AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1041040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041040 MtrunA17_Chr7g0270051 92.086 278 8 3 1 277 1 265 0.0 511
Msa1041040 MtrunA17_Chr7g0248691 54.331 127 51 3 43 163 144 269 1.59e-36 132
Msa1041040 MtrunA17_Chr8g0379461 57.273 110 42 3 25 131 45 152 1.09e-35 128
Msa1041040 MtrunA17_Chr2g0293481 46.061 165 75 5 1 160 213 368 1.44e-35 132
Msa1041040 MtrunA17_Chr8g0348311 48.462 130 55 2 8 137 122 239 2.97e-34 126
Msa1041040 MtrunA17_Chr2g0284321 51.200 125 55 4 24 146 9 129 4.47e-33 120
Msa1041040 MtrunA17_Chr2g0319961 54.032 124 47 5 2 120 31 149 1.70e-31 117
Msa1041040 MtrunA17_Chr1g0202461 59.524 84 31 1 40 120 248 331 7.72e-30 115
Msa1041040 MtrunA17_Chr5g0401821 54.945 91 37 1 20 110 170 256 5.06e-28 108
Msa1041040 MtrunA17_Chr8g0387501 61.333 75 26 1 49 120 125 199 8.79e-28 108
Msa1041040 MtrunA17_Chr4g0053281 55.814 86 34 1 25 110 242 323 1.43e-26 106
Msa1041040 MtrunA17_Chr1g0147881 51.136 88 38 1 23 110 237 319 4.57e-26 104
Msa1041040 MtrunA17_Chr4g0071521 55.056 89 36 2 22 110 218 302 1.03e-25 103
Msa1041040 MtrunA17_Chr2g0289181 47.619 84 44 0 43 126 4 87 3.88e-23 94.7
Msa1041040 MtrunA17_Chr1g0184691 60.000 60 24 0 51 110 291 350 2.96e-22 94.7
Msa1041040 MtrunA17_Chr7g0228941 40.404 99 49 2 13 110 20 109 1.50e-21 87.4
Msa1041040 MtrunA17_Chr3g0139021 43.023 86 40 1 25 110 295 371 4.31e-20 89.0
Msa1041040 MtrunA17_Chr3g0099641 39.200 125 61 4 3 124 213 325 5.97e-20 89.0
Msa1041040 MtrunA17_Chr4g0051881 60.317 63 24 1 54 116 179 240 1.72e-19 86.7
Msa1041040 MtrunA17_Chr7g0270831 50.649 77 35 1 51 124 214 290 1.83e-19 87.4
Msa1041040 MtrunA17_Chr2g0288871 46.429 84 39 1 30 113 288 365 2.28e-19 87.8
Msa1041040 MtrunA17_Chr1g0194481 52.000 75 34 2 54 128 159 231 3.99e-19 85.5
Msa1041040 MtrunA17_Chr4g0051181 55.556 63 28 0 53 115 243 305 4.06e-19 86.7
Msa1041040 MtrunA17_Chr4g0075201 55.556 63 28 0 53 115 267 329 9.69e-19 85.5
Msa1041040 MtrunA17_Chr5g0418191 54.412 68 30 1 54 121 321 387 1.11e-18 85.1
Msa1041040 MtrunA17_Chr5g0418191 47.826 69 32 3 54 120 152 218 1.19e-11 64.7
Msa1041040 MtrunA17_Chr4g0042831 46.512 86 44 2 54 139 279 362 1.61e-18 84.3
Msa1041040 MtrunA17_Chr4g0042831 38.372 86 45 3 42 125 139 218 1.24e-11 64.3
Msa1041040 MtrunA17_Chr7g0270191 40.777 103 56 3 54 152 146 247 1.81e-18 83.2
Msa1041040 MtrunA17_Chr2g0294231 50.000 74 35 2 54 127 204 275 2.32e-18 84.0
Msa1041040 MtrunA17_Chr7g0218081 40.594 101 57 2 54 152 411 510 3.20e-18 84.3
Msa1041040 MtrunA17_Chr7g0218081 51.667 60 27 2 54 113 229 286 5.80e-12 65.5
Msa1041040 MtrunA17_Chr7g0216891 55.932 59 26 0 53 111 219 277 3.58e-18 84.0
Msa1041040 MtrunA17_Chr4g0068541 29.299 157 101 2 54 201 209 364 3.69e-18 83.6
Msa1041040 MtrunA17_Chr8g0347251 46.296 108 51 4 3 108 91 193 6.44e-18 82.4
Msa1041040 MtrunA17_Chr2g0322391 38.384 99 55 1 17 115 319 411 9.05e-18 82.8
Msa1041040 MtrunA17_Chr7g0238921 57.576 66 27 1 45 110 116 180 4.60e-17 79.7
Msa1041040 MtrunA17_Chr3g0079691 53.623 69 31 1 54 122 496 563 5.17e-17 80.9
Msa1041040 MtrunA17_Chr3g0079691 53.846 65 27 3 50 113 276 338 7.02e-14 71.6
Msa1041040 MtrunA17_Chr4g0025061 47.761 67 35 0 49 115 356 422 5.77e-17 80.5
Msa1041040 MtrunA17_Chr5g0443131 55.556 63 27 1 54 116 158 219 7.73e-17 79.0
Msa1041040 MtrunA17_Chr4g0060271 54.098 61 28 0 53 113 255 315 1.42e-16 79.3
Msa1041040 MtrunA17_Chr4g0025051 49.231 65 33 0 49 113 331 395 1.80e-16 79.0
Msa1041040 MtrunA17_Chr1g0150801 54.237 59 26 1 54 112 103 160 2.33e-16 74.7
Msa1041040 MtrunA17_Chr4g0001361 46.269 67 36 0 54 120 163 229 2.48e-16 77.4
Msa1041040 MtrunA17_Chr5g0447701 39.130 115 57 3 13 115 200 313 3.08e-16 77.8
Msa1041040 MtrunA17_Chr5g0445311 53.030 66 30 1 54 119 365 429 3.31e-16 78.2
Msa1041040 MtrunA17_Chr5g0445311 51.667 60 27 2 54 113 201 258 2.33e-12 66.6
Msa1041040 MtrunA17_Chr3g0101131 39.130 115 65 3 9 119 367 480 3.73e-16 78.2
Msa1041040 MtrunA17_Chr3g0101131 50.000 60 28 2 54 113 244 301 1.30e-11 64.7
Msa1041040 MtrunA17_Chr2g0302391 49.333 75 32 1 54 122 212 286 4.93e-16 77.4
Msa1041040 MtrunA17_Chr7g0243891 48.571 70 35 1 54 123 375 443 7.82e-16 77.0
Msa1041040 MtrunA17_Chr7g0243891 55.000 60 25 2 54 113 217 274 2.26e-13 69.7
Msa1041040 MtrunA17_Chr7g0224801 50.000 58 28 1 54 111 94 150 1.20e-15 73.2
Msa1041040 MtrunA17_Chr7g0275531 41.026 117 60 4 3 113 71 184 1.41e-15 75.5
Msa1041040 MtrunA17_Chr2g0333851 47.541 61 32 0 54 114 170 230 1.44e-15 75.5
Msa1041040 MtrunA17_Chr4g0074001 44.444 72 39 1 43 114 349 419 1.86e-15 75.9
Msa1041040 MtrunA17_Chr5g0418781 42.574 101 55 3 10 110 83 180 2.30e-15 74.3
Msa1041040 MtrunA17_Chr3g0136961 32.240 183 103 6 39 206 117 293 2.36e-15 74.3
Msa1041040 MtrunA17_Chr4g0024391 43.023 86 43 1 30 115 212 291 2.72e-15 75.5
Msa1041040 MtrunA17_Chr7g0249301 50.000 62 30 1 54 115 293 353 3.11e-15 75.1
Msa1041040 MtrunA17_Chr7g0249301 48.387 62 30 2 54 115 63 122 3.83e-13 68.9
Msa1041040 MtrunA17_Chr7g0263531 47.887 71 33 2 53 123 361 427 3.23e-15 75.1
Msa1041040 MtrunA17_Chr7g0263531 53.333 60 26 2 54 113 190 247 4.89e-13 68.6
Msa1041040 MtrunA17_Chr7g0249311 46.053 76 35 2 54 124 393 467 5.56e-15 74.7
Msa1041040 MtrunA17_Chr7g0249311 53.333 60 26 2 54 113 180 237 6.93e-13 68.6
Msa1041040 MtrunA17_Chr4g0004911 48.387 62 31 1 54 115 337 397 8.09e-15 73.9
Msa1041040 MtrunA17_Chr4g0004911 53.333 60 27 1 54 113 185 243 1.16e-13 70.5
Msa1041040 MtrunA17_Chr8g0387981 34.545 165 80 5 24 184 106 246 1.07e-14 73.2
Msa1041040 MtrunA17_Chr3g0126391 53.226 62 27 1 49 108 129 190 1.27e-14 72.8
Msa1041040 MtrunA17_Chr5g0432161 49.254 67 33 1 54 120 422 487 1.74e-14 73.2
Msa1041040 MtrunA17_Chr5g0432161 53.333 60 26 2 54 113 245 302 1.38e-12 67.4
Msa1041040 MtrunA17_Chr3g0129321 50.000 60 29 1 54 113 119 177 2.28e-14 70.1
Msa1041040 MtrunA17_Chr8g0383251 50.000 60 29 1 54 113 109 167 2.51e-14 69.7
Msa1041040 MtrunA17_Chr6g0485431 46.250 80 35 3 35 113 142 214 3.10e-14 72.0
Msa1041040 MtrunA17_Chr7g0248721 55.172 58 24 2 54 111 142 197 3.52e-14 70.1
Msa1041040 MtrunA17_Chr3g0106491 45.714 70 37 1 54 123 366 434 4.58e-14 72.0
Msa1041040 MtrunA17_Chr3g0106491 51.613 62 28 2 54 115 199 258 2.80e-13 69.7
Msa1041040 MtrunA17_Chr1g0150281 47.368 57 30 0 54 110 141 197 1.26e-13 69.3
Msa1041040 MtrunA17_Chr1g0150271 46.667 60 32 0 54 113 102 161 1.48e-13 68.9
Msa1041040 MtrunA17_Chr8g0335811 54.386 57 25 1 54 110 155 210 2.80e-13 67.8
Msa1041040 MtrunA17_Chr1g0188941 46.032 63 33 1 54 116 52 113 6.00e-13 63.9
Msa1041040 MtrunA17_Chr1g0189391 53.448 58 25 2 54 110 98 154 1.38e-12 67.0
Msa1041040 MtrunA17_Chr8g0386241 44.828 58 31 1 54 111 104 160 4.86e-12 63.2
Msa1041040 MtrunA17_Chr3g0129361 45.588 68 36 1 54 121 145 211 8.76e-12 63.2
Msa1041040 MtrunA17_Chr8g0383351 45.588 68 36 1 54 121 161 227 1.54e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041040 AT2G34830.1 54.783 115 51 1 1 114 162 276 1.13e-35 132
Msa1041040 AT2G34830.2 54.783 115 51 1 1 114 171 285 1.15e-35 132
Msa1041040 AT4G01250.1 50.000 130 48 2 24 145 108 228 6.02e-35 127
Msa1041040 AT1G29280.1 60.396 101 34 3 25 122 44 141 9.61e-34 124
Msa1041040 AT3G58710.2 54.198 131 43 4 10 126 14 141 1.03e-33 124
Msa1041040 AT1G30650.1 60.417 96 37 1 19 113 182 277 2.05e-33 126
Msa1041040 AT3G58710.1 60.000 105 36 3 25 126 41 142 7.57e-33 121
Msa1041040 AT5G52830.1 43.871 155 70 3 24 169 144 290 6.86e-32 120
Msa1041040 AT4G23550.1 52.336 107 48 1 43 146 130 236 8.90e-28 109
Msa1041040 AT2G23320.1 53.333 90 36 2 22 110 213 297 4.44e-27 107
Msa1041040 AT5G45050.2 56.044 91 32 1 24 114 1131 1213 2.54e-26 108
Msa1041040 AT5G45050.1 56.044 91 32 1 24 114 1159 1241 2.64e-26 108
Msa1041040 AT5G45050.4 56.044 91 32 1 24 114 1020 1102 2.99e-26 108
Msa1041040 AT4G24240.1 56.180 89 35 2 22 110 254 338 3.05e-26 105
Msa1041040 AT2G30590.1 52.222 90 39 2 22 111 286 371 1.22e-25 104
Msa1041040 AT4G31550.2 54.651 86 35 2 25 110 221 302 1.65e-24 100
Msa1041040 AT5G28650.1 48.936 94 42 2 18 110 231 319 1.90e-24 100
Msa1041040 AT2G24570.1 56.000 75 31 1 36 110 228 300 2.74e-24 100
Msa1041040 AT4G31550.1 56.000 75 31 1 36 110 231 303 3.06e-24 100
Msa1041040 AT3G04670.1 47.872 94 43 2 18 110 231 319 5.36e-24 99.4
Msa1041040 AT5G45260.1 60.274 73 24 2 53 120 1208 1280 1.95e-22 97.4
Msa1041040 AT4G04450.2 39.655 116 64 3 28 137 170 285 4.27e-20 89.7
Msa1041040 AT4G04450.1 39.655 116 64 3 28 137 264 379 4.87e-20 90.1
Msa1041040 AT1G29860.1 55.882 68 29 1 54 121 137 203 5.81e-20 87.4
Msa1041040 AT5G46350.1 54.321 81 32 2 54 130 184 263 6.07e-20 88.2
Msa1041040 AT1G68150.1 48.000 75 39 0 53 127 235 309 1.38e-19 87.8
Msa1041040 AT4G18170.1 48.485 99 48 2 20 116 137 234 1.44e-19 87.0
Msa1041040 AT4G22070.4 46.429 84 39 1 30 113 280 357 1.75e-19 88.2
Msa1041040 AT4G22070.3 46.429 84 39 1 30 113 280 357 1.75e-19 88.2
Msa1041040 AT4G22070.2 46.429 84 39 1 30 113 280 357 1.75e-19 88.2
Msa1041040 AT4G22070.1 46.429 84 39 1 30 113 280 357 1.75e-19 88.2
Msa1041040 AT2G04880.2 54.930 71 31 1 53 123 283 352 2.41e-19 87.8
Msa1041040 AT2G04880.2 48.387 62 30 2 54 115 112 171 4.21e-12 66.2
Msa1041040 AT2G04880.1 53.425 73 33 1 51 123 305 376 2.75e-19 87.8
Msa1041040 AT2G04880.1 48.387 62 30 2 54 115 112 171 4.59e-12 66.2
Msa1041040 AT1G62300.1 57.377 61 26 0 53 113 312 372 4.55e-19 87.0
Msa1041040 AT5G49520.1 60.000 60 23 1 54 113 222 280 6.83e-19 85.9
Msa1041040 AT1G18860.1 49.412 85 37 2 29 113 221 299 7.30e-19 86.7
Msa1041040 AT4G26640.5 34.228 149 76 3 12 151 176 311 1.98e-18 84.7
Msa1041040 AT4G26640.5 44.595 74 39 2 51 124 33 104 6.28e-13 68.6
Msa1041040 AT4G26640.6 34.228 149 76 3 12 151 176 311 1.98e-18 84.7
Msa1041040 AT4G26640.6 44.595 74 39 2 51 124 33 104 6.28e-13 68.6
Msa1041040 AT4G26640.4 34.228 149 76 3 12 151 176 311 1.98e-18 84.7
Msa1041040 AT4G26640.4 44.595 74 39 2 51 124 33 104 6.28e-13 68.6
Msa1041040 AT4G26640.3 34.228 149 76 3 12 151 176 311 1.98e-18 84.7
Msa1041040 AT4G26640.3 44.595 74 39 2 51 124 33 104 6.28e-13 68.6
Msa1041040 AT4G26640.1 34.228 149 76 3 12 151 280 415 3.78e-18 84.3
Msa1041040 AT4G26640.1 44.595 74 39 2 51 124 137 208 1.04e-12 68.2
Msa1041040 AT4G26640.7 34.228 149 76 3 12 151 312 447 4.19e-18 84.3
Msa1041040 AT4G26640.7 44.595 74 39 2 51 124 169 240 1.29e-12 67.8
Msa1041040 AT4G26640.2 34.228 149 76 3 12 151 352 487 4.55e-18 84.3
Msa1041040 AT4G26640.2 44.595 74 39 2 51 124 209 280 1.32e-12 68.2
Msa1041040 AT2G25000.2 50.000 70 35 0 54 123 104 173 8.86e-18 80.5
Msa1041040 AT2G25000.4 50.000 70 35 0 54 123 104 173 8.86e-18 80.5
Msa1041040 AT4G01720.1 45.122 82 39 1 32 113 224 299 1.29e-17 82.8
Msa1041040 AT2G25000.3 50.000 70 35 0 54 123 126 195 1.37e-17 80.5
Msa1041040 AT5G15130.1 49.333 75 35 1 53 124 227 301 1.44e-17 82.8
Msa1041040 AT2G25000.1 50.000 70 35 0 54 123 147 216 1.80e-17 80.5
Msa1041040 AT5G15130.2 49.333 75 35 1 53 124 185 259 2.10e-17 82.0
Msa1041040 AT3G62340.1 40.000 120 64 3 54 169 119 234 2.25e-17 80.5
Msa1041040 AT4G31800.2 53.226 62 29 0 54 115 112 173 2.30e-17 79.7
Msa1041040 AT4G31800.1 53.226 62 29 0 54 115 177 238 2.54e-17 80.5
Msa1041040 AT1G13960.2 54.386 57 25 1 54 110 257 312 2.58e-17 81.3
Msa1041040 AT1G13960.2 53.333 60 26 2 54 113 77 134 4.96e-13 68.9
Msa1041040 AT2G21900.1 33.019 106 68 2 11 116 69 171 2.66e-17 78.6
Msa1041040 AT2G03340.1 51.515 66 31 1 54 119 416 480 2.76e-17 81.6
Msa1041040 AT2G03340.1 45.333 75 38 3 37 110 233 305 1.89e-12 67.4
Msa1041040 AT1G13960.1 54.386 57 25 1 54 110 410 465 4.81e-17 81.3
Msa1041040 AT1G13960.1 53.333 60 26 2 54 113 230 287 7.51e-13 68.6
Msa1041040 AT1G80840.1 47.692 65 34 0 54 118 147 211 1.37e-16 78.6
Msa1041040 AT2G30250.1 54.545 66 29 1 54 119 329 393 1.91e-16 79.0
Msa1041040 AT1G55600.1 48.438 64 32 1 52 115 306 368 2.06e-16 79.3
Msa1041040 AT4G23810.1 48.276 87 40 2 24 108 132 215 2.54e-16 78.2
Msa1041040 AT1G69310.4 44.565 92 47 4 19 110 116 203 3.70e-16 77.0
Msa1041040 AT1G69310.2 44.565 92 47 4 19 110 116 203 3.70e-16 77.0
Msa1041040 AT1G69310.1 44.565 92 47 4 19 110 116 203 3.70e-16 77.0
Msa1041040 AT3G01080.1 53.968 63 28 1 51 113 304 365 5.27e-16 77.8
Msa1041040 AT3G01080.1 53.333 60 26 2 54 113 168 225 9.94e-13 68.2
Msa1041040 AT2G38470.1 51.389 72 33 2 54 124 363 433 5.29e-16 78.2
Msa1041040 AT2G38470.1 51.667 60 27 2 54 113 185 242 5.37e-12 66.2
Msa1041040 AT3G01080.2 55.000 60 26 1 54 113 345 403 6.93e-16 77.4
Msa1041040 AT3G01080.2 53.333 60 26 2 54 113 206 263 1.21e-12 67.8
Msa1041040 AT4G30935.1 44.444 72 39 1 43 114 321 391 6.94e-16 77.4
Msa1041040 AT5G13080.1 50.000 58 28 1 54 111 68 124 1.28e-15 72.8
Msa1041040 AT2G46400.1 36.806 144 77 4 14 145 65 206 1.63e-15 75.5
Msa1041040 AT5G56270.1 53.226 62 28 1 54 115 488 548 1.78e-15 76.6
Msa1041040 AT5G56270.1 34.646 127 80 3 50 175 269 393 1.56e-13 70.9
Msa1041040 AT4G11070.2 41.509 106 57 2 5 108 64 166 1.97e-15 75.1
Msa1041040 AT5G26170.1 54.386 57 25 1 54 110 114 169 2.42e-15 72.8
Msa1041040 AT4G11070.1 41.509 106 57 2 5 108 96 198 2.62e-15 75.1
Msa1041040 AT2G47260.1 53.333 60 27 1 54 113 175 233 2.83e-15 75.1
Msa1041040 AT2G46130.1 48.611 72 36 1 54 125 31 101 3.62e-15 70.5
Msa1041040 AT5G43290.1 46.429 84 41 3 29 110 89 170 8.59e-15 73.2
Msa1041040 AT1G64000.1 50.000 58 28 1 54 111 115 171 1.41e-14 70.9
Msa1041040 AT4G26440.1 50.000 66 32 1 54 119 373 437 1.53e-14 73.9
Msa1041040 AT4G26440.1 47.297 74 32 3 54 122 179 250 4.41e-12 66.2
Msa1041040 AT5G41570.1 50.000 58 28 1 54 111 99 155 1.54e-14 70.5
Msa1041040 AT5G24110.1 42.222 90 43 3 23 108 86 170 4.15e-14 71.6
Msa1041040 AT3G01970.1 47.368 57 29 1 54 110 66 121 6.02e-14 68.2
Msa1041040 AT2G37260.1 54.386 57 25 1 54 110 350 405 6.87e-14 71.6
Msa1041040 AT2G37260.1 45.122 82 38 3 54 130 166 245 3.28e-11 63.5
Msa1041040 AT2G37260.3 54.386 57 25 1 54 110 270 325 7.39e-14 71.2
Msa1041040 AT2G37260.3 45.122 82 38 3 54 130 86 165 3.69e-11 63.2
Msa1041040 AT2G37260.2 54.386 57 25 1 54 110 268 323 7.74e-14 70.9
Msa1041040 AT2G37260.2 45.122 82 38 3 54 130 84 163 3.77e-11 63.2
Msa1041040 AT2G44745.1 49.315 73 28 2 54 118 146 217 8.72e-14 69.3
Msa1041040 AT5G64810.1 50.877 57 27 1 54 110 111 166 1.32e-13 68.2
Msa1041040 AT5G07100.2 50.820 61 29 1 54 114 142 201 1.55e-13 68.6
Msa1041040 AT5G07100.2 46.667 75 37 2 54 126 25 98 6.44e-13 67.0
Msa1041040 AT5G07100.4 50.820 61 29 1 54 114 142 201 1.55e-13 68.6
Msa1041040 AT5G07100.4 46.667 75 37 2 54 126 25 98 6.44e-13 67.0
Msa1041040 AT5G07100.5 50.820 61 29 1 54 114 142 201 1.55e-13 68.6
Msa1041040 AT5G07100.5 46.667 75 37 2 54 126 25 98 6.44e-13 67.0
Msa1041040 AT5G07100.3 50.820 61 29 1 54 114 142 201 1.55e-13 68.6
Msa1041040 AT5G07100.3 46.667 75 37 2 54 126 25 98 6.44e-13 67.0
Msa1041040 AT5G07100.1 50.820 61 29 1 54 114 235 294 3.72e-13 68.9
Msa1041040 AT5G07100.1 33.898 118 72 3 54 171 118 229 1.53e-12 67.0
Msa1041040 AT1G69810.1 45.455 66 35 1 53 117 203 268 8.72e-13 68.2
Msa1041040 AT3G01080.3 53.333 60 26 2 54 113 206 263 1.49e-12 67.0
Msa1041040 AT1G69810.2 45.455 66 35 1 53 117 145 210 1.63e-12 67.0
Msa1041040 AT2G40740.3 43.373 83 45 1 52 132 181 263 2.37e-12 66.2
Msa1041040 AT2G40740.1 43.373 83 45 1 52 132 172 254 2.68e-12 66.2
Msa1041040 AT4G39410.1 46.479 71 32 2 54 119 224 293 5.49e-12 65.5
Msa1041040 AT4G12020.6 42.222 90 37 4 42 123 462 544 1.83e-11 65.1
Msa1041040 AT4G12020.8 42.222 90 37 4 42 123 462 544 1.83e-11 65.1
Msa1041040 AT4G12020.7 42.222 90 37 4 42 123 462 544 1.97e-11 64.7
Msa1041040 AT4G12020.10 42.222 90 37 4 42 123 462 544 1.98e-11 64.7
Msa1041040 AT4G12020.3 42.222 90 37 4 42 123 462 544 2.11e-11 64.7
Msa1041040 AT4G12020.1 42.222 90 37 4 42 123 462 544 2.14e-11 64.7
Msa1041040 AT4G12020.9 42.222 90 37 4 42 123 462 544 2.14e-11 64.7
Msa1041040 AT1G69310.3 41.304 92 46 5 19 110 116 199 2.31e-11 63.2
Msa1041040 AT4G12020.4 42.222 90 37 4 42 123 462 544 2.36e-11 64.7
Msa1041040 AT4G12020.2 42.222 90 37 4 42 123 462 544 2.38e-11 64.7
Msa1041040 AT4G12020.5 42.222 90 37 4 42 123 395 477 2.40e-11 64.7
Msa1041040 AT4G12020.11 42.222 90 37 4 42 123 462 544 2.46e-11 64.3
Msa1041040 AT3G56400.1 28.205 156 97 4 54 204 121 266 6.95e-11 62.0

Find 59 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTATCTGTTTCTGTTCT+TGG 0.057409 7_1:+78551522 None:intergenic
AATCTATCTGTTTCTGTTCT+TGG 0.106628 7_1:+78551558 None:intergenic
GCAAGAAATCATTGAATTTA+AGG 0.187036 7_1:-78553422 Msa1041040:five_prime_UTR
ATCTTTGGTTGTTTCGGTTT+CGG 0.251832 7_1:+78551607 None:intergenic
CAAAATAGATCTTCTCTTAG+AGG 0.264483 7_1:-78551345 Msa1041040:CDS
TTCTTAGATACTTGAGATTC+TGG 0.282785 7_1:+78553340 None:intergenic
AGATGTTTCTGACTCAAGTT+TGG 0.285896 7_1:+78553375 None:intergenic
TTACTTTGAAAGGATCTTCT+TGG 0.303191 7_1:+78551390 None:intergenic
GAGGAGAGGGCTGTGGGATC+TGG 0.309355 7_1:+78551665 None:intergenic
AGATCCTTTCAAAGTAAATA+TGG 0.318455 7_1:-78551384 Msa1041040:CDS
TGGGAGATCTTTGGTTGTTT+CGG 0.331416 7_1:+78551601 None:intergenic
AGAAGTAACTGGGAGATCTT+TGG 0.334573 7_1:+78551592 None:intergenic
ACAGAAACAGATAGATTCTA+AGG 0.337204 7_1:-78551552 Msa1041040:CDS
AAGAATGCACACCTTGGATA+TGG 0.343407 7_1:+78553053 None:intergenic
GTTTCGGTTTCGGATTCTTT+TGG 0.357685 7_1:+78551617 None:intergenic
GGTGGAGGAGGAGAGGGCTG+TGG 0.362115 7_1:+78551658 None:intergenic
AGATCTCCCAGTTACTTCTA+AGG 0.363955 7_1:-78551588 Msa1041040:CDS
GATGTTTCTGACTCAAGTTT+GGG 0.377930 7_1:+78553376 None:intergenic
GGAGAATGAATAATAGATAA+TGG 0.395344 7_1:+78553545 None:intergenic
AGCTAAATTTGTGGTGGAGG+AGG 0.406354 7_1:+78551646 None:intergenic
GGATATGGAGAGCCTTTGAT+TGG 0.415352 7_1:+78553068 None:intergenic
ATCAATCAAGAAGGGGCAAC+AGG 0.418051 7_1:+78551179 None:intergenic
TTGTGCATGTCTCAGGAAAA+TGG 0.421017 7_1:-78553195 Msa1041040:intron
AAATAATTAATAGAGTAGCT+AGG 0.425625 7_1:+78553513 None:intergenic
CAGGAAAATGGTTGAGAAAA+CGG 0.425854 7_1:-78553183 Msa1041040:CDS
AATAATTAATAGAGTAGCTA+GGG 0.428437 7_1:+78553514 None:intergenic
CATTGAATTTAAGGTGGCTA+TGG 0.444576 7_1:-78553413 Msa1041040:exon
AAATCTACAGGGGATATTAT+AGG 0.447185 7_1:-78551787 Msa1041040:intron
GTGGAGGAGGAGAGGGCTGT+GGG 0.474492 7_1:+78551659 None:intergenic
AGAGTAGCTAGGGAGGGAGA+AGG 0.483905 7_1:+78553524 None:intergenic
AACACTTGAATCAATCAAGA+AGG 0.485790 7_1:+78551170 None:intergenic
AATTAATAGAGTAGCTAGGG+AGG 0.493206 7_1:+78553517 None:intergenic
AATCTCAAGTATCTAAGAAA+CGG 0.515113 7_1:-78553336 Msa1041040:intron
TTGAGCTAAATTTGTGGTGG+AGG 0.521910 7_1:+78551643 None:intergenic
GTTAGCAAGGTGAAGAATGA+AGG 0.526261 7_1:-78553134 Msa1041040:CDS
TGGTCGTTGAGCTAAATTTG+TGG 0.534592 7_1:+78551637 None:intergenic
ACGGTTGTGACTGTGAGGAT+TGG 0.535468 7_1:-78553164 Msa1041040:CDS
TTATAGGTGCAGCACATGCA+AGG 0.538816 7_1:-78551771 Msa1041040:CDS
ATTTGTGGTGGAGGAGGAGA+GGG 0.545438 7_1:+78551652 None:intergenic
ACACTTGAATCAATCAAGAA+GGG 0.556191 7_1:+78551171 None:intergenic
GATTGGAGAGAATGTTAGCA+AGG 0.558707 7_1:-78553147 Msa1041040:CDS
TTTCTTCCTTAGAAGTAACT+GGG 0.572607 7_1:+78551582 None:intergenic
AGAACAGAAACAGATAGAAG+AGG 0.574832 7_1:-78551519 Msa1041040:CDS
ATTAATAGAGTAGCTAGGGA+GGG 0.580410 7_1:+78553518 None:intergenic
AGAGGGCTGTGGGATCTGGA+TGG 0.593338 7_1:+78551669 None:intergenic
ATGGTTATGTGTTGAAGTAT+AGG 0.596238 7_1:+78551688 None:intergenic
AATTTGTGGTGGAGGAGGAG+AGG 0.601207 7_1:+78551651 None:intergenic
AGAAATCATTGAATTTAAGG+TGG 0.603614 7_1:-78553419 Msa1041040:five_prime_UTR
TATAGGTGCAGCACATGCAA+GGG 0.614000 7_1:-78551770 Msa1041040:CDS
ATGTTTCTGACTCAAGTTTG+GGG 0.614751 7_1:+78553377 None:intergenic
TCAAAGGCTCTCCATATCCA+AGG 0.621296 7_1:-78553064 Msa1041040:intron
ATGTCCTCTGAGCAGTGTGT+TGG 0.622572 7_1:+78551422 None:intergenic
TCGTTGAGCTAAATTTGTGG+TGG 0.624880 7_1:+78551640 None:intergenic
TGCAAAATAGATGAAGACAT+AGG 0.628453 7_1:+78551236 None:intergenic
CACTTGAATCAATCAAGAAG+GGG 0.629385 7_1:+78551172 None:intergenic
TGTTTCTGACTCAAGTTTGG+GGG 0.636435 7_1:+78553378 None:intergenic
TTTAACTGTGCATAGCAGAG+TGG 0.661783 7_1:+78551317 None:intergenic
ATCTCCAACACACTGCTCAG+AGG 0.702439 7_1:-78551426 Msa1041040:CDS
AGAAAACGGTTGTGACTGTG+AGG 0.708929 7_1:-78553169 Msa1041040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAATTTTCTAGTTTT+TGG - chr7_1:78551399-78551418 Msa1041040:CDS 10.0%
!!! GATTTTGTTTATTTTTCTTT+TGG + chr7_1:78552486-78552505 None:intergenic 15.0%
!!! TCATTTTCTCAAATTAATAT+TGG - chr7_1:78552771-78552790 Msa1041040:intron 15.0%
!! AAAAATGTATTGTTCATATA+TGG - chr7_1:78553547-78553566 Msa1041040:five_prime_UTR 15.0%
!! AATAATTAATAGAGTAGCTA+GGG + chr7_1:78551149-78551168 None:intergenic 20.0%
!! AAATAATTAATAGAGTAGCT+AGG + chr7_1:78551150-78551169 None:intergenic 20.0%
!! CATTAATTGAATCACATATA+TGG - chr7_1:78551663-78551682 Msa1041040:CDS 20.0%
!!! TTTATTTTTCTTTTGGTGTA+TGG + chr7_1:78552479-78552498 None:intergenic 20.0%
!! AATATCATAAAAACTTGAGT+TGG + chr7_1:78552715-78552734 None:intergenic 20.0%
!!! TTTTCCATATTTACTTTGAA+AGG + chr7_1:78553283-78553302 None:intergenic 20.0%
! GGAGAATGAATAATAGATAA+TGG + chr7_1:78551118-78551137 None:intergenic 25.0%
!!! CTGAGATTTTTAGATTTAAG+AGG + chr7_1:78551203-78551222 None:intergenic 25.0%
! GCAAGAAATCATTGAATTTA+AGG - chr7_1:78551238-78551257 Msa1041040:CDS 25.0%
! AGAAATCATTGAATTTAAGG+TGG - chr7_1:78551241-78551260 Msa1041040:CDS 25.0%
! AATCTCAAGTATCTAAGAAA+CGG - chr7_1:78551324-78551343 Msa1041040:CDS 25.0%
! ATGATGATTATCATATCTAG+TGG + chr7_1:78551634-78551653 None:intergenic 25.0%
! TGTAACTAAAAAGAGATATG+AGG + chr7_1:78551907-78551926 None:intergenic 25.0%
! TATATTCTGACAGAATCAAT+AGG - chr7_1:78551941-78551960 Msa1041040:intron 25.0%
! ATATTCTGACAGAATCAATA+GGG - chr7_1:78551942-78551961 Msa1041040:intron 25.0%
! CTGTTACAACAGATAAAATA+AGG - chr7_1:78552371-78552390 Msa1041040:intron 25.0%
!!! ACTAGGCTGTAAATATTTTT+TGG - chr7_1:78552578-78552597 Msa1041040:intron 25.0%
!! TTTTTGAATATAACCACATG+TGG + chr7_1:78552749-78552768 None:intergenic 25.0%
! AACATTAAACAAACTGCAAT+AGG + chr7_1:78552848-78552867 None:intergenic 25.0%
!! TATTGCAGTTTGTTTAATGT+TGG - chr7_1:78552847-78552866 Msa1041040:intron 25.0%
! AGATCCTTTCAAAGTAAATA+TGG - chr7_1:78553276-78553295 Msa1041040:intron 25.0%
TTCTTAGATACTTGAGATTC+TGG + chr7_1:78551323-78551342 None:intergenic 30.0%
! GAACATAGAGTTCTGATATT+TGG - chr7_1:78551360-78551379 Msa1041040:CDS 30.0%
! TAGAGTTCTGATATTTGGTT+TGG - chr7_1:78551365-78551384 Msa1041040:CDS 30.0%
TATGGACAAAAACCAATCAA+AGG - chr7_1:78551580-78551599 Msa1041040:CDS 30.0%
TATTCTGACAGAATCAATAG+GGG - chr7_1:78551943-78551962 Msa1041040:intron 30.0%
GTCACATTAAGAAACTTCTT+TGG + chr7_1:78552025-78552044 None:intergenic 30.0%
ACACAATACTAATACAAGCT+TGG - chr7_1:78552079-78552098 Msa1041040:intron 30.0%
TTAAGCCATGTCTTGATATA+AGG - chr7_1:78552157-78552176 Msa1041040:intron 30.0%
ATTGTCCTTATATCAAGACA+TGG + chr7_1:78552165-78552184 None:intergenic 30.0%
GGACAATTACTCATAGAAAT+TGG - chr7_1:78552178-78552197 Msa1041040:intron 30.0%
!!! CTTAGAGATGTTTTAAGACA+GGG - chr7_1:78552202-78552221 Msa1041040:intron 30.0%
! CTCATTCATACAATGTGTTT+TGG - chr7_1:78552270-78552289 Msa1041040:intron 30.0%
!!! TCATACAATGTGTTTTGGAA+AGG - chr7_1:78552275-78552294 Msa1041040:intron 30.0%
!!! CATACAATGTGTTTTGGAAA+GGG - chr7_1:78552276-78552295 Msa1041040:intron 30.0%
!!! ATACAATGTGTTTTGGAAAG+GGG - chr7_1:78552277-78552296 Msa1041040:intron 30.0%
!!! TATTGCTGTTTCGGTATTTT+GGG + chr7_1:78552512-78552531 None:intergenic 30.0%
!!! AGGCTGTAAATATTTTTTGG+AGG - chr7_1:78552581-78552600 Msa1041040:intron 30.0%
ACATGCAAGATCTTAAAACA+GGG + chr7_1:78552663-78552682 None:intergenic 30.0%
TACATGCAAGATCTTAAAAC+AGG + chr7_1:78552664-78552683 None:intergenic 30.0%
! TTTTGTATAAGAACCACATG+TGG - chr7_1:78552733-78552752 Msa1041040:intron 30.0%
TAATGTTGGTACAAATCTAC+AGG - chr7_1:78552861-78552880 Msa1041040:intron 30.0%
AATGTTGGTACAAATCTACA+GGG - chr7_1:78552862-78552881 Msa1041040:intron 30.0%
AAATCTACAGGGGATATTAT+AGG - chr7_1:78552873-78552892 Msa1041040:intron 30.0%
ATGGTTATGTGTTGAAGTAT+AGG + chr7_1:78552975-78552994 None:intergenic 30.0%
TTTCTTCCTTAGAAGTAACT+GGG + chr7_1:78553081-78553100 None:intergenic 30.0%
! TTTTCTTCCTTAGAAGTAAC+TGG + chr7_1:78553082-78553101 None:intergenic 30.0%
!! AATCTATCTGTTTCTGTTCT+TGG + chr7_1:78553105-78553124 None:intergenic 30.0%
ACAGAAACAGATAGATTCTA+AGG - chr7_1:78553108-78553127 Msa1041040:CDS 30.0%
! TTACTTTGAAAGGATCTTCT+TGG + chr7_1:78553273-78553292 None:intergenic 30.0%
! GAAGATCTATTTTGTCAATG+TGG + chr7_1:78553309-78553328 None:intergenic 30.0%
CAAAATAGATCTTCTCTTAG+AGG - chr7_1:78553315-78553334 Msa1041040:intron 30.0%
!!! TGATTTTTTCGATGAACTTG+AGG - chr7_1:78553396-78553415 Msa1041040:CDS 30.0%
TGCAAAATAGATGAAGACAT+AGG + chr7_1:78553427-78553446 None:intergenic 30.0%
ACACTTGAATCAATCAAGAA+GGG + chr7_1:78553492-78553511 None:intergenic 30.0%
AACACTTGAATCAATCAAGA+AGG + chr7_1:78553493-78553512 None:intergenic 30.0%
ATTAATAGAGTAGCTAGGGA+GGG + chr7_1:78551145-78551164 None:intergenic 35.0%
AATTAATAGAGTAGCTAGGG+AGG + chr7_1:78551146-78551165 None:intergenic 35.0%
! CATTGAATTTAAGGTGGCTA+TGG - chr7_1:78551247-78551266 Msa1041040:CDS 35.0%
! ATGTTTCTGACTCAAGTTTG+GGG + chr7_1:78551286-78551305 None:intergenic 35.0%
! GATGTTTCTGACTCAAGTTT+GGG + chr7_1:78551287-78551306 None:intergenic 35.0%
! AGATGTTTCTGACTCAAGTT+TGG + chr7_1:78551288-78551307 None:intergenic 35.0%
ATATATGTTGTGCATGTCTC+AGG - chr7_1:78551458-78551477 Msa1041040:CDS 35.0%
CAGGAAAATGGTTGAGAAAA+CGG - chr7_1:78551477-78551496 Msa1041040:CDS 35.0%
! AAGGACTTCCTTCAGATTTT+TGG - chr7_1:78551545-78551564 Msa1041040:CDS 35.0%
!!! TTCCTTCAGATTTTTGGTCT+TGG - chr7_1:78551551-78551570 Msa1041040:CDS 35.0%
!!! TTTTGGTCTTGGAGGAAATA+TGG - chr7_1:78551562-78551581 Msa1041040:CDS 35.0%
TTGAATGTCACTACATGTGT+TGG - chr7_1:78551752-78551771 Msa1041040:CDS 35.0%
CCTGTCTTAAAACATCTCTA+AGG + chr7_1:78552204-78552223 None:intergenic 35.0%
!!! CCTTAGAGATGTTTTAAGAC+AGG - chr7_1:78552201-78552220 Msa1041040:intron 35.0%
! AATGAGCCTCATTTTACTTC+CGG + chr7_1:78552256-78552275 None:intergenic 35.0%
TACTATACCAAAGCAAACAG+CGG - chr7_1:78552403-78552422 Msa1041040:intron 35.0%
AAAGGACACAGCAGAAAAAA+AGG - chr7_1:78552427-78552446 Msa1041040:intron 35.0%
!! TCTTTTGGTGTATGGCTTTT+TGG + chr7_1:78552471-78552490 None:intergenic 35.0%
!!! CTATTGCTGTTTCGGTATTT+TGG + chr7_1:78552513-78552532 None:intergenic 35.0%
!! ATGCTTTGCTATTGCTGTTT+CGG + chr7_1:78552521-78552540 None:intergenic 35.0%
AAAGCATGCTACAACAGTAT+AGG - chr7_1:78552534-78552553 Msa1041040:intron 35.0%
TATAGGAACTGGTATGTTAG+TGG - chr7_1:78552551-78552570 Msa1041040:intron 35.0%
ATAGGAACTGGTATGTTAGT+GGG - chr7_1:78552552-78552571 Msa1041040:intron 35.0%
ATGTTGGTACAAATCTACAG+GGG - chr7_1:78552863-78552882 Msa1041040:intron 35.0%
!!! GCTTCTCTCTACTTGTTTTT+TGG + chr7_1:78552924-78552943 None:intergenic 35.0%
! ATCTTTGGTTGTTTCGGTTT+CGG + chr7_1:78553056-78553075 None:intergenic 35.0%
!! CTTCTATCTGTTTCTGTTCT+TGG + chr7_1:78553141-78553160 None:intergenic 35.0%
AGAACAGAAACAGATAGAAG+AGG - chr7_1:78553141-78553160 Msa1041040:CDS 35.0%
! CATCTATTTTGCACTTTACG+AGG - chr7_1:78553434-78553453 Msa1041040:five_prime_UTR 35.0%
!!! GGAGCATTTTTTCTGATGAA+AGG - chr7_1:78553455-78553474 Msa1041040:five_prime_UTR 35.0%
CACTTGAATCAATCAAGAAG+GGG + chr7_1:78553491-78553510 None:intergenic 35.0%
! TGTTTCTGACTCAAGTTTGG+GGG + chr7_1:78551285-78551304 None:intergenic 40.0%
TTGTGCATGTCTCAGGAAAA+TGG - chr7_1:78551465-78551484 Msa1041040:CDS 40.0%
GATTGGAGAGAATGTTAGCA+AGG - chr7_1:78551513-78551532 Msa1041040:CDS 40.0%
GTTAGCAAGGTGAAGAATGA+AGG - chr7_1:78551526-78551545 Msa1041040:CDS 40.0%
CTCCAAGACCAAAAATCTGA+AGG + chr7_1:78551556-78551575 None:intergenic 40.0%
!!! CTTCAGATTTTTGGTCTTGG+AGG - chr7_1:78551554-78551573 Msa1041040:CDS 40.0%
AAGAATGCACACCTTGGATA+TGG + chr7_1:78551610-78551629 None:intergenic 40.0%
AATGTCACTACATGTGTTGG+TGG - chr7_1:78551755-78551774 Msa1041040:CDS 40.0%
TTGCTTTGGTATAGTAGGCT+GGG + chr7_1:78552399-78552418 None:intergenic 40.0%
TTTGCTTTGGTATAGTAGGC+TGG + chr7_1:78552400-78552419 None:intergenic 40.0%
GCTGTTTGCTTTGGTATAGT+AGG + chr7_1:78552404-78552423 None:intergenic 40.0%
! TTTGGTTTCTTTCCTGTTGC+TGG + chr7_1:78552453-78552472 None:intergenic 40.0%
TGCTACAACAGTATAGGAAC+TGG - chr7_1:78552540-78552559 Msa1041040:intron 40.0%
TAGGAACTGGTATGTTAGTG+GGG - chr7_1:78552553-78552572 Msa1041040:intron 40.0%
!! AGGAAGTGCTAACACAAACA+CGG + chr7_1:78552828-78552847 None:intergenic 40.0%
TTGAGCTAAATTTGTGGTGG+AGG + chr7_1:78553020-78553039 None:intergenic 40.0%
TCGTTGAGCTAAATTTGTGG+TGG + chr7_1:78553023-78553042 None:intergenic 40.0%
TGGTCGTTGAGCTAAATTTG+TGG + chr7_1:78553026-78553045 None:intergenic 40.0%
! GTTTCGGTTTCGGATTCTTT+TGG + chr7_1:78553046-78553065 None:intergenic 40.0%
TGGGAGATCTTTGGTTGTTT+CGG + chr7_1:78553062-78553081 None:intergenic 40.0%
AGAAGTAACTGGGAGATCTT+TGG + chr7_1:78553071-78553090 None:intergenic 40.0%
AGATCTCCCAGTTACTTCTA+AGG - chr7_1:78553072-78553091 Msa1041040:CDS 40.0%
TTTAACTGTGCATAGCAGAG+TGG + chr7_1:78553346-78553365 None:intergenic 40.0%
AGAAAACGGTTGTGACTGTG+AGG - chr7_1:78551491-78551510 Msa1041040:CDS 45.0%
GGATATGGAGAGCCTTTGAT+TGG + chr7_1:78551595-78551614 None:intergenic 45.0%
TCAAAGGCTCTCCATATCCA+AGG - chr7_1:78551596-78551615 Msa1041040:CDS 45.0%
AGTGGAAAGAATGCACACCT+TGG + chr7_1:78551616-78551635 None:intergenic 45.0%
GTTAGTGTCAGTGTCGTCTT+CGG + chr7_1:78551692-78551711 None:intergenic 45.0%
!! TGTTGGTGGTATGTCAGTGA+CGG - chr7_1:78551769-78551788 Msa1041040:CDS 45.0%
ACAGGTTCAGTGACTCTAGT+TGG + chr7_1:78551982-78552001 None:intergenic 45.0%
AACTAGAGTCACTGAACCTG+TGG - chr7_1:78551981-78552000 Msa1041040:intron 45.0%
CTTTGGATTCTCTTGCCACT+TGG + chr7_1:78552008-78552027 None:intergenic 45.0%
AGCCTCCAAATTCGTTGGAA+CGG + chr7_1:78552228-78552247 None:intergenic 45.0%
TTCCAACGAATTTGGAGGCT+CGG - chr7_1:78552228-78552247 Msa1041040:intron 45.0%
! TATTTCAAGTGCCAAGCACC+AGG - chr7_1:78552330-78552349 Msa1041040:intron 45.0%
! TTTGCCTTTTAGTGCACTCC+TGG + chr7_1:78552351-78552370 None:intergenic 45.0%
CAGAAAAAAAGGCCAGCAAC+AGG - chr7_1:78552438-78552457 Msa1041040:intron 45.0%
!! GCTGTTTCGGTATTTTGGGA+GGG + chr7_1:78552508-78552527 None:intergenic 45.0%
!!! TGCTGTTTCGGTATTTTGGG+AGG + chr7_1:78552509-78552528 None:intergenic 45.0%
AGGAACTGGTATGTTAGTGG+GGG - chr7_1:78552554-78552573 Msa1041040:intron 45.0%
!!! TTTTTTGGAGGCCCATACCT+TGG - chr7_1:78552593-78552612 Msa1041040:intron 45.0%
!! TTTTTGGAGGCCCATACCTT+GGG - chr7_1:78552594-78552613 Msa1041040:intron 45.0%
GCAAGATCTTAAAACAGGGC+CGG + chr7_1:78552659-78552678 None:intergenic 45.0%
!! GGAAGTGCTAACACAAACAC+GGG + chr7_1:78552827-78552846 None:intergenic 45.0%
TTATAGGTGCAGCACATGCA+AGG - chr7_1:78552889-78552908 Msa1041040:intron 45.0%
TATAGGTGCAGCACATGCAA+GGG - chr7_1:78552890-78552909 Msa1041040:intron 45.0%
! AGCTAAATTTGTGGTGGAGG+AGG + chr7_1:78553017-78553036 None:intergenic 45.0%
ATCAATCAAGAAGGGGCAAC+AGG + chr7_1:78553484-78553503 None:intergenic 45.0%
TTCTGACTCAAGTTTGGGGG+AGG + chr7_1:78551282-78551301 None:intergenic 50.0%
ACGGTTGTGACTGTGAGGAT+TGG - chr7_1:78551496-78551515 Msa1041040:CDS 50.0%
!! TCGGTGCCGGAAGTAAAATG+AGG - chr7_1:78552247-78552266 Msa1041040:intron 50.0%
TTTAGTGCACTCCTGGTGCT+TGG + chr7_1:78552344-78552363 None:intergenic 50.0%
! AGCACCAGGAGTGCACTAAA+AGG - chr7_1:78552344-78552363 Msa1041040:intron 50.0%
ACCAAAGCAAACAGCGGCAA+AGG - chr7_1:78552409-78552428 Msa1041040:intron 50.0%
TCCTTTGCCGCTGTTTGCTT+TGG + chr7_1:78552413-78552432 None:intergenic 50.0%
!! GGTATGTTAGTGGGGGTACT+AGG - chr7_1:78552561-78552580 Msa1041040:intron 50.0%
!! TTTTGGAGGCCCATACCTTG+GGG - chr7_1:78552595-78552614 Msa1041040:intron 50.0%
! ATTTGTGGTGGAGGAGGAGA+GGG + chr7_1:78553011-78553030 None:intergenic 50.0%
! AATTTGTGGTGGAGGAGGAG+AGG + chr7_1:78553012-78553031 None:intergenic 50.0%
ATCTCCAACACACTGCTCAG+AGG - chr7_1:78553234-78553253 Msa1041040:intron 50.0%
ATGTCCTCTGAGCAGTGTGT+TGG + chr7_1:78553241-78553260 None:intergenic 50.0%
AGAGTAGCTAGGGAGGGAGA+AGG + chr7_1:78551139-78551158 None:intergenic 55.0%
CACTGAACCTGTGGTCCAAG+TGG - chr7_1:78551990-78552009 Msa1041040:intron 55.0%
! TCTCTTGCCACTTGGACCAC+AGG + chr7_1:78552000-78552019 None:intergenic 55.0%
CAGGGCCGTTCCAACGAATT+TGG - chr7_1:78552220-78552239 Msa1041040:intron 55.0%
GGCCGTTCCAACGAATTTGG+AGG - chr7_1:78552223-78552242 Msa1041040:intron 55.0%
CACCGAGCCTCCAAATTCGT+TGG + chr7_1:78552233-78552252 None:intergenic 55.0%
TTAAAACAGGGCCGGACCCT+GGG + chr7_1:78552651-78552670 None:intergenic 55.0%
!! CGAATTTGGAGGCTCGGTGC+CGG - chr7_1:78552234-78552253 Msa1041040:intron 60.0%
ACCAGGCCTCCCCAAGGTAT+GGG + chr7_1:78552607-78552626 None:intergenic 60.0%
TATAGCACCAGGCCTCCCCA+AGG + chr7_1:78552613-78552632 None:intergenic 60.0%
GCAAGCAGCGCTATAGCACC+AGG + chr7_1:78552624-78552643 None:intergenic 60.0%
TAAAACAGGGCCGGACCCTG+GGG + chr7_1:78552650-78552669 None:intergenic 60.0%
CTTAAAACAGGGCCGGACCC+TGG + chr7_1:78552652-78552671 None:intergenic 60.0%
AGAGGGCTGTGGGATCTGGA+TGG + chr7_1:78552994-78553013 None:intergenic 60.0%
TGGAGGCCCATACCTTGGGG+AGG - chr7_1:78552598-78552617 Msa1041040:intron 65.0%
CACCAGGCCTCCCCAAGGTA+TGG + chr7_1:78552608-78552627 None:intergenic 65.0%
AAAACAGGGCCGGACCCTGG+GGG + chr7_1:78552649-78552668 None:intergenic 65.0%
GAGGAGAGGGCTGTGGGATC+TGG + chr7_1:78552998-78553017 None:intergenic 65.0%
GTGGAGGAGGAGAGGGCTGT+GGG + chr7_1:78553004-78553023 None:intergenic 65.0%
GCCCATACCTTGGGGAGGCC+TGG - chr7_1:78552603-78552622 Msa1041040:intron 70.0%
TAGCGCTGCTTGCACCCCCC+AGG - chr7_1:78552631-78552650 Msa1041040:intron 70.0%
AGCGCTGCTTGCACCCCCCA+GGG - chr7_1:78552632-78552651 Msa1041040:intron 70.0%
TGCTTGCACCCCCCAGGGTC+CGG - chr7_1:78552637-78552656 Msa1041040:intron 70.0%
AAACAGGGCCGGACCCTGGG+GGG + chr7_1:78552648-78552667 None:intergenic 70.0%
GGTGGAGGAGGAGAGGGCTG+TGG + chr7_1:78553005-78553024 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 78551101 78553581 78551101 ID=Msa1041040;Name=Msa1041040
chr7_1 mRNA 78551101 78553581 78551101 ID=Msa1041040-mRNA-1;Parent=Msa1041040;Name=Msa1041040-mRNA-1;_AED=0.02;_eAED=0.02;_QI=165|1|1|1|1|1|3|83|277
chr7_1 exon 78551101 78551799 78551101 ID=Msa1041040-mRNA-1:exon:21020;Parent=Msa1041040-mRNA-1
chr7_1 exon 78553065 78553202 78553065 ID=Msa1041040-mRNA-1:exon:21019;Parent=Msa1041040-mRNA-1
chr7_1 exon 78553337 78553581 78553337 ID=Msa1041040-mRNA-1:exon:21018;Parent=Msa1041040-mRNA-1
chr7_1 five_prime_UTR 78553417 78553581 78553417 ID=Msa1041040-mRNA-1:five_prime_utr;Parent=Msa1041040-mRNA-1
chr7_1 CDS 78553337 78553416 78553337 ID=Msa1041040-mRNA-1:cds;Parent=Msa1041040-mRNA-1
chr7_1 CDS 78553065 78553202 78553065 ID=Msa1041040-mRNA-1:cds;Parent=Msa1041040-mRNA-1
chr7_1 CDS 78551184 78551799 78551184 ID=Msa1041040-mRNA-1:cds;Parent=Msa1041040-mRNA-1
chr7_1 three_prime_UTR 78551101 78551183 78551101 ID=Msa1041040-mRNA-1:three_prime_utr;Parent=Msa1041040-mRNA-1
Gene Sequence

>Msa1041040

ATGGACAGTAATGCCTCCCCCAAACTTGAGTCAGAAACATCTTTAGAGCTCAAACCAGAATCTCAAGTATCTAAGAAACGGAAAATGGTTGAGAAAACGGTTGTGACTGTGAGGATTGGAGAGAATGTTAGCAAGGTGAAGAATGAAGGACTTCCTTCAGATTTTTGGTCTTGGAGGAAATATGGACAAAAACCAATCAAAGGCTCTCCATATCCAAGGGGATATTATAGGTGCAGCACATGCAAGGGCTGTTCAGCCAAAAAACAAGTAGAGAGAAGCAGCACAGATGCTTCATTGCTCATCATCACCTATACTTCAACACATAACCATCCAGATCCCACAGCCCTCTCCTCCTCCACCACAAATTTAGCTCAACGACCAAAAGAATCCGAAACCGAAACAACCAAAGATCTCCCAGTTACTTCTAAGGAAGAAAACCAAGAACAGAAACAGATAGATTCTAAGGAAGAAAACCAAGAACAGAAACAGATAGAAGAGGAAATTAACAGTAATAAGAGCACTGTGAGTAGTGATCAAGTTACAAATGAAGAAAATTTTCATTACTTACAATCTCCAACACACTGCTCAGAGGACATCATTATAGACCAAGAAGATCCTTTCAAAGTAAATATGGAAAAAAGCCACATTGACAAAATAGATCTTCTCTTAGAGGAAGAGCCACTCTGCTATGCACAGTTAAAGAATTTGTCAGCATCTAAATCAGAAGAACTTGATTTTTTCGATGAACTTGAGGAGTTACCTATGTCTTCATCTATTTTGCACTTTACGAGGAGCATTTTTTCTGATGAAAGGATTCCTGTTGCCCCTTCTTGA
Protein sequence

>Msa1041040

MDSNASPKLESETSLELKPESQVSKKRKMVEKTVVTVRIGENVSKVKNEGLPSDFWSWRKYGQKPIKGSPYPRGYYRCSTCKGCSAKKQVERSSTDASLLIITYTSTHNHPDPTALSSSTTNLAQRPKESETETTKDLPVTSKEENQEQKQIDSKEENQEQKQIEEEINSNKSTVSSDQVTNEENFHYLQSPTHCSEDIIIDQEDPFKVNMEKSHIDKIDLLLEEEPLCYAQLKNLSASKSEELDFFDELEELPMSSSILHFTRSIFSDERIPVAPS*