AlfalfaGEDB | Msa1042950

M. sativa cultivar zhongmu-4 / Msa1042950

KEGG: K13418
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1042950	XP_003613191.1	97.642	636	4	1	1	636	1	625	0.0	1268

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1042950	sp\|Q93ZS4\|NIK3_ARATH	73.171	656	132	10	1	636	1	632	0.0	910

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1042950	E2IXG6	97.642	636	4	1	1	636	1	625	0.0	1268

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0721900	Msa1042950	0.917179	7.271216e-86	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1042950	MtrunA17_Chr5g0413291	97.642	636	4	1	1	636	1	625	1268
Msa1042950	MtrunA17_Chr7g0220741	66.505	618	189	5	22	636	24	626	834
Msa1042950	MtrunA17_Chr0c03g0490031	63.191	633	210	7	10	636	6	621	797
Msa1042950	MtrunA17_Chr6g0456231	62.382	638	215	7	3	636	9	625	781
Msa1042950	MtrunA17_Chr4g0073471	59.084	633	212	7	32	636	27	640	707
Msa1042950	MtrunA17_Chr2g0284101	56.331	616	248	6	22	636	27	622	663
Msa1042950	MtrunA17_Chr2g0278861	52.566	643	266	10	1	636	5	615	592
Msa1042950	MtrunA17_Chr1g0200911	51.506	631	248	5	32	636	29	627	592
Msa1042950	MtrunA17_Chr2g0278831	52.913	635	269	5	5	636	12	619	592
Msa1042950	MtrunA17_Chr2g0278871	50.786	636	281	7	4	636	14	620	585

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1042950	AT1G60800.1	73.171	656	132	10	1	636	1	632	910
Msa1042950	AT1G60800.2	74.194	589	109	9	67	636	1	565	819
Msa1042950	AT3G25560.1	64.194	620	199	8	24	636	32	635	795
Msa1042950	AT3G25560.3	64.078	618	199	8	24	634	32	633	789
Msa1042950	AT3G25560.2	63.929	621	200	9	24	636	32	636	788
Msa1042950	AT5G16000.1	63.505	622	200	8	26	636	33	638	782
Msa1042950	AT2G23950.1	57.413	634	228	8	23	636	23	634	694
Msa1042950	AT4G30520.1	58.895	579	219	4	22	599	25	585	666
Msa1042950	AT5G45780.1	54.304	639	259	10	1	636	6	614	646
Msa1042950	AT5G45780.2	54.925	599	241	8	39	636	1	571	621

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Find 169 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTTGACATAGTTGAAT+TGG	0.299026	7_2:+691555	Msa1042950:CDS
AAAGACTATAATGCAGCTGG+TGG	0.653834	7_2:+690216	Msa1042950:CDS
AAAGATTATTGTGTCACCTA+GGG	0.614712	7_2:-691804	None:intergenic
AAATCTGAATATCTTTGAGG+CGG	0.600270	7_2:-691736	None:intergenic
AAATGACCAAGGCGCACTTC+AGG	0.334586	7_2:-690057	None:intergenic
AACAACCCAACACAAGATAA+TGG	0.429962	7_2:+687240	Msa1042950:five_prime_UTR
AACTTTGACATAGTTGAATT+GGG	0.401732	7_2:+691556	Msa1042950:CDS
AAGAAAGAACCAACAGACAA+AGG	0.558137	7_2:-687171	None:intergenic
AAGAACATTCTAGGAAGAGG+TGG	0.600590	7_2:+690132	Msa1042950:CDS
AAGACTGACGTGTTTGGGTA+TGG	0.477881	7_2:+691227	Msa1042950:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGATTCCATTATCTTGTGTT+GGG	-	chr7_2:687248-687267	None:intergenic	30.0%
TTGATTCCATTATCTTGTGT+TGG	-	chr7_2:687249-687268	None:intergenic	30.0%
TTATAGTATGCTTTCTCAGT+TGG	+	chr7_2:687357-687376	Msa1042950:five_prime_UTR	30.0%
CTCATTGAATTGTGACTTAA+TGG	+	chr7_2:687446-687465	Msa1042950:five_prime_UTR	30.0%
TTTGTTTGGATAAGGTGATA+AGG	+	chr7_2:687532-687551	Msa1042950:five_prime_UTR	30.0%
TGATAAGGATTCAACTTTGT+GGG	+	chr7_2:687547-687566	Msa1042950:five_prime_UTR	30.0%
ATTATGGTGAATTTAAGCAC+TGG	+	chr7_2:687592-687611	Msa1042950:five_prime_UTR	30.0%
AGTTGAGCTTAATTAATGGT+TGG	+	chr7_2:687885-687904	Msa1042950:intron	30.0%
ATAGCTGCAAAGATCTTAAT+TGG	+	chr7_2:687981-688000	Msa1042950:intron	30.0%
ATAAAAACACCCTTGGAAAA+AGG	-	chr7_2:688009-688028	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	687053	692040	687053	ID=Msa1042950;Name=Msa1042950
chr7_2	mRNA	687053	692040	687053	ID=Msa1042950-mRNA-1;Parent=Msa1042950;Name=Msa1042950-mRNA-1;_AED=0.07;_eAED=0.07;_QI=606\|0.9\|0.90\|1\|1\|1\|11\|227\|636
chr7_2	exon	687053	687761	687053	ID=Msa1042950-mRNA-1:exon:56;Parent=Msa1042950-mRNA-1
chr7_2	exon	688130	688262	688130	ID=Msa1042950-mRNA-1:exon:57;Parent=Msa1042950-mRNA-1
chr7_2	exon	688405	688476	688405	ID=Msa1042950-mRNA-1:exon:58;Parent=Msa1042950-mRNA-1
chr7_2	exon	688892	689035	688892	ID=Msa1042950-mRNA-1:exon:59;Parent=Msa1042950-mRNA-1
chr7_2	exon	689174	689245	689174	ID=Msa1042950-mRNA-1:exon:60;Parent=Msa1042950-mRNA-1
chr7_2	exon	689446	689505	689446	ID=Msa1042950-mRNA-1:exon:61;Parent=Msa1042950-mRNA-1
chr7_2	exon	689614	689708	689614	ID=Msa1042950-mRNA-1:exon:62;Parent=Msa1042950-mRNA-1
chr7_2	exon	689814	689960	689814	ID=Msa1042950-mRNA-1:exon:63;Parent=Msa1042950-mRNA-1
chr7_2	exon	690046	690387	690046	ID=Msa1042950-mRNA-1:exon:64;Parent=Msa1042950-mRNA-1
chr7_2	exon	690943	691367	690943	ID=Msa1042950-mRNA-1:exon:65;Parent=Msa1042950-mRNA-1
chr7_2	exon	691496	692040	691496	ID=Msa1042950-mRNA-1:exon:66;Parent=Msa1042950-mRNA-1
chr7_2	five_prime_UTR	687053	687658	687053	ID=Msa1042950-mRNA-1:five_prime_utr;Parent=Msa1042950-mRNA-1
chr7_2	CDS	687659	687761	687659	ID=Msa1042950-mRNA-1:cds;Parent=Msa1042950-mRNA-1
chr7_2	CDS	688130	688262	688130	ID=Msa1042950-mRNA-1:cds;Parent=Msa1042950-mRNA-1
chr7_2	CDS	688405	688476	688405	ID=Msa1042950-mRNA-1:cds;Parent=Msa1042950-mRNA-1
chr7_2	CDS	688892	689035	688892	ID=Msa1042950-mRNA-1:cds;Parent=Msa1042950-mRNA-1
chr7_2	CDS	689174	689245	689174	ID=Msa1042950-mRNA-1:cds;Parent=Msa1042950-mRNA-1
chr7_2	CDS	689446	689505	689446	ID=Msa1042950-mRNA-1:cds;Parent=Msa1042950-mRNA-1
chr7_2	CDS	689614	689708	689614	ID=Msa1042950-mRNA-1:cds;Parent=Msa1042950-mRNA-1
chr7_2	CDS	689814	689960	689814	ID=Msa1042950-mRNA-1:cds;Parent=Msa1042950-mRNA-1
chr7_2	CDS	690046	690387	690046	ID=Msa1042950-mRNA-1:cds;Parent=Msa1042950-mRNA-1
chr7_2	CDS	690943	691367	690943	ID=Msa1042950-mRNA-1:cds;Parent=Msa1042950-mRNA-1
chr7_2	CDS	691496	691813	691496	ID=Msa1042950-mRNA-1:cds;Parent=Msa1042950-mRNA-1
chr7_2	three_prime_UTR	691814	692040	691814	ID=Msa1042950-mRNA-1:three_prime_utr;Parent=Msa1042950-mRNA-1

Gene Sequence

>Msa1042950

ATGGAATTTTGTTGTTTGGTTTTGTGGTTACTTGGTTTGTTACTTCATGTGTTGATGAAGGTTTCTTCTGCTGCTCTTTCTCCTTCTGGCATAAACTATGAAGTTGTTGCTTTGATGGCTATAAAGAATGACTTGAATGATCCTCACAATGTTTTGGAGAATTGGGATATTAATTCTGTTGATCCATGCAGCTGGAGGATGATTACTTGTACTCTAGATGGTTCAGTTTCTGCACTGGGATTTCCTAGTCAGAACTTGTCTGGTACACTATCTCCAAGAATTGGAAACCTTACTAACTTGCAATCTGTGTTACTTCAGAATAATGCTATTTCTGGTCATATTCCAGCTGCAATAGGAAGCCTGGAAAAGCTTCAAACACTTGATCTCTCCAATAATGAATTTAGTGGCGAGATACCGAGTTCTCTAGGAGGCCTCAAGAACTTGAATTATTTGCGGATAAATAATAACAGCCTTACAGGAGCCTGCCCTCAGTCTCTTAGCAACATTGAAAGCTTAACCCTTGTGGACCTCTCCTACAACAATTTGAGCGGTTCGTTGCCAAGAATATCAGCAAGAACATTAAAGATTGTAGGTAACCCGTTAATATGCGGCCCAAAAGAAAACAATTGTTCTACCGTTTTGCCCGAGCCACTTTCCTTCCCACCAGATGCATTAAAAGCCAAACCTGACAGTGGTAAAAAAGGCCATCATGTAGCACTTGCTTTCGGTGCAAGTTTTGGTGCTGCTTTTGTCGTTGTAATTATAGTCGGGCTTCTTGTTTGGTGGCGGTATAGACACAATCAACAAATATTCTTTGATATCAGTGAGCATTACGACCCTGAAGTGCGCCTTGGTCATTTAAAAAGGTATTCATTCAAAGAGCTTCGTGCTGCAACCGACCATTTCAACTCAAAGAACATTCTAGGAAGAGGTGGTTTTGGAATAGTTTACAAGGCATGCTTGAATGACGGATCTGTTGTGGCTGTCAAAAGGTTAAAAGACTATAATGCAGCTGGTGGTGAGATCCAATTTCAAACCGAAGTTGAGACGATAAGTTTGGCTGTCCATCGGAATCTTCTGAGGCTTCGTGGGTTTTGCAGTACTCAGAATGAAAGACTCCTTGTTTATCCATACATGTCTAATGGAAGTGTAGCCTCTAGATTGAAAGATCATATTCATGGCCGACCAGCTTTGGATTGGACAAGGCGAAAGAGAATAGCTTTAGGTACAGCAAGAGGGTTGGTTTATTTGCACGAGCAATGTGACCCGAAAATTATCCATCGCGATGTCAAAGCAGCCAACATATTGCTAGATGAAGACTTCGAAGCAGTTGTTGGTGATTTCGGTCTAGCTAAGCTTTTAGATCATAGAGATACCCATGTGACCACTGCCGTGCGTGGCACCATTGGTCACATTGCTCCGGAGTACCTATCAACCGGTCAGTCTTCAGAAAAGACTGACGTGTTTGGGTATGGAATCTTGTTGCTTGAGCTTATCACAGGTCATAAGGCTTTAGATTTCGGTCGAGCAGCAAACCAGAAAGGCGTAATGCTTGATTGGGTACTCTCTTTCTCCCTGCTTTCACTCTTCTCGGTTAAGAAGCTACACCTGGAAGGAAAATTAAGTCAAATGGTAGATAAAGATCTGAAGGGAAACTTTGACATAGTTGAATTGGGAGAAATGGTTCAAGTAGCACTCTTGTGTACACAATTCAATCCGTCACACCGTCCGAAGATGTCAGAAGTATTAAAGATGTTGGAAGGGGACGGTTTAGCCGAGAAATGGGAGGCGTCTCAGAGGATCGAAACACCAAGGTTTCGGTTTTGCGAAAATCCGCCTCAAAGATATTCAGATTTTATAGAGGAATCATCGCTGATAGTAGAAGCAATGGAGCTTTCTGGCCCTAGGTGA

Protein sequence

>Msa1042950

MEFCCLVLWLLGLLLHVLMKVSSAALSPSGINYEVVALMAIKNDLNDPHNVLENWDINSVDPCSWRMITCTLDGSVSALGFPSQNLSGTLSPRIGNLTNLQSVLLQNNAISGHIPAAIGSLEKLQTLDLSNNEFSGEIPSSLGGLKNLNYLRINNNSLTGACPQSLSNIESLTLVDLSYNNLSGSLPRISARTLKIVGNPLICGPKENNCSTVLPEPLSFPPDALKAKPDSGKKGHHVALAFGASFGAAFVVVIIVGLLVWWRYRHNQQIFFDISEHYDPEVRLGHLKRYSFKELRAATDHFNSKNILGRGGFGIVYKACLNDGSVVAVKRLKDYNAAGGEIQFQTEVETISLAVHRNLLRLRGFCSTQNERLLVYPYMSNGSVASRLKDHIHGRPALDWTRRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDTHVTTAVRGTIGHIAPEYLSTGQSSEKTDVFGYGILLLELITGHKALDFGRAANQKGVMLDWVLSFSLLSLFSVKKLHLEGKLSQMVDKDLKGNFDIVELGEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAEKWEASQRIETPRFRFCENPPQRYSDFIEESSLIVEAMELSGPR*