AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1046040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 99 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTAATTCTATATGTAATT+TGG 0.113702 7_2:-6375499 Msa1046040:three_prime_UTR
TCCATCCATGTTGCATTAAT+TGG 0.147680 7_2:+6375619 None:intergenic
TGAGGAACTCAAACAATTTA+AGG 0.163299 7_2:-6376459 Msa1046040:CDS
GAATTTCAAATTCGAATTTA+TGG 0.182017 7_2:-6377699 Msa1046040:five_prime_UTR
GTCCACAATCACATTTAAAT+TGG 0.209735 7_2:+6375906 None:intergenic
ATTATATATATCAATGTATT+TGG 0.214681 7_2:-6375405 Msa1046040:three_prime_UTR
TTGCGGGTCCATGGAGAATT+TGG 0.235128 7_2:-6380089 Msa1046040:five_prime_UTR
GGGTGAATTTAGGACTAAAT+AGG 0.238968 7_2:-6376712 Msa1046040:CDS
GTGAACTCCTTGAACATTTC+CGG 0.239784 7_2:+6378589 None:intergenic
GCTTACGAGAGGGTGAATTT+AGG 0.294219 7_2:-6376722 Msa1046040:CDS
GTCAGGGTCGGCGCGTTTCA+TGG 0.308268 7_2:-6379979 Msa1046040:five_prime_UTR
GGTGAATTTAGGACTAAATA+GGG 0.309034 7_2:-6376711 Msa1046040:CDS
TCCTTGTTTGTGTTTGTTGC+CGG 0.322987 7_2:+6379580 None:intergenic
TCACATTTAAATTGGCCATT+TGG 0.332786 7_2:+6375914 None:intergenic
AGAGTACCTTTGATTGTGTC+AGG 0.339380 7_2:-6379996 Msa1046040:five_prime_UTR
GACCAAGCATTTGACATTGT+TGG 0.343423 7_2:+6376515 None:intergenic
GACAAGCAGTAAAAGTTTAT+CGG 0.363077 7_2:+6380019 None:intergenic
TGAAAACTTTCTTCTGATAC+AGG 0.377739 7_2:+6377672 None:intergenic
CATAGTGACAATTACAGAAT+TGG 0.378131 7_2:+6375567 None:intergenic
CAATCTGTTTCAGCTTGAAT+AGG 0.382751 7_2:+6379645 None:intergenic
GAGGGAAAACCCTTGCAAAT+TGG 0.399141 7_2:+6380173 None:intergenic
ACAATGTCAAATGCTTGGTC+TGG 0.403543 7_2:-6376512 Msa1046040:CDS
TTCCTCAAGTCCCTCTAGTT+AGG 0.416195 7_2:+6377719 None:intergenic
AAATCCATAGCGTCTCTTGC+GGG 0.439000 7_2:-6380105 Msa1046040:five_prime_UTR
TTGCAAAACTTCTTCATGAC+CGG 0.453391 7_2:-6379599 Msa1046040:five_prime_UTR
TTGCAAATTGGTCGATCTAC+AGG 0.455816 7_2:+6380185 None:intergenic
TCCATGGAGAATTTGGTGTC+AGG 0.459130 7_2:-6380082 Msa1046040:five_prime_UTR
CATCATGACTGAACTTTACA+AGG 0.461612 7_2:-6375993 Msa1046040:three_prime_UTR
AGGTACAAATTTCCAATTGT+AGG 0.463626 7_2:-6375764 Msa1046040:three_prime_UTR
AAATTGTTTGAGTTCCTCAA+TGG 0.471669 7_2:+6376463 None:intergenic
CTCCAACAATGTCAAATGCT+TGG 0.473618 7_2:-6376517 Msa1046040:CDS
GCTAAAATTAAGCCACCCTC+AGG 0.476976 7_2:-6376657 Msa1046040:intron
ACAAGCAGTAAAAGTTTATC+GGG 0.477726 7_2:+6380020 None:intergenic
CTATTCAAGCTGAAACAGAT+TGG 0.478401 7_2:-6379644 Msa1046040:five_prime_UTR
TAGTGGTTAATGAAATCTGA+TGG 0.484600 7_2:-6375682 Msa1046040:three_prime_UTR
CAATGTCAAATGCTTGGTCT+GGG 0.486270 7_2:-6376511 Msa1046040:CDS
TAGCGTCTCTTGCGGGTCCA+TGG 0.489160 7_2:-6380098 Msa1046040:five_prime_UTR
CAAGGTCCACCATGACTGTA+AGG 0.490493 7_2:+6380053 None:intergenic
ATGATTTGATAAAATTAACT+TGG 0.492727 7_2:+6375650 None:intergenic
AACTGAACGTTCGTGGGTAG+AGG 0.492865 7_2:+6380154 None:intergenic
CAAATCCATAGCGTCTCTTG+CGG 0.495008 7_2:-6380106 Msa1046040:five_prime_UTR
ATGAGAAAGAACATAAATAG+TGG 0.495321 7_2:-6375699 Msa1046040:three_prime_UTR
GAACTTTACAAGGTCATTCA+CGG 0.497509 7_2:-6375983 Msa1046040:three_prime_UTR
GTTTCAGCTTGAATAGGAGA+TGG 0.499512 7_2:+6379651 None:intergenic
CAAGTCCCTCTAGCGAGGCT+TGG 0.500252 7_2:+6376800 None:intergenic
TATTCAAGCTGAAACAGATT+GGG 0.504544 7_2:-6379643 Msa1046040:five_prime_UTR
ATCAATAAATCTTACAAGGA+AGG 0.508505 7_2:-6380229 Msa1046040:five_prime_UTR
ATTTGAAAACTGAACGTTCG+TGG 0.514927 7_2:+6380147 None:intergenic
TGAACATTTCCGGTGCACTA+AGG 0.516804 7_2:+6378599 None:intergenic
AGGAAGGCTAAAACTCCAAA+TGG 0.517189 7_2:-6375929 Msa1046040:three_prime_UTR
ACCTTTGATTGTGTCAGGGT+CGG 0.518796 7_2:-6379991 Msa1046040:five_prime_UTR
TAGTGCACCGGAAATGTTCA+AGG 0.520766 7_2:-6378596 Msa1046040:five_prime_UTR
TCCAATTAATGCAACATGGA+TGG 0.520892 7_2:-6375620 Msa1046040:three_prime_UTR
CATTTGACATTGTTGGAGCA+TGG 0.525905 7_2:+6376522 None:intergenic
TAATGCAACATGGATGGACT+TGG 0.527685 7_2:-6375614 Msa1046040:three_prime_UTR
TATTAATGATGATTCCATTG+AGG 0.530317 7_2:-6376477 Msa1046040:CDS
AGGGTGAATTTCACATGAAG+TGG 0.535164 7_2:-6376827 Msa1046040:five_prime_UTR
GGCCAATTTAAATGTGATTG+TGG 0.541689 7_2:-6375908 Msa1046040:three_prime_UTR
TTTCAGCTTGAATAGGAGAT+GGG 0.542088 7_2:+6379652 None:intergenic
TGGACCCGCAAGAGACGCTA+TGG 0.556214 7_2:+6380101 None:intergenic
CCCTGACACCAAATTCTCCA+TGG 0.556606 7_2:+6380081 None:intergenic
CCATGGAGAATTTGGTGTCA+GGG 0.559924 7_2:-6380081 Msa1046040:five_prime_UTR
TTTACAAGGTCATTCACGGT+TGG 0.567292 7_2:-6375979 Msa1046040:three_prime_UTR
AAGGCTTTACTATTCTTCGA+AGG 0.573698 7_2:-6380210 Msa1046040:five_prime_UTR
AACTCAAACAATTTAAGGAA+AGG 0.573878 7_2:-6376454 Msa1046040:intron
GAGTATCAATAAATCTTACA+AGG 0.582088 7_2:-6380233 Msa1046040:five_prime_UTR
GCAGAGCAACCTTAGTGCAC+CGG 0.586537 7_2:-6378608 Msa1046040:intron
GTGAATTTAGGACTAAATAG+GGG 0.588267 7_2:-6376710 Msa1046040:CDS
AGGGTAGATCCTTACAGTCA+TGG 0.589537 7_2:-6380062 Msa1046040:five_prime_UTR
TCATCAACATTAGCATCACC+TGG 0.591889 7_2:-6379240 Msa1046040:intron
CACTTCTGTCAATGAGATTG+TGG 0.596935 7_2:-6375590 Msa1046040:three_prime_UTR
TTTGAAAACTGAACGTTCGT+GGG 0.600541 7_2:+6380148 None:intergenic
GAGAACCAAGCCTCGCTAGA+GGG 0.603704 7_2:-6376805 Msa1046040:five_prime_UTR
GCAGTAAAAGTTTATCGGGA+AGG 0.604212 7_2:+6380024 None:intergenic
AGTGGTTAATGAAATCTGAT+GGG 0.604425 7_2:-6375681 Msa1046040:three_prime_UTR
TTATCGGGAAGGAGCGAGCA+AGG 0.605530 7_2:+6380035 None:intergenic
ACTGAACGTTCGTGGGTAGA+GGG 0.607686 7_2:+6380155 None:intergenic
GTAGATCGACCAATTTGCAA+GGG 0.609149 7_2:-6380182 Msa1046040:five_prime_UTR
TGTAGATCGACCAATTTGCA+AGG 0.610342 7_2:-6380183 Msa1046040:five_prime_UTR
CAAGCTGAAACAGATTGGGT+AGG 0.611478 7_2:-6379639 Msa1046040:five_prime_UTR
GAGTACCTTTGATTGTGTCA+GGG 0.614624 7_2:-6379995 Msa1046040:five_prime_UTR
GTTTATACTAAACCTGAGGG+TGG 0.620466 7_2:+6376645 None:intergenic
ACCGGCAACAAACACAAACA+AGG 0.627964 7_2:-6379581 Msa1046040:five_prime_UTR
ACTCTCCAATTAATGCAACA+TGG 0.635926 7_2:-6375624 Msa1046040:three_prime_UTR
CTCCTCAAGTCCCTCTAGCG+AGG 0.636119 7_2:+6376795 None:intergenic
GGAGAACCAAGCCTCGCTAG+AGG 0.636432 7_2:-6376806 Msa1046040:five_prime_UTR
AATGTCAAATTGCAGGCTTG+GGG 0.640848 7_2:-6376547 Msa1046040:intron
AGCCTAACTAGAGGGACTTG+AGG 0.643226 7_2:-6377721 Msa1046040:five_prime_UTR
AGCCTCGCTAGAGGGACTTG+AGG 0.646190 7_2:-6376797 Msa1046040:five_prime_UTR
GAGAACTAAGCCTAACTAGA+GGG 0.649306 7_2:-6377729 Msa1046040:five_prime_UTR
ACAGCTGCACTAAATGCACC+AGG 0.652832 7_2:-6375949 Msa1046040:three_prime_UTR
AGGTGATGCTAATGTTGATG+AGG 0.665671 7_2:+6379242 None:intergenic
GGAGAACTAAGCCTAACTAG+AGG 0.665818 7_2:-6377730 Msa1046040:five_prime_UTR
CTGCACTAAATGCACCAGGA+AGG 0.665837 7_2:-6375945 Msa1046040:three_prime_UTR
GCCGACCCTGACACAATCAA+AGG 0.668703 7_2:+6379990 None:intergenic
AAATGTTCAAGGAGTTCACA+TGG 0.681365 7_2:-6378585 Msa1046040:intron
GTAGATCCTTACAGTCATGG+TGG 0.717900 7_2:-6380059 Msa1046040:five_prime_UTR
AGGGTCGGCGCGTTTCATGG+CGG 0.720488 7_2:-6379976 Msa1046040:five_prime_UTR
GGCAACAAACACAAACAAGG+AGG 0.739402 7_2:-6379578 Msa1046040:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCATGAATAAAAAAAAA+AGG + chr7_2:6376416-6376435 None:intergenic 10.0%
!! AAAATAATAGTAGTAATATA+TGG + chr7_2:6378174-6378193 None:intergenic 10.0%
!!! AAAATTGATTTATGTTTAAT+TGG + chr7_2:6379193-6379212 None:intergenic 10.0%
!! ATTATATATATCAATGTATT+TGG - chr7_2:6380213-6380232 Msa1046040:five_prime_UTR 10.0%
!! ATGAATAAAAAAAAAAGGAA+GGG + chr7_2:6376411-6376430 None:intergenic 15.0%
!!! TTTTTATATATACATGTCAT+CGG - chr7_2:6376801-6376820 Msa1046040:five_prime_UTR 15.0%
!! ATATATGTAAAATTGTTCTA+CGG - chr7_2:6377268-6377287 Msa1046040:intron 15.0%
!!! CTTTATACAATATGAATTTT+TGG - chr7_2:6377504-6377523 Msa1046040:intron 15.0%
!!! TACAAACTTTTTATTAAAGT+AGG + chr7_2:6377609-6377628 None:intergenic 15.0%
!! TCTTGAAATAATAGAAAATT+TGG + chr7_2:6377716-6377735 None:intergenic 15.0%
!! AGAAAAATAGTAGTAATATA+TGG + chr7_2:6378255-6378274 None:intergenic 15.0%
!! AATAAAAACTTTCATCTATT+AGG + chr7_2:6378873-6378892 None:intergenic 15.0%
!!! TAATAGATGAAAGTTTTTAT+TGG - chr7_2:6378872-6378891 Msa1046040:intron 15.0%
!!! CTTTTTATTTATAGCTTTTT+GGG - chr7_2:6379367-6379386 Msa1046040:intron 15.0%
!! CTAAATTAATAATAGAGAAT+TGG + chr7_2:6379428-6379447 None:intergenic 15.0%
!! CTGTTATTATTATTATTACA+AGG - chr7_2:6379567-6379586 Msa1046040:intron 15.0%
!! ATGATTTGATAAAATTAACT+TGG + chr7_2:6379971-6379990 None:intergenic 15.0%
!! TACTAATTCTATATGTAATT+TGG - chr7_2:6380119-6380138 Msa1046040:five_prime_UTR 15.0%
!!! TTTTTTATTGATAAACTCAT+TGG - chr7_2:6380169-6380188 Msa1046040:five_prime_UTR 15.0%
!! ACTGACAAATTAAATAAACA+GGG + chr7_2:6375734-6375753 None:intergenic 20.0%
!! TACTGACAAATTAAATAAAC+AGG + chr7_2:6375735-6375754 None:intergenic 20.0%
!!! TTGTTTTTATCTACTTTTGT+AGG - chr7_2:6375922-6375941 Msa1046040:three_prime_UTR 20.0%
!!! ATTCTGAAATTGAGAATTAA+GGG + chr7_2:6376089-6376108 None:intergenic 20.0%
!!! TATTCTGAAATTGAGAATTA+AGG + chr7_2:6376090-6376109 None:intergenic 20.0%
!!! ATATGATTTTGTTCTTTCAA+AGG - chr7_2:6376107-6376126 Msa1046040:intron 20.0%
!! CATGAATAAAAAAAAAAGGA+AGG + chr7_2:6376412-6376431 None:intergenic 20.0%
!! TCTGATTAAAACAATAAAGA+AGG + chr7_2:6376688-6376707 None:intergenic 20.0%
!!! TATTTCTAAGTTTTCTCAAA+AGG - chr7_2:6376716-6376735 Msa1046040:CDS 20.0%
!! TACAAATATTTGCTTTACTT+TGG + chr7_2:6376769-6376788 None:intergenic 20.0%
!! TAAAGCAAATATTTGTAGTA+TGG - chr7_2:6376772-6376791 Msa1046040:five_prime_UTR 20.0%
!! AACGATGTAAATCAAAATAA+AGG + chr7_2:6376861-6376880 None:intergenic 20.0%
!!! TATTTTGATTTACATCGTTA+TGG - chr7_2:6376862-6376881 Msa1046040:intron 20.0%
!! CATATTATAAAAAAACATGC+AGG + chr7_2:6376991-6377010 None:intergenic 20.0%
!! CAAATAAAACATATTTCCTA+TGG - chr7_2:6377377-6377396 Msa1046040:intron 20.0%
!!! AAAAGTGTATAATAGTAAGT+AGG + chr7_2:6377647-6377666 None:intergenic 20.0%
!! GAATTTCAAATTCGAATTTA+TGG - chr7_2:6377919-6377938 Msa1046040:intron 20.0%
!!! TGAATTTTGAGTAATGTTTA+AGG + chr7_2:6378140-6378159 None:intergenic 20.0%
!! AAAGAGTAAGTGTTTATAAA+AGG - chr7_2:6378301-6378320 Msa1046040:intron 20.0%
!! AAAAGGAAAACATTTAGTAT+TGG - chr7_2:6378318-6378337 Msa1046040:intron 20.0%
!! AAAGGAAAACATTTAGTATT+GGG - chr7_2:6378319-6378338 Msa1046040:intron 20.0%
!! AAAGTTGTAGAAATTTATCT+GGG + chr7_2:6378359-6378378 None:intergenic 20.0%
!! TAAAGTTGTAGAAATTTATC+TGG + chr7_2:6378360-6378379 None:intergenic 20.0%
!! AGAAATAAAAGATGAAATCA+AGG + chr7_2:6378597-6378616 None:intergenic 20.0%
!!! TTGATTTCATCTTTTATTTC+TGG - chr7_2:6378596-6378615 Msa1046040:five_prime_UTR 20.0%
!!! ACAATTTTCAGAGTTTTTAA+TGG + chr7_2:6379027-6379046 None:intergenic 20.0%
!!! TTAAAAACTCTGAAAATTGT+AGG - chr7_2:6379027-6379046 Msa1046040:intron 20.0%
!! CCAAAAAGCTATAAATAAAA+AGG + chr7_2:6379369-6379388 None:intergenic 20.0%
!!! CCTTTTTATTTATAGCTTTT+TGG - chr7_2:6379366-6379385 Msa1046040:intron 20.0%
!!! CTTTTTACTTGTTCAATTTA+TGG + chr7_2:6379514-6379533 None:intergenic 20.0%
!!! CATGTATATTTTTTTACCTT+GGG + chr7_2:6379757-6379776 None:intergenic 20.0%
!!! ACATGTATATTTTTTTACCT+TGG + chr7_2:6379758-6379777 None:intergenic 20.0%
! GAGTATCAATAAATCTTACA+AGG - chr7_2:6375385-6375404 Msa1046040:three_prime_UTR 25.0%
! ATCAATAAATCTTACAAGGA+AGG - chr7_2:6375389-6375408 Msa1046040:three_prime_UTR 25.0%
! AAGGAACTCAATTATTCATA+TGG + chr7_2:6375710-6375729 None:intergenic 25.0%
! CTGACAAATTAAATAAACAG+GGG + chr7_2:6375733-6375752 None:intergenic 25.0%
!! GAAGTTTTGCAAATTCTTTT+TGG + chr7_2:6376011-6376030 None:intergenic 25.0%
! ACACAAAACATGAGAAAAAA+TGG + chr7_2:6376142-6376161 None:intergenic 25.0%
! TCAGATTTATTTGAAAAGAG+AGG - chr7_2:6376547-6376566 Msa1046040:intron 25.0%
! CAGATTTATTTGAAAAGAGA+GGG - chr7_2:6376548-6376567 Msa1046040:intron 25.0%
! CTGAACATACTCATAATAAA+AGG + chr7_2:6377087-6377106 None:intergenic 25.0%
!! TGCTATTAGTATTTCTATCT+TGG - chr7_2:6377108-6377127 Msa1046040:intron 25.0%
! GTGATTTCATTTATGAATGA+TGG - chr7_2:6377130-6377149 Msa1046040:intron 25.0%
! ACAAAACTGACATAATAGTT+TGG - chr7_2:6377219-6377238 Msa1046040:intron 25.0%
! CCATAAGAATTTAACCTAAA+CGG + chr7_2:6377457-6377476 None:intergenic 25.0%
!! CATATTTGTGAATTTTGAAC+TGG + chr7_2:6377779-6377798 None:intergenic 25.0%
! TGCAATAAAAAACAACAACA+TGG + chr7_2:6377855-6377874 None:intergenic 25.0%
!! TATCAGAAGAAAGTTTTCAT+TGG - chr7_2:6377950-6377969 Msa1046040:intron 25.0%
!!! TTATTTTATTGCTCAAGTAG+AGG - chr7_2:6378187-6378206 Msa1046040:intron 25.0%
! CTGTTAATGTCTTTCAATAA+TGG + chr7_2:6378229-6378248 None:intergenic 25.0%
!! AAAGATGAAATCAAGGATTT+TGG + chr7_2:6378590-6378609 None:intergenic 25.0%
!!! TTCATCTTTTATTTCTGGAT+CGG - chr7_2:6378601-6378620 Msa1046040:five_prime_UTR 25.0%
! ATAGTTTATACTAAACCTGA+GGG + chr7_2:6378979-6378998 None:intergenic 25.0%
! AATAGTTTATACTAAACCTG+AGG + chr7_2:6378980-6378999 None:intergenic 25.0%
!! GAGTTTTTAATGGTTGTAAA+TGG + chr7_2:6379017-6379036 None:intergenic 25.0%
! TATTAATGATGATTCCATTG+AGG - chr7_2:6379141-6379160 Msa1046040:intron 25.0%
! AACTCAAACAATTTAAGGAA+AGG - chr7_2:6379164-6379183 Msa1046040:intron 25.0%
! AGACTTAGAATTGTGTTAAT+TGG - chr7_2:6379475-6379494 Msa1046040:intron 25.0%
! TTGATAAAAAGACCTACAAT+TGG + chr7_2:6379869-6379888 None:intergenic 25.0%
! ATGAGAAAGAACATAAATAG+TGG - chr7_2:6379919-6379938 Msa1046040:intron 25.0%
!! GTAATTGTCACTATGTTTTA+AGG - chr7_2:6380059-6380078 Msa1046040:five_prime_UTR 25.0%
!!! TATGTTTTAAGGACTAACTT+GGG - chr7_2:6380070-6380089 Msa1046040:five_prime_UTR 25.0%
ACAAGCAGTAAAAGTTTATC+GGG + chr7_2:6375601-6375620 None:intergenic 30.0%
GACAAGCAGTAAAAGTTTAT+CGG + chr7_2:6375602-6375621 None:intergenic 30.0%
CAAATTAAATAAACAGGGGA+AGG + chr7_2:6375729-6375748 None:intergenic 30.0%
ACAGAAAACTAAAATGCAGA+GGG + chr7_2:6375824-6375843 None:intergenic 30.0%
AACAGAAAACTAAAATGCAG+AGG + chr7_2:6375825-6375844 None:intergenic 30.0%
! TAGTTTTCTGTTTGTGAACT+TGG - chr7_2:6375833-6375852 Msa1046040:intron 30.0%
TATTCAAGCTGAAACAGATT+GGG - chr7_2:6375975-6375994 Msa1046040:three_prime_UTR 30.0%
CTTGCATGTTAGTTGAAATT+AGG + chr7_2:6376583-6376602 None:intergenic 30.0%
! AAGGAGTTGAAATCTTTTCA+TGG - chr7_2:6376735-6376754 Msa1046040:CDS 30.0%
! AGGAGTTGAAATCTTTTCAT+GGG - chr7_2:6376736-6376755 Msa1046040:CDS 30.0%
! TGACATAATAGTTTGGAACT+TGG - chr7_2:6377226-6377245 Msa1046040:intron 30.0%
! GACATAATAGTTTGGAACTT+GGG - chr7_2:6377227-6377246 Msa1046040:intron 30.0%
ATGTAAAATTGTTCTACGGA+AGG - chr7_2:6377272-6377291 Msa1046040:intron 30.0%
TGTAAAATTGTTCTACGGAA+GGG - chr7_2:6377273-6377292 Msa1046040:intron 30.0%
TTAGAAGCAGGTTAATTTAG+TGG + chr7_2:6377342-6377361 None:intergenic 30.0%
GGCAATCTAGTACTATAAAA+CGG + chr7_2:6377436-6377455 None:intergenic 30.0%
! CCGTTTAGGTTAAATTCTTA+TGG - chr7_2:6377454-6377473 Msa1046040:intron 30.0%
TTATGGAACGACAATAGATA+TGG - chr7_2:6377471-6377490 Msa1046040:intron 30.0%
ACAGGGTATGAAATATAACA+AGG - chr7_2:6377557-6377576 Msa1046040:intron 30.0%
! TTTCAAGAATCCTTTTATGC+TGG - chr7_2:6377728-6377747 Msa1046040:five_prime_UTR 30.0%
TGAAAACTTTCTTCTGATAC+AGG + chr7_2:6377949-6377968 None:intergenic 30.0%
TATAAGCATAGTTGTCAAAG+CGG - chr7_2:6377977-6377996 Msa1046040:intron 30.0%
TTGACAACTATGCTTATAAG+AGG - chr7_2:6378771-6378790 Msa1046040:intron 30.0%
TGACAACTATGCTTATAAGA+GGG - chr7_2:6378772-6378791 Msa1046040:intron 30.0%
! GGTGAATTTAGGACTAAATA+GGG - chr7_2:6378907-6378926 Msa1046040:intron 30.0%
! GTGAATTTAGGACTAAATAG+GGG - chr7_2:6378908-6378927 Msa1046040:intron 30.0%
AATTTGACATTGTTGGAGAA+TGG + chr7_2:6379062-6379081 None:intergenic 30.0%
! AAATTGTTTGAGTTCCTCAA+TGG + chr7_2:6379158-6379177 None:intergenic 30.0%
TGAGGAACTCAAACAATTTA+AGG - chr7_2:6379159-6379178 Msa1046040:intron 30.0%
! ACAAGCATCACAATTTTCAA+AGG - chr7_2:6379274-6379293 Msa1046040:five_prime_UTR 30.0%
CAAACAATAGCTTCAATAAC+AGG + chr7_2:6379303-6379322 None:intergenic 30.0%
TTGAAGCTATTGTTTGTGAA+AGG - chr7_2:6379307-6379326 Msa1046040:intron 30.0%
TCACATTTAAATTGGCCATT+TGG + chr7_2:6379707-6379726 None:intergenic 30.0%
GTCCACAATCACATTTAAAT+TGG + chr7_2:6379715-6379734 None:intergenic 30.0%
TATACATGTCTTTGTGCTTA+TGG - chr7_2:6379769-6379788 Msa1046040:intron 30.0%
! ACTTGATTCGATAATTGACA+TGG - chr7_2:6379814-6379833 Msa1046040:intron 30.0%
AGGTACAAATTTCCAATTGT+AGG - chr7_2:6379854-6379873 Msa1046040:intron 30.0%
! TGTAGGTCTTTTTATCAAGT+AGG - chr7_2:6379871-6379890 Msa1046040:intron 30.0%
TAGTGGTTAATGAAATCTGA+TGG - chr7_2:6379936-6379955 Msa1046040:intron 30.0%
AGTGGTTAATGAAATCTGAT+GGG - chr7_2:6379937-6379956 Msa1046040:intron 30.0%
CATAGTGACAATTACAGAAT+TGG + chr7_2:6380054-6380073 None:intergenic 30.0%
!!! CTATGTTTTAAGGACTAACT+TGG - chr7_2:6380069-6380088 Msa1046040:five_prime_UTR 30.0%
AAGGCTTTACTATTCTTCGA+AGG - chr7_2:6375408-6375427 Msa1046040:three_prime_UTR 35.0%
TTTGAAAACTGAACGTTCGT+GGG + chr7_2:6375473-6375492 None:intergenic 35.0%
ATTTGAAAACTGAACGTTCG+TGG + chr7_2:6375474-6375493 None:intergenic 35.0%
! ACGTTCAGTTTTCAAATTGC+TGG - chr7_2:6375477-6375496 Msa1046040:three_prime_UTR 35.0%
! CTGCATTATTTCTTGCTTGT+GGG - chr7_2:6375680-6375699 Msa1046040:three_prime_UTR 35.0%
! TGCATTATTTCTTGCTTGTG+GGG - chr7_2:6375681-6375700 Msa1046040:three_prime_UTR 35.0%
AATCGCTTGATTCTTTGTTC+TGG - chr7_2:6375862-6375881 Msa1046040:intron 35.0%
ATCGCTTGATTCTTTGTTCT+GGG - chr7_2:6375863-6375882 Msa1046040:intron 35.0%
! TTGATTCTTTGTTCTGGGTA+TGG - chr7_2:6375868-6375887 Msa1046040:intron 35.0%
TTTCAGCTTGAATAGGAGAT+GGG + chr7_2:6375969-6375988 None:intergenic 35.0%
CAATCTGTTTCAGCTTGAAT+AGG + chr7_2:6375976-6375995 None:intergenic 35.0%
CTATTCAAGCTGAAACAGAT+TGG - chr7_2:6375974-6375993 Msa1046040:three_prime_UTR 35.0%
TTGCAAAACTTCTTCATGAC+CGG - chr7_2:6376019-6376038 Msa1046040:intron 35.0%
ATTTACCAATCTATGTGTGC+AGG + chr7_2:6376496-6376515 None:intergenic 35.0%
AAGCAATAAGCAGATATGTG+TGG + chr7_2:6376658-6376677 None:intergenic 35.0%
TTTACATCGTTATGGACCTA+TGG - chr7_2:6376870-6376889 Msa1046040:intron 35.0%
AAATGTTCAAGGAGTTCACA+TGG - chr7_2:6377033-6377052 Msa1046040:intron 35.0%
ATGGTTGAAGTTGCTATCAT+TGG - chr7_2:6377310-6377329 Msa1046040:intron 35.0%
ATTAACCTGCTTCTAATGCT+TGG - chr7_2:6377346-6377365 Msa1046040:intron 35.0%
! ATAGTACTAGATTGCCGTTT+AGG - chr7_2:6377440-6377459 Msa1046040:intron 35.0%
TTTGGATTGCCTTTGTCATT+AGG - chr7_2:6377522-6377541 Msa1046040:intron 35.0%
AACCTAAGTCCTAATGACAA+AGG + chr7_2:6377534-6377553 None:intergenic 35.0%
! ATTAGGACTTAGGTTGTTAC+AGG - chr7_2:6377539-6377558 Msa1046040:intron 35.0%
! TTAGGACTTAGGTTGTTACA+GGG - chr7_2:6377540-6377559 Msa1046040:intron 35.0%
! GAATTTTGAACTGGCAGAAA+GGG + chr7_2:6377770-6377789 None:intergenic 35.0%
! TGAATTTTGAACTGGCAGAA+AGG + chr7_2:6377771-6377790 None:intergenic 35.0%
GCATCATTTGAAGGATTTGA+AGG + chr7_2:6377833-6377852 None:intergenic 35.0%
AACAACATGGCATCATTTGA+AGG + chr7_2:6377842-6377861 None:intergenic 35.0%
TAGTTGTCAAAGCGGAAATT+CGG - chr7_2:6377985-6378004 Msa1046040:intron 35.0%
TAGAAAGAGAAAGAGAGAAG+CGG + chr7_2:6378427-6378446 None:intergenic 35.0%
AAGAAGAAGAAGACAGATCA+AGG + chr7_2:6378502-6378521 None:intergenic 35.0%
!! TTTTTATTGGTGCTTACGAG+AGG - chr7_2:6378885-6378904 Msa1046040:intron 35.0%
!! TTTTATTGGTGCTTACGAGA+GGG - chr7_2:6378886-6378905 Msa1046040:intron 35.0%
! GGGTGAATTTAGGACTAAAT+AGG - chr7_2:6378906-6378925 Msa1046040:intron 35.0%
! AACTCTGAAAATTGTAGGCT+TGG - chr7_2:6379032-6379051 Msa1046040:intron 35.0%
! ACTCTGAAAATTGTAGGCTT+GGG - chr7_2:6379033-6379052 Msa1046040:intron 35.0%
CATCATGACTGAACTTTACA+AGG - chr7_2:6379625-6379644 Msa1046040:five_prime_UTR 35.0%
GAACTTTACAAGGTCATTCA+CGG - chr7_2:6379635-6379654 Msa1046040:five_prime_UTR 35.0%
GGCCAATTTAAATGTGATTG+TGG - chr7_2:6379710-6379729 Msa1046040:intron 35.0%
! TTGTGGACAAGTTTTTGAAC+AGG - chr7_2:6379727-6379746 Msa1046040:intron 35.0%
TGTGCTTATGGATATCATGA+TGG - chr7_2:6379781-6379800 Msa1046040:intron 35.0%
! TGGTAGTTTCTTTTGTTCAC+AGG - chr7_2:6379834-6379853 Msa1046040:intron 35.0%
ACTCTCCAATTAATGCAACA+TGG - chr7_2:6379994-6380013 Msa1046040:five_prime_UTR 35.0%
TCCAATTAATGCAACATGGA+TGG - chr7_2:6379998-6380017 Msa1046040:five_prime_UTR 35.0%
TCCATCCATGTTGCATTAAT+TGG + chr7_2:6380002-6380021 None:intergenic 35.0%
!! GGAATAATCGAAGCATTTTC+TGG - chr7_2:6380190-6380209 Msa1046040:five_prime_UTR 35.0%
TTGCAAATTGGTCGATCTAC+AGG + chr7_2:6375436-6375455 None:intergenic 40.0%
TGTAGATCGACCAATTTGCA+AGG - chr7_2:6375435-6375454 Msa1046040:three_prime_UTR 40.0%
GTAGATCGACCAATTTGCAA+GGG - chr7_2:6375436-6375455 Msa1046040:three_prime_UTR 40.0%
GCAGTAAAAGTTTATCGGGA+AGG + chr7_2:6375597-6375616 None:intergenic 40.0%
! AGAGTACCTTTGATTGTGTC+AGG - chr7_2:6375622-6375641 Msa1046040:three_prime_UTR 40.0%
GAGTACCTTTGATTGTGTCA+GGG - chr7_2:6375623-6375642 Msa1046040:three_prime_UTR 40.0%
! GCTGCATTATTTCTTGCTTG+TGG - chr7_2:6375679-6375698 Msa1046040:three_prime_UTR 40.0%
TTGTCAGTAGCAGTTATGTG+TGG - chr7_2:6375746-6375765 Msa1046040:three_prime_UTR 40.0%
GTTTCAGCTTGAATAGGAGA+TGG + chr7_2:6375970-6375989 None:intergenic 40.0%
! TCCTTGTTTGTGTTTGTTGC+CGG + chr7_2:6376041-6376060 None:intergenic 40.0%
AGGTGATGCTAATGTTGATG+AGG + chr7_2:6376379-6376398 None:intergenic 40.0%
TCATCAACATTAGCATCACC+TGG - chr7_2:6376378-6376397 Msa1046040:intron 40.0%
CAATCTATGTGTGCAGGATA+CGG + chr7_2:6376490-6376509 None:intergenic 40.0%
GTGAACTCCTTGAACATTTC+CGG + chr7_2:6377032-6377051 None:intergenic 40.0%
AAAATTGTTCTACGGAAGGG+AGG - chr7_2:6377276-6377295 Msa1046040:intron 40.0%
AGTGAAAGGGTTGAATCCAT+AGG + chr7_2:6377396-6377415 None:intergenic 40.0%
TATAAAACGGCTGAGACAGT+GGG + chr7_2:6377423-6377442 None:intergenic 40.0%
TGCCTTTGTCATTAGGACTT+AGG - chr7_2:6377529-6377548 Msa1046040:intron 40.0%
GCAGTAAAGTCCAGCATAAA+AGG + chr7_2:6377741-6377760 None:intergenic 40.0%
GAGAACTAAGCCTAACTAGA+GGG - chr7_2:6377889-6377908 Msa1046040:intron 40.0%
AGAAATTTATCTGGGCCCTA+GGG + chr7_2:6378351-6378370 None:intergenic 40.0%
TAGAAATTTATCTGGGCCCT+AGG + chr7_2:6378352-6378371 None:intergenic 40.0%
AGGAAGACTGTCATCAAACT+AGG + chr7_2:6378384-6378403 None:intergenic 40.0%
AGGAATGAAGATGAAACGCA+TGG + chr7_2:6378476-6378495 None:intergenic 40.0%
AAGAAGACAGATCAAGGATG+AGG + chr7_2:6378496-6378515 None:intergenic 40.0%
GAGAGAGAAGTAGAAATGCA+TGG + chr7_2:6378532-6378551 None:intergenic 40.0%
TGCCGAAAAAAACGCTATCT+CGG - chr7_2:6378723-6378742 Msa1046040:intron 40.0%
AGGGTGAATTTCACATGAAG+TGG - chr7_2:6378791-6378810 Msa1046040:intron 40.0%
GTTTATACTAAACCTGAGGG+TGG + chr7_2:6378976-6378995 None:intergenic 40.0%
! CTCTGAAAATTGTAGGCTTG+GGG - chr7_2:6379034-6379053 Msa1046040:intron 40.0%
CTCCAACAATGTCAAATTGC+AGG - chr7_2:6379064-6379083 Msa1046040:intron 40.0%
AGCCTGCAATTTGACATTGT+TGG + chr7_2:6379069-6379088 None:intergenic 40.0%
ACAATGTCAAATTGCAGGCT+TGG - chr7_2:6379069-6379088 Msa1046040:intron 40.0%
CAATGTCAAATTGCAGGCTT+GGG - chr7_2:6379070-6379089 Msa1046040:intron 40.0%
AATGTCAAATTGCAGGCTTG+GGG - chr7_2:6379071-6379090 Msa1046040:intron 40.0%
CATTTGACATTGTTGGAGCA+TGG + chr7_2:6379099-6379118 None:intergenic 40.0%
CTCCAACAATGTCAAATGCT+TGG - chr7_2:6379101-6379120 Msa1046040:intron 40.0%
GACCAAGCATTTGACATTGT+TGG + chr7_2:6379106-6379125 None:intergenic 40.0%
ACAATGTCAAATGCTTGGTC+TGG - chr7_2:6379106-6379125 Msa1046040:intron 40.0%
CAATGTCAAATGCTTGGTCT+GGG - chr7_2:6379107-6379126 Msa1046040:intron 40.0%
AGCTATTGTTTGTGAAAGGC+AGG - chr7_2:6379311-6379330 Msa1046040:intron 40.0%
!! TCAGAGTGTGATTTTCAAGC+AGG - chr7_2:6379402-6379421 Msa1046040:intron 40.0%
TTTACAAGGTCATTCACGGT+TGG - chr7_2:6379639-6379658 Msa1046040:five_prime_UTR 40.0%
!! ATTTGGAGTTTTAGCCTTCC+TGG + chr7_2:6379690-6379709 None:intergenic 40.0%
AGGAAGGCTAAAACTCCAAA+TGG - chr7_2:6379689-6379708 Msa1046040:intron 40.0%
! TTTTTGAACAGGCAATCCCA+AGG - chr7_2:6379738-6379757 Msa1046040:intron 40.0%
! TAATGCAACATGGATGGACT+TGG - chr7_2:6380004-6380023 Msa1046040:five_prime_UTR 40.0%
CACTTCTGTCAATGAGATTG+TGG - chr7_2:6380028-6380047 Msa1046040:five_prime_UTR 40.0%
GAGGGAAAACCCTTGCAAAT+TGG + chr7_2:6375448-6375467 None:intergenic 45.0%
CAAATCCATAGCGTCTCTTG+CGG - chr7_2:6375512-6375531 Msa1046040:three_prime_UTR 45.0%
AAATCCATAGCGTCTCTTGC+GGG - chr7_2:6375513-6375532 Msa1046040:three_prime_UTR 45.0%
!! TCCATGGAGAATTTGGTGTC+AGG - chr7_2:6375536-6375555 Msa1046040:three_prime_UTR 45.0%
!! CCATGGAGAATTTGGTGTCA+GGG - chr7_2:6375537-6375556 Msa1046040:three_prime_UTR 45.0%
AGGGTAGATCCTTACAGTCA+TGG - chr7_2:6375556-6375575 Msa1046040:three_prime_UTR 45.0%
GTAGATCCTTACAGTCATGG+TGG - chr7_2:6375559-6375578 Msa1046040:three_prime_UTR 45.0%
ACCTTTGATTGTGTCAGGGT+CGG - chr7_2:6375627-6375646 Msa1046040:three_prime_UTR 45.0%
CAAGCTGAAACAGATTGGGT+AGG - chr7_2:6375979-6375998 Msa1046040:three_prime_UTR 45.0%
ACCGGCAACAAACACAAACA+AGG - chr7_2:6376037-6376056 Msa1046040:intron 45.0%
GGCAACAAACACAAACAAGG+AGG - chr7_2:6376040-6376059 Msa1046040:intron 45.0%
!! AAAAGGAAGGGCATCAAACC+AGG + chr7_2:6376399-6376418 None:intergenic 45.0%
CGTATCCTGCACACATAGAT+TGG - chr7_2:6376488-6376507 Msa1046040:CDS 45.0%
CTAGTCGTCTACATCACCAT+AGG + chr7_2:6376889-6376908 None:intergenic 45.0%
TGAACATTTCCGGTGCACTA+AGG + chr7_2:6377022-6377041 None:intergenic 45.0%
TAGTGCACCGGAAATGTTCA+AGG - chr7_2:6377022-6377041 Msa1046040:intron 45.0%
AAGGGAGGAAAGTGGCATAA+TGG - chr7_2:6377291-6377310 Msa1046040:intron 45.0%
TCTCACCAAGCATTAGAAGC+AGG + chr7_2:6377354-6377373 None:intergenic 45.0%
GACAGTGGGATACAGTGAAA+GGG + chr7_2:6377409-6377428 None:intergenic 45.0%
AGACAGTGGGATACAGTGAA+AGG + chr7_2:6377410-6377429 None:intergenic 45.0%
CTATAAAACGGCTGAGACAG+TGG + chr7_2:6377424-6377443 None:intergenic 45.0%
TTATTGCACGTCACATGCAG+TGG - chr7_2:6377867-6377886 Msa1046040:intron 45.0%
GGAGAACTAAGCCTAACTAG+AGG - chr7_2:6377888-6377907 Msa1046040:intron 45.0%
TTCCTCAAGTCCCTCTAGTT+AGG + chr7_2:6377902-6377921 None:intergenic 45.0%
CTTCCTTCTTTCCTCATGTG+CGG - chr7_2:6378398-6378417 Msa1046040:intron 45.0%
GCTGGAAGAAGAAGAAGACA+GGG + chr7_2:6378454-6378473 None:intergenic 45.0%
ATGAAGATGAAACGCATGGC+TGG + chr7_2:6378472-6378491 None:intergenic 45.0%
GAGAAGTAGAAATGCATGGC+TGG + chr7_2:6378528-6378547 None:intergenic 45.0%
GCCGAAAAAAACGCTATCTC+GGG - chr7_2:6378724-6378743 Msa1046040:intron 45.0%
!!! GCCCGAGATAGCGTTTTTTT+CGG + chr7_2:6378728-6378747 None:intergenic 45.0%
GCTTACGAGAGGGTGAATTT+AGG - chr7_2:6378896-6378915 Msa1046040:intron 45.0%
GCTAAAATTAAGCCACCCTC+AGG - chr7_2:6378961-6378980 Msa1046040:intron 45.0%
ACTGAACGTTCGTGGGTAGA+GGG + chr7_2:6375466-6375485 None:intergenic 50.0%
AACTGAACGTTCGTGGGTAG+AGG + chr7_2:6375467-6375486 None:intergenic 50.0%
TTGCGGGTCCATGGAGAATT+TGG - chr7_2:6375529-6375548 Msa1046040:three_prime_UTR 50.0%
CCCTGACACCAAATTCTCCA+TGG + chr7_2:6375540-6375559 None:intergenic 50.0%
CAAGGTCCACCATGACTGTA+AGG + chr7_2:6375568-6375587 None:intergenic 50.0%
CGATGGAGCAAACACACACA+AGG + chr7_2:6375795-6375814 None:intergenic 50.0%
AATGCAGAGGGATGAGACGA+TGG + chr7_2:6375812-6375831 None:intergenic 50.0%
!! CAGGATACGGACTGGTCTTA+TGG + chr7_2:6376477-6376496 None:intergenic 50.0%
TATGTGTGCAGGATACGGAC+TGG + chr7_2:6376485-6376504 None:intergenic 50.0%
TTCTACGGAAGGGAGGAAAG+TGG - chr7_2:6377283-6377302 Msa1046040:intron 50.0%
AGCCTAACTAGAGGGACTTG+AGG - chr7_2:6377897-6377916 Msa1046040:intron 50.0%
! TAGTATTGGGCCTTAGCCCT+AGG - chr7_2:6378332-6378351 Msa1046040:intron 50.0%
! AGTATTGGGCCTTAGCCCTA+GGG - chr7_2:6378333-6378352 Msa1046040:intron 50.0%
GGCTGGAAGAAGAAGAAGAC+AGG + chr7_2:6378455-6378474 None:intergenic 50.0%
TGCTGTAGAGAGAGAGAGAG+AGG + chr7_2:6378566-6378585 None:intergenic 50.0%
! GCTTTTGACCGCATCAAGAC+CGG - chr7_2:6378625-6378644 Msa1046040:intron 50.0%
ACAGCTGCACTAAATGCACC+AGG - chr7_2:6379669-6379688 Msa1046040:five_prime_UTR 50.0%
CTGCACTAAATGCACCAGGA+AGG - chr7_2:6379673-6379692 Msa1046040:five_prime_UTR 50.0%
TTATCGGGAAGGAGCGAGCA+AGG + chr7_2:6375586-6375605 None:intergenic 55.0%
GCCGACCCTGACACAATCAA+AGG + chr7_2:6375631-6375650 None:intergenic 55.0%
GCAGAGCAACCTTAGTGCAC+CGG - chr7_2:6377010-6377029 Msa1046040:intron 55.0%
GTCAAAGCGGAAATTCGGCG+CGG - chr7_2:6377990-6378009 Msa1046040:intron 55.0%
GGCCACCCCAAAAATTGACG+CGG - chr7_2:6378016-6378035 Msa1046040:intron 55.0%
!! GCGGGCGATATTTGATGACG+CGG - chr7_2:6378058-6378077 Msa1046040:intron 55.0%
TTATCTGGGCCCTAGGGCTA+AGG + chr7_2:6378345-6378364 None:intergenic 55.0%
CAGCCGCACATGAGGAAAGA+AGG + chr7_2:6378404-6378423 None:intergenic 55.0%
!! GTGGTGGTAGCGGTCAATTG+CGG + chr7_2:6378671-6378690 None:intergenic 55.0%
AGCGTGTCTAGTGGTGGTAG+CGG + chr7_2:6378681-6378700 None:intergenic 55.0%
TACCACCACTAGACACGCTC+CGG - chr7_2:6378682-6378701 Msa1046040:intron 55.0%
GAGAACCAAGCCTCGCTAGA+GGG - chr7_2:6378813-6378832 Msa1046040:intron 55.0%
TGGACCCGCAAGAGACGCTA+TGG + chr7_2:6375520-6375539 None:intergenic 60.0%
TAGCGTCTCTTGCGGGTCCA+TGG - chr7_2:6375520-6375539 Msa1046040:three_prime_UTR 60.0%
!! CGCCGCGTCAATTTTTGGGG+TGG + chr7_2:6378021-6378040 None:intergenic 60.0%
! CCGCGCCGCGTCAATTTTTG+GGG + chr7_2:6378024-6378043 None:intergenic 60.0%
CCCCAAAAATTGACGCGGCG+CGG - chr7_2:6378021-6378040 Msa1046040:intron 60.0%
! CCCGCGCCGCGTCAATTTTT+GGG + chr7_2:6378025-6378044 None:intergenic 60.0%
CCCAAAAATTGACGCGGCGC+GGG - chr7_2:6378022-6378041 Msa1046040:intron 60.0%
! TCCCGCGCCGCGTCAATTTT+TGG + chr7_2:6378026-6378045 None:intergenic 60.0%
! ACCTCCGCGTTGATCTGTGC+CGG + chr7_2:6378704-6378723 None:intergenic 60.0%
GGAGAACCAAGCCTCGCTAG+AGG - chr7_2:6378812-6378831 Msa1046040:intron 60.0%
CAAGTCCCTCTAGCGAGGCT+TGG + chr7_2:6378821-6378840 None:intergenic 60.0%
AGCCTCGCTAGAGGGACTTG+AGG - chr7_2:6378821-6378840 Msa1046040:intron 60.0%
CTCCTCAAGTCCCTCTAGCG+AGG + chr7_2:6378826-6378845 None:intergenic 60.0%
GTCAGGGTCGGCGCGTTTCA+TGG - chr7_2:6375639-6375658 Msa1046040:three_prime_UTR 65.0%
AGGGTCGGCGCGTTTCATGG+CGG - chr7_2:6375642-6375661 Msa1046040:three_prime_UTR 65.0%
AATTGACGCGGCGCGGGATG+CGG - chr7_2:6378028-6378047 Msa1046040:intron 65.0%
AGAAGCGGCAGCCGCACATG+AGG + chr7_2:6378412-6378431 None:intergenic 65.0%
GATGCGGGCCGGTCTTGATG+CGG + chr7_2:6378636-6378655 None:intergenic 65.0%
! CGCTTTTCGTCGATGCGGGC+CGG + chr7_2:6378647-6378666 None:intergenic 65.0%
! CGGCCCGCATCGACGAAAAG+CGG - chr7_2:6378645-6378664 Msa1046040:intron 65.0%
!!! CGGCCGCTTTTCGTCGATGC+GGG + chr7_2:6378651-6378670 None:intergenic 65.0%
!!! GCGGCCGCTTTTCGTCGATG+CGG + chr7_2:6378652-6378671 None:intergenic 65.0%
TGCCGGAGCGTGTCTAGTGG+TGG + chr7_2:6378687-6378706 None:intergenic 65.0%
CTGTGCCGGAGCGTGTCTAG+TGG + chr7_2:6378690-6378709 None:intergenic 65.0%
CGCTCCGGCACAGATCAACG+CGG - chr7_2:6378697-6378716 Msa1046040:intron 65.0%
TCCGGCACAGATCAACGCGG+AGG - chr7_2:6378700-6378719 Msa1046040:intron 65.0%
ACGCTATCTCGGGCGCGAAG+CGG - chr7_2:6378734-6378753 Msa1046040:intron 65.0%
AGCGGAAATTCGGCGCGGCG+CGG - chr7_2:6377995-6378014 Msa1046040:intron 70.0%
ATTGACGCGGCGCGGGATGC+GGG - chr7_2:6378029-6378048 Msa1046040:intron 70.0%
CGCTATCTCGGGCGCGAAGC+GGG - chr7_2:6378735-6378754 Msa1046040:intron 70.0%
TATCTCGGGCGCGAAGCGGG+CGG - chr7_2:6378738-6378757 Msa1046040:intron 70.0%
CGCGGGATGCGGGAGCGAAG+CGG - chr7_2:6378039-6378058 Msa1046040:intron 75.0%
GCGGGATGCGGGAGCGAAGC+GGG - chr7_2:6378040-6378059 Msa1046040:intron 75.0%
! CGGGCGCGAAGCGGGCGGCG+CGG - chr7_2:6378743-6378762 Msa1046040:intron 90.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 6375361 6380279 6375361 ID=Msa1046040;Name=Msa1046040
chr7_2 mRNA 6375361 6380279 6375361 ID=Msa1046040-mRNA-1;Parent=Msa1046040;Name=Msa1046040-mRNA-1;_AED=0.30;_eAED=0.30;_QI=719|1|1|1|0.25|0.22|9|561|69
chr7_2 exon 6375361 6375784 6375361 ID=Msa1046040-mRNA-1:exon:1470;Parent=Msa1046040-mRNA-1
chr7_2 exon 6375881 6376022 6375881 ID=Msa1046040-mRNA-1:exon:1469;Parent=Msa1046040-mRNA-1
chr7_2 exon 6376455 6376554 6376455 ID=Msa1046040-mRNA-1:exon:1468;Parent=Msa1046040-mRNA-1
chr7_2 exon 6376658 6376849 6376658 ID=Msa1046040-mRNA-1:exon:1467;Parent=Msa1046040-mRNA-1
chr7_2 exon 6377658 6377753 6377658 ID=Msa1046040-mRNA-1:exon:1466;Parent=Msa1046040-mRNA-1
chr7_2 exon 6378586 6378626 6378586 ID=Msa1046040-mRNA-1:exon:1465;Parent=Msa1046040-mRNA-1
chr7_2 exon 6379241 6379309 6379241 ID=Msa1046040-mRNA-1:exon:1464;Parent=Msa1046040-mRNA-1
chr7_2 exon 6379579 6379696 6379579 ID=Msa1046040-mRNA-1:exon:1463;Parent=Msa1046040-mRNA-1
chr7_2 exon 6379972 6380279 6379972 ID=Msa1046040-mRNA-1:exon:1462;Parent=Msa1046040-mRNA-1
chr7_2 five_prime_UTR 6379972 6380279 6379972 ID=Msa1046040-mRNA-1:five_prime_utr;Parent=Msa1046040-mRNA-1
chr7_2 five_prime_UTR 6379579 6379696 6379579 ID=Msa1046040-mRNA-1:five_prime_utr;Parent=Msa1046040-mRNA-1
chr7_2 five_prime_UTR 6379241 6379309 6379241 ID=Msa1046040-mRNA-1:five_prime_utr;Parent=Msa1046040-mRNA-1
chr7_2 five_prime_UTR 6378586 6378626 6378586 ID=Msa1046040-mRNA-1:five_prime_utr;Parent=Msa1046040-mRNA-1
chr7_2 five_prime_UTR 6377658 6377753 6377658 ID=Msa1046040-mRNA-1:five_prime_utr;Parent=Msa1046040-mRNA-1
chr7_2 five_prime_UTR 6376763 6376849 6376763 ID=Msa1046040-mRNA-1:five_prime_utr;Parent=Msa1046040-mRNA-1
chr7_2 CDS 6376658 6376762 6376658 ID=Msa1046040-mRNA-1:cds;Parent=Msa1046040-mRNA-1
chr7_2 CDS 6376455 6376554 6376455 ID=Msa1046040-mRNA-1:cds;Parent=Msa1046040-mRNA-1
chr7_2 CDS 6376018 6376022 6376018 ID=Msa1046040-mRNA-1:cds;Parent=Msa1046040-mRNA-1
chr7_2 three_prime_UTR 6375881 6376017 6375881 ID=Msa1046040-mRNA-1:three_prime_utr;Parent=Msa1046040-mRNA-1
chr7_2 three_prime_UTR 6375361 6375784 6375361 ID=Msa1046040-mRNA-1:three_prime_utr;Parent=Msa1046040-mRNA-1
Gene Sequence

>Msa1046040

ATGAAAGTTTTTATTGGTGCTTACGAGAGGGTGAATTTAGGACTAAATAGGGGTTTCACTTTATTGTCTTACTGCTTAGTCATGCTAAAATTAAGCCACCCTCAGGCTTGGGGAACCATGCTCCAACAATGTCAAATGCTTGGTCTGGGTCTAAACTGTTTATTAATGATGATTCCATTGAGGAACTCAAACAATTTAAGGAAAGATTAA
Protein sequence

>Msa1046040

MKVFIGAYERVNLGLNRGFTLLSYCLVMLKLSHPQAWGTMLQQCQMLGLGLNCLLMMIPLRNSNNLRKD*