Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1045770 | sp|C0SQ89|CMT3_ORYSJ | 45.361 | 194 | 83 | 5 | 39 | 216 | 110 | 296 | 2.78e-46 | 167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1045770 | A0A072UC70 | 86.957 | 253 | 29 | 2 | 1 | 249 | 1 | 253 | 2.00e-149 | 446 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094780 | Msa1045770 | 0.802283 | 6.038630e-49 | -8.615850e-47 |
| Msa1045770 | Msa1208950 | 0.801345 | 9.409328e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1045770 | MtrunA17_Chr6g0484831 | 86.957 | 253 | 29 | 2 | 1 | 249 | 1 | 253 | 3.85e-153 | 446 |
| Msa1045770 | MtrunA17_Chr7g0215341 | 89.157 | 249 | 23 | 1 | 1 | 249 | 1 | 245 | 9.33e-153 | 445 |
| Msa1045770 | MtrunA17_Chr5g0406641 | 88.189 | 254 | 25 | 3 | 1 | 249 | 1 | 254 | 7.78e-141 | 415 |
| Msa1045770 | MtrunA17_Chr4g0007641 | 65.370 | 257 | 76 | 5 | 1 | 244 | 1 | 257 | 2.00e-107 | 328 |
| Msa1045770 | MtrunA17_Chr6g0464681 | 54.135 | 266 | 99 | 6 | 1 | 243 | 1 | 266 | 6.23e-81 | 258 |
| Msa1045770 | MtrunA17_Chr6g0486931 | 44.500 | 200 | 91 | 5 | 57 | 239 | 146 | 342 | 6.95e-50 | 175 |
| Msa1045770 | MtrunA17_Chr8g0369361 | 39.175 | 194 | 100 | 6 | 57 | 233 | 9 | 201 | 4.90e-36 | 135 |
| Msa1045770 | MtrunA17_Chr8g0364091 | 56.098 | 82 | 32 | 2 | 125 | 202 | 37 | 118 | 5.89e-26 | 101 |
| Msa1045770 | MtrunA17_Chr5g0427871 | 48.077 | 104 | 45 | 2 | 57 | 151 | 38 | 141 | 8.57e-26 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1045770 | AT1G69770.1 | 37.647 | 255 | 126 | 7 | 1 | 233 | 1 | 244 | 1.31e-42 | 154 |
| Msa1045770 | AT4G19020.1 | 41.618 | 173 | 89 | 3 | 57 | 218 | 523 | 694 | 3.31e-41 | 150 |
| Msa1045770 | AT4G19020.2 | 41.618 | 173 | 89 | 3 | 57 | 218 | 475 | 646 | 3.62e-41 | 150 |
| Msa1045770 | AT1G80740.1 | 37.436 | 195 | 102 | 3 | 40 | 214 | 2 | 196 | 1.53e-39 | 145 |
Find 40 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGTCTCACTTTCTATTT+TGG | 0.212259 | 7_2:-5905787 | None:intergenic |
| TCAACACTTTCAAATGAATC+TGG | 0.268377 | 7_2:+5905807 | Msa1045770:CDS |
| TTCAATTTCTTTCTTCTAGA+AGG | 0.297640 | 7_2:-5904006 | None:intergenic |
| TTCTTCAACCGGAGATTGTT+TGG | 0.326628 | 7_2:-5903965 | None:intergenic |
| AACATTTGAGAAAGTTATAT+AGG | 0.344153 | 7_2:-5905647 | None:intergenic |
| ATCCTTTAGATTGTTTAGTT+AGG | 0.347736 | 7_2:+5905440 | Msa1045770:CDS |
| TGTGCTTCATCAGACGGAAT+AGG | 0.372094 | 7_2:-5904072 | None:intergenic |
| AGGAACGACTTCGTCTTGTT+TGG | 0.374277 | 7_2:-5903920 | None:intergenic |
| TTCAATCTTTACCGTGTCTT+CGG | 0.381407 | 7_2:-5905266 | None:intergenic |
| GTAAAATATTGTTCTTCATC+AGG | 0.390612 | 7_2:-5905223 | None:intergenic |
| TTGTTTGGCTTTCTTCCGTT+TGG | 0.415225 | 7_2:-5903950 | None:intergenic |
| ACATTTGAGAAAGTTATATA+GGG | 0.426320 | 7_2:-5905646 | None:intergenic |
| TTCCTAACTAAACAATCTAA+AGG | 0.433146 | 7_2:-5905442 | None:intergenic |
| TATCGTGAAGCGAAGGTTGA+TGG | 0.441672 | 7_2:+5904323 | Msa1045770:CDS |
| CTGATGAAGCACAAAAGAAA+TGG | 0.447307 | 7_2:+5904082 | Msa1045770:CDS |
| GAAACCAGTTCTTCTTCAAC+CGG | 0.452190 | 7_2:-5903976 | None:intergenic |
| AAAGAAATTGAAGCAATCTT+CGG | 0.454978 | 7_2:+5904017 | Msa1045770:CDS |
| ATCTCCGGTTGAAGAAGAAC+TGG | 0.462907 | 7_2:+5903972 | Msa1045770:CDS |
| CAACACTTTCAAATGAATCT+GGG | 0.470283 | 7_2:+5905808 | Msa1045770:CDS |
| TTCGGCTCTGTAAAACCATT+GGG | 0.476357 | 7_2:-5905248 | None:intergenic |
| TGTGTGTGTGCAGGTGATTA+AGG | 0.483671 | 7_2:+5905360 | Msa1045770:intron |
| TTTATCAGCTGCATGGACAT+TGG | 0.493693 | 7_2:-5905832 | None:intergenic |
| CTTCGGCTCTGTAAAACCAT+TGG | 0.499873 | 7_2:-5905249 | None:intergenic |
| CACAAAAGAAATGGCCTCAC+CGG | 0.507084 | 7_2:+5904091 | Msa1045770:CDS |
| TCCGACGATGCATGCTTCGT+CGG | 0.515548 | 7_2:+5904045 | Msa1045770:CDS |
| TCGTTCCTCATTCTTCCAAA+CGG | 0.526193 | 7_2:+5903935 | Msa1045770:CDS |
| GAAGAAAGCCAAACAATCTC+CGG | 0.530553 | 7_2:+5903957 | Msa1045770:CDS |
| TTCTTCCGTTTGGAAGAATG+AGG | 0.531258 | 7_2:-5903940 | None:intergenic |
| GAGTGAGGATGAAAGTTTGA+AGG | 0.536508 | 7_2:+5904289 | Msa1045770:CDS |
| ATCGTGAAGCGAAGGTTGAT+GGG | 0.542081 | 7_2:+5904324 | Msa1045770:CDS |
| CTCACTCGTTCTTAGTGTAC+CGG | 0.561833 | 7_2:-5904110 | None:intergenic |
| GGACTACATTGCTAAGATTG+TGG | 0.583306 | 7_2:+5905186 | Msa1045770:CDS |
| TCCGACGAAGCATGCATCGT+CGG | 0.593618 | 7_2:-5904046 | None:intergenic |
| TGCAGGTGATTAAGGACCAT+GGG | 0.609611 | 7_2:+5905368 | Msa1045770:intron |
| GTTTCACTATCGTGAAGCGA+AGG | 0.614568 | 7_2:+5904316 | Msa1045770:CDS |
| ACTTTCTCAAATGTTGACAA+TGG | 0.620113 | 7_2:+5905655 | Msa1045770:CDS |
| ATGTCAAAATAGAATTCACA+AGG | 0.670234 | 7_2:-5905610 | None:intergenic |
| GTGCAGGTGATTAAGGACCA+TGG | 0.674534 | 7_2:+5905367 | Msa1045770:intron |
| TCAAAATAGAATTCACAAGG+AGG | 0.689598 | 7_2:-5905607 | None:intergenic |
| TCGTTCTTAGTGTACCGGTG+AGG | 0.720228 | 7_2:-5904105 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAATCATATATAAAATAA+CGG | - | chr7_2:5904964-5904983 | None:intergenic | 10.0% |
| !! | TGAAATCATATATAAAATAA+CGG | - | chr7_2:5904964-5904983 | None:intergenic | 10.0% |
| !!! | TTTATTTCATGTTGAAATTT+TGG | + | chr7_2:5904437-5904456 | Msa1045770:intron | 15.0% |
| !!! | ATGTTGAAATTTTGTTTTTT+AGG | + | chr7_2:5904527-5904546 | Msa1045770:intron | 15.0% |
| !!! | TGTTGAAATTTTGTTTTTTA+GGG | + | chr7_2:5904528-5904547 | Msa1045770:intron | 15.0% |
| !!! | TGTTGTAAATTTTGTTTTTT+AGG | + | chr7_2:5904565-5904584 | Msa1045770:intron | 15.0% |
| !!! | GTTGTAAATTTTGTTTTTTA+GGG | + | chr7_2:5904566-5904585 | Msa1045770:intron | 15.0% |
| !!! | TTTTTTTTTTATGTTGATTG+TGG | + | chr7_2:5905742-5905761 | Msa1045770:intron | 15.0% |
| !!! | TTTATTTCATGTTGAAATTT+TGG | + | chr7_2:5904437-5904456 | Msa1045770:intron | 15.0% |
| !!! | ATGTTGAAATTTTGTTTTTT+AGG | + | chr7_2:5904527-5904546 | Msa1045770:intron | 15.0% |
| !!! | TGTTGAAATTTTGTTTTTTA+GGG | + | chr7_2:5904528-5904547 | Msa1045770:intron | 15.0% |
| !!! | TGTTGTAAATTTTGTTTTTT+AGG | + | chr7_2:5904565-5904584 | Msa1045770:intron | 15.0% |
| !!! | GTTGTAAATTTTGTTTTTTA+GGG | + | chr7_2:5904566-5904585 | Msa1045770:intron | 15.0% |
| !!! | TTTTTTTTTTATGTTGATTG+TGG | + | chr7_2:5905742-5905761 | Msa1045770:intron | 15.0% |
| !!! | AAAAAAAAGTATGAAATCCA+AGG | + | chr7_2:5904874-5904893 | Msa1045770:intron | 20.0% |
| !!! | TTTATGGTTATTGTTGATTT+TGG | + | chr7_2:5905328-5905347 | Msa1045770:intron | 20.0% |
| !!! | ATGTTGATTTTATATACTAC+AGG | + | chr7_2:5905564-5905583 | Msa1045770:intron | 20.0% |
| !! | ACATTTGAGAAAGTTATATA+GGG | - | chr7_2:5905649-5905668 | None:intergenic | 20.0% |
| !! | AACATTTGAGAAAGTTATAT+AGG | - | chr7_2:5905650-5905669 | None:intergenic | 20.0% |
| !!! | AAAAAAAAGTATGAAATCCA+AGG | + | chr7_2:5904874-5904893 | Msa1045770:intron | 20.0% |
| !!! | TTTATGGTTATTGTTGATTT+TGG | + | chr7_2:5905328-5905347 | Msa1045770:intron | 20.0% |
| !!! | ATGTTGATTTTATATACTAC+AGG | + | chr7_2:5905564-5905583 | Msa1045770:intron | 20.0% |
| !! | ACATTTGAGAAAGTTATATA+GGG | - | chr7_2:5905649-5905668 | None:intergenic | 20.0% |
| !! | AACATTTGAGAAAGTTATAT+AGG | - | chr7_2:5905650-5905669 | None:intergenic | 20.0% |
| ! | TTCAATTTCTTTCTTCTAGA+AGG | - | chr7_2:5904009-5904028 | None:intergenic | 25.0% |
| ! | AAAGAAATTGAAGCAATCTT+CGG | + | chr7_2:5904017-5904036 | Msa1045770:CDS | 25.0% |
| !!! | TGTTGAAATTTTGGTGTTTT+AGG | + | chr7_2:5904446-5904465 | Msa1045770:intron | 25.0% |
| !!! | GTTGAAATTTTGGTGTTTTA+GGG | + | chr7_2:5904447-5904466 | Msa1045770:intron | 25.0% |
| !! | TTCATTTCTTTGATTTCTTG+TGG | + | chr7_2:5904660-5904679 | Msa1045770:intron | 25.0% |
| ! | TTGATTTCTTGTGGAAAATT+TGG | + | chr7_2:5904669-5904688 | Msa1045770:intron | 25.0% |
| !! | CATGTTGAAAAATGTGTTTT+AGG | + | chr7_2:5904982-5905001 | Msa1045770:intron | 25.0% |
| ! | GTAAAATATTGTTCTTCATC+AGG | - | chr7_2:5905226-5905245 | None:intergenic | 25.0% |
| ! | ATCCTTTAGATTGTTTAGTT+AGG | + | chr7_2:5905440-5905459 | Msa1045770:CDS | 25.0% |
| ! | TTCCTAACTAAACAATCTAA+AGG | - | chr7_2:5905445-5905464 | None:intergenic | 25.0% |
| ! | ATGTCAAAATAGAATTCACA+AGG | - | chr7_2:5905613-5905632 | None:intergenic | 25.0% |
| ! | TTCAATTTCTTTCTTCTAGA+AGG | - | chr7_2:5904009-5904028 | None:intergenic | 25.0% |
| ! | AAAGAAATTGAAGCAATCTT+CGG | + | chr7_2:5904017-5904036 | Msa1045770:CDS | 25.0% |
| !!! | TGTTGAAATTTTGGTGTTTT+AGG | + | chr7_2:5904446-5904465 | Msa1045770:intron | 25.0% |
| !!! | GTTGAAATTTTGGTGTTTTA+GGG | + | chr7_2:5904447-5904466 | Msa1045770:intron | 25.0% |
| !! | TTCATTTCTTTGATTTCTTG+TGG | + | chr7_2:5904660-5904679 | Msa1045770:intron | 25.0% |
| ! | TTGATTTCTTGTGGAAAATT+TGG | + | chr7_2:5904669-5904688 | Msa1045770:intron | 25.0% |
| !! | CATGTTGAAAAATGTGTTTT+AGG | + | chr7_2:5904982-5905001 | Msa1045770:intron | 25.0% |
| ! | GTAAAATATTGTTCTTCATC+AGG | - | chr7_2:5905226-5905245 | None:intergenic | 25.0% |
| ! | ATCCTTTAGATTGTTTAGTT+AGG | + | chr7_2:5905440-5905459 | Msa1045770:CDS | 25.0% |
| ! | TTCCTAACTAAACAATCTAA+AGG | - | chr7_2:5905445-5905464 | None:intergenic | 25.0% |
| ! | ATGTCAAAATAGAATTCACA+AGG | - | chr7_2:5905613-5905632 | None:intergenic | 25.0% |
| ! | TAGGGTTTATTTCTTCATGT+TGG | + | chr7_2:5904584-5904603 | Msa1045770:intron | 30.0% |
| ! | GCTGAAAATTGTGTGTTTTA+TGG | + | chr7_2:5904637-5904656 | Msa1045770:intron | 30.0% |
| !!! | TGTATAGTGTTTTGATGAAG+CGG | + | chr7_2:5904847-5904866 | Msa1045770:intron | 30.0% |
| ! | TAGTAATTTGCCACATCATT+CGG | + | chr7_2:5904899-5904918 | Msa1045770:intron | 30.0% |
| ! | TGATGTGATGAATGTTGTTT+AGG | + | chr7_2:5905147-5905166 | Msa1045770:intron | 30.0% |
| ! | GATGTGATGAATGTTGTTTA+GGG | + | chr7_2:5905148-5905167 | Msa1045770:intron | 30.0% |
| ! | ATGTGATGAATGTTGTTTAG+GGG | + | chr7_2:5905149-5905168 | Msa1045770:intron | 30.0% |
| ! | AACAATATTTTACTGCCCAA+TGG | + | chr7_2:5905233-5905252 | Msa1045770:CDS | 30.0% |
| !!! | AACTCTTTCGTGTTTTGTTT+TGG | + | chr7_2:5905293-5905312 | Msa1045770:intron | 30.0% |
| !!! | ACTCTTTCGTGTTTTGTTTT+GGG | + | chr7_2:5905294-5905313 | Msa1045770:intron | 30.0% |
| TCAAAATAGAATTCACAAGG+AGG | - | chr7_2:5905610-5905629 | None:intergenic | 30.0% | |
| ACTTTCTCAAATGTTGACAA+TGG | + | chr7_2:5905655-5905674 | Msa1045770:CDS | 30.0% | |
| ! | TGAAGTCTCACTTTCTATTT+TGG | - | chr7_2:5905790-5905809 | None:intergenic | 30.0% |
| TCAACACTTTCAAATGAATC+TGG | + | chr7_2:5905807-5905826 | Msa1045770:CDS | 30.0% | |
| CAACACTTTCAAATGAATCT+GGG | + | chr7_2:5905808-5905827 | Msa1045770:CDS | 30.0% | |
| ! | TAGGGTTTATTTCTTCATGT+TGG | + | chr7_2:5904584-5904603 | Msa1045770:intron | 30.0% |
| ! | GCTGAAAATTGTGTGTTTTA+TGG | + | chr7_2:5904637-5904656 | Msa1045770:intron | 30.0% |
| !!! | TGTATAGTGTTTTGATGAAG+CGG | + | chr7_2:5904847-5904866 | Msa1045770:intron | 30.0% |
| ! | TAGTAATTTGCCACATCATT+CGG | + | chr7_2:5904899-5904918 | Msa1045770:intron | 30.0% |
| ! | TGATGTGATGAATGTTGTTT+AGG | + | chr7_2:5905147-5905166 | Msa1045770:intron | 30.0% |
| ! | GATGTGATGAATGTTGTTTA+GGG | + | chr7_2:5905148-5905167 | Msa1045770:intron | 30.0% |
| ! | ATGTGATGAATGTTGTTTAG+GGG | + | chr7_2:5905149-5905168 | Msa1045770:intron | 30.0% |
| ! | AACAATATTTTACTGCCCAA+TGG | + | chr7_2:5905233-5905252 | Msa1045770:CDS | 30.0% |
| !!! | AACTCTTTCGTGTTTTGTTT+TGG | + | chr7_2:5905293-5905312 | Msa1045770:intron | 30.0% |
| !!! | ACTCTTTCGTGTTTTGTTTT+GGG | + | chr7_2:5905294-5905313 | Msa1045770:intron | 30.0% |
| TCAAAATAGAATTCACAAGG+AGG | - | chr7_2:5905610-5905629 | None:intergenic | 30.0% | |
| ACTTTCTCAAATGTTGACAA+TGG | + | chr7_2:5905655-5905674 | Msa1045770:CDS | 30.0% | |
| ! | TGAAGTCTCACTTTCTATTT+TGG | - | chr7_2:5905790-5905809 | None:intergenic | 30.0% |
| TCAACACTTTCAAATGAATC+TGG | + | chr7_2:5905807-5905826 | Msa1045770:CDS | 30.0% | |
| CAACACTTTCAAATGAATCT+GGG | + | chr7_2:5905808-5905827 | Msa1045770:CDS | 30.0% | |
| ! | TTCTTTTGTGCTTCATCAGA+CGG | - | chr7_2:5904081-5904100 | None:intergenic | 35.0% |
| CTGATGAAGCACAAAAGAAA+TGG | + | chr7_2:5904082-5904101 | Msa1045770:CDS | 35.0% | |
| ! | TGATGGGATTTTATATCAGC+TGG | + | chr7_2:5904340-5904359 | Msa1045770:CDS | 35.0% |
| ! | GTTTTGTGGTACAATCATTC+GGG | - | chr7_2:5904762-5904781 | None:intergenic | 35.0% |
| ! | CGTTTTGTGGTACAATCATT+CGG | - | chr7_2:5904763-5904782 | None:intergenic | 35.0% |
| ! | TAGCCAGTAAAAATTTTGCC+TGG | + | chr7_2:5904799-5904818 | Msa1045770:intron | 35.0% |
| TGTGGCAAATTACTATTCCT+TGG | - | chr7_2:5904894-5904913 | None:intergenic | 35.0% | |
| ! | AGTAATTTGCCACATCATTC+GGG | + | chr7_2:5904900-5904919 | Msa1045770:intron | 35.0% |
| ! | TGTGATGAATGTTGTTTAGG+GGG | + | chr7_2:5905150-5905169 | Msa1045770:intron | 35.0% |
| TTCAATCTTTACCGTGTCTT+CGG | - | chr7_2:5905269-5905288 | None:intergenic | 35.0% | |
| ! | TTTTGTCAACTAGATTCCCA+TGG | - | chr7_2:5905387-5905406 | None:intergenic | 35.0% |
| GGAATCTAGTTGACAAAAAG+AGG | + | chr7_2:5905389-5905408 | Msa1045770:CDS | 35.0% | |
| GCTGATAAAAATGCGGTTAA+AGG | + | chr7_2:5905846-5905865 | Msa1045770:CDS | 35.0% | |
| ! | TTCTTTTGTGCTTCATCAGA+CGG | - | chr7_2:5904081-5904100 | None:intergenic | 35.0% |
| CTGATGAAGCACAAAAGAAA+TGG | + | chr7_2:5904082-5904101 | Msa1045770:CDS | 35.0% | |
| ! | TGATGGGATTTTATATCAGC+TGG | + | chr7_2:5904340-5904359 | Msa1045770:CDS | 35.0% |
| ! | GTTTTGTGGTACAATCATTC+GGG | - | chr7_2:5904762-5904781 | None:intergenic | 35.0% |
| ! | CGTTTTGTGGTACAATCATT+CGG | - | chr7_2:5904763-5904782 | None:intergenic | 35.0% |
| ! | TAGCCAGTAAAAATTTTGCC+TGG | + | chr7_2:5904799-5904818 | Msa1045770:intron | 35.0% |
| TGTGGCAAATTACTATTCCT+TGG | - | chr7_2:5904894-5904913 | None:intergenic | 35.0% | |
| ! | AGTAATTTGCCACATCATTC+GGG | + | chr7_2:5904900-5904919 | Msa1045770:intron | 35.0% |
| ! | TGTGATGAATGTTGTTTAGG+GGG | + | chr7_2:5905150-5905169 | Msa1045770:intron | 35.0% |
| TTCAATCTTTACCGTGTCTT+CGG | - | chr7_2:5905269-5905288 | None:intergenic | 35.0% | |
| ! | TTTTGTCAACTAGATTCCCA+TGG | - | chr7_2:5905387-5905406 | None:intergenic | 35.0% |
| GGAATCTAGTTGACAAAAAG+AGG | + | chr7_2:5905389-5905408 | Msa1045770:CDS | 35.0% | |
| GCTGATAAAAATGCGGTTAA+AGG | + | chr7_2:5905846-5905865 | Msa1045770:CDS | 35.0% | |
| ! | GATTTACGAACGCGTTTTTG+AGG | - | chr7_2:5903898-5903917 | None:intergenic | 40.0% |
| TCGTTCCTCATTCTTCCAAA+CGG | + | chr7_2:5903935-5903954 | Msa1045770:CDS | 40.0% | |
| TTCTTCCGTTTGGAAGAATG+AGG | - | chr7_2:5903943-5903962 | None:intergenic | 40.0% | |
| !! | TTGTTTGGCTTTCTTCCGTT+TGG | - | chr7_2:5903953-5903972 | None:intergenic | 40.0% |
| GAAGAAAGCCAAACAATCTC+CGG | + | chr7_2:5903957-5903976 | Msa1045770:CDS | 40.0% | |
| TTCTTCAACCGGAGATTGTT+TGG | - | chr7_2:5903968-5903987 | None:intergenic | 40.0% | |
| GAAACCAGTTCTTCTTCAAC+CGG | - | chr7_2:5903979-5903998 | None:intergenic | 40.0% | |
| ! | GTTTTGTAGTGAATCGAGTG+AGG | + | chr7_2:5904274-5904293 | Msa1045770:intron | 40.0% |
| GAGTGAGGATGAAAGTTTGA+AGG | + | chr7_2:5904289-5904308 | Msa1045770:CDS | 40.0% | |
| ! | TGGGATTTTATATCAGCTGG+AGG | + | chr7_2:5904343-5904362 | Msa1045770:CDS | 40.0% |
| ! | GGAGGATAATGCTTTTGTCA+AGG | + | chr7_2:5904361-5904380 | Msa1045770:CDS | 40.0% |
| ! | TTCATTTCGCGAACGTTTTG+TGG | - | chr7_2:5904776-5904795 | None:intergenic | 40.0% |
| ! | CAGTAAAAATTTTGCCTGGC+CGG | + | chr7_2:5904803-5904822 | Msa1045770:intron | 40.0% |
| GGACTACATTGCTAAGATTG+TGG | + | chr7_2:5905186-5905205 | Msa1045770:CDS | 40.0% | |
| TTCGGCTCTGTAAAACCATT+GGG | - | chr7_2:5905251-5905270 | None:intergenic | 40.0% | |
| !! | TTGGGTTGCTTTGCTGTTTA+TGG | + | chr7_2:5905312-5905331 | Msa1045770:intron | 40.0% |
| TGATTTGAATGTGTGTGTGC+AGG | + | chr7_2:5905351-5905370 | Msa1045770:intron | 40.0% | |
| ! | CTACATGAAGCACTTACATC+AGG | - | chr7_2:5905490-5905509 | None:intergenic | 40.0% |
| TTTGGCAGCTGTATCAATCA+GGG | - | chr7_2:5905772-5905791 | None:intergenic | 40.0% | |
| ! | TTTTGGCAGCTGTATCAATC+AGG | - | chr7_2:5905773-5905792 | None:intergenic | 40.0% |
| TTTATCAGCTGCATGGACAT+TGG | - | chr7_2:5905835-5905854 | None:intergenic | 40.0% | |
| CCATGCAGCTGATAAAAATG+CGG | + | chr7_2:5905839-5905858 | Msa1045770:CDS | 40.0% | |
| ! | GATTTACGAACGCGTTTTTG+AGG | - | chr7_2:5903898-5903917 | None:intergenic | 40.0% |
| TCGTTCCTCATTCTTCCAAA+CGG | + | chr7_2:5903935-5903954 | Msa1045770:CDS | 40.0% | |
| TTCTTCCGTTTGGAAGAATG+AGG | - | chr7_2:5903943-5903962 | None:intergenic | 40.0% | |
| !! | TTGTTTGGCTTTCTTCCGTT+TGG | - | chr7_2:5903953-5903972 | None:intergenic | 40.0% |
| GAAGAAAGCCAAACAATCTC+CGG | + | chr7_2:5903957-5903976 | Msa1045770:CDS | 40.0% | |
| TTCTTCAACCGGAGATTGTT+TGG | - | chr7_2:5903968-5903987 | None:intergenic | 40.0% | |
| GAAACCAGTTCTTCTTCAAC+CGG | - | chr7_2:5903979-5903998 | None:intergenic | 40.0% | |
| ! | GTTTTGTAGTGAATCGAGTG+AGG | + | chr7_2:5904274-5904293 | Msa1045770:intron | 40.0% |
| GAGTGAGGATGAAAGTTTGA+AGG | + | chr7_2:5904289-5904308 | Msa1045770:CDS | 40.0% | |
| ! | TGGGATTTTATATCAGCTGG+AGG | + | chr7_2:5904343-5904362 | Msa1045770:CDS | 40.0% |
| ! | GGAGGATAATGCTTTTGTCA+AGG | + | chr7_2:5904361-5904380 | Msa1045770:CDS | 40.0% |
| ! | TTCATTTCGCGAACGTTTTG+TGG | - | chr7_2:5904776-5904795 | None:intergenic | 40.0% |
| ! | CAGTAAAAATTTTGCCTGGC+CGG | + | chr7_2:5904803-5904822 | Msa1045770:intron | 40.0% |
| GGACTACATTGCTAAGATTG+TGG | + | chr7_2:5905186-5905205 | Msa1045770:CDS | 40.0% | |
| TTCGGCTCTGTAAAACCATT+GGG | - | chr7_2:5905251-5905270 | None:intergenic | 40.0% | |
| !! | TTGGGTTGCTTTGCTGTTTA+TGG | + | chr7_2:5905312-5905331 | Msa1045770:intron | 40.0% |
| TGATTTGAATGTGTGTGTGC+AGG | + | chr7_2:5905351-5905370 | Msa1045770:intron | 40.0% | |
| ! | CTACATGAAGCACTTACATC+AGG | - | chr7_2:5905490-5905509 | None:intergenic | 40.0% |
| TTTGGCAGCTGTATCAATCA+GGG | - | chr7_2:5905772-5905791 | None:intergenic | 40.0% | |
| ! | TTTTGGCAGCTGTATCAATC+AGG | - | chr7_2:5905773-5905792 | None:intergenic | 40.0% |
| TTTATCAGCTGCATGGACAT+TGG | - | chr7_2:5905835-5905854 | None:intergenic | 40.0% | |
| CCATGCAGCTGATAAAAATG+CGG | + | chr7_2:5905839-5905858 | Msa1045770:CDS | 40.0% | |
| ! | AGGAACGACTTCGTCTTGTT+TGG | - | chr7_2:5903923-5903942 | None:intergenic | 45.0% |
| ATCTCCGGTTGAAGAAGAAC+TGG | + | chr7_2:5903972-5903991 | Msa1045770:CDS | 45.0% | |
| TGTGCTTCATCAGACGGAAT+AGG | - | chr7_2:5904075-5904094 | None:intergenic | 45.0% | |
| CACAAAAGAAATGGCCTCAC+CGG | + | chr7_2:5904091-5904110 | Msa1045770:CDS | 45.0% | |
| CTCACTCGTTCTTAGTGTAC+CGG | - | chr7_2:5904113-5904132 | None:intergenic | 45.0% | |
| GTTTCACTATCGTGAAGCGA+AGG | + | chr7_2:5904316-5904335 | Msa1045770:CDS | 45.0% | |
| TATCGTGAAGCGAAGGTTGA+TGG | + | chr7_2:5904323-5904342 | Msa1045770:CDS | 45.0% | |
| ! | ATCGTGAAGCGAAGGTTGAT+GGG | + | chr7_2:5904324-5904343 | Msa1045770:CDS | 45.0% |
| ! | CGGCCAGGCAAAATTTTTAC+TGG | - | chr7_2:5904805-5904824 | None:intergenic | 45.0% |
| AGCGAATGTGTATTCGCGAT+TGG | - | chr7_2:5904928-5904947 | None:intergenic | 45.0% | |
| ! | GATGAATGTTGTTTAGGGGG+AGG | + | chr7_2:5905153-5905172 | Msa1045770:intron | 45.0% |
| ! | AATGTTGTTTAGGGGGAGGA+AGG | + | chr7_2:5905157-5905176 | Msa1045770:intron | 45.0% |
| CTTCGGCTCTGTAAAACCAT+TGG | - | chr7_2:5905252-5905271 | None:intergenic | 45.0% | |
| ! | GTTTTACAGAGCCGAAGACA+CGG | + | chr7_2:5905255-5905274 | Msa1045770:CDS | 45.0% |
| TGTGTGTGTGCAGGTGATTA+AGG | + | chr7_2:5905360-5905379 | Msa1045770:intron | 45.0% | |
| TGCAGGTGATTAAGGACCAT+GGG | + | chr7_2:5905368-5905387 | Msa1045770:intron | 45.0% | |
| ! | CCGCATTTTTATCAGCTGCA+TGG | - | chr7_2:5905842-5905861 | None:intergenic | 45.0% |
| ! | AGGAACGACTTCGTCTTGTT+TGG | - | chr7_2:5903923-5903942 | None:intergenic | 45.0% |
| ATCTCCGGTTGAAGAAGAAC+TGG | + | chr7_2:5903972-5903991 | Msa1045770:CDS | 45.0% | |
| TGTGCTTCATCAGACGGAAT+AGG | - | chr7_2:5904075-5904094 | None:intergenic | 45.0% | |
| CACAAAAGAAATGGCCTCAC+CGG | + | chr7_2:5904091-5904110 | Msa1045770:CDS | 45.0% | |
| CTCACTCGTTCTTAGTGTAC+CGG | - | chr7_2:5904113-5904132 | None:intergenic | 45.0% | |
| GTTTCACTATCGTGAAGCGA+AGG | + | chr7_2:5904316-5904335 | Msa1045770:CDS | 45.0% | |
| TATCGTGAAGCGAAGGTTGA+TGG | + | chr7_2:5904323-5904342 | Msa1045770:CDS | 45.0% | |
| ! | ATCGTGAAGCGAAGGTTGAT+GGG | + | chr7_2:5904324-5904343 | Msa1045770:CDS | 45.0% |
| ! | CGGCCAGGCAAAATTTTTAC+TGG | - | chr7_2:5904805-5904824 | None:intergenic | 45.0% |
| AGCGAATGTGTATTCGCGAT+TGG | - | chr7_2:5904928-5904947 | None:intergenic | 45.0% | |
| ! | GATGAATGTTGTTTAGGGGG+AGG | + | chr7_2:5905153-5905172 | Msa1045770:intron | 45.0% |
| ! | AATGTTGTTTAGGGGGAGGA+AGG | + | chr7_2:5905157-5905176 | Msa1045770:intron | 45.0% |
| CTTCGGCTCTGTAAAACCAT+TGG | - | chr7_2:5905252-5905271 | None:intergenic | 45.0% | |
| ! | GTTTTACAGAGCCGAAGACA+CGG | + | chr7_2:5905255-5905274 | Msa1045770:CDS | 45.0% |
| TGTGTGTGTGCAGGTGATTA+AGG | + | chr7_2:5905360-5905379 | Msa1045770:intron | 45.0% | |
| TGCAGGTGATTAAGGACCAT+GGG | + | chr7_2:5905368-5905387 | Msa1045770:intron | 45.0% | |
| ! | CCGCATTTTTATCAGCTGCA+TGG | - | chr7_2:5905842-5905861 | None:intergenic | 45.0% |
| ! | TCGTTCTTAGTGTACCGGTG+AGG | - | chr7_2:5904108-5904127 | None:intergenic | 50.0% |
| ! | TTTTGCCTGGCCGGAAATCA+TGG | + | chr7_2:5904812-5904831 | Msa1045770:intron | 50.0% |
| TTTGCCTGGCCGGAAATCAT+GGG | + | chr7_2:5904813-5904832 | Msa1045770:intron | 50.0% | |
| ! | CGATTGGTTCCCGAATGATG+TGG | - | chr7_2:5904912-5904931 | None:intergenic | 50.0% |
| TTAGGGGGAGGAAGGAAAAG+AGG | + | chr7_2:5905165-5905184 | Msa1045770:intron | 50.0% | |
| GTGCAGGTGATTAAGGACCA+TGG | + | chr7_2:5905367-5905386 | Msa1045770:intron | 50.0% | |
| ! | TCGTTCTTAGTGTACCGGTG+AGG | - | chr7_2:5904108-5904127 | None:intergenic | 50.0% |
| ! | TTTTGCCTGGCCGGAAATCA+TGG | + | chr7_2:5904812-5904831 | Msa1045770:intron | 50.0% |
| TTTGCCTGGCCGGAAATCAT+GGG | + | chr7_2:5904813-5904832 | Msa1045770:intron | 50.0% | |
| ! | CGATTGGTTCCCGAATGATG+TGG | - | chr7_2:5904912-5904931 | None:intergenic | 50.0% |
| TTAGGGGGAGGAAGGAAAAG+AGG | + | chr7_2:5905165-5905184 | Msa1045770:intron | 50.0% | |
| GTGCAGGTGATTAAGGACCA+TGG | + | chr7_2:5905367-5905386 | Msa1045770:intron | 50.0% | |
| TCCGACGATGCATGCTTCGT+CGG | + | chr7_2:5904045-5904064 | Msa1045770:CDS | 55.0% | |
| TCCGACGAAGCATGCATCGT+CGG | - | chr7_2:5904049-5904068 | None:intergenic | 55.0% | |
| TTGCCTGGCCGGAAATCATG+GGG | + | chr7_2:5904814-5904833 | Msa1045770:intron | 55.0% | |
| ACCCACCACCCCATGATTTC+CGG | - | chr7_2:5904825-5904844 | None:intergenic | 55.0% | |
| TCCGACGATGCATGCTTCGT+CGG | + | chr7_2:5904045-5904064 | Msa1045770:CDS | 55.0% | |
| TCCGACGAAGCATGCATCGT+CGG | - | chr7_2:5904049-5904068 | None:intergenic | 55.0% | |
| TTGCCTGGCCGGAAATCATG+GGG | + | chr7_2:5904814-5904833 | Msa1045770:intron | 55.0% | |
| ACCCACCACCCCATGATTTC+CGG | - | chr7_2:5904825-5904844 | None:intergenic | 55.0% | |
| GCCGGAAATCATGGGGTGGT+GGG | + | chr7_2:5904821-5904840 | Msa1045770:intron | 60.0% | |
| GCCGGAAATCATGGGGTGGT+GGG | + | chr7_2:5904821-5904840 | Msa1045770:intron | 60.0% | |
| CCACCCCATGATTTCCGGCC+AGG | - | chr7_2:5904820-5904839 | None:intergenic | 65.0% | |
| CCTGGCCGGAAATCATGGGG+TGG | + | chr7_2:5904817-5904836 | Msa1045770:intron | 65.0% | |
| GGCCGGAAATCATGGGGTGG+TGG | + | chr7_2:5904820-5904839 | Msa1045770:intron | 65.0% | |
| CCACCCCATGATTTCCGGCC+AGG | - | chr7_2:5904820-5904839 | None:intergenic | 65.0% | |
| CCTGGCCGGAAATCATGGGG+TGG | + | chr7_2:5904817-5904836 | Msa1045770:intron | 65.0% | |
| GGCCGGAAATCATGGGGTGG+TGG | + | chr7_2:5904820-5904839 | Msa1045770:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 5903892 | 5905875 | 5903892 | ID=Msa1045770;Name=Msa1045770 |
| chr7_2 | mRNA | 5903892 | 5905875 | 5903892 | ID=Msa1045770-mRNA-1;Parent=Msa1045770;Name=Msa1045770-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.66|1|1|1|6|0|249 |
| chr7_2 | exon | 5903892 | 5904127 | 5903892 | ID=Msa1045770-mRNA-1:exon:1280;Parent=Msa1045770-mRNA-1 |
| chr7_2 | exon | 5904283 | 5904382 | 5904283 | ID=Msa1045770-mRNA-1:exon:1281;Parent=Msa1045770-mRNA-1 |
| chr7_2 | exon | 5905169 | 5905276 | 5905169 | ID=Msa1045770-mRNA-1:exon:1282;Parent=Msa1045770-mRNA-1 |
| chr7_2 | exon | 5905373 | 5905492 | 5905373 | ID=Msa1045770-mRNA-1:exon:1283;Parent=Msa1045770-mRNA-1 |
| chr7_2 | exon | 5905586 | 5905676 | 5905586 | ID=Msa1045770-mRNA-1:exon:1284;Parent=Msa1045770-mRNA-1 |
| chr7_2 | exon | 5905784 | 5905875 | 5905784 | ID=Msa1045770-mRNA-1:exon:1285;Parent=Msa1045770-mRNA-1 |
| chr7_2 | CDS | 5903892 | 5904127 | 5903892 | ID=Msa1045770-mRNA-1:cds;Parent=Msa1045770-mRNA-1 |
| chr7_2 | CDS | 5904283 | 5904382 | 5904283 | ID=Msa1045770-mRNA-1:cds;Parent=Msa1045770-mRNA-1 |
| chr7_2 | CDS | 5905169 | 5905276 | 5905169 | ID=Msa1045770-mRNA-1:cds;Parent=Msa1045770-mRNA-1 |
| chr7_2 | CDS | 5905373 | 5905492 | 5905373 | ID=Msa1045770-mRNA-1:cds;Parent=Msa1045770-mRNA-1 |
| chr7_2 | CDS | 5905586 | 5905676 | 5905586 | ID=Msa1045770-mRNA-1:cds;Parent=Msa1045770-mRNA-1 |
| chr7_2 | CDS | 5905784 | 5905875 | 5905784 | ID=Msa1045770-mRNA-1:cds;Parent=Msa1045770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
