AlfalfaGEDB | Msa1044690

M. sativa cultivar zhongmu-4 / Msa1044690

KEGG: -
GO: GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0016020 GO:0032501 GO:0032502 GO:0044464 GO:0048731 GO:0048856 GO:0071944 GO:0090696 GO:0099402
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1044690	XP_003612135.2	95.259	232	9	1	32	261	862	1093	1.70e-137	425

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1044690	sp\|C0LGS2\|Y4361_ARATH	81.385	231	42	1	32	261	868	1098	6.83e-123	379

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1044690	G7KGF1	95.259	232	9	1	32	261	862	1093	2.04e-137	424

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0735600	Msa1044690	0.949358	1.495528e-107	-8.615850e-47
Msa1044690	Msa1105670	0.941762	2.361262e-101	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1044690	MtrunA17_Chr5g0405191	95.259	232	9	1	32	261	862	1093	3.93e-141	424
Msa1044690	MtrunA17_Chr3g0142271	75.527	237	51	3	32	261	875	1111	8.38e-115	355
Msa1044690	MtrunA17_Chr3g0079661	45.972	211	102	6	45	249	957	1161	2.58e-44	159
Msa1044690	MtrunA17_Chr5g0413511	40.488	205	106	6	42	236	97	295	7.51e-44	152
Msa1044690	MtrunA17_Chr4g0035464	45.304	181	90	5	45	221	727	902	1.34e-42	154
Msa1044690	MtrunA17_Chr2g0313911	39.320	206	115	5	42	241	110	311	1.87e-42	148
Msa1044690	MtrunA17_Chr3g0129391	43.350	203	106	6	45	242	916	1114	1.80e-41	151
Msa1044690	MtrunA17_Chr7g0221191	40.594	202	108	5	38	233	429	624	1.95e-41	150
Msa1044690	MtrunA17_Chr4g0046511	38.053	226	125	6	38	258	732	947	3.49e-41	150
Msa1044690	MtrunA17_Chr1g0169841	40.404	198	105	6	37	229	848	1037	3.87e-41	150

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1044690	AT4G36180.1	81.385	231	42	1	32	261	868	1098	6.95e-124	379
Msa1044690	AT1G75640.1	74.783	230	57	1	30	258	865	1094	1.72e-109	341
Msa1044690	AT1G55610.1	46.500	200	98	5	45	237	900	1097	4.48e-46	165
Msa1044690	AT1G55610.2	46.500	200	98	5	45	237	900	1097	4.48e-46	165
Msa1044690	AT3G13380.1	45.226	199	101	4	45	237	899	1095	4.73e-45	162
Msa1044690	AT5G62710.2	41.905	210	112	5	42	245	316	521	2.25e-44	157
Msa1044690	AT5G62710.1	41.905	210	112	5	42	245	350	555	2.94e-44	157
Msa1044690	AT1G73080.1	40.271	221	115	7	41	250	866	1080	7.37e-43	155
Msa1044690	AT1G17750.1	43.915	189	95	6	41	224	833	1015	3.86e-42	154
Msa1044690	AT1G75820.1	44.199	181	92	6	45	221	734	909	5.13e-42	153

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Find 70 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAAATGCAATTTGAG+TGG	0.662473	7_2:-3349624	Msa1044690:CDS
AACACCAGTGAATAACAGAA+GGG	0.663886	7_2:+3349538	None:intergenic
AACGTCACCGTGGACCATTG+TGG	0.675394	7_2:+3349161	None:intergenic
AAGATGAAGACATTGTGAAG+TGG	0.660204	7_2:-3348897	Msa1044690:CDS
AAGATGGTCATGTTCTAAAT+TGG	0.307149	7_2:-3349242	Msa1044690:CDS
AAGCGCATTTATCAGATTTC+GGG	0.230025	7_2:-3349104	Msa1044690:CDS
AATTTAGAACATGACCATCT+TGG	0.453033	7_2:+3349244	None:intergenic
ACAACCCTTCTGTTATTCAC+TGG	0.494544	7_2:-3349542	Msa1044690:intron
ACATTGAAATACACCAAATC+AGG	0.441398	7_2:+3349573	None:intergenic
ACCACCAGATATGAGACTCT+TGG	0.548894	7_2:-3349322	Msa1044690:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGCATCATAGAAAAATTACT+AGG	+	chr7_2:3348795-3348814	None:intergenic	30.0%
ACATTGAAATACACCAAATC+AGG	+	chr7_2:3348816-3348835	None:intergenic	30.0%
GGCATCATAGAAAAATTACT+AGG	+	chr7_2:3348795-3348814	None:intergenic	30.0%
GGCATCATAGAAAAATTACT+AGG	+	chr7_2:3348795-3348814	None:intergenic	30.0%
ACATTGAAATACACCAAATC+AGG	+	chr7_2:3348816-3348835	None:intergenic	30.0%
GGCATCATAGAAAAATTACT+AGG	+	chr7_2:3348795-3348814	None:intergenic	30.0%
TTGGTGTATTTCAATGTGTC+AGG	-	chr7_2:3348819-3348838	Msa1044690:CDS	35.0%
TGGTGTATTTCAATGTGTCA+GGG	-	chr7_2:3348820-3348839	Msa1044690:CDS	35.0%
AACACCAGTGAATAACAGAA+GGG	+	chr7_2:3348851-3348870	None:intergenic	35.0%
TAACACCAGTGAATAACAGA+AGG	+	chr7_2:3348852-3348871	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	3348765	3349643	3348765	ID=Msa1044690;Name=Msa1044690
chr7_2	mRNA	3348765	3349643	3348765	ID=Msa1044690-mRNA-1;Parent=Msa1044690;Name=Msa1044690-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0\|0\|0\|1\|0\|0\|2\|0\|262
chr7_2	exon	3349543	3349643	3349543	ID=Msa1044690-mRNA-1:exon:878;Parent=Msa1044690-mRNA-1
chr7_2	exon	3348765	3349449	3348765	ID=Msa1044690-mRNA-1:exon:877;Parent=Msa1044690-mRNA-1
chr7_2	CDS	3349543	3349643	3349543	ID=Msa1044690-mRNA-1:cds;Parent=Msa1044690-mRNA-1
chr7_2	CDS	3348765	3349449	3348765	ID=Msa1044690-mRNA-1:cds;Parent=Msa1044690-mRNA-1

Gene Sequence

>Msa1044690

ATGAAATGCAATTTGAGTGGTGAAATTCCTAGTAATTTTTCTATGATGCCTGATTTGGTGTATTTCAATGTGTCAGGGAACAACCCTTCTGTTATTCACTGGCTCCCTGATGGATCATTAGATGAGAACATGTTCAGAAAGGAAGCTGAATCACTTGGCAAAATAAAGCACAGAAATTTAACCGTTCTCAGAGGTTACTATGCAAGACCACCAGATATGAGACTCTTGGCCTATGATTACATGCCCAATGGAAACCTTGCAACACTCCTCCAAGAAGCTTCTCACCAAGATGGTCATGTTCTAAATTGGCCAATGAGACACCTCATCGCACTAGGAATTGCCCGCGGATTAGCCTTCATACACCAATCCACAATGGTCCACGGTGACGTTAAACCTCAAAACGTTCTATTTGATGCAGATTTCGAAGCGCATTTATCAGATTTCGGGTTAGAAAGACTAACGGTACCCACATCAGGAGAAGCAGCCTCCACTTCAACATCATTTGGCACATTGGGTTATGTTTCACCAGAAGCAATCTTAACCAGGGGAATCACGAAAGAGTCTGATGTTTACAGCTTTGGCATTGTGTTGTTGGAACTTCTAACAGGAAAGAGACCAGTAATGTTCACACAAGATGAAGACATTGTGAAGTGGGTGAAGAAACAACTTCAAAGGGGTCAAATAACAGAGTTACTAGAACCTGGTTTACTTGAATTAGACCCAGAATCATCAGAATGGGAAGAGTTTTTACTAGGTGTGAAAGTTGGTTTGCTAGAGAAAGCTAGA

Protein sequence

>Msa1044690

MKCNLSGEIPSNFSMMPDLVYFNVSGNNPSVIHWLPDGSLDENMFRKEAESLGKIKHRNLTVLRGYYARPPDMRLLAYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFIHQSTMVHGDVKPQNVLFDADFEAHLSDFGLERLTVPTSGEAASTSTSFGTLGYVSPEAILTRGITKESDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLEKAR