 64293370 ID=Msa1030290-mRNA-1:exon:14092;Parent=Msa1030290-mRNA-1
chr7_1 five_prime_UTR 64288070 64288230 64288070 ID=Msa1030290-mRNA-1:five_prime_utr;Parent=Msa1030290-mRNA-1
chr7_1 five_prime_UTR 64288341 64288397 64288341 ID=Msa1030290-mRNA-1:five_prime_utr;Parent=Msa1030290-mRNA-1
chr7_1 CDS 64288398 64288460 64288398 ID=Msa1030290-mRNA-1:cds;Parent=Msa1030290-mRNA-1
chr7_1 CDS 64289849 64289941 64289849 ID=Msa1030290-mRNA-1:cds;Parent=Msa1030290-mRNA-1
chr7_1 CDS 64291563 64291619 64291563 ID=Msa1030290-mRNA-1:cds;Parent=Msa1030290-mRNA-1
chr7_1 CDS 64291637 64291861 64291637 ID=Msa1030290-mRNA-1:cds;Parent=Msa1030290-mRNA-1
chr7_1 CDS 64291951 64292038 64291951 ID=Msa1030290-mRNA-1:cds;Parent=Msa1030290-mRNA-1
chr7_1 CDS 64292145 64292254 64292145 ID=Msa1030290-mRNA-1:cds;Parent=Msa1030290-mRNA-1
chr7_1 CDS 64292349 64292415 64292349 ID=Msa1030290-mRNA-1:cds;Parent=Msa1030290-mRNA-1
chr7_1 CDS 64292606 64292794 64292606 ID=Msa1030290-mRNA-1:cds;Parent=Msa1030290-mRNA-1
chr7_1 CDS 64292909 64292968 64292909 ID=Msa1030290-mRNA-1:cds;Parent=Msa1030290-mRNA-1
chr7_1 CDS 64293370 64293593 64293370 ID=Msa1030290-mRNA-1:cds;Parent=Msa1030290-mRNA-1
chr7_1 three_prime_UTR 64293594 64294033 64293594 ID=Msa1030290-mRNA-1:three_prime_utr;Parent=Msa1030290-mRNA-1
Gene Sequence

>Msa1030290

ATGGCTTGGTGGAATTTTATAACATCCTTCTTTCGTTTTCAATCTATAACCACCCGTTTTCAGGATTTATCGAGCCGGAGGCTGGGGATCTCTGCTATGACTGGGGATCAATTTTCATCCGTTAATTTTCCATTGATAGACACAAAAAATGAAGAGAGAGAAAGACTCTCCACCAAACTTATTTCACTATTTCCAGGACTGATCTCAACTGTGGAATTCAGGCAGATGGAAGCCCAGCTTGGCGCACACACTATGAGATCTCATGGATATGCAGTTGCTAAAACACATATTCATGATTGGATCATTCTATTGCTCCTTGTATTTATTGAAATCATGTTATACTTGATCTATCCATTCTATCGCTTTGTTGGGAAGGATATGATGTCTGATCTCAAATATCCACTGAAGAGTAATACAGTTCCTGTCTGGGCTGTTCCTATGCTTGCAGTTGTATTGCCTATCGTGATCTTTCTTGTTATTTATATCCGAAGGAGAGACATCTATGATCTTCATCATGCTGTATTGGGTCTACTGTTCTCCATTTTAGTAACGGCAGTGATAACTGATGCAATAAAAGATGCAGTAGGGCGACCTCGACCAGACTTCTTCTGGCGATGTTTTCCAGATGGAAAGGATGTTTATGATAAATTGGGAGATGTCATTTGTCATGGTGACGAGAGTGTCATAAAGGAAGGACATAAGAGGTCATTTGCTGGTCTAGGTTTTTTATCATTGTACTTAGCTGGAAAACTAAAAGCATTTGATCGCAAAGGTCACGTTGCAAAACTTTGCGTTATTTTTCTACCTCTACTTGCTGCATCACTTGTTGGCATCTCTCGAGTTGATGACTACTGGCACCACTGGACGGACGTGTTTGCTGGAGGTCTTATAGGTCTTGTAGTAGCTACTTTTTGCTATTTGCAGTTTTTTCCTCCTCCTTATCATCATGAAGGTTGGGGTCCGTATGCTTATTTCAGGATGTTGGAAGAAACTAGAGGTATGACACAAGCTCCTAATGCTCAAAATGGTAATCAAGCACAATTGGCCCAATTAACAGAAGCTCAAGTTGAGAACCAGGAGGGACAAAGTCACCATGGGTGCATGGGGTTAACTTTAACAGGAAATGGGAATCCAACTTCAACATTAGAAGATGATCTTGAATCTGGGAGAAGATAA

Protein sequence

>Msa1030290

MAWWNFITSFFRFQSITTRFQDLSSRRLGISAMTGDQFSSVNFPLIDTKNEERERLSTKLISLFPGLISTVEFRQMEAQLGAHTMRSHGYAVAKTHIHDWIILLLLVFIEIMLYLIYPFYRFVGKDMMSDLKYPLKSNTVPVWAVPMLAVVLPIVIFLVIYIRRRDIYDLHHAVLGLLFSILVTAVITDAIKDAVGRPRPDFFWRCFPDGKDVYDKLGDVICHGDESVIKEGHKRSFAGLGFLSLYLAGKLKAFDRKGHVAKLCVIFLPLLAASLVGISRVDDYWHHWTDVFAGGLIGLVVATFCYLQFFPPPYHHEGWGPYAYFRMLEETRGMTQAPNAQNGNQAQLAQLTEAQVENQEGQSHHGCMGLTLTGNGNPTSTLEDDLESGRR*