Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1040920 | XP_003625999.1 | 95.370 | 216 | 10 | 0 | 1 | 216 | 1 | 216 | 2.27e-147 | 419 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1040920 | sp|Q93W77|NIFU1_ARATH | 66.667 | 204 | 54 | 4 | 23 | 216 | 32 | 231 | 1.28e-87 | 261 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1040920 | G7KTN7 | 95.370 | 216 | 10 | 0 | 1 | 216 | 1 | 216 | 1.09e-147 | 419 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1040920 | Msa1041080 | 0.806574 | 7.700338e-50 | -8.615850e-47 |
| Msa1040920 | Msa1081850 | 0.812113 | 4.991078e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1040920 | MtrunA17_Chr7g0270231 | 95.370 | 216 | 10 | 0 | 1 | 216 | 1 | 216 | 2.09e-151 | 419 |
| Msa1040920 | MtrunA17_Chr8g0352991 | 87.121 | 132 | 17 | 0 | 1 | 132 | 1 | 132 | 1.48e-80 | 237 |
| Msa1040920 | MtrunA17_Chr2g0277211 | 42.949 | 156 | 83 | 3 | 64 | 214 | 68 | 222 | 3.01e-30 | 111 |
| Msa1040920 | MtrunA17_Chr2g0298061 | 39.860 | 143 | 84 | 2 | 67 | 208 | 89 | 230 | 7.63e-24 | 95.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1040920 | AT4G01940.1 | 66.667 | 204 | 54 | 4 | 23 | 216 | 32 | 231 | 1.30e-88 | 261 |
| Msa1040920 | AT5G49940.1 | 35.897 | 195 | 109 | 5 | 25 | 214 | 51 | 234 | 1.27e-26 | 102 |
| Msa1040920 | AT5G49940.2 | 40.146 | 137 | 67 | 4 | 25 | 161 | 51 | 172 | 3.01e-22 | 90.1 |
| Msa1040920 | AT4G25910.1 | 32.719 | 217 | 127 | 7 | 12 | 210 | 11 | 226 | 1.63e-21 | 89.4 |
Find 49 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTGCACAATATCTTTAA+TGG | 0.141568 | 7_1:+78414363 | None:intergenic |
| CTCAACCACAACTATGAAAA+TGG | 0.150095 | 7_1:-78414422 | Msa1040920:CDS |
| CGCGTTCTTAAGGAGAAATT+TGG | 0.260422 | 7_1:-78414391 | Msa1040920:CDS |
| TTCGTTGGTATTGAACAAAT+TGG | 0.356289 | 7_1:+78414751 | None:intergenic |
| GGGAATCGAACGCGTTCTTA+AGG | 0.368074 | 7_1:-78414401 | Msa1040920:CDS |
| AAGGTAACATTGAGAATATC+TGG | 0.389748 | 7_1:+78413036 | None:intergenic |
| GAAGTTCTTGAATATTGCTT+TGG | 0.401148 | 7_1:+78414664 | None:intergenic |
| CTGGTTCTCGTTAGCGGTAG+AGG | 0.402092 | 7_1:+78414621 | None:intergenic |
| CATAAGACCCATCATTTGAT+AGG | 0.420803 | 7_1:-78412876 | Msa1040920:three_prime_UTR |
| GGAGTTAGAGTCGCCATTGA+TGG | 0.424710 | 7_1:+78414772 | None:intergenic |
| ATTTAAGTCCTATCAAATGA+TGG | 0.449168 | 7_1:+78412868 | None:intergenic |
| TAACGAGAACCAGTCTTCTC+CGG | 0.458318 | 7_1:-78414611 | Msa1040920:CDS |
| TCAACCACAACTATGAAAAT+GGG | 0.480712 | 7_1:-78414421 | Msa1040920:CDS |
| AGTATAATCCCGGAGAAGAC+TGG | 0.483617 | 7_1:+78414602 | None:intergenic |
| TGCTCATTACGCACCATCAA+TGG | 0.491908 | 7_1:-78414785 | Msa1040920:exon |
| GGACCTGAGTCCATTGGATC+AGG | 0.493608 | 7_1:-78413087 | Msa1040920:CDS |
| AGAAGACTGGTTCTCGTTAG+CGG | 0.500401 | 7_1:+78414615 | None:intergenic |
| AGGTGTTAAAGCTGCGATCA+AGG | 0.501612 | 7_1:-78413067 | Msa1040920:CDS |
| GATGTTGTATCCGTTGAAAA+CGG | 0.506210 | 7_1:-78414490 | Msa1040920:CDS |
| TTCATAGTTGTGGTTGAGCT+AGG | 0.507201 | 7_1:+78414427 | None:intergenic |
| ATTCTCAAATTCAGTTTCGT+TGG | 0.513374 | 7_1:+78414736 | None:intergenic |
| TATGTTGGACCTGAGTCCAT+TGG | 0.522225 | 7_1:-78413093 | Msa1040920:CDS |
| AGCAGTGAGGTCGAATTTCG+TGG | 0.529405 | 7_1:+78414576 | None:intergenic |
| AACGAGAACCAGTCTTCTCC+GGG | 0.536226 | 7_1:-78414610 | Msa1040920:CDS |
| TTCGTGGCGGAGTATAATCC+CGG | 0.541925 | 7_1:+78414592 | None:intergenic |
| TATCTTAGTCTATCAATACT+TGG | 0.545113 | 7_1:-78412773 | Msa1040920:three_prime_UTR |
| GTCGTTTCTCTTAAGCTACA+AGG | 0.546334 | 7_1:-78414466 | Msa1040920:CDS |
| AATTGCTACCTAGGTGGAGA+AGG | 0.556964 | 7_1:+78413017 | None:intergenic |
| TTTAAGTCCTATCAAATGAT+GGG | 0.557737 | 7_1:+78412869 | None:intergenic |
| GACTGTGTTGTGGAATATGT+TGG | 0.562518 | 7_1:-78413108 | Msa1040920:CDS |
| AGCAAGGGAAACAACGGTTG+AGG | 0.563035 | 7_1:-78414326 | Msa1040920:intron |
| TGAAGGTGGTGACTGTGTTG+TGG | 0.573198 | 7_1:-78413118 | Msa1040920:CDS |
| CCTCCGTCAGAGATGAGGTA+AGG | 0.579366 | 7_1:+78414520 | None:intergenic |
| CGTCCTTACCTCATCTCTGA+CGG | 0.582206 | 7_1:-78414523 | Msa1040920:CDS |
| AGCTTTAACACCTGATCCAA+TGG | 0.583998 | 7_1:+78413077 | None:intergenic |
| ATTGAATTGAATTGCTACCT+AGG | 0.588253 | 7_1:+78413008 | None:intergenic |
| CGTTTCCTCCGTCAGAGATG+AGG | 0.588496 | 7_1:+78414515 | None:intergenic |
| CAATGTTACCTTCTCCACCT+AGG | 0.589162 | 7_1:-78413025 | Msa1040920:exon |
| CGTTAGCGGTAGAGGATGAA+CGG | 0.600517 | 7_1:+78414629 | None:intergenic |
| TGTTTGATGATGATCAAGCA+AGG | 0.620834 | 7_1:-78414342 | Msa1040920:CDS |
| GTTTGATGATGATCAAGCAA+GGG | 0.625912 | 7_1:-78414341 | Msa1040920:CDS |
| CCTTACCTCATCTCTGACGG+AGG | 0.627657 | 7_1:-78414520 | Msa1040920:CDS |
| TCATCTAGAGATACTGAGAC+CGG | 0.630070 | 7_1:-78413181 | Msa1040920:CDS |
| ACACCTGATCCAATGGACTC+AGG | 0.634250 | 7_1:+78413084 | None:intergenic |
| GAATTGAATTGCTACCTAGG+TGG | 0.663541 | 7_1:+78413011 | None:intergenic |
| TGATCAAGCAAGGGAAACAA+CGG | 0.689446 | 7_1:-78414332 | Msa1040920:CDS |
| AGAGGATGAACGGATTACTG+TGG | 0.730832 | 7_1:+78414639 | None:intergenic |
| GATCGACGTTTGAAGCAGTG+AGG | 0.744018 | 7_1:+78414563 | None:intergenic |
| AGTGAGGTCGAATTTCGTGG+CGG | 0.769982 | 7_1:+78414579 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATATACATACAAACAA+AGG | - | chr7_1:78413418-78413437 | Msa1040920:intron | 15.0% |
| !!! | AATGTTTTTATAACCTATAT+TGG | - | chr7_1:78413834-78413853 | Msa1040920:intron | 15.0% |
| !!! | TTGATATTGAAAATTGATTT+TGG | + | chr7_1:78414201-78414220 | None:intergenic | 15.0% |
| !! | TTTAATATACATACAAACAA+AGG | - | chr7_1:78413418-78413437 | Msa1040920:intron | 15.0% |
| !!! | AATGTTTTTATAACCTATAT+TGG | - | chr7_1:78413834-78413853 | Msa1040920:intron | 15.0% |
| !!! | TTGATATTGAAAATTGATTT+TGG | + | chr7_1:78414201-78414220 | None:intergenic | 15.0% |
| !! | ATAGTAAATGCAAAAAGTAA+GGG | + | chr7_1:78413262-78413281 | None:intergenic | 20.0% |
| !! | AATAGTAAATGCAAAAAGTA+AGG | + | chr7_1:78413263-78413282 | None:intergenic | 20.0% |
| !! | GGACAAAAATAAAATCAAAT+GGG | + | chr7_1:78413316-78413335 | None:intergenic | 20.0% |
| !! | AAGTTAGTAGTATTAATTAG+GGG | + | chr7_1:78413385-78413404 | None:intergenic | 20.0% |
| !! | CAAGTTAGTAGTATTAATTA+GGG | + | chr7_1:78413386-78413405 | None:intergenic | 20.0% |
| !! | ACAAGTTAGTAGTATTAATT+AGG | + | chr7_1:78413387-78413406 | None:intergenic | 20.0% |
| !! | AGAAATGTGAAAAATACAAA+AGG | - | chr7_1:78413501-78413520 | Msa1040920:intron | 20.0% |
| !! | GAAATGTGAAAAATACAAAA+GGG | - | chr7_1:78413502-78413521 | Msa1040920:intron | 20.0% |
| !! | ATATGAAGTGATCAATTTAT+TGG | - | chr7_1:78413652-78413671 | Msa1040920:intron | 20.0% |
| !! | ATATTAGTTAACATCATGAA+AGG | + | chr7_1:78413699-78413718 | None:intergenic | 20.0% |
| !! | TTGGATAAATAACTTATTTG+CGG | - | chr7_1:78413734-78413753 | Msa1040920:intron | 20.0% |
| !! | ATAGTAAATGCAAAAAGTAA+GGG | + | chr7_1:78413262-78413281 | None:intergenic | 20.0% |
| !! | AATAGTAAATGCAAAAAGTA+AGG | + | chr7_1:78413263-78413282 | None:intergenic | 20.0% |
| !! | GGACAAAAATAAAATCAAAT+GGG | + | chr7_1:78413316-78413335 | None:intergenic | 20.0% |
| !! | AAGTTAGTAGTATTAATTAG+GGG | + | chr7_1:78413385-78413404 | None:intergenic | 20.0% |
| !! | CAAGTTAGTAGTATTAATTA+GGG | + | chr7_1:78413386-78413405 | None:intergenic | 20.0% |
| !! | ACAAGTTAGTAGTATTAATT+AGG | + | chr7_1:78413387-78413406 | None:intergenic | 20.0% |
| !! | AGAAATGTGAAAAATACAAA+AGG | - | chr7_1:78413501-78413520 | Msa1040920:intron | 20.0% |
| !! | GAAATGTGAAAAATACAAAA+GGG | - | chr7_1:78413502-78413521 | Msa1040920:intron | 20.0% |
| !! | ATATGAAGTGATCAATTTAT+TGG | - | chr7_1:78413652-78413671 | Msa1040920:intron | 20.0% |
| !! | ATATTAGTTAACATCATGAA+AGG | + | chr7_1:78413699-78413718 | None:intergenic | 20.0% |
| !! | TTGGATAAATAACTTATTTG+CGG | - | chr7_1:78413734-78413753 | Msa1040920:intron | 20.0% |
| ! | TAGTAAATGCAAAAAGTAAG+GGG | + | chr7_1:78413261-78413280 | None:intergenic | 25.0% |
| ! | CAAAAATAAAATCAAATGGG+TGG | + | chr7_1:78413313-78413332 | None:intergenic | 25.0% |
| ! | GGGACAAAAATAAAATCAAA+TGG | + | chr7_1:78413317-78413336 | None:intergenic | 25.0% |
| !!! | TATTAATTAGGGGTATCTTT+AGG | + | chr7_1:78413375-78413394 | None:intergenic | 25.0% |
| ! | AATACAAAAGGGTTACATTA+AGG | - | chr7_1:78413513-78413532 | Msa1040920:intron | 25.0% |
| ! | ATACAAAAGGGTTACATTAA+GGG | - | chr7_1:78413514-78413533 | Msa1040920:intron | 25.0% |
| !! | CTTTTATGGTTGTTAATGAT+TGG | - | chr7_1:78413550-78413569 | Msa1040920:intron | 25.0% |
| ! | TGTTAACTAATATAGCAACT+AGG | - | chr7_1:78413706-78413725 | Msa1040920:intron | 25.0% |
| ! | TGAAACCAAACATAAACTTA+GGG | + | chr7_1:78413956-78413975 | None:intergenic | 25.0% |
| !!! | TTCCTTTTTAAGCTAGAAAT+TGG | - | chr7_1:78414071-78414090 | Msa1040920:intron | 25.0% |
| ! | TTAGAATCAGTGTATGTTAT+TGG | + | chr7_1:78414256-78414275 | None:intergenic | 25.0% |
| ! | TTTATCTAATGTGCATAGAA+AGG | - | chr7_1:78414287-78414306 | Msa1040920:intron | 25.0% |
| ! | GAAATGAAAATGATGAATGT+TGG | - | chr7_1:78414309-78414328 | Msa1040920:intron | 25.0% |
| ! | TTTAAGTCCTATCAAATGAT+GGG | + | chr7_1:78414684-78414703 | None:intergenic | 25.0% |
| ! | ATTTAAGTCCTATCAAATGA+TGG | + | chr7_1:78414685-78414704 | None:intergenic | 25.0% |
| ! | TATCTTAGTCTATCAATACT+TGG | - | chr7_1:78414777-78414796 | Msa1040920:exon | 25.0% |
| ! | TAGTAAATGCAAAAAGTAAG+GGG | + | chr7_1:78413261-78413280 | None:intergenic | 25.0% |
| ! | CAAAAATAAAATCAAATGGG+TGG | + | chr7_1:78413313-78413332 | None:intergenic | 25.0% |
| ! | GGGACAAAAATAAAATCAAA+TGG | + | chr7_1:78413317-78413336 | None:intergenic | 25.0% |
| !!! | TATTAATTAGGGGTATCTTT+AGG | + | chr7_1:78413375-78413394 | None:intergenic | 25.0% |
| ! | AATACAAAAGGGTTACATTA+AGG | - | chr7_1:78413513-78413532 | Msa1040920:intron | 25.0% |
| ! | ATACAAAAGGGTTACATTAA+GGG | - | chr7_1:78413514-78413533 | Msa1040920:intron | 25.0% |
| !! | CTTTTATGGTTGTTAATGAT+TGG | - | chr7_1:78413550-78413569 | Msa1040920:intron | 25.0% |
| ! | TGTTAACTAATATAGCAACT+AGG | - | chr7_1:78413706-78413725 | Msa1040920:intron | 25.0% |
| ! | TGAAACCAAACATAAACTTA+GGG | + | chr7_1:78413956-78413975 | None:intergenic | 25.0% |
| !!! | TTCCTTTTTAAGCTAGAAAT+TGG | - | chr7_1:78414071-78414090 | Msa1040920:intron | 25.0% |
| ! | TTAGAATCAGTGTATGTTAT+TGG | + | chr7_1:78414256-78414275 | None:intergenic | 25.0% |
| ! | TTTATCTAATGTGCATAGAA+AGG | - | chr7_1:78414287-78414306 | Msa1040920:intron | 25.0% |
| ! | GAAATGAAAATGATGAATGT+TGG | - | chr7_1:78414309-78414328 | Msa1040920:intron | 25.0% |
| ! | TTTAAGTCCTATCAAATGAT+GGG | + | chr7_1:78414684-78414703 | None:intergenic | 25.0% |
| ! | ATTTAAGTCCTATCAAATGA+TGG | + | chr7_1:78414685-78414704 | None:intergenic | 25.0% |
| ! | TATCTTAGTCTATCAATACT+TGG | - | chr7_1:78414777-78414796 | Msa1040920:exon | 25.0% |
| ! | TTCGTTGGTATTGAACAAAT+TGG | + | chr7_1:78412802-78412821 | None:intergenic | 30.0% |
| ATTCTCAAATTCAGTTTCGT+TGG | + | chr7_1:78412817-78412836 | None:intergenic | 30.0% | |
| !!! | TGAGATTGTGTTGTTTTTGT+TGG | + | chr7_1:78412840-78412859 | None:intergenic | 30.0% |
| GAAGTTCTTGAATATTGCTT+TGG | + | chr7_1:78412889-78412908 | None:intergenic | 30.0% | |
| TCAACCACAACTATGAAAAT+GGG | - | chr7_1:78413129-78413148 | Msa1040920:CDS | 30.0% | |
| CACTTGCACAATATCTTTAA+TGG | + | chr7_1:78413190-78413209 | None:intergenic | 30.0% | |
| TGCATCTAGTAATTTGAAGA+GGG | + | chr7_1:78413338-78413357 | None:intergenic | 30.0% | |
| ATGCATCTAGTAATTTGAAG+AGG | + | chr7_1:78413339-78413358 | None:intergenic | 30.0% | |
| CATACAAACAAAGGACAATT+TGG | - | chr7_1:78413427-78413446 | Msa1040920:intron | 30.0% | |
| CCTTATAAGTTCTCCAATAT+AGG | + | chr7_1:78413850-78413869 | None:intergenic | 30.0% | |
| CCTATATTGGAGAACTTATA+AGG | - | chr7_1:78413847-78413866 | Msa1040920:intron | 30.0% | |
| GTGAAACCAAACATAAACTT+AGG | + | chr7_1:78413957-78413976 | None:intergenic | 30.0% | |
| TAAAAAGGAATCAATTCTGG+AGG | + | chr7_1:78414061-78414080 | None:intergenic | 30.0% | |
| GCTTAAAAAGGAATCAATTC+TGG | + | chr7_1:78414064-78414083 | None:intergenic | 30.0% | |
| !! | CTCCAATTTCTAGCTTAAAA+AGG | + | chr7_1:78414076-78414095 | None:intergenic | 30.0% |
| ! | TTTGGTTAAAAGTGAGTTGA+AGG | + | chr7_1:78414183-78414202 | None:intergenic | 30.0% |
| ! | ATGAATGTTGGTTGATGTTT+GGG | - | chr7_1:78414321-78414340 | Msa1040920:intron | 30.0% |
| AGACCGGCAATTAAAAATTA+CGG | - | chr7_1:78414385-78414404 | Msa1040920:CDS | 30.0% | |
| AAGGTAACATTGAGAATATC+TGG | + | chr7_1:78414517-78414536 | None:intergenic | 30.0% | |
| ATTGAATTGAATTGCTACCT+AGG | + | chr7_1:78414545-78414564 | None:intergenic | 30.0% | |
| TCCTTCTTTCTGAATATAGT+TGG | - | chr7_1:78414637-78414656 | Msa1040920:CDS | 30.0% | |
| TCCAACTATATTCAGAAAGA+AGG | + | chr7_1:78414641-78414660 | None:intergenic | 30.0% | |
| ! | TTCGTTGGTATTGAACAAAT+TGG | + | chr7_1:78412802-78412821 | None:intergenic | 30.0% |
| ATTCTCAAATTCAGTTTCGT+TGG | + | chr7_1:78412817-78412836 | None:intergenic | 30.0% | |
| !!! | TGAGATTGTGTTGTTTTTGT+TGG | + | chr7_1:78412840-78412859 | None:intergenic | 30.0% |
| GAAGTTCTTGAATATTGCTT+TGG | + | chr7_1:78412889-78412908 | None:intergenic | 30.0% | |
| TCAACCACAACTATGAAAAT+GGG | - | chr7_1:78413129-78413148 | Msa1040920:CDS | 30.0% | |
| CACTTGCACAATATCTTTAA+TGG | + | chr7_1:78413190-78413209 | None:intergenic | 30.0% | |
| TGCATCTAGTAATTTGAAGA+GGG | + | chr7_1:78413338-78413357 | None:intergenic | 30.0% | |
| ATGCATCTAGTAATTTGAAG+AGG | + | chr7_1:78413339-78413358 | None:intergenic | 30.0% | |
| CATACAAACAAAGGACAATT+TGG | - | chr7_1:78413427-78413446 | Msa1040920:intron | 30.0% | |
| CCTTATAAGTTCTCCAATAT+AGG | + | chr7_1:78413850-78413869 | None:intergenic | 30.0% | |
| CCTATATTGGAGAACTTATA+AGG | - | chr7_1:78413847-78413866 | Msa1040920:intron | 30.0% | |
| GTGAAACCAAACATAAACTT+AGG | + | chr7_1:78413957-78413976 | None:intergenic | 30.0% | |
| TAAAAAGGAATCAATTCTGG+AGG | + | chr7_1:78414061-78414080 | None:intergenic | 30.0% | |
| GCTTAAAAAGGAATCAATTC+TGG | + | chr7_1:78414064-78414083 | None:intergenic | 30.0% | |
| !! | CTCCAATTTCTAGCTTAAAA+AGG | + | chr7_1:78414076-78414095 | None:intergenic | 30.0% |
| ! | TTTGGTTAAAAGTGAGTTGA+AGG | + | chr7_1:78414183-78414202 | None:intergenic | 30.0% |
| ! | ATGAATGTTGGTTGATGTTT+GGG | - | chr7_1:78414321-78414340 | Msa1040920:intron | 30.0% |
| AGACCGGCAATTAAAAATTA+CGG | - | chr7_1:78414385-78414404 | Msa1040920:CDS | 30.0% | |
| AAGGTAACATTGAGAATATC+TGG | + | chr7_1:78414517-78414536 | None:intergenic | 30.0% | |
| ATTGAATTGAATTGCTACCT+AGG | + | chr7_1:78414545-78414564 | None:intergenic | 30.0% | |
| TCCTTCTTTCTGAATATAGT+TGG | - | chr7_1:78414637-78414656 | Msa1040920:CDS | 30.0% | |
| TCCAACTATATTCAGAAAGA+AGG | + | chr7_1:78414641-78414660 | None:intergenic | 30.0% | |
| GATGTTGTATCCGTTGAAAA+CGG | - | chr7_1:78413060-78413079 | Msa1040920:CDS | 35.0% | |
| CTCAACCACAACTATGAAAA+TGG | - | chr7_1:78413128-78413147 | Msa1040920:CDS | 35.0% | |
| ! | GATTCCCATTTTCATAGTTG+TGG | + | chr7_1:78413136-78413155 | None:intergenic | 35.0% |
| !! | TGTTTGATGATGATCAAGCA+AGG | - | chr7_1:78413208-78413227 | Msa1040920:intron | 35.0% |
| !! | GTTTGATGATGATCAAGCAA+GGG | - | chr7_1:78413209-78413228 | Msa1040920:intron | 35.0% |
| GCATCTAGTAATTTGAAGAG+GGG | + | chr7_1:78413337-78413356 | None:intergenic | 35.0% | |
| AAAAGGGTTACATTAAGGGA+CGG | - | chr7_1:78413518-78413537 | Msa1040920:intron | 35.0% | |
| ATATAGCAACTAGGTCTGTT+TGG | - | chr7_1:78413715-78413734 | Msa1040920:intron | 35.0% | |
| ! | ATGTTTGGTTTCACTTCTAG+AGG | - | chr7_1:78413963-78413982 | Msa1040920:intron | 35.0% |
| ! | TGTTTGGTTTCACTTCTAGA+GGG | - | chr7_1:78413964-78413983 | Msa1040920:intron | 35.0% |
| !!! | CACACCTTTAAAACCACTTT+TGG | + | chr7_1:78413991-78414010 | None:intergenic | 35.0% |
| !!! | CAAAAGTGGTTTTAAAGGTG+TGG | - | chr7_1:78413989-78414008 | Msa1040920:intron | 35.0% |
| GTTGAAGGTAAACTGAATGA+TGG | + | chr7_1:78414168-78414187 | None:intergenic | 35.0% | |
| ! | GATGAATGTTGGTTGATGTT+TGG | - | chr7_1:78414320-78414339 | Msa1040920:intron | 35.0% |
| !! | CCTCCGTAATTTTTAATTGC+CGG | + | chr7_1:78414391-78414410 | None:intergenic | 35.0% |
| !! | GTGCAAGTTTTATCTGTTGA+AGG | - | chr7_1:78414415-78414434 | Msa1040920:CDS | 35.0% |
| !! | CAAGTTTTATCTGTTGAAGG+TGG | - | chr7_1:78414418-78414437 | Msa1040920:CDS | 35.0% |
| CATAAGACCCATCATTTGAT+AGG | - | chr7_1:78414674-78414693 | Msa1040920:CDS | 35.0% | |
| GATGTTGTATCCGTTGAAAA+CGG | - | chr7_1:78413060-78413079 | Msa1040920:CDS | 35.0% | |
| CTCAACCACAACTATGAAAA+TGG | - | chr7_1:78413128-78413147 | Msa1040920:CDS | 35.0% | |
| ! | GATTCCCATTTTCATAGTTG+TGG | + | chr7_1:78413136-78413155 | None:intergenic | 35.0% |
| !! | TGTTTGATGATGATCAAGCA+AGG | - | chr7_1:78413208-78413227 | Msa1040920:intron | 35.0% |
| !! | GTTTGATGATGATCAAGCAA+GGG | - | chr7_1:78413209-78413228 | Msa1040920:intron | 35.0% |
| GCATCTAGTAATTTGAAGAG+GGG | + | chr7_1:78413337-78413356 | None:intergenic | 35.0% | |
| AAAAGGGTTACATTAAGGGA+CGG | - | chr7_1:78413518-78413537 | Msa1040920:intron | 35.0% | |
| ATATAGCAACTAGGTCTGTT+TGG | - | chr7_1:78413715-78413734 | Msa1040920:intron | 35.0% | |
| ! | ATGTTTGGTTTCACTTCTAG+AGG | - | chr7_1:78413963-78413982 | Msa1040920:intron | 35.0% |
| ! | TGTTTGGTTTCACTTCTAGA+GGG | - | chr7_1:78413964-78413983 | Msa1040920:intron | 35.0% |
| !!! | CACACCTTTAAAACCACTTT+TGG | + | chr7_1:78413991-78414010 | None:intergenic | 35.0% |
| !!! | CAAAAGTGGTTTTAAAGGTG+TGG | - | chr7_1:78413989-78414008 | Msa1040920:intron | 35.0% |
| GTTGAAGGTAAACTGAATGA+TGG | + | chr7_1:78414168-78414187 | None:intergenic | 35.0% | |
| ! | GATGAATGTTGGTTGATGTT+TGG | - | chr7_1:78414320-78414339 | Msa1040920:intron | 35.0% |
| !! | CCTCCGTAATTTTTAATTGC+CGG | + | chr7_1:78414391-78414410 | None:intergenic | 35.0% |
| !! | GTGCAAGTTTTATCTGTTGA+AGG | - | chr7_1:78414415-78414434 | Msa1040920:CDS | 35.0% |
| !! | CAAGTTTTATCTGTTGAAGG+TGG | - | chr7_1:78414418-78414437 | Msa1040920:CDS | 35.0% |
| CATAAGACCCATCATTTGAT+AGG | - | chr7_1:78414674-78414693 | Msa1040920:CDS | 35.0% | |
| GTCGTTTCTCTTAAGCTACA+AGG | - | chr7_1:78413084-78413103 | Msa1040920:CDS | 40.0% | |
| TTCATAGTTGTGGTTGAGCT+AGG | + | chr7_1:78413126-78413145 | None:intergenic | 40.0% | |
| CGCGTTCTTAAGGAGAAATT+TGG | - | chr7_1:78413159-78413178 | Msa1040920:CDS | 40.0% | |
| TGATCAAGCAAGGGAAACAA+CGG | - | chr7_1:78413218-78413237 | Msa1040920:intron | 40.0% | |
| ! | TGGTAACATTAAGTGACGGA+GGG | + | chr7_1:78413293-78413312 | None:intergenic | 40.0% |
| TGGGTGGTAACATTAAGTGA+CGG | + | chr7_1:78413297-78413316 | None:intergenic | 40.0% | |
| TCAGATACGCCAATTCAAAC+TGG | - | chr7_1:78413930-78413949 | Msa1040920:intron | 40.0% | |
| AACTTAGGGCCAGTTTGAAT+TGG | + | chr7_1:78413942-78413961 | None:intergenic | 40.0% | |
| ACTGGCCCTAAGTTTATGTT+TGG | - | chr7_1:78413948-78413967 | Msa1040920:intron | 40.0% | |
| ! | GTTTGGTTTCACTTCTAGAG+GGG | - | chr7_1:78413965-78413984 | Msa1040920:intron | 40.0% |
| !!! | TGTTTGGGTGTGGGTTTTTT+AGG | - | chr7_1:78414336-78414355 | Msa1040920:CDS | 40.0% |
| TCATCTAGAGATACTGAGAC+CGG | - | chr7_1:78414369-78414388 | Msa1040920:CDS | 40.0% | |
| CCGGCAATTAAAAATTACGG+AGG | - | chr7_1:78414388-78414407 | Msa1040920:CDS | 40.0% | |
| GACTGTGTTGTGGAATATGT+TGG | - | chr7_1:78414442-78414461 | Msa1040920:CDS | 40.0% | |
| ! | AGCTTTAACACCTGATCCAA+TGG | + | chr7_1:78414476-78414495 | None:intergenic | 40.0% |
| GAATTGAATTGCTACCTAGG+TGG | + | chr7_1:78414542-78414561 | None:intergenic | 40.0% | |
| GTCGTTTCTCTTAAGCTACA+AGG | - | chr7_1:78413084-78413103 | Msa1040920:CDS | 40.0% | |
| TTCATAGTTGTGGTTGAGCT+AGG | + | chr7_1:78413126-78413145 | None:intergenic | 40.0% | |
| CGCGTTCTTAAGGAGAAATT+TGG | - | chr7_1:78413159-78413178 | Msa1040920:CDS | 40.0% | |
| TGATCAAGCAAGGGAAACAA+CGG | - | chr7_1:78413218-78413237 | Msa1040920:intron | 40.0% | |
| ! | TGGTAACATTAAGTGACGGA+GGG | + | chr7_1:78413293-78413312 | None:intergenic | 40.0% |
| TGGGTGGTAACATTAAGTGA+CGG | + | chr7_1:78413297-78413316 | None:intergenic | 40.0% | |
| TCAGATACGCCAATTCAAAC+TGG | - | chr7_1:78413930-78413949 | Msa1040920:intron | 40.0% | |
| AACTTAGGGCCAGTTTGAAT+TGG | + | chr7_1:78413942-78413961 | None:intergenic | 40.0% | |
| ACTGGCCCTAAGTTTATGTT+TGG | - | chr7_1:78413948-78413967 | Msa1040920:intron | 40.0% | |
| ! | GTTTGGTTTCACTTCTAGAG+GGG | - | chr7_1:78413965-78413984 | Msa1040920:intron | 40.0% |
| !!! | TGTTTGGGTGTGGGTTTTTT+AGG | - | chr7_1:78414336-78414355 | Msa1040920:CDS | 40.0% |
| TCATCTAGAGATACTGAGAC+CGG | - | chr7_1:78414369-78414388 | Msa1040920:CDS | 40.0% | |
| CCGGCAATTAAAAATTACGG+AGG | - | chr7_1:78414388-78414407 | Msa1040920:CDS | 40.0% | |
| GACTGTGTTGTGGAATATGT+TGG | - | chr7_1:78414442-78414461 | Msa1040920:CDS | 40.0% | |
| ! | AGCTTTAACACCTGATCCAA+TGG | + | chr7_1:78414476-78414495 | None:intergenic | 40.0% |
| GAATTGAATTGCTACCTAGG+TGG | + | chr7_1:78414542-78414561 | None:intergenic | 40.0% | |
| !! | AGAGGATGAACGGATTACTG+TGG | + | chr7_1:78412914-78412933 | None:intergenic | 45.0% |
| ! | AGAAGACTGGTTCTCGTTAG+CGG | + | chr7_1:78412938-78412957 | None:intergenic | 45.0% |
| TAACGAGAACCAGTCTTCTC+CGG | - | chr7_1:78412939-78412958 | Msa1040920:intron | 45.0% | |
| AGTATAATCCCGGAGAAGAC+TGG | + | chr7_1:78412951-78412970 | None:intergenic | 45.0% | |
| !! | AGAAACGACGCCGTTTTCAA+CGG | + | chr7_1:78413073-78413092 | None:intergenic | 45.0% |
| GTGGTAACATTAAGTGACGG+AGG | + | chr7_1:78413294-78413313 | None:intergenic | 45.0% | |
| !!! | GACGGAGGGAGTATCTTTTA+TGG | - | chr7_1:78413536-78413555 | Msa1040920:intron | 45.0% |
| GAGCTCATCAATTGGCGTTT+GGG | + | chr7_1:78413912-78413931 | None:intergenic | 45.0% | |
| TGAGCTCATCAATTGGCGTT+TGG | + | chr7_1:78413913-78413932 | None:intergenic | 45.0% | |
| GCGTATCTGAGCTCATCAAT+TGG | + | chr7_1:78413920-78413939 | None:intergenic | 45.0% | |
| !!! | GGGGCCAAAAGTGGTTTTAA+AGG | - | chr7_1:78413984-78414003 | Msa1040920:intron | 45.0% |
| ! | TGTTGGTTGATGTTTGGGTG+TGG | - | chr7_1:78414326-78414345 | Msa1040920:intron | 45.0% |
| ! | GTTGGTTGATGTTTGGGTGT+GGG | - | chr7_1:78414327-78414346 | Msa1040920:CDS | 45.0% |
| !!! | TTGGGTGTGGGTTTTTTAGG+TGG | - | chr7_1:78414339-78414358 | Msa1040920:CDS | 45.0% |
| TATGTTGGACCTGAGTCCAT+TGG | - | chr7_1:78414457-78414476 | Msa1040920:CDS | 45.0% | |
| AGGTGTTAAAGCTGCGATCA+AGG | - | chr7_1:78414483-78414502 | Msa1040920:CDS | 45.0% | |
| CAATGTTACCTTCTCCACCT+AGG | - | chr7_1:78414525-78414544 | Msa1040920:CDS | 45.0% | |
| AATTGCTACCTAGGTGGAGA+AGG | + | chr7_1:78414536-78414555 | None:intergenic | 45.0% | |
| !! | AGAGGATGAACGGATTACTG+TGG | + | chr7_1:78412914-78412933 | None:intergenic | 45.0% |
| ! | AGAAGACTGGTTCTCGTTAG+CGG | + | chr7_1:78412938-78412957 | None:intergenic | 45.0% |
| TAACGAGAACCAGTCTTCTC+CGG | - | chr7_1:78412939-78412958 | Msa1040920:intron | 45.0% | |
| AGTATAATCCCGGAGAAGAC+TGG | + | chr7_1:78412951-78412970 | None:intergenic | 45.0% | |
| !! | AGAAACGACGCCGTTTTCAA+CGG | + | chr7_1:78413073-78413092 | None:intergenic | 45.0% |
| GTGGTAACATTAAGTGACGG+AGG | + | chr7_1:78413294-78413313 | None:intergenic | 45.0% | |
| !!! | GACGGAGGGAGTATCTTTTA+TGG | - | chr7_1:78413536-78413555 | Msa1040920:intron | 45.0% |
| GAGCTCATCAATTGGCGTTT+GGG | + | chr7_1:78413912-78413931 | None:intergenic | 45.0% | |
| TGAGCTCATCAATTGGCGTT+TGG | + | chr7_1:78413913-78413932 | None:intergenic | 45.0% | |
| GCGTATCTGAGCTCATCAAT+TGG | + | chr7_1:78413920-78413939 | None:intergenic | 45.0% | |
| !!! | GGGGCCAAAAGTGGTTTTAA+AGG | - | chr7_1:78413984-78414003 | Msa1040920:intron | 45.0% |
| ! | TGTTGGTTGATGTTTGGGTG+TGG | - | chr7_1:78414326-78414345 | Msa1040920:intron | 45.0% |
| ! | GTTGGTTGATGTTTGGGTGT+GGG | - | chr7_1:78414327-78414346 | Msa1040920:CDS | 45.0% |
| !!! | TTGGGTGTGGGTTTTTTAGG+TGG | - | chr7_1:78414339-78414358 | Msa1040920:CDS | 45.0% |
| TATGTTGGACCTGAGTCCAT+TGG | - | chr7_1:78414457-78414476 | Msa1040920:CDS | 45.0% | |
| AGGTGTTAAAGCTGCGATCA+AGG | - | chr7_1:78414483-78414502 | Msa1040920:CDS | 45.0% | |
| CAATGTTACCTTCTCCACCT+AGG | - | chr7_1:78414525-78414544 | Msa1040920:CDS | 45.0% | |
| AATTGCTACCTAGGTGGAGA+AGG | + | chr7_1:78414536-78414555 | None:intergenic | 45.0% | |
| GGAGTTAGAGTCGCCATTGA+TGG | + | chr7_1:78412781-78412800 | None:intergenic | 50.0% | |
| CGTTAGCGGTAGAGGATGAA+CGG | + | chr7_1:78412924-78412943 | None:intergenic | 50.0% | |
| AACGAGAACCAGTCTTCTCC+GGG | - | chr7_1:78412940-78412959 | Msa1040920:intron | 50.0% | |
| ! | TTCGTGGCGGAGTATAATCC+CGG | + | chr7_1:78412961-78412980 | None:intergenic | 50.0% |
| AGTGAGGTCGAATTTCGTGG+CGG | + | chr7_1:78412974-78412993 | None:intergenic | 50.0% | |
| AGCAGTGAGGTCGAATTTCG+TGG | + | chr7_1:78412977-78412996 | None:intergenic | 50.0% | |
| ! | GATCGACGTTTGAAGCAGTG+AGG | + | chr7_1:78412990-78413009 | None:intergenic | 50.0% |
| CGTCCTTACCTCATCTCTGA+CGG | - | chr7_1:78413027-78413046 | Msa1040920:CDS | 50.0% | |
| GGGAATCGAACGCGTTCTTA+AGG | - | chr7_1:78413149-78413168 | Msa1040920:CDS | 50.0% | |
| AGCAAGGGAAACAACGGTTG+AGG | - | chr7_1:78413224-78413243 | Msa1040920:intron | 50.0% | |
| AGGGTTACATTAAGGGACGG+AGG | - | chr7_1:78413521-78413540 | Msa1040920:intron | 50.0% | |
| GGGTTACATTAAGGGACGGA+GGG | - | chr7_1:78413522-78413541 | Msa1040920:intron | 50.0% | |
| ! | ACTTCTAGAGGGGCCAAAAG+TGG | - | chr7_1:78413975-78413994 | Msa1040920:intron | 50.0% |
| TGAAGGTGGTGACTGTGTTG+TGG | - | chr7_1:78414432-78414451 | Msa1040920:CDS | 50.0% | |
| ! | ACACCTGATCCAATGGACTC+AGG | + | chr7_1:78414469-78414488 | None:intergenic | 50.0% |
| !! | GCCATTGATGGTGCGTAATG+AGG | + | chr7_1:78412769-78412788 | None:intergenic | 50.0% |
| GGAGTTAGAGTCGCCATTGA+TGG | + | chr7_1:78412781-78412800 | None:intergenic | 50.0% | |
| CGTTAGCGGTAGAGGATGAA+CGG | + | chr7_1:78412924-78412943 | None:intergenic | 50.0% | |
| AACGAGAACCAGTCTTCTCC+GGG | - | chr7_1:78412940-78412959 | Msa1040920:intron | 50.0% | |
| ! | TTCGTGGCGGAGTATAATCC+CGG | + | chr7_1:78412961-78412980 | None:intergenic | 50.0% |
| AGTGAGGTCGAATTTCGTGG+CGG | + | chr7_1:78412974-78412993 | None:intergenic | 50.0% | |
| AGCAGTGAGGTCGAATTTCG+TGG | + | chr7_1:78412977-78412996 | None:intergenic | 50.0% | |
| ! | GATCGACGTTTGAAGCAGTG+AGG | + | chr7_1:78412990-78413009 | None:intergenic | 50.0% |
| CGTCCTTACCTCATCTCTGA+CGG | - | chr7_1:78413027-78413046 | Msa1040920:CDS | 50.0% | |
| GGGAATCGAACGCGTTCTTA+AGG | - | chr7_1:78413149-78413168 | Msa1040920:CDS | 50.0% | |
| AGCAAGGGAAACAACGGTTG+AGG | - | chr7_1:78413224-78413243 | Msa1040920:intron | 50.0% | |
| AGGGTTACATTAAGGGACGG+AGG | - | chr7_1:78413521-78413540 | Msa1040920:intron | 50.0% | |
| GGGTTACATTAAGGGACGGA+GGG | - | chr7_1:78413522-78413541 | Msa1040920:intron | 50.0% | |
| ! | ACTTCTAGAGGGGCCAAAAG+TGG | - | chr7_1:78413975-78413994 | Msa1040920:intron | 50.0% |
| TGAAGGTGGTGACTGTGTTG+TGG | - | chr7_1:78414432-78414451 | Msa1040920:CDS | 50.0% | |
| ! | ACACCTGATCCAATGGACTC+AGG | + | chr7_1:78414469-78414488 | None:intergenic | 50.0% |
| ! | CTGGTTCTCGTTAGCGGTAG+AGG | + | chr7_1:78412932-78412951 | None:intergenic | 55.0% |
| CCTCCGTCAGAGATGAGGTA+AGG | + | chr7_1:78413033-78413052 | None:intergenic | 55.0% | |
| CCTTACCTCATCTCTGACGG+AGG | - | chr7_1:78413030-78413049 | Msa1040920:CDS | 55.0% | |
| CGTTTCCTCCGTCAGAGATG+AGG | + | chr7_1:78413038-78413057 | None:intergenic | 55.0% | |
| GGACCTGAGTCCATTGGATC+AGG | - | chr7_1:78414463-78414482 | Msa1040920:CDS | 55.0% | |
| ! | CTGGTTCTCGTTAGCGGTAG+AGG | + | chr7_1:78412932-78412951 | None:intergenic | 55.0% |
| CCTCCGTCAGAGATGAGGTA+AGG | + | chr7_1:78413033-78413052 | None:intergenic | 55.0% | |
| CCTTACCTCATCTCTGACGG+AGG | - | chr7_1:78413030-78413049 | Msa1040920:CDS | 55.0% | |
| CGTTTCCTCCGTCAGAGATG+AGG | + | chr7_1:78413038-78413057 | None:intergenic | 55.0% | |
| GGACCTGAGTCCATTGGATC+AGG | - | chr7_1:78414463-78414482 | Msa1040920:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 78412767 | 78414805 | 78412767 | ID=Msa1040920;Name=Msa1040920 |
| chr7_1 | mRNA | 78412767 | 78414805 | 78412767 | ID=Msa1040920-mRNA-1;Parent=Msa1040920;Name=Msa1040920-mRNA-1;_AED=0.02;_eAED=0.02;_QI=17|1|1|1|0.5|0.33|3|213|216 |
| chr7_1 | exon | 78412767 | 78412897 | 78412767 | ID=Msa1040920-mRNA-1:exon:20969;Parent=Msa1040920-mRNA-1 |
| chr7_1 | exon | 78412944 | 78413214 | 78412944 | ID=Msa1040920-mRNA-1:exon:20968;Parent=Msa1040920-mRNA-1 |
| chr7_1 | exon | 78414327 | 78414805 | 78414327 | ID=Msa1040920-mRNA-1:exon:20967;Parent=Msa1040920-mRNA-1 |
| chr7_1 | five_prime_UTR | 78414789 | 78414805 | 78414789 | ID=Msa1040920-mRNA-1:five_prime_utr;Parent=Msa1040920-mRNA-1 |
| chr7_1 | CDS | 78414327 | 78414788 | 78414327 | ID=Msa1040920-mRNA-1:cds;Parent=Msa1040920-mRNA-1 |
| chr7_1 | CDS | 78413026 | 78413214 | 78413026 | ID=Msa1040920-mRNA-1:cds;Parent=Msa1040920-mRNA-1 |
| chr7_1 | three_prime_UTR | 78412944 | 78413025 | 78412944 | ID=Msa1040920-mRNA-1:three_prime_utr;Parent=Msa1040920-mRNA-1 |
| chr7_1 | three_prime_UTR | 78412767 | 78412897 | 78412767 | ID=Msa1040920-mRNA-1:three_prime_utr;Parent=Msa1040920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
