Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1041470 | BAA92699.1 | 100.000 | 227 | 0 | 0 | 1 | 227 | 87 | 313 | 1.81e-170 | 481 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1041470 | sp|Q06009|PP2A_MEDSA | 100.000 | 227 | 0 | 0 | 1 | 227 | 87 | 313 | 3.21e-173 | 481 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1041470 | Q9MB04 | 100.000 | 227 | 0 | 0 | 1 | 227 | 87 | 313 | 8.64e-171 | 481 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1041470 | Msa1166660 | 0.972359 | 1.228937e-134 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1041470 | MtrunA17_Chr7g0268381 | 100.000 | 227 | 0 | 0 | 1 | 227 | 87 | 313 | 2.36e-174 | 481 |
| Msa1041470 | MtrunA17_Chr8g0378521 | 96.476 | 227 | 8 | 0 | 1 | 227 | 82 | 308 | 2.96e-169 | 468 |
| Msa1041470 | MtrunA17_Chr8g0364041 | 81.938 | 227 | 41 | 0 | 1 | 227 | 80 | 306 | 1.33e-146 | 410 |
| Msa1041470 | MtrunA17_Chr5g0415261 | 81.938 | 227 | 41 | 0 | 1 | 227 | 80 | 306 | 1.30e-145 | 408 |
| Msa1041470 | MtrunA17_Chr5g0445011 | 63.913 | 230 | 79 | 3 | 1 | 227 | 77 | 305 | 9.97e-109 | 315 |
| Msa1041470 | MtrunA17_Chr1g0165341 | 59.296 | 199 | 80 | 1 | 1 | 198 | 76 | 274 | 1.76e-90 | 268 |
| Msa1041470 | MtrunA17_Chr1g0190121 | 47.664 | 214 | 110 | 2 | 1 | 213 | 86 | 298 | 1.43e-72 | 223 |
| Msa1041470 | MtrunA17_Chr7g0274931 | 48.598 | 214 | 108 | 2 | 1 | 213 | 86 | 298 | 2.66e-72 | 223 |
| Msa1041470 | MtrunA17_Chr7g0272371 | 48.826 | 213 | 107 | 2 | 1 | 212 | 88 | 299 | 3.63e-72 | 222 |
| Msa1041470 | MtrunA17_Chr8g0334361 | 48.095 | 210 | 107 | 2 | 1 | 209 | 84 | 292 | 2.37e-71 | 219 |
| Msa1041470 | MtrunA17_Chr8g0387541 | 47.685 | 216 | 111 | 2 | 1 | 215 | 87 | 301 | 8.71e-71 | 219 |
| Msa1041470 | MtrunA17_Chr1g0186811 | 47.664 | 214 | 110 | 2 | 1 | 213 | 86 | 298 | 5.72e-70 | 217 |
| Msa1041470 | MtrunA17_Chr5g0436061 | 47.196 | 214 | 111 | 2 | 1 | 213 | 103 | 315 | 2.07e-69 | 215 |
| Msa1041470 | MtrunA17_Chr1g0167751 | 46.729 | 214 | 112 | 2 | 1 | 213 | 86 | 298 | 6.65e-69 | 214 |
| Msa1041470 | MtrunA17_Chr2g0322121 | 43.627 | 204 | 103 | 5 | 1 | 194 | 730 | 931 | 2.56e-47 | 167 |
| Msa1041470 | MtrunA17_Chr3g0097231 | 40.722 | 194 | 113 | 2 | 2 | 194 | 254 | 446 | 5.08e-47 | 161 |
| Msa1041470 | MtrunA17_Chr4g0025471 | 43.564 | 202 | 106 | 4 | 1 | 194 | 735 | 936 | 1.24e-46 | 165 |
| Msa1041470 | MtrunA17_Chr2g0330311 | 40.455 | 220 | 123 | 6 | 2 | 218 | 281 | 495 | 6.85e-44 | 154 |
| Msa1041470 | MtrunA17_Chr2g0330331 | 39.394 | 198 | 117 | 3 | 2 | 197 | 119 | 315 | 4.30e-41 | 143 |
| Msa1041470 | MtrunA17_Chr1g0196211 | 38.547 | 179 | 102 | 4 | 23 | 193 | 2 | 180 | 1.44e-36 | 129 |
| Msa1041470 | MtrunA17_Chr8g0369981 | 34.894 | 235 | 96 | 9 | 2 | 183 | 164 | 394 | 7.19e-27 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1041470 | AT2G42500.2 | 96.916 | 227 | 7 | 0 | 1 | 227 | 40 | 266 | 1.01e-170 | 470 |
| Msa1041470 | AT3G58500.1 | 97.357 | 227 | 6 | 0 | 1 | 227 | 87 | 313 | 1.80e-170 | 471 |
| Msa1041470 | AT2G42500.1 | 96.916 | 227 | 7 | 0 | 1 | 227 | 87 | 313 | 4.43e-170 | 471 |
| Msa1041470 | AT1G69960.1 | 81.057 | 227 | 43 | 0 | 1 | 227 | 81 | 307 | 3.59e-145 | 407 |
| Msa1041470 | AT1G59830.1 | 80.617 | 227 | 44 | 0 | 1 | 227 | 80 | 306 | 1.57e-144 | 405 |
| Msa1041470 | AT1G10430.2 | 80.617 | 227 | 44 | 0 | 1 | 227 | 80 | 306 | 1.93e-144 | 405 |
| Msa1041470 | AT1G10430.1 | 80.617 | 227 | 44 | 0 | 1 | 227 | 80 | 306 | 1.93e-144 | 405 |
| Msa1041470 | AT4G26720.1 | 65.217 | 230 | 76 | 3 | 1 | 227 | 77 | 305 | 7.01e-111 | 320 |
| Msa1041470 | AT1G59830.2 | 84.706 | 170 | 26 | 0 | 1 | 170 | 80 | 249 | 1.96e-110 | 318 |
| Msa1041470 | AT5G55260.1 | 63.319 | 229 | 82 | 2 | 1 | 227 | 77 | 305 | 4.50e-110 | 318 |
| Msa1041470 | AT5G55260.2 | 53.704 | 270 | 82 | 3 | 1 | 227 | 77 | 346 | 1.32e-101 | 298 |
| Msa1041470 | AT3G19980.1 | 59.296 | 199 | 80 | 1 | 1 | 198 | 76 | 274 | 2.13e-90 | 268 |
| Msa1041470 | AT1G50370.1 | 58.794 | 199 | 81 | 1 | 1 | 198 | 76 | 274 | 7.79e-90 | 267 |
| Msa1041470 | AT1G64040.1 | 50.233 | 215 | 105 | 2 | 1 | 214 | 87 | 300 | 5.88e-74 | 227 |
| Msa1041470 | AT2G29400.1 | 46.479 | 213 | 113 | 1 | 1 | 213 | 103 | 314 | 1.17e-73 | 226 |
| Msa1041470 | AT5G59160.3 | 47.196 | 214 | 111 | 2 | 1 | 213 | 96 | 308 | 3.62e-71 | 219 |
| Msa1041470 | AT5G59160.2 | 47.196 | 214 | 111 | 2 | 1 | 213 | 96 | 308 | 3.62e-71 | 219 |
| Msa1041470 | AT5G59160.1 | 47.196 | 214 | 111 | 2 | 1 | 213 | 96 | 308 | 3.62e-71 | 219 |
| Msa1041470 | AT3G05580.1 | 49.528 | 212 | 105 | 2 | 1 | 211 | 92 | 302 | 4.67e-71 | 219 |
| Msa1041470 | AT5G27840.1 | 48.585 | 212 | 107 | 2 | 1 | 211 | 92 | 302 | 8.58e-71 | 219 |
| Msa1041470 | AT5G27840.2 | 48.585 | 212 | 107 | 2 | 1 | 211 | 92 | 302 | 1.54e-70 | 218 |
| Msa1041470 | AT5G27840.3 | 48.585 | 212 | 107 | 2 | 1 | 211 | 92 | 302 | 1.54e-70 | 218 |
| Msa1041470 | AT5G27840.4 | 48.585 | 212 | 107 | 2 | 1 | 211 | 92 | 302 | 1.60e-70 | 219 |
| Msa1041470 | AT2G39840.1 | 47.196 | 214 | 111 | 2 | 1 | 213 | 100 | 312 | 1.72e-70 | 218 |
| Msa1041470 | AT4G11240.1 | 46.875 | 224 | 117 | 2 | 1 | 223 | 87 | 309 | 1.97e-70 | 218 |
| Msa1041470 | AT3G46820.1 | 45.794 | 214 | 114 | 2 | 1 | 213 | 96 | 308 | 2.32e-70 | 218 |
| Msa1041470 | AT5G43380.1 | 50.754 | 199 | 96 | 2 | 1 | 198 | 86 | 283 | 2.01e-69 | 216 |
| Msa1041470 | AT5G43380.2 | 50.754 | 199 | 96 | 2 | 1 | 198 | 86 | 283 | 2.09e-69 | 216 |
| Msa1041470 | AT5G43380.3 | 50.754 | 199 | 96 | 2 | 1 | 198 | 86 | 283 | 2.84e-69 | 215 |
| Msa1041470 | AT3G05580.2 | 52.469 | 162 | 75 | 2 | 1 | 161 | 92 | 252 | 1.60e-57 | 183 |
| Msa1041470 | AT2G42500.4 | 90.476 | 84 | 8 | 0 | 1 | 84 | 90 | 173 | 1.84e-49 | 160 |
| Msa1041470 | AT2G42810.1 | 40.455 | 220 | 123 | 5 | 2 | 218 | 256 | 470 | 6.27e-49 | 167 |
| Msa1041470 | AT2G42810.5 | 40.455 | 220 | 123 | 5 | 2 | 218 | 256 | 470 | 6.27e-49 | 167 |
| Msa1041470 | AT2G42810.4 | 40.455 | 220 | 123 | 5 | 2 | 218 | 256 | 470 | 6.27e-49 | 167 |
| Msa1041470 | AT2G42810.3 | 40.455 | 220 | 123 | 5 | 2 | 218 | 309 | 523 | 1.66e-48 | 167 |
| Msa1041470 | AT2G42810.2 | 40.455 | 220 | 123 | 5 | 2 | 218 | 310 | 524 | 1.72e-48 | 167 |
| Msa1041470 | AT2G42500.3 | 96.053 | 76 | 3 | 0 | 1 | 76 | 90 | 165 | 4.23e-48 | 156 |
| Msa1041470 | AT4G03080.1 | 43.137 | 204 | 108 | 4 | 1 | 196 | 616 | 819 | 4.58e-48 | 169 |
| Msa1041470 | AT2G42500.5 | 96.053 | 76 | 3 | 0 | 1 | 76 | 90 | 165 | 9.93e-48 | 155 |
| Msa1041470 | AT2G27210.1 | 43.069 | 202 | 107 | 4 | 1 | 194 | 741 | 942 | 1.50e-45 | 162 |
| Msa1041470 | AT2G27210.2 | 43.069 | 202 | 107 | 4 | 1 | 194 | 736 | 937 | 1.78e-45 | 162 |
| Msa1041470 | AT1G03445.1 | 40.976 | 205 | 110 | 6 | 1 | 196 | 542 | 744 | 5.79e-45 | 160 |
| Msa1041470 | AT1G03445.2 | 40.976 | 205 | 110 | 6 | 1 | 196 | 542 | 744 | 7.07e-45 | 159 |
| Msa1041470 | AT1G08420.1 | 42.079 | 202 | 109 | 4 | 1 | 194 | 752 | 953 | 3.13e-44 | 158 |
| Msa1041470 | AT1G08420.2 | 42.079 | 202 | 109 | 4 | 1 | 194 | 747 | 948 | 3.83e-44 | 158 |
| Msa1041470 | AT5G63870.1 | 31.868 | 273 | 122 | 10 | 2 | 212 | 112 | 382 | 1.98e-27 | 108 |
| Msa1041470 | AT5G63870.2 | 31.868 | 273 | 122 | 10 | 2 | 212 | 112 | 382 | 1.98e-27 | 108 |
| Msa1041470 | AT5G63870.3 | 33.854 | 192 | 89 | 6 | 2 | 157 | 112 | 301 | 2.97e-22 | 92.8 |
| Msa1041470 | AT1G48120.1 | 28.058 | 278 | 133 | 9 | 2 | 212 | 688 | 965 | 2.85e-20 | 89.4 |
| Msa1041470 | AT5G10900.3 | 25.000 | 256 | 143 | 10 | 2 | 213 | 258 | 508 | 1.09e-13 | 70.1 |
| Msa1041470 | AT5G10900.1 | 25.098 | 255 | 142 | 10 | 2 | 212 | 258 | 507 | 1.55e-13 | 69.7 |
| Msa1041470 | AT5G10900.2 | 25.098 | 255 | 142 | 10 | 2 | 212 | 258 | 507 | 1.93e-13 | 69.3 |
Find 89 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTGCTGGACACCCTTTC+TGG | 0.157363 | 7_1:-79041028 | Msa1041470:three_prime_UTR |
| AGATACAAACTACTTGTTTA+TGG | 0.157899 | 7_1:-79044821 | Msa1041470:exon |
| ATGCAGATTACTCAAGTATA+TGG | 0.186508 | 7_1:-79043555 | Msa1041470:intron |
| CAAGAACCTGACGGCTTTCA+TGG | 0.257019 | 7_1:+79043813 | None:intergenic |
| TCCAGCAGCAGCTGCTTTAC+AGG | 0.260597 | 7_1:+79041222 | None:intergenic |
| GAGCTCTAGCAATCAATTTA+AGG | 0.264882 | 7_1:+79041648 | None:intergenic |
| TATCTCCCTTTCAAGGCTTT+AGG | 0.291180 | 7_1:-79040917 | Msa1041470:three_prime_UTR |
| GATACAAACTACTTGTTTAT+GGG | 0.308452 | 7_1:-79044820 | Msa1041470:exon |
| CAGCGAATTACTATTCTTAG+AGG | 0.310291 | 7_1:-79043839 | Msa1041470:CDS |
| TTGTTATGGATGGATTTAAC+TGG | 0.323615 | 7_1:-79041619 | Msa1041470:CDS |
| GGTGCGAAACTCACTTTCTT+AGG | 0.330144 | 7_1:+79043517 | None:intergenic |
| AGGCCGCATTGATGTATAAT+AGG | 0.356750 | 7_1:-79041084 | Msa1041470:three_prime_UTR |
| CTTGCTGAATTATTTCGAAT+TGG | 0.356767 | 7_1:-79045155 | Msa1041470:five_prime_UTR |
| GCAATCATCAACCTCCAATA+TGG | 0.357239 | 7_1:+79041430 | None:intergenic |
| TGGGAACATGGCTTCCATAT+TGG | 0.362790 | 7_1:-79041444 | Msa1041470:CDS |
| ATAAACAAGTAGTTTGTATC+TGG | 0.366853 | 7_1:+79044823 | None:intergenic |
| GGAAGTAATCAGGCGTTCTT+CGG | 0.368865 | 7_1:+79041243 | None:intergenic |
| AATGTATGATGCTTGAGTTC+TGG | 0.372841 | 7_1:-79040720 | Msa1041470:three_prime_UTR |
| GAAGTAATCAGGCGTTCTTC+GGG | 0.382762 | 7_1:+79041244 | None:intergenic |
| TCCTGTAAAGCAGCTGCTGC+TGG | 0.384494 | 7_1:-79041223 | Msa1041470:exon |
| CCCCAACCACATCTGTCGTC+TGG | 0.389113 | 7_1:+79041852 | None:intergenic |
| GGGATTTCTCCTCGTGGTGC+TGG | 0.394555 | 7_1:-79041831 | Msa1041470:CDS |
| TAGAGCTCACCAGCTTGTTA+TGG | 0.403323 | 7_1:-79041633 | Msa1041470:CDS |
| ATTCAGCAAGATCATGAAAC+TGG | 0.407511 | 7_1:+79045168 | None:intergenic |
| CAAAGTTCCTTATGTTATCA+AGG | 0.409337 | 7_1:+79041931 | None:intergenic |
| CCCAGACGACAGATGTGGTT+GGG | 0.420068 | 7_1:-79041853 | Msa1041470:CDS |
| CGTGGTGCTGGATATACCTT+TGG | 0.425842 | 7_1:-79041819 | Msa1041470:CDS |
| GGCGTTCTTCGGGTGACATC+AGG | 0.427615 | 7_1:+79041254 | None:intergenic |
| TGCAGATTACTCAAGTATAT+GGG | 0.432515 | 7_1:-79043554 | Msa1041470:intron |
| ACATCAGGTTCTCCTCTCCT+TGG | 0.442605 | 7_1:+79041269 | None:intergenic |
| GAACTAACCAATGCAGTCAA+TGG | 0.442799 | 7_1:+79042617 | None:intergenic |
| TGTTGCACTCAAGAAATTGC+TGG | 0.444492 | 7_1:-79041041 | Msa1041470:three_prime_UTR |
| TTTGTTGAAACAGGAACAAA+AGG | 0.445485 | 7_1:-79041507 | Msa1041470:intron |
| GCTGAATTATTTCGAATTGG+AGG | 0.448922 | 7_1:-79045152 | Msa1041470:five_prime_UTR |
| CTGCTTTACAGGAAGTAATC+AGG | 0.452255 | 7_1:+79041233 | None:intergenic |
| GGTTCTCCTCTCCTTGGAGC+AGG | 0.456525 | 7_1:+79041275 | None:intergenic |
| CCACATCGGTAACAGTAGTT+AGG | 0.459380 | 7_1:+79041464 | None:intergenic |
| AACTAACCAATGCAGTCAAT+GGG | 0.462269 | 7_1:+79042618 | None:intergenic |
| GCTGCTGCTGGATGTCATAC+TGG | 0.466437 | 7_1:-79041211 | Msa1041470:intron |
| CTTGACAACTTCTCCAGAAA+GGG | 0.477521 | 7_1:+79041015 | None:intergenic |
| TTGAGACCCTTGATAACATA+AGG | 0.482810 | 7_1:-79041938 | Msa1041470:CDS |
| CTGAATTATTTCGAATTGGA+GGG | 0.499809 | 7_1:-79045151 | Msa1041470:five_prime_UTR |
| CAAGGGCCACACATTTATCC+AGG | 0.501944 | 7_1:-79041408 | Msa1041470:intron |
| CTTGTTTATGGGTGATTACG+TGG | 0.504101 | 7_1:-79044809 | Msa1041470:exon |
| TGCTGGATATACCTTTGGTC+AGG | 0.509404 | 7_1:-79041814 | Msa1041470:intron |
| CCCAACCACATCTGTCGTCT+GGG | 0.513775 | 7_1:+79041853 | None:intergenic |
| CTGTTACCGATGTGGGAACA+TGG | 0.518415 | 7_1:-79041456 | Msa1041470:CDS |
| GTTCAAGAGGTTCCTCATGA+AGG | 0.518712 | 7_1:-79041903 | Msa1041470:CDS |
| TTATCAAGGGTCTCAATTGA+AGG | 0.520619 | 7_1:+79041945 | None:intergenic |
| GAACATGGCTTCCATATTGG+AGG | 0.521949 | 7_1:-79041441 | Msa1041470:CDS |
| TCTTGACAACTTCTCCAGAA+AGG | 0.523060 | 7_1:+79041014 | None:intergenic |
| GCTCACCAGCTTGTTATGGA+TGG | 0.527955 | 7_1:-79041629 | Msa1041470:CDS |
| CTAACTACTGTTACCGATGT+GGG | 0.546791 | 7_1:-79041463 | Msa1041470:CDS |
| CCAGACGACAGATGTGGTTG+GGG | 0.546796 | 7_1:-79041852 | Msa1041470:CDS |
| AGGAAACCATGAAAGCCGTC+AGG | 0.550420 | 7_1:-79043819 | Msa1041470:intron |
| ACAGTACCTAAAGCCTTGAA+AGG | 0.554310 | 7_1:+79040911 | None:intergenic |
| GATATGGGAGTGCTAATGTC+TGG | 0.568331 | 7_1:-79042670 | Msa1041470:CDS |
| AAAGTTCCTTATGTTATCAA+GGG | 0.568470 | 7_1:+79041932 | None:intergenic |
| ATTGGAGGTTGATGATTGCA+AGG | 0.570519 | 7_1:-79041426 | Msa1041470:CDS |
| TTCAAGAGGTTCCTCATGAA+GGG | 0.570732 | 7_1:-79041902 | Msa1041470:CDS |
| GAACTTTGATCGTGTTCAAG+AGG | 0.573770 | 7_1:-79041916 | Msa1041470:CDS |
| TGCAGTTTGAACCTGCTCCA+AGG | 0.574796 | 7_1:-79041286 | Msa1041470:intron |
| TGTTATGGATGGATTTAACT+GGG | 0.578966 | 7_1:-79041618 | Msa1041470:CDS |
| TAAATCCATCCATAACAAGC+TGG | 0.579463 | 7_1:+79041624 | None:intergenic |
| CAGTACCTAAAGCCTTGAAA+GGG | 0.581114 | 7_1:+79040912 | None:intergenic |
| GTTGAAACAGGAACAAAAGG+TGG | 0.590107 | 7_1:-79041504 | Msa1041470:intron |
| ATTTCTTGAGTGCAACAGAT+CGG | 0.590648 | 7_1:+79041047 | None:intergenic |
| ACCCAGACGACAGATGTGGT+TGG | 0.595227 | 7_1:-79041854 | Msa1041470:CDS |
| AGTACTATTCCAGCAAAATG+TGG | 0.600115 | 7_1:-79040976 | Msa1041470:three_prime_UTR |
| TTGTCAAGATTATGACTACA+AGG | 0.601981 | 7_1:-79041000 | Msa1041470:three_prime_UTR |
| CCTAACTACTGTTACCGATG+TGG | 0.611540 | 7_1:-79041464 | Msa1041470:CDS |
| TTTGAACCTGCTCCAAGGAG+AGG | 0.612508 | 7_1:-79041281 | Msa1041470:CDS |
| ATTATTTCGAATTGGAGGGA+AGG | 0.613735 | 7_1:-79045147 | Msa1041470:intron |
| TTGGAGGTTGATGATTGCAA+GGG | 0.622354 | 7_1:-79041425 | Msa1041470:CDS |
| TCTTGAGTGCAACAGATCGG+TGG | 0.624266 | 7_1:+79041050 | None:intergenic |
| TTATTCTATCCAGCTCCTCG+TGG | 0.643970 | 7_1:-79043882 | Msa1041470:intron |
| GGCCTATGTGTGATCTACTG+TGG | 0.645133 | 7_1:-79041881 | Msa1041470:CDS |
| TGGAAGCCATGTTCCCACAT+CGG | 0.650065 | 7_1:+79041450 | None:intergenic |
| ATGGGTGATTACGTGGACCG+AGG | 0.657166 | 7_1:-79044802 | Msa1041470:CDS |
| AACAGACCTGGATAAATGTG+TGG | 0.672735 | 7_1:+79041402 | None:intergenic |
| TCTCAACTGAATAATAACCT+CGG | 0.691538 | 7_1:+79044785 | None:intergenic |
| TCACACATAGGCCCTTCATG+AGG | 0.702964 | 7_1:+79041891 | None:intergenic |
| CTAAGAATAGTAATTCGCTG+AGG | 0.707761 | 7_1:+79043842 | None:intergenic |
| ATCTCACTTTCAGTGCCACG+AGG | 0.708652 | 7_1:+79043867 | None:intergenic |
| CAGACGACAGATGTGGTTGG+GGG | 0.709867 | 7_1:-79041851 | Msa1041470:CDS |
| TTGCCTATTATACATCAATG+CGG | 0.720505 | 7_1:+79041081 | None:intergenic |
| GACCACAGTAGATCACACAT+AGG | 0.747052 | 7_1:+79041879 | None:intergenic |
| AAGGTATATCCAGCACCACG+AGG | 0.759939 | 7_1:+79041822 | None:intergenic |
| TCTGACCCAGACGACAGATG+TGG | 0.770934 | 7_1:-79041858 | Msa1041470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATATATCATGATTTG+AGG | - | chr7_1:79041757-79041776 | Msa1041470:intron | 15.0% |
| !!! | TCTTTTTAAATGTGAATTAT+AGG | - | chr7_1:79042547-79042566 | Msa1041470:intron | 15.0% |
| !!! | CTTTTTAAATGTGAATTATA+GGG | - | chr7_1:79042548-79042567 | Msa1041470:intron | 15.0% |
| !! | TCAAATCAAATATCTTTATT+TGG | + | chr7_1:79042903-79042922 | None:intergenic | 15.0% |
| !! | ATTAAAAATTTGGAAATTTG+AGG | - | chr7_1:79043371-79043390 | Msa1041470:intron | 15.0% |
| !! | ATTTATATCAATTGATATTG+TGG | - | chr7_1:79044774-79044793 | Msa1041470:intron | 15.0% |
| !! | AAATGTAACATAACATGATA+AGG | - | chr7_1:79040968-79040987 | Msa1041470:three_prime_UTR | 20.0% |
| !! | AAAATAAAACAAGTTTCTCA+TGG | + | chr7_1:79041148-79041167 | None:intergenic | 20.0% |
| !!! | ATATTTTCTGAAAAAACTGT+TGG | + | chr7_1:79041188-79041207 | None:intergenic | 20.0% |
| !! | TTAATGTGTTAAGATTTAGA+AGG | - | chr7_1:79041479-79041498 | Msa1041470:CDS | 20.0% |
| !!! | ATCTTACAATCATATTTTCA+AGG | - | chr7_1:79041559-79041578 | Msa1041470:intron | 20.0% |
| !! | ATTTATAAGATTCATCCATA+GGG | - | chr7_1:79041838-79041857 | Msa1041470:CDS | 20.0% |
| !! | AAAGAATACTTAGAGAAATA+AGG | + | chr7_1:79041868-79041887 | None:intergenic | 20.0% |
| !! | ACAAAAATAAATATCAATGC+AGG | + | chr7_1:79041922-79041941 | None:intergenic | 20.0% |
| !! | AATATAAGACATGTAATCAA+AGG | + | chr7_1:79041969-79041988 | None:intergenic | 20.0% |
| !! | TTTAGAAATAAATGCCATAA+AGG | + | chr7_1:79042150-79042169 | None:intergenic | 20.0% |
| !!! | ATTTAAAATTTAGCCATTCA+TGG | - | chr7_1:79042199-79042218 | Msa1041470:intron | 20.0% |
| !!! | TTTAATTTGAAGACTTGTAT+TGG | - | chr7_1:79042269-79042288 | Msa1041470:intron | 20.0% |
| !!! | ATATTTGTTAGTAGTGTTAT+TGG | - | chr7_1:79042512-79042531 | Msa1041470:intron | 20.0% |
| !! | TATTGCAATGGAAAATAAAA+AGG | + | chr7_1:79042578-79042597 | None:intergenic | 20.0% |
| !! | CATAAAATATTAAGAAACGA+GGG | + | chr7_1:79042635-79042654 | None:intergenic | 20.0% |
| !! | TTCCATATTCTTTATTCTTA+GGG | + | chr7_1:79042854-79042873 | None:intergenic | 20.0% |
| !! | ATTCCATATTCTTTATTCTT+AGG | + | chr7_1:79042855-79042874 | None:intergenic | 20.0% |
| !! | AAAGCAAAACTTTCTTATAT+TGG | + | chr7_1:79043027-79043046 | None:intergenic | 20.0% |
| !!! | TTAATCTTTATTTGCAGATA+TGG | - | chr7_1:79043203-79043222 | Msa1041470:intron | 20.0% |
| !!! | TAATCTTTATTTGCAGATAT+GGG | - | chr7_1:79043204-79043223 | Msa1041470:intron | 20.0% |
| !! | CAAAAATACATAAATAGAGA+GGG | + | chr7_1:79043304-79043323 | None:intergenic | 20.0% |
| !! | ACAAAAATACATAAATAGAG+AGG | + | chr7_1:79043305-79043324 | None:intergenic | 20.0% |
| !!! | ATATTTTTACCAAACAATGT+GGG | + | chr7_1:79044536-79044555 | None:intergenic | 20.0% |
| !! | AGTCAAACAACAAAAAATAA+AGG | + | chr7_1:79045134-79045153 | None:intergenic | 20.0% |
| ! | AAAATTGAAGACAGAATCTT+GGG | + | chr7_1:79040945-79040964 | None:intergenic | 25.0% |
| !! | ATAAACAAGTAGTTTGTATC+TGG | + | chr7_1:79041069-79041088 | None:intergenic | 25.0% |
| ! | AGATACAAACTACTTGTTTA+TGG | - | chr7_1:79041068-79041087 | Msa1041470:three_prime_UTR | 25.0% |
| ! | GATACAAACTACTTGTTTAT+GGG | - | chr7_1:79041069-79041088 | Msa1041470:three_prime_UTR | 25.0% |
| !!! | CATTTAATTTGTCTTTTGCT+CGG | - | chr7_1:79041348-79041367 | Msa1041470:intron | 25.0% |
| !!! | ATTTAATTTGTCTTTTGCTC+GGG | - | chr7_1:79041349-79041368 | Msa1041470:intron | 25.0% |
| ! | CCTGTGTTAAAATAATTTGA+AGG | + | chr7_1:79041417-79041436 | None:intergenic | 25.0% |
| !!! | CCTTCAAATTATTTTAACAC+AGG | - | chr7_1:79041414-79041433 | Msa1041470:CDS | 25.0% |
| ! | TAACACATTAAAAAGACAAC+TGG | + | chr7_1:79041470-79041489 | None:intergenic | 25.0% |
| ! | ATAAAATCTTAAACCTGCAA+TGG | - | chr7_1:79041689-79041708 | Msa1041470:intron | 25.0% |
| !!! | CAAATATCTGAGCTATTTTA+AGG | - | chr7_1:79041724-79041743 | Msa1041470:intron | 25.0% |
| !! | ATATATCATGATTTGAGGTT+TGG | - | chr7_1:79041762-79041781 | Msa1041470:intron | 25.0% |
| ! | ATTCACTAAATATCAATCAC+CGG | - | chr7_1:79041797-79041816 | Msa1041470:intron | 25.0% |
| ! | TGGAAAATAATTTACTGTAC+CGG | + | chr7_1:79041819-79041838 | None:intergenic | 25.0% |
| ! | CTATGGATGAATCTTATAAA+TGG | + | chr7_1:79041839-79041858 | None:intergenic | 25.0% |
| ! | CATTTATAAGATTCATCCAT+AGG | - | chr7_1:79041837-79041856 | Msa1041470:CDS | 25.0% |
| !! | TCTAAGTATTCTTTCTTTTG+AGG | - | chr7_1:79041874-79041893 | Msa1041470:CDS | 25.0% |
| ! | TACATTTGTATTCAGCAAAA+CGG | + | chr7_1:79042491-79042510 | None:intergenic | 25.0% |
| ! | CCATAAAATATTAAGAAACG+AGG | + | chr7_1:79042636-79042655 | None:intergenic | 25.0% |
| !! | CCTCGTTTCTTAATATTTTA+TGG | - | chr7_1:79042633-79042652 | Msa1041470:CDS | 25.0% |
| !!! | AATATTTTATGGTACTGAAC+TGG | - | chr7_1:79042644-79042663 | Msa1041470:CDS | 25.0% |
| ! | AAACCAACAAACAAATCAAA+AGG | + | chr7_1:79042720-79042739 | None:intergenic | 25.0% |
| ! | TCCATATTCTTTATTCTTAG+GGG | + | chr7_1:79042853-79042872 | None:intergenic | 25.0% |
| !!! | ATAAGAAAGTTTTGCTTTTG+AGG | - | chr7_1:79043029-79043048 | Msa1041470:intron | 25.0% |
| !!! | TAAGAAAGTTTTGCTTTTGA+GGG | - | chr7_1:79043030-79043049 | Msa1041470:intron | 25.0% |
| ! | TCATATAGATGTTACCTTAT+AGG | - | chr7_1:79043105-79043124 | Msa1041470:intron | 25.0% |
| !!! | TGGAAATTTGAGGAATTTTT+TGG | - | chr7_1:79043381-79043400 | Msa1041470:intron | 25.0% |
| ! | TATTGAACAGAAAGAAATTG+AGG | + | chr7_1:79043633-79043652 | None:intergenic | 25.0% |
| !! | AAAATATTTCTGATTCAACC+TGG | + | chr7_1:79043904-79043923 | None:intergenic | 25.0% |
| !!! | TCAGAAATATTTTGTTTGCA+TGG | - | chr7_1:79043911-79043930 | Msa1041470:intron | 25.0% |
| ! | AAAGTTCCTTATGTTATCAA+GGG | + | chr7_1:79043960-79043979 | None:intergenic | 25.0% |
| !!! | ATTCCAATTTGCATTTTTTC+AGG | - | chr7_1:79044187-79044206 | Msa1041470:intron | 25.0% |
| ! | TATCCTGAAAAAATGCAAAT+TGG | + | chr7_1:79044193-79044212 | None:intergenic | 25.0% |
| !!! | ATTTGCTCTTTAGAATTACA+GGG | - | chr7_1:79044334-79044353 | Msa1041470:intron | 25.0% |
| !!! | CATATTTTTACCAAACAATG+TGG | + | chr7_1:79044537-79044556 | None:intergenic | 25.0% |
| !! | AAAAAATATCCACATTTTGC+TGG | + | chr7_1:79044925-79044944 | None:intergenic | 25.0% |
| CTTGCTGAATTATTTCGAAT+TGG | - | chr7_1:79040734-79040753 | Msa1041470:three_prime_UTR | 30.0% | |
| CTGAATTATTTCGAATTGGA+GGG | - | chr7_1:79040738-79040757 | Msa1041470:three_prime_UTR | 30.0% | |
| AATCAATCTTCTGTTTCAGT+TGG | - | chr7_1:79040795-79040814 | Msa1041470:three_prime_UTR | 30.0% | |
| ATCAATCTTCTGTTTCAGTT+GGG | - | chr7_1:79040796-79040815 | Msa1041470:three_prime_UTR | 30.0% | |
| AAATTGAAGACAGAATCTTG+GGG | + | chr7_1:79040944-79040963 | None:intergenic | 30.0% | |
| CAAAATTGAAGACAGAATCT+TGG | + | chr7_1:79040946-79040965 | None:intergenic | 30.0% | |
| !!! | GCAATTTTTTTGCAAGTTTC+TGG | - | chr7_1:79040990-79041009 | Msa1041470:three_prime_UTR | 30.0% |
| TCTCAACTGAATAATAACCT+CGG | + | chr7_1:79041107-79041126 | None:intergenic | 30.0% | |
| ! | TTTTATGGTATTCATGTGAC+AGG | - | chr7_1:79041250-79041269 | Msa1041470:CDS | 30.0% |
| TTTATGGTATTCATGTGACA+GGG | - | chr7_1:79041251-79041270 | Msa1041470:CDS | 30.0% | |
| ACAATTTCCCACCTAATATT+TGG | + | chr7_1:79041280-79041299 | None:intergenic | 30.0% | |
| !! | AATTGGTAGTTGATGAAGTT+CGG | - | chr7_1:79041304-79041323 | Msa1041470:intron | 30.0% |
| !!! | TTTAATTTGTCTTTTGCTCG+GGG | - | chr7_1:79041350-79041369 | Msa1041470:intron | 30.0% |
| !! | AAGTATTCTTTCTTTTGAGG+CGG | - | chr7_1:79041877-79041896 | Msa1041470:CDS | 30.0% |
| !! | AACTAAAAAGCATCCATGAA+TGG | + | chr7_1:79042215-79042234 | None:intergenic | 30.0% |
| ACAAGTCTTCAAATTAAAGC+TGG | + | chr7_1:79042267-79042286 | None:intergenic | 30.0% | |
| ATGCAGATTACTCAAGTATA+TGG | - | chr7_1:79042334-79042353 | Msa1041470:intron | 30.0% | |
| TGCAGATTACTCAAGTATAT+GGG | - | chr7_1:79042335-79042354 | Msa1041470:intron | 30.0% | |
| !! | TATCTCATGTTTTGTTCTGT+TGG | + | chr7_1:79042411-79042430 | None:intergenic | 30.0% |
| ! | CTTTCTAGAGAACTATTTGT+AGG | - | chr7_1:79042434-79042453 | Msa1041470:intron | 30.0% |
| !!! | TAGCCTTTTGATTTGTTTGT+TGG | - | chr7_1:79042714-79042733 | Msa1041470:intron | 30.0% |
| TCGTATGGTATAAAACATCA+TGG | - | chr7_1:79042797-79042816 | Msa1041470:intron | 30.0% | |
| TTATTCTTAGGGGCAATAAT+AGG | + | chr7_1:79042843-79042862 | None:intergenic | 30.0% | |
| TAATAGAGCAAGAAACTAGA+CGG | + | chr7_1:79043151-79043170 | None:intergenic | 30.0% | |
| TCAATGGGAAAAAATCAAAG+AGG | + | chr7_1:79043259-79043278 | None:intergenic | 30.0% | |
| ! | TTCGAGATTTTGTAGTGTTT+TGG | - | chr7_1:79043324-79043343 | Msa1041470:intron | 30.0% |
| CTTTGAACAGCAAAAACAAA+AGG | + | chr7_1:79043456-79043475 | None:intergenic | 30.0% | |
| GAACAAGTGAGTAAAAAAGA+TGG | + | chr7_1:79043509-79043528 | None:intergenic | 30.0% | |
| AAGTCATAAGACATGATGTA+AGG | + | chr7_1:79043574-79043593 | None:intergenic | 30.0% | |
| AGTCTTTGTAGTTTCCAAAA+TGG | - | chr7_1:79043704-79043723 | Msa1041470:intron | 30.0% | |
| GTCTTTGTAGTTTCCAAAAT+GGG | - | chr7_1:79043705-79043724 | Msa1041470:intron | 30.0% | |
| TTATTTGTCATGTCAAACTG+AGG | + | chr7_1:79043809-79043828 | None:intergenic | 30.0% | |
| !! | GAAATATTTTGTTTGCATGG+TGG | - | chr7_1:79043914-79043933 | Msa1041470:intron | 30.0% |
| CAAAGTTCCTTATGTTATCA+AGG | + | chr7_1:79043961-79043980 | None:intergenic | 30.0% | |
| ! | TTGTTATGGATGGATTTAAC+TGG | - | chr7_1:79044270-79044289 | Msa1041470:intron | 30.0% |
| ! | TGTTATGGATGGATTTAACT+GGG | - | chr7_1:79044271-79044290 | Msa1041470:intron | 30.0% |
| GAAATTATCATTCCATGAGA+AGG | + | chr7_1:79044310-79044329 | None:intergenic | 30.0% | |
| !! | CATTTGCTCTTTAGAATTAC+AGG | - | chr7_1:79044333-79044352 | Msa1041470:intron | 30.0% |
| !! | TTTGCTCTTTAGAATTACAG+GGG | - | chr7_1:79044335-79044354 | Msa1041470:intron | 30.0% |
| TTTCAACAAAACAATGCACA+TGG | + | chr7_1:79044372-79044391 | None:intergenic | 30.0% | |
| TTTGTTGAAACAGGAACAAA+AGG | - | chr7_1:79044382-79044401 | Msa1041470:intron | 30.0% | |
| TTGCCTATTATACATCAATG+CGG | + | chr7_1:79044811-79044830 | None:intergenic | 30.0% | |
| TTGTCAAGATTATGACTACA+AGG | - | chr7_1:79044889-79044908 | Msa1041470:intron | 30.0% | |
| ! | TGTTTTATATCTCCCTTTCA+AGG | - | chr7_1:79044965-79044984 | Msa1041470:intron | 30.0% |
| !!! | TGACTGAATTTTTTAACTCG+TGG | - | chr7_1:79045000-79045019 | Msa1041470:intron | 30.0% |
| ATTCAGCAAGATCATGAAAC+TGG | + | chr7_1:79040724-79040743 | None:intergenic | 35.0% | |
| GCTGAATTATTTCGAATTGG+AGG | - | chr7_1:79040737-79040756 | Msa1041470:three_prime_UTR | 35.0% | |
| ATTATTTCGAATTGGAGGGA+AGG | - | chr7_1:79040742-79040761 | Msa1041470:three_prime_UTR | 35.0% | |
| TCAATCTTCTGTTTCAGTTG+GGG | - | chr7_1:79040797-79040816 | Msa1041470:three_prime_UTR | 35.0% | |
| TAAAAAATGCACCTCCAAAG+AGG | + | chr7_1:79041235-79041254 | None:intergenic | 35.0% | |
| !!! | CTTTGGAGGTGCATTTTTTA+TGG | - | chr7_1:79041235-79041254 | Msa1041470:exon | 35.0% |
| ! | GGTGGGAAATTGTTTTCAAT+TGG | - | chr7_1:79041287-79041306 | Msa1041470:intron | 35.0% |
| !! | ATTGGTAGTTGATGAAGTTC+GGG | - | chr7_1:79041305-79041324 | Msa1041470:intron | 35.0% |
| !!! | TTAATTTGTCTTTTGCTCGG+GGG | - | chr7_1:79041351-79041370 | Msa1041470:intron | 35.0% |
| GAAAATGGAACCTTACCAAA+TGG | - | chr7_1:79041382-79041401 | Msa1041470:intron | 35.0% | |
| AGGTCGACAAAGATGAAATA+TGG | - | chr7_1:79041499-79041518 | Msa1041470:intron | 35.0% | |
| GACTTGTGAGTAACAGATAA+CGG | - | chr7_1:79041601-79041620 | Msa1041470:intron | 35.0% | |
| ! | AACGGTAGTCCATTCAATTT+TGG | - | chr7_1:79041619-79041638 | Msa1041470:CDS | 35.0% |
| GACTACAATATATCCATTGC+AGG | + | chr7_1:79041705-79041724 | None:intergenic | 35.0% | |
| !!! | AGTATTCTTTCTTTTGAGGC+GGG | - | chr7_1:79041878-79041897 | Msa1041470:CDS | 35.0% |
| CTAAGAATAGTAATTCGCTG+AGG | + | chr7_1:79042050-79042069 | None:intergenic | 35.0% | |
| CAGCGAATTACTATTCTTAG+AGG | - | chr7_1:79042050-79042069 | Msa1041470:intron | 35.0% | |
| GAGTAAAAACAAGAACCTGA+CGG | + | chr7_1:79042088-79042107 | None:intergenic | 35.0% | |
| TAAATGCCATAAAGGAACTC+AGG | + | chr7_1:79042142-79042161 | None:intergenic | 35.0% | |
| ! | TCAGCAAAACGGATTTCATT+TGG | + | chr7_1:79042480-79042499 | None:intergenic | 35.0% |
| TCAATACGAGCATATTGCAA+TGG | + | chr7_1:79042590-79042609 | None:intergenic | 35.0% | |
| ! | TCTGAATTGTGCTGATGATT+TGG | - | chr7_1:79042683-79042702 | Msa1041470:intron | 35.0% |
| CCTTGACATCATCACTAATA+CGG | + | chr7_1:79042774-79042793 | None:intergenic | 35.0% | |
| GCCCCTAAGAATAAAGAATA+TGG | - | chr7_1:79042849-79042868 | Msa1041470:intron | 35.0% | |
| !! | AAAGTTTTGCTTTTGAGGGA+AGG | - | chr7_1:79043034-79043053 | Msa1041470:intron | 35.0% |
| CGCAAGAAACTAAACCTATA+AGG | + | chr7_1:79043122-79043141 | None:intergenic | 35.0% | |
| !!! | TTTTTTCCCATTGACTGCAT+TGG | - | chr7_1:79043265-79043284 | Msa1041470:intron | 35.0% |
| AACTAACCAATGCAGTCAAT+GGG | + | chr7_1:79043274-79043293 | None:intergenic | 35.0% | |
| GTGTACATTTCTCTTACATG+TGG | - | chr7_1:79043480-79043499 | Msa1041470:intron | 35.0% | |
| CTTCAGGTATTAACTTCTTG+AGG | + | chr7_1:79043536-79043555 | None:intergenic | 35.0% | |
| GAGTAACATTAGCATTCTTC+AGG | + | chr7_1:79043552-79043571 | None:intergenic | 35.0% | |
| AACTACAAAGACTCTGATGA+TGG | + | chr7_1:79043697-79043716 | None:intergenic | 35.0% | |
| ATTTCTGATTCAACCTGGAA+GGG | + | chr7_1:79043899-79043918 | None:intergenic | 35.0% | |
| ! | TATTTCTGATTCAACCTGGA+AGG | + | chr7_1:79043900-79043919 | None:intergenic | 35.0% |
| TTATCAAGGGTCTCAATTGA+AGG | + | chr7_1:79043947-79043966 | None:intergenic | 35.0% | |
| ! | TTGAGACCCTTGATAACATA+AGG | - | chr7_1:79043951-79043970 | Msa1041470:intron | 35.0% |
| ! | CAATGATTTTACCTGACCAA+AGG | + | chr7_1:79044089-79044108 | None:intergenic | 35.0% |
| ! | GAGCTCTAGCAATCAATTTA+AGG | + | chr7_1:79044244-79044263 | None:intergenic | 35.0% |
| TAAATCCATCCATAACAAGC+TGG | + | chr7_1:79044268-79044287 | None:intergenic | 35.0% | |
| TCATGTAATTGTCCTTCTCA+TGG | - | chr7_1:79044295-79044314 | Msa1041470:intron | 35.0% | |
| !! | GTGCATTGTTTTGTTGAAAC+AGG | - | chr7_1:79044373-79044392 | Msa1041470:intron | 35.0% |
| !!! | TATGTTTTAGTTCCATCCCT+TGG | - | chr7_1:79044553-79044572 | Msa1041470:intron | 35.0% |
| TTTGTGTACAGACAATCCAA+GGG | + | chr7_1:79044572-79044591 | None:intergenic | 35.0% | |
| ATTTGTGTACAGACAATCCA+AGG | + | chr7_1:79044573-79044592 | None:intergenic | 35.0% | |
| TCTACTTCCAGTCTAATTTC+AGG | - | chr7_1:79044715-79044734 | Msa1041470:intron | 35.0% | |
| ACAACTACCTGAAATTAGAC+TGG | + | chr7_1:79044725-79044744 | None:intergenic | 35.0% | |
| ! | AGTCTAATTTCAGGTAGTTG+TGG | - | chr7_1:79044724-79044743 | Msa1041470:intron | 35.0% |
| ATTTCTTGAGTGCAACAGAT+CGG | + | chr7_1:79044845-79044864 | None:intergenic | 35.0% | |
| AGTACTATTCCAGCAAAATG+TGG | - | chr7_1:79044913-79044932 | Msa1041470:intron | 35.0% | |
| AATGTATGATGCTTGAGTTC+TGG | - | chr7_1:79045169-79045188 | Msa1041470:five_prime_UTR | 35.0% | |
| !! | TAAGCCTCGAGCTTTTTCTT+TGG | + | chr7_1:79040863-79040882 | None:intergenic | 40.0% |
| CTTGTTTATGGGTGATTACG+TGG | - | chr7_1:79041080-79041099 | Msa1041470:three_prime_UTR | 40.0% | |
| TGACAGGGAGACCAAATATT+AGG | - | chr7_1:79041266-79041285 | Msa1041470:CDS | 40.0% | |
| AGGGAGACCAAATATTAGGT+GGG | - | chr7_1:79041270-79041289 | Msa1041470:CDS | 40.0% | |
| TCGGGGGATTAAACTGAAAA+TGG | - | chr7_1:79041367-79041386 | Msa1041470:intron | 40.0% | |
| TTAACACAGGCACATAAGTG+AGG | - | chr7_1:79041427-79041446 | Msa1041470:CDS | 40.0% | |
| TAACACAGGCACATAAGTGA+GGG | - | chr7_1:79041428-79041447 | Msa1041470:CDS | 40.0% | |
| CCTCAATGGCCAAAATTGAA+TGG | + | chr7_1:79041631-79041650 | None:intergenic | 40.0% | |
| !! | CCATTCAATTTTGGCCATTG+AGG | - | chr7_1:79041628-79041647 | Msa1041470:CDS | 40.0% |
| !! | TTCAATTTTGGCCATTGAGG+TGG | - | chr7_1:79041631-79041650 | Msa1041470:CDS | 40.0% |
| GAGAAATAAGGTCAACCCTA+TGG | + | chr7_1:79041856-79041875 | None:intergenic | 40.0% | |
| ATGTCTCCTGAGTTCCTTTA+TGG | - | chr7_1:79042133-79042152 | Msa1041470:intron | 40.0% | |
| ! | GAATTGTGCTGATGATTTGG+TGG | - | chr7_1:79042686-79042705 | Msa1041470:intron | 40.0% |
| ! | CCGTATTAGTGATGATGTCA+AGG | - | chr7_1:79042771-79042790 | Msa1041470:intron | 40.0% |
| ATGATGTCAAGGAAGTCGTA+TGG | - | chr7_1:79042782-79042801 | Msa1041470:intron | 40.0% | |
| ATTTGACCTAGCACTTACTG+TGG | - | chr7_1:79042917-79042936 | Msa1041470:intron | 40.0% | |
| GAAGGATTACATCCTTTGCT+AGG | - | chr7_1:79043052-79043071 | Msa1041470:intron | 40.0% | |
| GAACTAACCAATGCAGTCAA+TGG | + | chr7_1:79043275-79043294 | None:intergenic | 40.0% | |
| TTTCTGATTCAACCTGGAAG+GGG | + | chr7_1:79043898-79043917 | None:intergenic | 40.0% | |
| GAACTTTGATCGTGTTCAAG+AGG | - | chr7_1:79043973-79043992 | Msa1041470:intron | 40.0% | |
| TTCAAGAGGTTCCTCATGAA+GGG | - | chr7_1:79043987-79044006 | Msa1041470:intron | 40.0% | |
| GTTGAAACAGGAACAAAAGG+TGG | - | chr7_1:79044385-79044404 | Msa1041470:intron | 40.0% | |
| CTAACTACTGTTACCGATGT+GGG | - | chr7_1:79044426-79044445 | Msa1041470:intron | 40.0% | |
| GCAATCATCAACCTCCAATA+TGG | + | chr7_1:79044462-79044481 | None:intergenic | 40.0% | |
| !! | ATTGGAGGTTGATGATTGCA+AGG | - | chr7_1:79044463-79044482 | Msa1041470:intron | 40.0% |
| !! | TTGGAGGTTGATGATTGCAA+GGG | - | chr7_1:79044464-79044483 | Msa1041470:intron | 40.0% |
| AACAGACCTGGATAAATGTG+TGG | + | chr7_1:79044490-79044509 | None:intergenic | 40.0% | |
| GAATAACAGAGAAACAGACC+TGG | + | chr7_1:79044502-79044521 | None:intergenic | 40.0% | |
| CACAATTTGCCCACATTGTT+TGG | - | chr7_1:79044524-79044543 | Msa1041470:intron | 40.0% | |
| CTGCTTTACAGGAAGTAATC+AGG | + | chr7_1:79044659-79044678 | None:intergenic | 40.0% | |
| GATGTCATACTGGTATATCG+TGG | - | chr7_1:79044688-79044707 | Msa1041470:intron | 40.0% | |
| TTGATATTGTGGTTGTCCAG+AGG | - | chr7_1:79044785-79044804 | Msa1041470:CDS | 40.0% | |
| ! | AGGCCGCATTGATGTATAAT+AGG | - | chr7_1:79044805-79044824 | Msa1041470:CDS | 40.0% |
| TGTTGCACTCAAGAAATTGC+TGG | - | chr7_1:79044848-79044867 | Msa1041470:intron | 40.0% | |
| CTTGACAACTTCTCCAGAAA+GGG | + | chr7_1:79044877-79044896 | None:intergenic | 40.0% | |
| TCTTGACAACTTCTCCAGAA+AGG | + | chr7_1:79044878-79044897 | None:intergenic | 40.0% | |
| TATCTCCCTTTCAAGGCTTT+AGG | - | chr7_1:79044972-79044991 | Msa1041470:intron | 40.0% | |
| CAGTACCTAAAGCCTTGAAA+GGG | + | chr7_1:79044980-79044999 | None:intergenic | 40.0% | |
| ACAGTACCTAAAGCCTTGAA+AGG | + | chr7_1:79044981-79045000 | None:intergenic | 40.0% | |
| ! | AAAGTGCATCGGAGGTATAG+AGG | - | chr7_1:79040882-79040901 | Msa1041470:three_prime_UTR | 45.0% |
| CTCTCTGCATAAGACCTCTT+TGG | - | chr7_1:79041218-79041237 | Msa1041470:three_prime_UTR | 45.0% | |
| TCTGCATAAGACCTCTTTGG+AGG | - | chr7_1:79041221-79041240 | Msa1041470:exon | 45.0% | |
| CAGGGAGACCAAATATTAGG+TGG | - | chr7_1:79041269-79041288 | Msa1041470:CDS | 45.0% | |
| ! | GCAGTATCTGCCATTTGGTA+AGG | + | chr7_1:79041395-79041414 | None:intergenic | 45.0% |
| TGAAGGCAGTATCTGCCATT+TGG | + | chr7_1:79041400-79041419 | None:intergenic | 45.0% | |
| TTATTCTATCCAGCTCCTCG+TGG | - | chr7_1:79042007-79042026 | Msa1041470:intron | 45.0% | |
| GGTGCGAAACTCACTTTCTT+AGG | + | chr7_1:79042375-79042394 | None:intergenic | 45.0% | |
| TTGTTCTGTTGGACCTCCAA+AGG | + | chr7_1:79042400-79042419 | None:intergenic | 45.0% | |
| ! | ATGGTACTGAACTGGAGTTC+TGG | - | chr7_1:79042652-79042671 | Msa1041470:CDS | 45.0% |
| ! | TGGTACTGAACTGGAGTTCT+GGG | - | chr7_1:79042653-79042672 | Msa1041470:CDS | 45.0% |
| CTTAGGGGCAATAATAGGAC+AGG | + | chr7_1:79042838-79042857 | None:intergenic | 45.0% | |
| GTTTGTCCACAGTAAGTGCT+AGG | + | chr7_1:79042926-79042945 | None:intergenic | 45.0% | |
| CATAAAGCTGAGCCTAGCAA+AGG | + | chr7_1:79043067-79043086 | None:intergenic | 45.0% | |
| !! | GATATGGGAGTGCTAATGTC+TGG | - | chr7_1:79043219-79043238 | Msa1041470:intron | 45.0% |
| ! | CACAACAGACACTCCCATTT+TGG | + | chr7_1:79043721-79043740 | None:intergenic | 45.0% |
| GTTCAAGAGGTTCCTCATGA+AGG | - | chr7_1:79043986-79044005 | Msa1041470:intron | 45.0% | |
| GACCACAGTAGATCACACAT+AGG | + | chr7_1:79044013-79044032 | None:intergenic | 45.0% | |
| TGCTGGATATACCTTTGGTC+AGG | - | chr7_1:79044075-79044094 | Msa1041470:intron | 45.0% | |
| !! | TAGAGCTCACCAGCTTGTTA+TGG | - | chr7_1:79044256-79044275 | Msa1041470:intron | 45.0% |
| CCACATCGGTAACAGTAGTT+AGG | + | chr7_1:79044428-79044447 | None:intergenic | 45.0% | |
| CCTAACTACTGTTACCGATG+TGG | - | chr7_1:79044425-79044444 | Msa1041470:intron | 45.0% | |
| TGGGAACATGGCTTCCATAT+TGG | - | chr7_1:79044445-79044464 | Msa1041470:intron | 45.0% | |
| GAACATGGCTTCCATATTGG+AGG | - | chr7_1:79044448-79044467 | Msa1041470:intron | 45.0% | |
| TGTACAGACAATCCAAGGGA+TGG | + | chr7_1:79044568-79044587 | None:intergenic | 45.0% | |
| GAAGTAATCAGGCGTTCTTC+GGG | + | chr7_1:79044648-79044667 | None:intergenic | 45.0% | |
| GGAAGTAATCAGGCGTTCTT+CGG | + | chr7_1:79044649-79044668 | None:intergenic | 45.0% | |
| AGGTAGTTGTGGATCCTCTT+TGG | - | chr7_1:79044735-79044754 | Msa1041470:intron | 45.0% | |
| CTACAGCAATCTCACCAAAG+AGG | + | chr7_1:79044752-79044771 | None:intergenic | 45.0% | |
| CTCTTTGGTGAGATTGCTGT+AGG | - | chr7_1:79044750-79044769 | Msa1041470:intron | 45.0% | |
| TTATACATCAATGCGGCCTC+TGG | + | chr7_1:79044804-79044823 | None:intergenic | 45.0% | |
| AAATTGCTGGACACCCTTTC+TGG | - | chr7_1:79044861-79044880 | Msa1041470:intron | 45.0% | |
| !! | TATAATGAAAATTAAAAATT+TGG | - | chr7_1:79043361-79043380 | Msa1041470:intron | 5.0% |
| !! | TTATAATTTCAATTAATATT+AGG | + | chr7_1:79043426-79043445 | None:intergenic | 5.0% |
| !! | CCTCGAGCTTTTTCTTTGGC+AGG | + | chr7_1:79040859-79040878 | None:intergenic | 50.0% |
| CCTGCCAAAGAAAAAGCTCG+AGG | - | chr7_1:79040856-79040875 | Msa1041470:three_prime_UTR | 50.0% | |
| GCTCGAGGCTTAAAGTGCAT+CGG | - | chr7_1:79040871-79040890 | Msa1041470:three_prime_UTR | 50.0% | |
| CTGTTCATAACCACCACCCA+TGG | + | chr7_1:79041658-79041677 | None:intergenic | 50.0% | |
| !!! | TGAGGCGGGATTTTGACTGA+TGG | - | chr7_1:79041892-79041911 | Msa1041470:CDS | 50.0% |
| ATCTCACTTTCAGTGCCACG+AGG | + | chr7_1:79042025-79042044 | None:intergenic | 50.0% | |
| AGGAAACCATGAAAGCCGTC+AGG | - | chr7_1:79042070-79042089 | Msa1041470:intron | 50.0% | |
| CAAGAACCTGACGGCTTTCA+TGG | + | chr7_1:79042079-79042098 | None:intergenic | 50.0% | |
| GTGAGTTTCGCACCTTCCTT+TGG | - | chr7_1:79042381-79042400 | Msa1041470:intron | 50.0% | |
| AGTTTCGCACCTTCCTTTGG+AGG | - | chr7_1:79042384-79042403 | Msa1041470:intron | 50.0% | |
| TCTGTTGGACCTCCAAAGGA+AGG | + | chr7_1:79042396-79042415 | None:intergenic | 50.0% | |
| !! | GGAAGGGGCATTATGAGGTT+TGG | + | chr7_1:79043883-79043902 | None:intergenic | 50.0% |
| AACCTCATAATGCCCCTTCC+AGG | - | chr7_1:79043883-79043902 | Msa1041470:intron | 50.0% | |
| !! | AACCTGGAAGGGGCATTATG+AGG | + | chr7_1:79043888-79043907 | None:intergenic | 50.0% |
| TCACACATAGGCCCTTCATG+AGG | + | chr7_1:79044001-79044020 | None:intergenic | 50.0% | |
| GGCCTATGTGTGATCTACTG+TGG | - | chr7_1:79044008-79044027 | Msa1041470:intron | 50.0% | |
| AAGGTATATCCAGCACCACG+AGG | + | chr7_1:79044070-79044089 | None:intergenic | 50.0% | |
| ! | CGTGGTGCTGGATATACCTT+TGG | - | chr7_1:79044070-79044089 | Msa1041470:intron | 50.0% |
| !! | GCTCACCAGCTTGTTATGGA+TGG | - | chr7_1:79044260-79044279 | Msa1041470:intron | 50.0% |
| CTGTTACCGATGTGGGAACA+TGG | - | chr7_1:79044433-79044452 | Msa1041470:intron | 50.0% | |
| TGGAAGCCATGTTCCCACAT+CGG | + | chr7_1:79044442-79044461 | None:intergenic | 50.0% | |
| CAAGGGCCACACATTTATCC+AGG | - | chr7_1:79044481-79044500 | Msa1041470:intron | 50.0% | |
| TGCAGTTTGAACCTGCTCCA+AGG | - | chr7_1:79044603-79044622 | Msa1041470:intron | 50.0% | |
| TTTGAACCTGCTCCAAGGAG+AGG | - | chr7_1:79044608-79044627 | Msa1041470:intron | 50.0% | |
| ACATCAGGTTCTCCTCTCCT+TGG | + | chr7_1:79044623-79044642 | None:intergenic | 50.0% | |
| TCTTGAGTGCAACAGATCGG+TGG | + | chr7_1:79044842-79044861 | None:intergenic | 50.0% | |
| CGAGGCTTAAAGTGCATCGG+AGG | - | chr7_1:79040874-79040893 | Msa1041470:three_prime_UTR | 55.0% | |
| ATGGGTGATTACGTGGACCG+AGG | - | chr7_1:79041087-79041106 | Msa1041470:three_prime_UTR | 55.0% | |
| TTGGCCATTGAGGTGGACCA+TGG | - | chr7_1:79041638-79041657 | Msa1041470:CDS | 55.0% | |
| TGGCCATTGAGGTGGACCAT+GGG | - | chr7_1:79041639-79041658 | Msa1041470:CDS | 55.0% | |
| TCTGACCCAGACGACAGATG+TGG | - | chr7_1:79044031-79044050 | Msa1041470:intron | 55.0% | |
| ACCCAGACGACAGATGTGGT+TGG | - | chr7_1:79044035-79044054 | Msa1041470:intron | 55.0% | |
| CCCAACCACATCTGTCGTCT+GGG | + | chr7_1:79044039-79044058 | None:intergenic | 55.0% | |
| CCCAGACGACAGATGTGGTT+GGG | - | chr7_1:79044036-79044055 | Msa1041470:intron | 55.0% | |
| CCAGACGACAGATGTGGTTG+GGG | - | chr7_1:79044037-79044056 | Msa1041470:intron | 55.0% | |
| CAGACGACAGATGTGGTTGG+GGG | - | chr7_1:79044038-79044057 | Msa1041470:intron | 55.0% | |
| TCCTGTAAAGCAGCTGCTGC+TGG | - | chr7_1:79044666-79044685 | Msa1041470:intron | 55.0% | |
| ! | TCCAGCAGCAGCTGCTTTAC+AGG | + | chr7_1:79044670-79044689 | None:intergenic | 55.0% |
| GCTGCTGCTGGATGTCATAC+TGG | - | chr7_1:79044678-79044697 | Msa1041470:intron | 55.0% | |
| CCACCCATGGTCCACCTCAA+TGG | + | chr7_1:79041645-79041664 | None:intergenic | 60.0% | |
| CCATTGAGGTGGACCATGGG+TGG | - | chr7_1:79041642-79041661 | Msa1041470:CDS | 60.0% | |
| TTGAGGTGGACCATGGGTGG+TGG | - | chr7_1:79041645-79041664 | Msa1041470:CDS | 60.0% | |
| CTTTCAGTGCCACGAGGAGC+TGG | + | chr7_1:79042019-79042038 | None:intergenic | 60.0% | |
| CCCCAACCACATCTGTCGTC+TGG | + | chr7_1:79044040-79044059 | None:intergenic | 60.0% | |
| GGTTGGGGGATTTCTCCTCG+TGG | - | chr7_1:79044052-79044071 | Msa1041470:intron | 60.0% | |
| GGGATTTCTCCTCGTGGTGC+TGG | - | chr7_1:79044058-79044077 | Msa1041470:intron | 60.0% | |
| GGTTCTCCTCTCCTTGGAGC+AGG | + | chr7_1:79044617-79044636 | None:intergenic | 60.0% | |
| GGCGTTCTTCGGGTGACATC+AGG | + | chr7_1:79044638-79044657 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 79040713 | 79045198 | 79040713 | ID=Msa1041470;Name=Msa1041470 |
| chr7_1 | mRNA | 79040713 | 79045198 | 79040713 | ID=Msa1041470-mRNA-1;Parent=Msa1041470;Name=Msa1041470-mRNA-1;_AED=0.16;_eAED=0.16;_QI=75|1|1|1|0.77|0.7|10|420|227 |
| chr7_1 | exon | 79040713 | 79041106 | 79040713 | ID=Msa1041470-mRNA-1:exon:21255;Parent=Msa1041470-mRNA-1 |
| chr7_1 | exon | 79041212 | 79041303 | 79041212 | ID=Msa1041470-mRNA-1:exon:21254;Parent=Msa1041470-mRNA-1 |
| chr7_1 | exon | 79041409 | 79041516 | 79041409 | ID=Msa1041470-mRNA-1:exon:21253;Parent=Msa1041470-mRNA-1 |
| chr7_1 | exon | 79041613 | 79041702 | 79041613 | ID=Msa1041470-mRNA-1:exon:21252;Parent=Msa1041470-mRNA-1 |
| chr7_1 | exon | 79041815 | 79042006 | 79041815 | ID=Msa1041470-mRNA-1:exon:21251;Parent=Msa1041470-mRNA-1 |
| chr7_1 | exon | 79042625 | 79042691 | 79042625 | ID=Msa1041470-mRNA-1:exon:21250;Parent=Msa1041470-mRNA-1 |
| chr7_1 | exon | 79043531 | 79043571 | 79043531 | ID=Msa1041470-mRNA-1:exon:21249;Parent=Msa1041470-mRNA-1 |
| chr7_1 | exon | 79043820 | 79043891 | 79043820 | ID=Msa1041470-mRNA-1:exon:21248;Parent=Msa1041470-mRNA-1 |
| chr7_1 | exon | 79044777 | 79044848 | 79044777 | ID=Msa1041470-mRNA-1:exon:21247;Parent=Msa1041470-mRNA-1 |
| chr7_1 | exon | 79045148 | 79045198 | 79045148 | ID=Msa1041470-mRNA-1:exon:21246;Parent=Msa1041470-mRNA-1 |
| chr7_1 | five_prime_UTR | 79045148 | 79045198 | 79045148 | ID=Msa1041470-mRNA-1:five_prime_utr;Parent=Msa1041470-mRNA-1 |
| chr7_1 | five_prime_UTR | 79044825 | 79044848 | 79044825 | ID=Msa1041470-mRNA-1:five_prime_utr;Parent=Msa1041470-mRNA-1 |
| chr7_1 | CDS | 79044777 | 79044824 | 79044777 | ID=Msa1041470-mRNA-1:cds;Parent=Msa1041470-mRNA-1 |
| chr7_1 | CDS | 79043820 | 79043891 | 79043820 | ID=Msa1041470-mRNA-1:cds;Parent=Msa1041470-mRNA-1 |
| chr7_1 | CDS | 79043531 | 79043571 | 79043531 | ID=Msa1041470-mRNA-1:cds;Parent=Msa1041470-mRNA-1 |
| chr7_1 | CDS | 79042625 | 79042691 | 79042625 | ID=Msa1041470-mRNA-1:cds;Parent=Msa1041470-mRNA-1 |
| chr7_1 | CDS | 79041815 | 79042006 | 79041815 | ID=Msa1041470-mRNA-1:cds;Parent=Msa1041470-mRNA-1 |
| chr7_1 | CDS | 79041613 | 79041702 | 79041613 | ID=Msa1041470-mRNA-1:cds;Parent=Msa1041470-mRNA-1 |
| chr7_1 | CDS | 79041409 | 79041516 | 79041409 | ID=Msa1041470-mRNA-1:cds;Parent=Msa1041470-mRNA-1 |
| chr7_1 | CDS | 79041238 | 79041303 | 79041238 | ID=Msa1041470-mRNA-1:cds;Parent=Msa1041470-mRNA-1 |
| chr7_1 | three_prime_UTR | 79041212 | 79041237 | 79041212 | ID=Msa1041470-mRNA-1:three_prime_utr;Parent=Msa1041470-mRNA-1 |
| chr7_1 | three_prime_UTR | 79040713 | 79041106 | 79040713 | ID=Msa1041470-mRNA-1:three_prime_utr;Parent=Msa1041470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
