AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1039070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1039070 MtrunA17_Chr7g0272991 99.615 260 1 0 1 260 1 260 0.0 537
Msa1039070 MtrunA17_Chr1g0191681 83.539 243 36 1 1 243 1 239 3.62e-140 394
Msa1039070 MtrunA17_Chr2g0310741 55.785 242 92 7 12 247 15 247 9.87e-76 231
Msa1039070 MtrunA17_Chr3g0132191 66.038 159 39 4 83 238 37 183 1.24e-62 196
Msa1039070 MtrunA17_Chr2g0288481 49.468 188 70 8 82 259 66 238 6.82e-53 172
Msa1039070 MtrunA17_Chr2g0318881 59.770 87 34 1 100 185 21 107 1.64e-31 112
Msa1039070 MtrunA17_Chr2g0318921 61.446 83 31 1 100 181 21 103 6.70e-31 111
Msa1039070 MtrunA17_Chr8g0376351 61.333 75 28 1 119 192 1 75 2.16e-27 101
Msa1039070 MtrunA17_Chr3g0081161 39.744 78 47 0 102 179 9 86 7.89e-12 63.9
Msa1039070 MtrunA17_Chr8g0354151 37.179 78 49 0 102 179 9 86 1.47e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1039070 AT1G08970.3 62.500 248 63 8 1 247 1 219 4.92e-88 261
Msa1039070 AT1G08970.4 62.500 248 63 8 1 247 1 219 4.92e-88 261
Msa1039070 AT1G08970.2 62.500 248 63 8 1 247 1 219 4.92e-88 261
Msa1039070 AT1G08970.1 62.500 248 63 8 1 247 1 219 4.92e-88 261
Msa1039070 AT1G54830.2 63.636 242 56 5 16 256 5 215 2.92e-87 259
Msa1039070 AT1G54830.3 63.636 242 56 5 16 256 5 215 2.92e-87 259
Msa1039070 AT1G54830.1 63.636 242 56 5 16 256 5 215 2.92e-87 259
Msa1039070 AT3G48590.1 68.790 157 44 3 83 238 47 199 1.76e-70 216
Msa1039070 AT5G63470.2 68.987 158 45 4 83 238 60 215 2.07e-67 209
Msa1039070 AT5G63470.1 68.987 158 45 4 83 238 60 215 2.07e-67 209
Msa1039070 AT1G56170.1 75.758 132 25 3 80 209 55 181 1.35e-66 205
Msa1039070 AT1G56170.2 75.758 132 25 3 80 209 55 181 1.35e-66 205
Msa1039070 AT5G50480.1 49.123 171 63 5 79 248 35 182 2.74e-46 154
Msa1039070 AT5G27910.1 45.349 172 72 8 77 248 15 164 4.68e-39 134
Msa1039070 AT5G50490.1 38.889 180 96 4 70 249 8 173 1.71e-34 123
Msa1039070 AT5G50470.1 39.560 182 71 8 79 251 44 195 9.78e-31 114
Msa1039070 AT5G38140.1 43.269 104 55 2 76 178 44 144 1.41e-25 100
Msa1039070 AT3G12480.1 37.179 78 49 0 102 179 9 86 1.30e-11 63.9

Find 119 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCTGGGTAAAATGTAATT+TGG 0.125571 7_1:+76180100 Msa1039070:three_prime_UTR
AAGCCAGCACTTCATCTTTC+AGG 0.158704 7_1:-76179441 None:intergenic
GTCATTTGGTTTGGCTGATA+TGG 0.158964 7_1:-76178977 None:intergenic
GACTGATATCTTTGATTTCC+TGG 0.246183 7_1:+76179396 Msa1039070:CDS
TAATTTGGGTTTAAACCTTA+TGG 0.256597 7_1:+76180115 Msa1039070:three_prime_UTR
TCAACCTGCTGGAGCTCAGC+TGG 0.263146 7_1:+76179051 Msa1039070:CDS
TGCAGACTTCTATTGCCTAT+TGG 0.279278 7_1:+76180166 Msa1039070:three_prime_UTR
GCAGACTTCTATTGCCTATT+GGG 0.280699 7_1:+76180167 Msa1039070:three_prime_UTR
ATCTTTATGTTTAATTAAGC+TGG 0.286907 7_1:+76180084 Msa1039070:three_prime_UTR
CTATTGGGTTATATTTACTA+TGG 0.312585 7_1:+76180182 Msa1039070:three_prime_UTR
GGGGCCCCAGTCATTTGGTT+TGG 0.316348 7_1:-76178986 None:intergenic
AGCTGGGTAAAATGTAATTT+GGG 0.319298 7_1:+76180101 Msa1039070:three_prime_UTR
TTTCCTGGCTTGCAGATTGC+AGG 0.326598 7_1:+76179947 Msa1039070:intron
GGAGATGGTGGTCGCTGTTC+CGG 0.343092 7_1:-76179649 None:intergenic
TAAAGGAATCATAGATTTGC+AGG 0.344712 7_1:-76180241 None:intergenic
GGCTGCTGAGCATACATGTT+TGG 0.345011 7_1:-76179589 None:intergenic
GCCTCCCAAGTTGGAACTGC+TGG 0.356093 7_1:+76179538 Msa1039070:CDS
ACATAAAGATAAGTTATTAC+TGG 0.361320 7_1:-76180071 None:intergenic
GATCCGTTGTTACATCAGTT+GGG 0.366704 7_1:+76179011 Msa1039070:CDS
ATCCTGGGGCCCCAGTCATT+TGG 0.379289 7_1:-76178991 None:intergenic
TCATTTGGTTTGGCTGATAT+GGG 0.380613 7_1:-76178976 None:intergenic
GGTTTAAACCTTATGGTCTT+CGG 0.383720 7_1:+76180122 Msa1039070:three_prime_UTR
ACTGATGTAACAACGGATCC+TGG 0.389880 7_1:-76179007 None:intergenic
TGGAACTGCTGGTGTCATAA+TGG 0.411463 7_1:+76179549 Msa1039070:CDS
CACAACCAGAATCCGCAAAT+GGG 0.411828 7_1:+76178914 Msa1039070:CDS
AGAGGAACAATGCCTGTTGC+TGG 0.417994 7_1:+76179472 Msa1039070:CDS
GGATCCGTTGTTACATCAGT+TGG 0.426256 7_1:+76179010 Msa1039070:CDS
CATAGTAAATATAACCCAAT+AGG 0.426321 7_1:-76180181 None:intergenic
GCTGCTGAGCATACATGTTT+GGG 0.435445 7_1:-76179588 None:intergenic
CATCTCAGCATCTAGTGATC+TGG 0.437549 7_1:-76179670 None:intergenic
AGCAACAGCTGCAATCCTTC+TGG 0.445281 7_1:+76179128 Msa1039070:CDS
AGATTGCAGGGAACTGCAAT+GGG 0.446408 7_1:+76179960 Msa1039070:intron
CAGTGTGGTTCCATGAGCGC+AGG 0.449372 7_1:-76179318 None:intergenic
ACAAATGTGGCCACAGCCTC+CGG 0.450073 7_1:+76179630 Msa1039070:CDS
GCACAACCAGAATCCGCAAA+TGG 0.451270 7_1:+76178913 Msa1039070:CDS
CAAGAACCACAGCCTTCCTC+TGG 0.452736 7_1:+76179189 Msa1039070:CDS
GCATCAGCAGGACCAGCAAC+AGG 0.455014 7_1:-76179484 None:intergenic
GTTGCTGCTGTTGCTGCTGA+TGG 0.455992 7_1:-76179102 None:intergenic
GGCCTGTGAGATGTTCATAT+TGG 0.456864 7_1:+76179288 Msa1039070:CDS
CCATGAGAGTTGACTGCTAA+AGG 0.458260 7_1:-76180258 None:intergenic
TGGAGTTAACCCTGCGCTCA+TGG 0.458619 7_1:+76179308 Msa1039070:CDS
CAGTCCACTGGTCAACCTGC+TGG 0.464075 7_1:+76179040 Msa1039070:CDS
CACATTTGTGGTGCCATGTA+GGG 0.465255 7_1:-76179616 None:intergenic
CTGATGTAACAACGGATCCT+GGG 0.469388 7_1:-76179006 None:intergenic
CTGGTACTGGTTTGACCAGA+AGG 0.471679 7_1:-76179143 None:intergenic
CAACCTGCTGGAGCTCAGCT+GGG 0.476224 7_1:+76179052 Msa1039070:CDS
ATGCTGAGATGTGGATGTTA+AGG 0.476601 7_1:+76179682 Msa1039070:three_prime_UTR
TGACACCAGCAGTTCCAACT+TGG 0.478083 7_1:-76179543 None:intergenic
GGAACTGCTGGTGTCATAAT+GGG 0.479046 7_1:+76179550 Msa1039070:CDS
TCTTTATGTTTAATTAAGCT+GGG 0.482086 7_1:+76180085 Msa1039070:three_prime_UTR
TTGTGGTGCCATGTAGGGAT+GGG 0.484954 7_1:-76179611 None:intergenic
AACCAAATGACTGGGGCCCC+AGG 0.486456 7_1:+76178989 Msa1039070:CDS
TTTGTGGTGCCATGTAGGGA+TGG 0.486986 7_1:-76179612 None:intergenic
GGAGGCTGTGGCCACATTTG+TGG 0.486993 7_1:-76179628 None:intergenic
GCAACAGGCATTGTTCCTCT+TGG 0.487666 7_1:-76179469 None:intergenic
TGGGTGTGAAACTGTTCCAT+TGG 0.491473 7_1:+76179985 Msa1039070:three_prime_UTR
ACCACACTGAAGAGAACAAA+AGG 0.492883 7_1:+76179332 Msa1039070:CDS
CCACATTTGTGGTGCCATGT+AGG 0.497501 7_1:-76179617 None:intergenic
TACATGTTTGGGTCCATCAC+AGG 0.504424 7_1:-76179577 None:intergenic
TATATCATCCGAAGACCATA+AGG 0.504471 7_1:-76180130 None:intergenic
TATCAGCCAAACCAAATGAC+TGG 0.504884 7_1:+76178980 Msa1039070:CDS
CCTCAGCATGCCTCCCAAGT+TGG 0.514710 7_1:+76179529 Msa1039070:CDS
TCTTGATCCTTGCCAGAGGA+AGG 0.515769 7_1:-76179201 None:intergenic
GTTGCTGCTGATGGATATGC+TGG 0.517658 7_1:-76179093 None:intergenic
TGACCCAGCTGAGCTCCAGC+AGG 0.517937 7_1:-76179055 None:intergenic
CCAGTACCAGGAAATTGAAA+AGG 0.518655 7_1:+76179156 Msa1039070:CDS
CTTCTGGTCAAACCAGTACC+AGG 0.521956 7_1:+76179144 Msa1039070:CDS
TTCCTGGCTTGCAGATTGCA+GGG 0.525676 7_1:+76179948 Msa1039070:intron
CCTTTAGCAGTCAACTCTCA+TGG 0.529370 7_1:+76180258 Msa1039070:three_prime_UTR
CAGATTGCAGGGAACTGCAA+TGG 0.530413 7_1:+76179959 Msa1039070:intron
ATCCGTTGTTACATCAGTTG+GGG 0.531831 7_1:+76179012 Msa1039070:CDS
GGTCGCTGTTCCGGAGGCTG+TGG 0.539229 7_1:-76179640 None:intergenic
GGACCTGAAAGATGAAGTGC+TGG 0.542953 7_1:+76179438 Msa1039070:CDS
TGTGGTGCCATGTAGGGATG+GGG 0.546062 7_1:-76179610 None:intergenic
ACTTGGGAGGCATGCTGAGG+TGG 0.548128 7_1:-76179526 None:intergenic
ATCAGCCAAACCAAATGACT+GGG 0.550264 7_1:+76178981 Msa1039070:CDS
GACACCAGCAGTTCCAACTT+GGG 0.552393 7_1:-76179542 None:intergenic
AAGCACCTGTCATATTTGCA+AGG 0.553287 7_1:+76179266 Msa1039070:CDS
CAGTAAGGAAGAGCATCAGC+AGG 0.560205 7_1:-76179496 None:intergenic
CAGGCCCTTGCAAATATGAC+AGG 0.560856 7_1:-76179271 None:intergenic
TCAGCAGCCCCATCCCTACA+TGG 0.562305 7_1:+76179603 Msa1039070:CDS
ATCAGAAACTGTAGCTGAGA+TGG 0.564284 7_1:+76180012 Msa1039070:three_prime_UTR
TCCTTGCCAGAGGAAGGCTG+TGG 0.564697 7_1:-76179195 None:intergenic
GGAATCATAGATTTGCAGGC+AGG 0.566600 7_1:-76180237 None:intergenic
CAAAACAGAATGGATCATCA+AGG 0.570283 7_1:+76178890 Msa1039070:intron
AGCATCTAGTGATCTGGAGA+TGG 0.574668 7_1:-76179664 None:intergenic
ATATTGCTGCTGCAATCACT+AGG 0.575052 7_1:+76179374 Msa1039070:CDS
GAAGATCATGAAGGCTGATG+AGG 0.575398 7_1:+76179222 Msa1039070:CDS
TGAGGTGGCATGTAGCAGTA+AGG 0.584291 7_1:-76179511 None:intergenic
ACCACAGCCTTCCTCTGGCA+AGG 0.585880 7_1:+76179194 Msa1039070:CDS
ACAGTTTCTGATCGCACCAA+TGG 0.588674 7_1:-76180001 None:intergenic
AGCTCCAGCAGGTTGACCAG+TGG 0.593284 7_1:-76179044 None:intergenic
CATAATGGGAAAGCCTGTGA+TGG 0.593370 7_1:+76179564 Msa1039070:CDS
CACGAGGCACAATGTCAACC+AGG 0.593690 7_1:-76179414 None:intergenic
ACAACCAGAATCCGCAAATG+GGG 0.594889 7_1:+76178915 Msa1039070:CDS
ATTGCAGGGAACTGCAATGG+GGG 0.605277 7_1:+76179962 Msa1039070:three_prime_UTR
ATCTAGTGATCTGGAGATGG+TGG 0.605869 7_1:-76179661 None:intergenic
CTCCAATATGAACATCTCAC+AGG 0.609517 7_1:-76179290 None:intergenic
TGATATGGGTTAGATCCGTA+CGG 0.617785 7_1:-76178962 None:intergenic
AGCGGCAGTCAAATGCCGTA+CGG 0.619913 7_1:+76178947 Msa1039070:CDS
TGATGTAACAACGGATCCTG+GGG 0.620797 7_1:-76179005 None:intergenic
AGCACCTGTCATATTTGCAA+GGG 0.622434 7_1:+76179267 Msa1039070:CDS
ATCTTCTTGATCCTTGCCAG+AGG 0.624577 7_1:-76179205 None:intergenic
AAAACAGAATGGATCATCAA+GGG 0.625548 7_1:+76178891 Msa1039070:intron
ACCAGCAGTTCCAACTTGGG+AGG 0.637100 7_1:-76179539 None:intergenic
AGTGTGGTTCCATGAGCGCA+GGG 0.637592 7_1:-76179317 None:intergenic
GATCACTAGATGCTGAGATG+TGG 0.638929 7_1:+76179673 Msa1039070:exon
CCTACATGGCACCACAAATG+TGG 0.644640 7_1:+76179617 Msa1039070:CDS
GATGGTGGTCGCTGTTCCGG+AGG 0.649506 7_1:-76179646 None:intergenic
CCAACTTGGGAGGCATGCTG+AGG 0.657795 7_1:-76179529 None:intergenic
TCATCTTTCAGGTCCTCACG+AGG 0.665344 7_1:-76179430 None:intergenic
AAGGATCAAGAAGATCATGA+AGG 0.667741 7_1:+76179213 Msa1039070:CDS
TCCGTTGTTACATCAGTTGG+GGG 0.670764 7_1:+76179013 Msa1039070:CDS
GGTTGACATTGTGCCTCGTG+AGG 0.672349 7_1:+76179417 Msa1039070:CDS
CAACCAGAATCCGCAAATGG+GGG 0.676007 7_1:+76178916 Msa1039070:CDS
ACACTGAAGAGAACAAAAGG+AGG 0.682027 7_1:+76179335 Msa1039070:CDS
GATTGCAGGGAACTGCAATG+GGG 0.700328 7_1:+76179961 Msa1039070:intron
GTGCTGGCTTCAATTCCAAG+AGG 0.714242 7_1:+76179454 Msa1039070:CDS
TCAGCCAAACCAAATGACTG+GGG 0.740826 7_1:+76178982 Msa1039070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAACATCAAAAA+AGG - chr7_1:76178263-76178282 None:intergenic 10.0%
!!! TGATTATTGTTTTTCTTTTT+TGG + chr7_1:76178131-76178150 Msa1039070:intron 15.0%
!!! TGTAAATTGAAAACTTATTT+TGG + chr7_1:76178454-76178473 Msa1039070:intron 15.0%
!!! TTTCATTTTCAAAGAAAAGA+AGG + chr7_1:76177689-76177708 Msa1039070:intron 20.0%
!!! TTCATTTTCAAAGAAAAGAA+GGG + chr7_1:76177690-76177709 Msa1039070:intron 20.0%
!! AAGAAGAGAAAAAAAGTTTA+GGG - chr7_1:76177780-76177799 None:intergenic 20.0%
!! AAAGAAGAGAAAAAAAGTTT+AGG - chr7_1:76177781-76177800 None:intergenic 20.0%
!!! TAAACTTTTTTTCTCTTCTT+TGG + chr7_1:76177780-76177799 Msa1039070:intron 20.0%
!!! AAACTTTTTTTCTCTTCTTT+GGG + chr7_1:76177781-76177800 Msa1039070:intron 20.0%
!! ATACAGAAAAAAAAATGAAC+TGG - chr7_1:76178003-76178022 None:intergenic 20.0%
!! TCAACAGAACAAAAATTATT+CGG - chr7_1:76178340-76178359 None:intergenic 20.0%
!!! AAACTTATTTTGGTTTTCTA+AGG + chr7_1:76178464-76178483 Msa1039070:intron 20.0%
!!! AACTTATTTTGGTTTTCTAA+GGG + chr7_1:76178465-76178484 Msa1039070:intron 20.0%
!! CTAATAAAATAGCATACAAA+AGG - chr7_1:76179807-76179826 None:intergenic 20.0%
!! ACATAAAGATAAGTTATTAC+TGG - chr7_1:76180074-76180093 None:intergenic 20.0%
!! ATCTTTATGTTTAATTAAGC+TGG + chr7_1:76180084-76180103 Msa1039070:three_prime_UTR 20.0%
!! TCTTTATGTTTAATTAAGCT+GGG + chr7_1:76180085-76180104 Msa1039070:three_prime_UTR 20.0%
!!! TCATTTTTTGTTTCTCTGAA+TGG + chr7_1:76178293-76178312 Msa1039070:intron 25.0%
!! GATTTTATGTCAAAACAGAA+TGG + chr7_1:76178880-76178899 Msa1039070:intron 25.0%
!!! TTTTATTAGTTAGCTTGACT+AGG + chr7_1:76179818-76179837 Msa1039070:intron 25.0%
!! TAATTTGGGTTTAAACCTTA+TGG + chr7_1:76180115-76180134 Msa1039070:three_prime_UTR 25.0%
! CATAGTAAATATAACCCAAT+AGG - chr7_1:76180184-76180203 None:intergenic 25.0%
! CTATTGGGTTATATTTACTA+TGG + chr7_1:76180182-76180201 Msa1039070:three_prime_UTR 25.0%
! GAGTTGTTATGATAATGCTT+TGG - chr7_1:76177820-76177839 None:intergenic 30.0%
AAAACTGAGAACCTGAAAAA+GGG - chr7_1:76177931-76177950 None:intergenic 30.0%
GAATGGAGAATACATATTAC+TGG + chr7_1:76178310-76178329 Msa1039070:intron 30.0%
!! GAAGATTTGTTGATCAAATC+TGG + chr7_1:76178487-76178506 Msa1039070:intron 30.0%
GATTTATGCATGTCATGAAA+TGG + chr7_1:76178594-76178613 Msa1039070:intron 30.0%
CATAAAATCAAACACGTGAT+CGG - chr7_1:76178869-76178888 None:intergenic 30.0%
AAAACAGAATGGATCATCAA+GGG + chr7_1:76178891-76178910 Msa1039070:intron 30.0%
CCATCAAAGATCAAGTATAA+GGG - chr7_1:76179873-76179892 None:intergenic 30.0%
ACCATCAAAGATCAAGTATA+AGG - chr7_1:76179874-76179893 None:intergenic 30.0%
! CGCACATTTACTGTTATTTA+TGG + chr7_1:76179894-76179913 Msa1039070:intron 30.0%
AAGGCAATTTCAGACATAAA+AGG - chr7_1:76179925-76179944 None:intergenic 30.0%
AAGCTGGGTAAAATGTAATT+TGG + chr7_1:76180100-76180119 Msa1039070:three_prime_UTR 30.0%
AGCTGGGTAAAATGTAATTT+GGG + chr7_1:76180101-76180120 Msa1039070:three_prime_UTR 30.0%
TAAAGGAATCATAGATTTGC+AGG - chr7_1:76180244-76180263 None:intergenic 30.0%
!! GATTGATGATGGTGTTTGTT+TGG - chr7_1:76177732-76177751 None:intergenic 35.0%
!! TCTTGTTTGATCCCTTTTTC+AGG + chr7_1:76177917-76177936 Msa1039070:intron 35.0%
GAAAACTGAGAACCTGAAAA+AGG - chr7_1:76177932-76177951 None:intergenic 35.0%
!!! AACCAAGCTTCGTTTTTTGA+GGG + chr7_1:76177956-76177975 Msa1039070:five_prime_UTR 35.0%
TTCATAGTTATGCTGTAACG+TGG + chr7_1:76178056-76178075 Msa1039070:intron 35.0%
AAATTCTTAGCTTCCATCAC+AGG - chr7_1:76178202-76178221 None:intergenic 35.0%
TTCGAGATACAATTGTGCAT+GGG + chr7_1:76178542-76178561 Msa1039070:intron 35.0%
AAGCTCAGGAGAAAAATAAC+AGG - chr7_1:76178625-76178644 None:intergenic 35.0%
GTTTAATGCACAGGAAAAAC+GGG - chr7_1:76178746-76178765 None:intergenic 35.0%
CGTTTAATGCACAGGAAAAA+CGG - chr7_1:76178747-76178766 None:intergenic 35.0%
! CGTTTTTCCTGTGCATTAAA+CGG + chr7_1:76178745-76178764 Msa1039070:intron 35.0%
CAACATTTCACAAACGACAA+AGG - chr7_1:76178846-76178865 None:intergenic 35.0%
CAAAACAGAATGGATCATCA+AGG + chr7_1:76178890-76178909 Msa1039070:intron 35.0%
!! TCATTTGGTTTGGCTGATAT+GGG - chr7_1:76178979-76178998 None:intergenic 35.0%
! CAGTAACCTTTTCAATTTCC+TGG - chr7_1:76179165-76179184 None:intergenic 35.0%
AAGGATCAAGAAGATCATGA+AGG + chr7_1:76179213-76179232 Msa1039070:CDS 35.0%
! GACTGATATCTTTGATTTCC+TGG + chr7_1:76179396-76179415 Msa1039070:CDS 35.0%
CCCTTATACTTGATCTTTGA+TGG + chr7_1:76179870-76179889 Msa1039070:intron 35.0%
GGTTTAAACCTTATGGTCTT+CGG + chr7_1:76180122-76180141 Msa1039070:three_prime_UTR 35.0%
TATATCATCCGAAGACCATA+AGG - chr7_1:76180133-76180152 None:intergenic 35.0%
! TTAGCACTTTTGTCTCTCAG+AGG + chr7_1:76177652-76177671 Msa1039070:five_prime_UTR 40.0%
GTTGTTGCGAAGATTGATGA+TGG - chr7_1:76177743-76177762 None:intergenic 40.0%
AATCGTGAGAAACGAGAGAA+TGG - chr7_1:76177896-76177915 None:intergenic 40.0%
!!! GAACCAAGCTTCGTTTTTTG+AGG + chr7_1:76177955-76177974 Msa1039070:five_prime_UTR 40.0%
TTCCCTCAAAAAACGAAGCT+TGG - chr7_1:76177961-76177980 None:intergenic 40.0%
!!! AAGCTTCGTTTTTTGAGGGA+AGG + chr7_1:76177960-76177979 Msa1039070:five_prime_UTR 40.0%
CTAAAAGACCTGTTCACACA+AGG - chr7_1:76178406-76178425 None:intergenic 40.0%
GTTCGAGATACAATTGTGCA+TGG + chr7_1:76178541-76178560 Msa1039070:intron 40.0%
! TCGTTTTCGATCATGACACA+CGG + chr7_1:76178648-76178667 Msa1039070:intron 40.0%
!! TGATATGGGTTAGATCCGTA+CGG - chr7_1:76178965-76178984 None:intergenic 40.0%
!! GTCATTTGGTTTGGCTGATA+TGG - chr7_1:76178980-76178999 None:intergenic 40.0%
TATCAGCCAAACCAAATGAC+TGG + chr7_1:76178980-76178999 Msa1039070:CDS 40.0%
ATCAGCCAAACCAAATGACT+GGG + chr7_1:76178981-76179000 Msa1039070:CDS 40.0%
GATCCGTTGTTACATCAGTT+GGG + chr7_1:76179011-76179030 Msa1039070:CDS 40.0%
ATCCGTTGTTACATCAGTTG+GGG + chr7_1:76179012-76179031 Msa1039070:CDS 40.0%
! CCTTTTCAATTTCCTGGTAC+TGG - chr7_1:76179159-76179178 None:intergenic 40.0%
CCAGTACCAGGAAATTGAAA+AGG + chr7_1:76179156-76179175 Msa1039070:CDS 40.0%
AAGCACCTGTCATATTTGCA+AGG + chr7_1:76179266-76179285 Msa1039070:CDS 40.0%
AGCACCTGTCATATTTGCAA+GGG + chr7_1:76179267-76179286 Msa1039070:CDS 40.0%
CTCCAATATGAACATCTCAC+AGG - chr7_1:76179293-76179312 None:intergenic 40.0%
ACCACACTGAAGAGAACAAA+AGG + chr7_1:76179332-76179351 Msa1039070:CDS 40.0%
! TCCTTTTGTTCTCTTCAGTG+TGG - chr7_1:76179336-76179355 None:intergenic 40.0%
ACACTGAAGAGAACAAAAGG+AGG + chr7_1:76179335-76179354 Msa1039070:CDS 40.0%
ATATTGCTGCTGCAATCACT+AGG + chr7_1:76179374-76179393 Msa1039070:CDS 40.0%
ATGCTGAGATGTGGATGTTA+AGG + chr7_1:76179682-76179701 Msa1039070:three_prime_UTR 40.0%
CTGAAATTGCCTTCATTTCC+TGG + chr7_1:76179932-76179951 Msa1039070:intron 40.0%
ATCAGAAACTGTAGCTGAGA+TGG + chr7_1:76180012-76180031 Msa1039070:three_prime_UTR 40.0%
TGCAGACTTCTATTGCCTAT+TGG + chr7_1:76180166-76180185 Msa1039070:three_prime_UTR 40.0%
GCAGACTTCTATTGCCTATT+GGG + chr7_1:76180167-76180186 Msa1039070:three_prime_UTR 40.0%
ATCGAAAACGACGTAAGCTC+AGG - chr7_1:76178639-76178658 None:intergenic 45.0%
TTTCGATCATGACACACGGT+TGG + chr7_1:76178652-76178671 Msa1039070:intron 45.0%
TTCGATCATGACACACGGTT+GGG + chr7_1:76178653-76178672 Msa1039070:intron 45.0%
CGACACAGGCTCAGAAAAAA+CGG - chr7_1:76178696-76178715 None:intergenic 45.0%
AGCGTAACCGTTTAATGCAC+AGG - chr7_1:76178755-76178774 None:intergenic 45.0%
CACAACCAGAATCCGCAAAT+GGG + chr7_1:76178914-76178933 Msa1039070:CDS 45.0%
ACAACCAGAATCCGCAAATG+GGG + chr7_1:76178915-76178934 Msa1039070:CDS 45.0%
TCAGCCAAACCAAATGACTG+GGG + chr7_1:76178982-76179001 Msa1039070:CDS 45.0%
TGATGTAACAACGGATCCTG+GGG - chr7_1:76179008-76179027 None:intergenic 45.0%
CTGATGTAACAACGGATCCT+GGG - chr7_1:76179009-76179028 None:intergenic 45.0%
ACTGATGTAACAACGGATCC+TGG - chr7_1:76179010-76179029 None:intergenic 45.0%
GGATCCGTTGTTACATCAGT+TGG + chr7_1:76179010-76179029 Msa1039070:CDS 45.0%
TCCGTTGTTACATCAGTTGG+GGG + chr7_1:76179013-76179032 Msa1039070:CDS 45.0%
ATCTTCTTGATCCTTGCCAG+AGG - chr7_1:76179208-76179227 None:intergenic 45.0%
GAAGATCATGAAGGCTGATG+AGG + chr7_1:76179222-76179241 Msa1039070:CDS 45.0%
GGCCTGTGAGATGTTCATAT+TGG + chr7_1:76179288-76179307 Msa1039070:CDS 45.0%
AAGCCAGCACTTCATCTTTC+AGG - chr7_1:76179444-76179463 None:intergenic 45.0%
!! TGGAACTGCTGGTGTCATAA+TGG + chr7_1:76179549-76179568 Msa1039070:CDS 45.0%
!! GGAACTGCTGGTGTCATAAT+GGG + chr7_1:76179550-76179569 Msa1039070:CDS 45.0%
! CATAATGGGAAAGCCTGTGA+TGG + chr7_1:76179564-76179583 Msa1039070:CDS 45.0%
TACATGTTTGGGTCCATCAC+AGG - chr7_1:76179580-76179599 None:intergenic 45.0%
GCTGCTGAGCATACATGTTT+GGG - chr7_1:76179591-76179610 None:intergenic 45.0%
!! CACATTTGTGGTGCCATGTA+GGG - chr7_1:76179619-76179638 None:intergenic 45.0%
ATCTAGTGATCTGGAGATGG+TGG - chr7_1:76179664-76179683 None:intergenic 45.0%
AGCATCTAGTGATCTGGAGA+TGG - chr7_1:76179667-76179686 None:intergenic 45.0%
CATCTCAGCATCTAGTGATC+TGG - chr7_1:76179673-76179692 None:intergenic 45.0%
GATCACTAGATGCTGAGATG+TGG + chr7_1:76179673-76179692 Msa1039070:exon 45.0%
ATCTGCAAGCCAGGAAATGA+AGG - chr7_1:76179944-76179963 None:intergenic 45.0%
AGATTGCAGGGAACTGCAAT+GGG + chr7_1:76179960-76179979 Msa1039070:intron 45.0%
TGGGTGTGAAACTGTTCCAT+TGG + chr7_1:76179985-76180004 Msa1039070:three_prime_UTR 45.0%
ACAGTTTCTGATCGCACCAA+TGG - chr7_1:76180004-76180023 None:intergenic 45.0%
GGAATCATAGATTTGCAGGC+AGG - chr7_1:76180240-76180259 None:intergenic 45.0%
CCATGAGAGTTGACTGCTAA+AGG - chr7_1:76180261-76180280 None:intergenic 45.0%
CCTTTAGCAGTCAACTCTCA+TGG + chr7_1:76180258-76180277 Msa1039070:three_prime_UTR 45.0%
TGTGTGAAGCTGACCTGTGA+TGG + chr7_1:76178186-76178205 Msa1039070:intron 50.0%
TGTGCATGCCTTGTGTGAAC+AGG + chr7_1:76178395-76178414 Msa1039070:intron 50.0%
TCGATCATGACACACGGTTG+GGG + chr7_1:76178654-76178673 Msa1039070:intron 50.0%
GTCGTGATCGAAAACGACAC+AGG - chr7_1:76178710-76178729 None:intergenic 50.0%
GCACAACCAGAATCCGCAAA+TGG + chr7_1:76178913-76178932 Msa1039070:CDS 50.0%
CAACCAGAATCCGCAAATGG+GGG + chr7_1:76178916-76178935 Msa1039070:CDS 50.0%
AATCCGCAAATGGGGGTTGT+CGG + chr7_1:76178923-76178942 Msa1039070:CDS 50.0%
GCCCCCAACTGATGTAACAA+CGG - chr7_1:76179017-76179036 None:intergenic 50.0%
! GTTGCTGCTGATGGATATGC+TGG - chr7_1:76179096-76179115 None:intergenic 50.0%
AGCAACAGCTGCAATCCTTC+TGG + chr7_1:76179128-76179147 Msa1039070:CDS 50.0%
!! CTGGTACTGGTTTGACCAGA+AGG - chr7_1:76179146-76179165 None:intergenic 50.0%
CTTCTGGTCAAACCAGTACC+AGG + chr7_1:76179144-76179163 Msa1039070:CDS 50.0%
TCTTGATCCTTGCCAGAGGA+AGG - chr7_1:76179204-76179223 None:intergenic 50.0%
CAGGCCCTTGCAAATATGAC+AGG - chr7_1:76179274-76179293 None:intergenic 50.0%
! TCATCTTTCAGGTCCTCACG+AGG - chr7_1:76179433-76179452 None:intergenic 50.0%
GGACCTGAAAGATGAAGTGC+TGG + chr7_1:76179438-76179457 Msa1039070:CDS 50.0%
!! GTGCTGGCTTCAATTCCAAG+AGG + chr7_1:76179454-76179473 Msa1039070:CDS 50.0%
! GCAACAGGCATTGTTCCTCT+TGG - chr7_1:76179472-76179491 None:intergenic 50.0%
AGAGGAACAATGCCTGTTGC+TGG + chr7_1:76179472-76179491 Msa1039070:CDS 50.0%
!! CAGTAAGGAAGAGCATCAGC+AGG - chr7_1:76179499-76179518 None:intergenic 50.0%
TGAGGTGGCATGTAGCAGTA+AGG - chr7_1:76179514-76179533 None:intergenic 50.0%
GACACCAGCAGTTCCAACTT+GGG - chr7_1:76179545-76179564 None:intergenic 50.0%
TGACACCAGCAGTTCCAACT+TGG - chr7_1:76179546-76179565 None:intergenic 50.0%
GGCTGCTGAGCATACATGTT+TGG - chr7_1:76179592-76179611 None:intergenic 50.0%
!! TTGTGGTGCCATGTAGGGAT+GGG - chr7_1:76179614-76179633 None:intergenic 50.0%
!! TTTGTGGTGCCATGTAGGGA+TGG - chr7_1:76179615-76179634 None:intergenic 50.0%
!! CCACATTTGTGGTGCCATGT+AGG - chr7_1:76179620-76179639 None:intergenic 50.0%
CCTACATGGCACCACAAATG+TGG + chr7_1:76179617-76179636 Msa1039070:CDS 50.0%
! TTTCCTGGCTTGCAGATTGC+AGG + chr7_1:76179947-76179966 Msa1039070:intron 50.0%
! TTCCTGGCTTGCAGATTGCA+GGG + chr7_1:76179948-76179967 Msa1039070:intron 50.0%
CAGATTGCAGGGAACTGCAA+TGG + chr7_1:76179959-76179978 Msa1039070:intron 50.0%
GATTGCAGGGAACTGCAATG+GGG + chr7_1:76179961-76179980 Msa1039070:intron 50.0%
ATTGCAGGGAACTGCAATGG+GGG + chr7_1:76179962-76179981 Msa1039070:three_prime_UTR 50.0%
CGATCATGACACACGGTTGG+GGG + chr7_1:76178655-76178674 Msa1039070:intron 55.0%
!! GTTGGGGGCACTGCAATAGA+GGG + chr7_1:76178670-76178689 Msa1039070:intron 55.0%
CAACCCCCATTTGCGGATTC+TGG - chr7_1:76178922-76178941 None:intergenic 55.0%
CTACCGACAACCCCCATTTG+CGG - chr7_1:76178929-76178948 None:intergenic 55.0%
CAAATGGGGGTTGTCGGTAG+CGG + chr7_1:76178929-76178948 Msa1039070:CDS 55.0%
AGCGGCAGTCAAATGCCGTA+CGG + chr7_1:76178947-76178966 Msa1039070:CDS 55.0%
GTTGCTGCTGTTGCTGCTGA+TGG - chr7_1:76179105-76179124 None:intergenic 55.0%
CAAGAACCACAGCCTTCCTC+TGG + chr7_1:76179189-76179208 Msa1039070:CDS 55.0%
TGGAGTTAACCCTGCGCTCA+TGG + chr7_1:76179308-76179327 Msa1039070:CDS 55.0%
AGTGTGGTTCCATGAGCGCA+GGG - chr7_1:76179320-76179339 None:intergenic 55.0%
CACGAGGCACAATGTCAACC+AGG - chr7_1:76179417-76179436 None:intergenic 55.0%
GGTTGACATTGTGCCTCGTG+AGG + chr7_1:76179417-76179436 Msa1039070:CDS 55.0%
ACCAGCAGTTCCAACTTGGG+AGG - chr7_1:76179542-76179561 None:intergenic 55.0%
!! TGTGGTGCCATGTAGGGATG+GGG - chr7_1:76179613-76179632 None:intergenic 55.0%
ACAAATGTGGCCACAGCCTC+CGG + chr7_1:76179630-76179649 Msa1039070:CDS 55.0%
TTCCCTGCAATCTGCAAGCC+AGG - chr7_1:76179953-76179972 None:intergenic 55.0%
!! GGTTGGGGGCACTGCAATAG+AGG + chr7_1:76178669-76178688 Msa1039070:intron 60.0%
GGGGCCCCAGTCATTTGGTT+TGG - chr7_1:76178989-76179008 None:intergenic 60.0%
AACCAAATGACTGGGGCCCC+AGG + chr7_1:76178989-76179008 Msa1039070:CDS 60.0%
ATCCTGGGGCCCCAGTCATT+TGG - chr7_1:76178994-76179013 None:intergenic 60.0%
CAGTCCACTGGTCAACCTGC+TGG + chr7_1:76179040-76179059 Msa1039070:CDS 60.0%
! AGCTCCAGCAGGTTGACCAG+TGG - chr7_1:76179047-76179066 None:intergenic 60.0%
TCAACCTGCTGGAGCTCAGC+TGG + chr7_1:76179051-76179070 Msa1039070:CDS 60.0%
CAACCTGCTGGAGCTCAGCT+GGG + chr7_1:76179052-76179071 Msa1039070:CDS 60.0%
ACCACAGCCTTCCTCTGGCA+AGG + chr7_1:76179194-76179213 Msa1039070:CDS 60.0%
TCCTTGCCAGAGGAAGGCTG+TGG - chr7_1:76179198-76179217 None:intergenic 60.0%
CAGTGTGGTTCCATGAGCGC+AGG - chr7_1:76179321-76179340 None:intergenic 60.0%
GCATCAGCAGGACCAGCAAC+AGG - chr7_1:76179487-76179506 None:intergenic 60.0%
! ACTTGGGAGGCATGCTGAGG+TGG - chr7_1:76179529-76179548 None:intergenic 60.0%
! CCAACTTGGGAGGCATGCTG+AGG - chr7_1:76179532-76179551 None:intergenic 60.0%
CCTCAGCATGCCTCCCAAGT+TGG + chr7_1:76179529-76179548 Msa1039070:CDS 60.0%
! GCCTCCCAAGTTGGAACTGC+TGG + chr7_1:76179538-76179557 Msa1039070:CDS 60.0%
TCAGCAGCCCCATCCCTACA+TGG + chr7_1:76179603-76179622 Msa1039070:CDS 60.0%
GGAGGCTGTGGCCACATTTG+TGG - chr7_1:76179631-76179650 None:intergenic 60.0%
! GGAGATGGTGGTCGCTGTTC+CGG - chr7_1:76179652-76179671 None:intergenic 60.0%
CAGGGAACTGCAATGGGGGT+GGG + chr7_1:76179966-76179985 Msa1039070:three_prime_UTR 60.0%
! GTTGGGGGCATGCAGTCCAC+TGG + chr7_1:76179028-76179047 Msa1039070:CDS 65.0%
TGACCCAGCTGAGCTCCAGC+AGG - chr7_1:76179058-76179077 None:intergenic 65.0%
! GATGGTGGTCGCTGTTCCGG+AGG - chr7_1:76179649-76179668 None:intergenic 65.0%
GCAGGGAACTGCAATGGGGG+TGG + chr7_1:76179965-76179984 Msa1039070:three_prime_UTR 65.0%
GGTCGCTGTTCCGGAGGCTG+TGG - chr7_1:76179643-76179662 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 76177612 76180293 76177612 ID=Msa1039070;Name=Msa1039070
chr7_1 mRNA 76177612 76180293 76177612 ID=Msa1039070-mRNA-1;Parent=Msa1039070;Name=Msa1039070-mRNA-1;_AED=0.01;_eAED=0.01;_QI=106|1|1|1|0|0|4|354|260
chr7_1 exon 76177612 76177673 76177612 ID=Msa1039070-mRNA-1:exon:19653;Parent=Msa1039070-mRNA-1
chr7_1 exon 76177939 76177981 76177939 ID=Msa1039070-mRNA-1:exon:19654;Parent=Msa1039070-mRNA-1
chr7_1 exon 76178898 76179703 76178898 ID=Msa1039070-mRNA-1:exon:19655;Parent=Msa1039070-mRNA-1
chr7_1 exon 76179962 76180293 76179962 ID=Msa1039070-mRNA-1:exon:19656;Parent=Msa1039070-mRNA-1
chr7_1 five_prime_UTR 76177612 76177673 76177612 ID=Msa1039070-mRNA-1:five_prime_utr;Parent=Msa1039070-mRNA-1
chr7_1 five_prime_UTR 76177939 76177981 76177939 ID=Msa1039070-mRNA-1:five_prime_utr;Parent=Msa1039070-mRNA-1
chr7_1 five_prime_UTR 76178898 76178898 76178898 ID=Msa1039070-mRNA-1:five_prime_utr;Parent=Msa1039070-mRNA-1
chr7_1 CDS 76178899 76179681 76178899 ID=Msa1039070-mRNA-1:cds;Parent=Msa1039070-mRNA-1
chr7_1 three_prime_UTR 76179682 76179703 76179682 ID=Msa1039070-mRNA-1:three_prime_utr;Parent=Msa1039070-mRNA-1
chr7_1 three_prime_UTR 76179962 76180293 76179962 ID=Msa1039070-mRNA-1:three_prime_utr;Parent=Msa1039070-mRNA-1
Gene Sequence

>Msa1039070

ATGGATCATCAAGGGCACAACCAGAATCCGCAAATGGGGGTTGTCGGTAGCGGCAGTCAAATGCCGTACGGATCTAACCCATATCAGCCAAACCAAATGACTGGGGCCCCAGGATCCGTTGTTACATCAGTTGGGGGCATGCAGTCCACTGGTCAACCTGCTGGAGCTCAGCTGGGTCAGCATCAACTTGCTTACCAGCATATCCATCAGCAGCAACAGCAGCAACTTCAGCAACAGCTGCAATCCTTCTGGTCAAACCAGTACCAGGAAATTGAAAAGGTTACTGATTTCAAGAACCACAGCCTTCCTCTGGCAAGGATCAAGAAGATCATGAAGGCTGATGAGGATGTTAGAATGATATCAGCTGAAGCACCTGTCATATTTGCAAGGGCCTGTGAGATGTTCATATTGGAGTTAACCCTGCGCTCATGGAACCACACTGAAGAGAACAAAAGGAGGACACTTCAGAAGAATGATATTGCTGCTGCAATCACTAGGACTGATATCTTTGATTTCCTGGTTGACATTGTGCCTCGTGAGGACCTGAAAGATGAAGTGCTGGCTTCAATTCCAAGAGGAACAATGCCTGTTGCTGGTCCTGCTGATGCTCTTCCTTACTGCTACATGCCACCTCAGCATGCCTCCCAAGTTGGAACTGCTGGTGTCATAATGGGAAAGCCTGTGATGGACCCAAACATGTATGCTCAGCAGCCCCATCCCTACATGGCACCACAAATGTGGCCACAGCCTCCGGAACAGCGACCACCATCTCCAGATCACTAG
Protein sequence

>Msa1039070

MDHQGHNQNPQMGVVGSGSQMPYGSNPYQPNQMTGAPGSVVTSVGGMQSTGQPAGAQLGQHQLAYQHIHQQQQQQLQQQLQSFWSNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADALPYCYMPPQHASQVGTAGVIMGKPVMDPNMYAQQPHPYMAPQMWPQPPEQRPPSPDH*