Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050880 | XP_003621523.1 | 92.562 | 121 | 9 | 0 | 24 | 144 | 97 | 217 | 1.55e-73 | 229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050880 | G7KR18 | 92.562 | 121 | 9 | 0 | 24 | 144 | 97 | 217 | 7.39e-74 | 229 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0638350 | Msa1050880 | 0.800020 | 1.753084e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050880 | MtrunA17_Chr7g0220141 | 92.562 | 121 | 9 | 0 | 24 | 144 | 143 | 263 | 2.31e-77 | 230 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050880 | AT5G38900.1 | 64.912 | 114 | 40 | 0 | 31 | 144 | 104 | 217 | 6.65e-50 | 159 |
| Msa1050880 | AT5G38900.2 | 64.912 | 114 | 40 | 0 | 31 | 144 | 123 | 236 | 9.68e-50 | 159 |
Find 69 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATACGTACAACGTAATA+TGG | 0.215251 | 7_2:-17033454 | None:intergenic |
| TTATTCATTTGACAGATTAA+TGG | 0.263878 | 7_2:+17033528 | Msa1050880:intron |
| CTGGCAAAACTTCTGAATTC+TGG | 0.274152 | 7_2:+17029781 | Msa1050880:five_prime_UTR |
| ACTACTTGCCTACTTGTGTT+TGG | 0.281280 | 7_2:+17033889 | Msa1050880:three_prime_UTR |
| AACTGAATTCACAGATAATA+TGG | 0.282529 | 7_2:+17031342 | Msa1050880:intron |
| GTATGAGTGTTGTAAACTTC+AGG | 0.295372 | 7_2:+17033741 | Msa1050880:three_prime_UTR |
| ATGCCTTCTTTAGGGGCATC+AGG | 0.331747 | 7_2:-17031383 | None:intergenic |
| CTACTTGCCTACTTGTGTTT+GGG | 0.344435 | 7_2:+17033890 | Msa1050880:three_prime_UTR |
| GCTGCCAAGGTTGGTATAGA+AGG | 0.357138 | 7_2:+17032942 | Msa1050880:CDS |
| TGGGTGCAGGAAGTTTCTTC+TGG | 0.368277 | 7_2:+17032914 | Msa1050880:intron |
| CTCACACAGGGGAAACACTA+TGG | 0.380886 | 7_2:+17031981 | Msa1050880:intron |
| CAAAGCCATAGCTTCATCTA+AGG | 0.399551 | 7_2:+17031067 | Msa1050880:five_prime_UTR |
| ACATACTCAAGAAACATTAC+AGG | 0.414741 | 7_2:+17033427 | Msa1050880:CDS |
| GGCATCAGGGTTGAGTTGAT+AGG | 0.417949 | 7_2:-17031369 | None:intergenic |
| TACCTCTTTGAGCCCATTGT+TGG | 0.425675 | 7_2:-17032988 | None:intergenic |
| ATACTTTGGAAATAAGAAAC+TGG | 0.427767 | 7_2:+17033668 | Msa1050880:three_prime_UTR |
| GTATGTCCATGGTGCTTTGT+TGG | 0.432542 | 7_2:+17031029 | Msa1050880:five_prime_UTR |
| CTTCTGTTACAATCATACTT+TGG | 0.437940 | 7_2:+17033654 | Msa1050880:three_prime_UTR |
| ACCTCTTTGAGCCCATTGTT+GGG | 0.440357 | 7_2:-17032987 | None:intergenic |
| GGTGTCATGTTGAATTGTAT+TGG | 0.457136 | 7_2:+17033689 | Msa1050880:three_prime_UTR |
| TTCTTAAGAATCCCAACAAT+GGG | 0.457484 | 7_2:+17032976 | Msa1050880:CDS |
| CTAGTTGAAGAACTTGGCCT+TGG | 0.460943 | 7_2:+17032060 | Msa1050880:CDS |
| AGTCATTCAATTTATTATTG+AGG | 0.462178 | 7_2:-17033842 | None:intergenic |
| CAATGTAATCAGAAACTTTG+AGG | 0.464107 | 7_2:-17033630 | None:intergenic |
| CTAAAGAAGGCATTGAAAAG+AGG | 0.467080 | 7_2:+17031393 | Msa1050880:CDS |
| CTGGAAGCTGCTGCCAAGGT+TGG | 0.471286 | 7_2:+17032933 | Msa1050880:CDS |
| AAACAACAAATCAAATTCTC+TGG | 0.471826 | 7_2:+17029762 | Msa1050880:five_prime_UTR |
| TCTTCTGGAAGCTGCTGCCA+AGG | 0.472718 | 7_2:+17032929 | Msa1050880:CDS |
| CGATGACTTTCCAACACGTT+CGG | 0.485715 | 7_2:+17029646 | None:intergenic |
| AAAGCTCTCAAGAAGACCTC+AGG | 0.489445 | 7_2:-17033579 | None:intergenic |
| CATGATCTAGTTGAAGAACT+TGG | 0.490582 | 7_2:+17032054 | Msa1050880:CDS |
| TATCAGAACTAATATCAATT+CGG | 0.492334 | 7_2:-17031004 | None:intergenic |
| TAAGGACAAATACAACTTTG+AGG | 0.502225 | 7_2:+17031085 | Msa1050880:five_prime_UTR |
| TGCCTTCTTTAGGGGCATCA+GGG | 0.510379 | 7_2:-17031382 | None:intergenic |
| AGCTTCCATCTGATCCGATC+GGG | 0.511003 | 7_2:-17031441 | None:intergenic |
| TTTGTCCTTAGATGAAGCTA+TGG | 0.517732 | 7_2:-17031072 | None:intergenic |
| TATGAGTGTTGTAAACTTCA+GGG | 0.518708 | 7_2:+17033742 | Msa1050880:three_prime_UTR |
| AAAGTCAACTTGTAGCAGCT+TGG | 0.525306 | 7_2:-17033602 | None:intergenic |
| TGCCCCTTCTATACCAACCT+TGG | 0.525930 | 7_2:-17032946 | None:intergenic |
| CTGCCAAGGTTGGTATAGAA+GGG | 0.531395 | 7_2:+17032943 | Msa1050880:CDS |
| AACCCTGATGCCCCTAAAGA+AGG | 0.532587 | 7_2:+17031380 | Msa1050880:exon |
| GGTTGGTATAGAAGGGGCAG+AGG | 0.538745 | 7_2:+17032950 | Msa1050880:CDS |
| TAAAGAAGGCATTGAAAAGA+GGG | 0.544653 | 7_2:+17031394 | Msa1050880:CDS |
| GTCATGTTGAATTGTATTGG+TGG | 0.546483 | 7_2:+17033692 | Msa1050880:three_prime_UTR |
| TGGCCTTGGTTATTTCACTC+AGG | 0.553393 | 7_2:+17032074 | Msa1050880:CDS |
| GCATCAGGGTTGAGTTGATA+GGG | 0.561430 | 7_2:-17031368 | None:intergenic |
| CATACTCAAGAAACATTACA+GGG | 0.572031 | 7_2:+17033428 | Msa1050880:CDS |
| TGGATCCCGATCGGATCAGA+TGG | 0.574844 | 7_2:+17031436 | Msa1050880:CDS |
| AATTTCAAAGTATTATACAT+TGG | 0.576631 | 7_2:+17033815 | Msa1050880:three_prime_UTR |
| TTTCTTAAGAATCCCAACAA+TGG | 0.583420 | 7_2:+17032975 | Msa1050880:CDS |
| AAGCTCTCAAGAAGACCTCA+GGG | 0.583553 | 7_2:-17033578 | None:intergenic |
| GATCGGATCAGATGGAAGCT+CGG | 0.589713 | 7_2:+17031444 | Msa1050880:CDS |
| ACACTCACCCAAACACAAGT+AGG | 0.596669 | 7_2:-17033897 | None:intergenic |
| GAAACACTATGGACAGCCAC+AGG | 0.602840 | 7_2:+17031992 | Msa1050880:CDS |
| GAGCTTCCATCTGATCCGAT+CGG | 0.606935 | 7_2:-17031442 | None:intergenic |
| AGAGACATTGCAGATACAGG+AGG | 0.614738 | 7_2:+17030937 | Msa1050880:intron |
| AATGGAAGTCAGAAATTAAG+CGG | 0.617981 | 7_2:+17033546 | Msa1050880:CDS |
| TATTGGTGGTCTAGCACAAG+TGG | 0.625701 | 7_2:+17033706 | Msa1050880:three_prime_UTR |
| TTTCCTGAGTGAAATAACCA+AGG | 0.628300 | 7_2:-17032077 | None:intergenic |
| AAGCAAGTTTGGATCCCGAT+CGG | 0.629054 | 7_2:+17031427 | Msa1050880:CDS |
| TGCCAAGGTTGGTATAGAAG+GGG | 0.641897 | 7_2:+17032944 | Msa1050880:CDS |
| TCCCAACAATGGGCTCAAAG+AGG | 0.647198 | 7_2:+17032986 | Msa1050880:CDS |
| GCTCTCAAGAAGACCTCAGG+GGG | 0.652062 | 7_2:-17033576 | None:intergenic |
| GTTCTGATACTGTATGTCCA+TGG | 0.654611 | 7_2:+17031018 | Msa1050880:five_prime_UTR |
| GGAAGTCAGAAATTAAGCGG+TGG | 0.659690 | 7_2:+17033549 | Msa1050880:CDS |
| GATGGAAGCTCGGATGTCCG+AGG | 0.670037 | 7_2:+17031454 | Msa1050880:CDS |
| TTGAAAAGTATATAAGCCTG+TGG | 0.692248 | 7_2:-17032008 | None:intergenic |
| AGCTCTCAAGAAGACCTCAG+GGG | 0.734602 | 7_2:-17033577 | None:intergenic |
| ATACTCAAGAAACATTACAG+GGG | 0.775618 | 7_2:+17033429 | Msa1050880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTTATTATTTTTTT+GGG | + | chr7_2:17029973-17029992 | Msa1050880:intron | 0.0% |
| !!! | AATATTAATATTTTTATTAT+AGG | + | chr7_2:17033478-17033497 | Msa1050880:intron | 0.0% |
| !!! | AATTTGTTATAAACTTTAAA+AGG | - | chr7_2:17033114-17033133 | None:intergenic | 10.0% |
| !!! | TTTTAAAGTTTATAACAAAT+TGG | + | chr7_2:17033113-17033132 | Msa1050880:intron | 10.0% |
| !! | ATCTAAATTCAATGAAAATA+TGG | - | chr7_2:17030008-17030027 | None:intergenic | 15.0% |
| !!! | ATTTACTTTTTAGATGTATT+TGG | + | chr7_2:17030109-17030128 | Msa1050880:intron | 15.0% |
| !! | AATATGAAAACTACAAAAAT+AGG | + | chr7_2:17032553-17032572 | Msa1050880:intron | 15.0% |
| !!! | AATTTCAAAGTATTATACAT+TGG | + | chr7_2:17033815-17033834 | Msa1050880:three_prime_UTR | 15.0% |
| !! | ACAATTCATACAAAATTCAA+TGG | - | chr7_2:17029925-17029944 | None:intergenic | 20.0% |
| !!! | TTTATTATTTTTTTGGGACA+AGG | + | chr7_2:17029979-17029998 | Msa1050880:intron | 20.0% |
| !!! | TTATTATTTTTTTGGGACAA+GGG | + | chr7_2:17029980-17029999 | Msa1050880:intron | 20.0% |
| !!! | TTTTTAGATGTATTTGGTTT+AGG | + | chr7_2:17030115-17030134 | Msa1050880:intron | 20.0% |
| !!! | GTCAATTTTTTCTTGTAAAT+AGG | + | chr7_2:17030178-17030197 | Msa1050880:intron | 20.0% |
| !! | AATGTGAAATGATTTATGTT+TGG | + | chr7_2:17030282-17030301 | Msa1050880:intron | 20.0% |
| !!! | ATAATTGATTTTAACATGTG+TGG | - | chr7_2:17030437-17030456 | None:intergenic | 20.0% |
| !! | TAAAATCAATTATACACTTC+TGG | + | chr7_2:17030444-17030463 | Msa1050880:intron | 20.0% |
| !! | AGGGTAATAGTAAAAAATTA+AGG | - | chr7_2:17030684-17030703 | None:intergenic | 20.0% |
| !!! | ACACTTTTGTTCAAAATTTA+AGG | - | chr7_2:17030761-17030780 | None:intergenic | 20.0% |
| !!! | TATGAGTAATGTTTTATCTT+AGG | + | chr7_2:17030864-17030883 | Msa1050880:intron | 20.0% |
| !! | TATCAGAACTAATATCAATT+CGG | - | chr7_2:17031007-17031026 | None:intergenic | 20.0% |
| !! | GATTAATAAAATGAAAACCT+CGG | - | chr7_2:17031474-17031493 | None:intergenic | 20.0% |
| !!! | CATTATTTCCATTTTGTATT+TGG | + | chr7_2:17031570-17031589 | Msa1050880:intron | 20.0% |
| !! | ATCAAAAGAAAAATACTTAC+TGG | - | chr7_2:17032116-17032135 | None:intergenic | 20.0% |
| !! | ACAAAACAAAACAAAAACAA+AGG | - | chr7_2:17032144-17032163 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTTGTTTTGTTGT+GGG | + | chr7_2:17032147-17032166 | Msa1050880:intron | 20.0% |
| !! | TAGATAGCTATATATCAATA+TGG | + | chr7_2:17032402-17032421 | Msa1050880:intron | 20.0% |
| !! | CTATATATCAATATGGATTT+CGG | + | chr7_2:17032409-17032428 | Msa1050880:intron | 20.0% |
| !! | AACAAAGCTAAATTTAACTA+AGG | - | chr7_2:17032519-17032538 | None:intergenic | 20.0% |
| !! | ATGCATTAAATAAAGCATAA+AGG | - | chr7_2:17033038-17033057 | None:intergenic | 20.0% |
| !! | AATAAGATACATTAAGCATT+TGG | - | chr7_2:17033091-17033110 | None:intergenic | 20.0% |
| !! | TTATTCATTTGACAGATTAA+TGG | + | chr7_2:17033528-17033547 | Msa1050880:intron | 20.0% |
| !! | AGTCATTCAATTTATTATTG+AGG | - | chr7_2:17033845-17033864 | None:intergenic | 20.0% |
| ! | AAACAACAAATCAAATTCTC+TGG | + | chr7_2:17029762-17029781 | Msa1050880:five_prime_UTR | 25.0% |
| ! | AGTATAGGAATAATACATGA+AGG | - | chr7_2:17029827-17029846 | None:intergenic | 25.0% |
| ! | GTAAATTGTCTCTTGTAAAT+AGG | - | chr7_2:17030095-17030114 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTGTAAATAGGAC+CGG | + | chr7_2:17030183-17030202 | Msa1050880:intron | 25.0% |
| !!! | GAGTATTATTTTAGTGTGTT+TGG | + | chr7_2:17030209-17030228 | Msa1050880:intron | 25.0% |
| !! | CAAGTTAGCATTAATTTTAG+AGG | + | chr7_2:17030387-17030406 | Msa1050880:intron | 25.0% |
| !! | CTTCGATTTAGAATCAATTT+CGG | - | chr7_2:17030584-17030603 | None:intergenic | 25.0% |
| !! | TCTAGCTTCATATATATTTG+AGG | - | chr7_2:17030646-17030665 | None:intergenic | 25.0% |
| ! | TCTCTTCTTTGTAATTTGAA+GGG | - | chr7_2:17030703-17030722 | None:intergenic | 25.0% |
| !! | AATAAATGTGAGATTTTCCA+AGG | - | chr7_2:17030726-17030745 | None:intergenic | 25.0% |
| ! | AAGTGTACATGTATGAAATT+TGG | + | chr7_2:17030775-17030794 | Msa1050880:intron | 25.0% |
| ! | AGTGTACATGTATGAAATTT+GGG | + | chr7_2:17030776-17030795 | Msa1050880:intron | 25.0% |
| ! | AATGTCTTGATATCATAAGT+TGG | + | chr7_2:17030824-17030843 | Msa1050880:intron | 25.0% |
| ! | ATTGTTCTTTCTACTTGTAA+TGG | + | chr7_2:17030893-17030912 | Msa1050880:intron | 25.0% |
| !!! | TACGCTTTTTATTACAAAAG+TGG | + | chr7_2:17031228-17031247 | Msa1050880:intron | 25.0% |
| ! | GTTATAGCATTATAGTGTAA+CGG | + | chr7_2:17031252-17031271 | Msa1050880:intron | 25.0% |
| !! | TTTTCTGTAATTGACAATAC+AGG | + | chr7_2:17031293-17031312 | Msa1050880:intron | 25.0% |
| ! | AACTGAATTCACAGATAATA+TGG | + | chr7_2:17031342-17031361 | Msa1050880:intron | 25.0% |
| ! | AGTACTTAGTTAAGTGATTA+TGG | + | chr7_2:17031695-17031714 | Msa1050880:intron | 25.0% |
| ! | AGCTAACTTCAAATAGTTTA+TGG | + | chr7_2:17031784-17031803 | Msa1050880:intron | 25.0% |
| ! | TTCACTCAGGAAAAATATAT+TGG | + | chr7_2:17032087-17032106 | Msa1050880:CDS | 25.0% |
| !!! | GTTTTTGTTTTGTTTTGTTG+TGG | + | chr7_2:17032146-17032165 | Msa1050880:intron | 25.0% |
| !!! | TTTTGTTTTGTTTTGTTGTG+GGG | + | chr7_2:17032148-17032167 | Msa1050880:intron | 25.0% |
| ! | AAACTACAAAAATAGGATGA+TGG | + | chr7_2:17032560-17032579 | Msa1050880:intron | 25.0% |
| !! | AGGCATTATCCTTTTAAATT+TGG | + | chr7_2:17032894-17032913 | Msa1050880:intron | 25.0% |
| !! | GGCATTATCCTTTTAAATTT+GGG | + | chr7_2:17032895-17032914 | Msa1050880:intron | 25.0% |
| ! | AAAATGACTAGCAACTAAAA+TGG | - | chr7_2:17033147-17033166 | None:intergenic | 25.0% |
| ! | AATGCATATGATATCTATTG+TGG | - | chr7_2:17033319-17033338 | None:intergenic | 25.0% |
| !! | ATACTTTGGAAATAAGAAAC+TGG | + | chr7_2:17033668-17033687 | Msa1050880:three_prime_UTR | 25.0% |
| !! | GTTTTATGAAAGTAATTGAG+TGG | + | chr7_2:17033918-17033937 | Msa1050880:three_prime_UTR | 25.0% |
| GAAGGATAAAGAGAGAAAAA+AGG | - | chr7_2:17029809-17029828 | None:intergenic | 30.0% | |
| ! | ATAGCTTTTGTATGTTCACA+TGG | + | chr7_2:17030050-17030069 | Msa1050880:intron | 30.0% |
| TATACTCCAACTTATTGTAC+AGG | - | chr7_2:17030328-17030347 | None:intergenic | 30.0% | |
| !! | TGTATGTTTGGTTTCAAGTT+TGG | + | chr7_2:17030499-17030518 | Msa1050880:intron | 30.0% |
| GGAGGAAATATTAATTCTAG+AGG | + | chr7_2:17030523-17030542 | Msa1050880:intron | 30.0% | |
| GTCTCTTCTTTGTAATTTGA+AGG | - | chr7_2:17030704-17030723 | None:intergenic | 30.0% | |
| AAATTACAAAGAAGAGACCT+TGG | + | chr7_2:17030706-17030725 | Msa1050880:intron | 30.0% | |
| GTGTACATGTATGAAATTTG+GGG | + | chr7_2:17030777-17030796 | Msa1050880:intron | 30.0% | |
| TAAGGACAAATACAACTTTG+AGG | + | chr7_2:17031085-17031104 | Msa1050880:five_prime_UTR | 30.0% | |
| ! | TTTTGCGGTCAAAATTTGTA+TGG | + | chr7_2:17031134-17031153 | Msa1050880:intron | 30.0% |
| ! | TTGTAATAAAAAGCGTATCG+CGG | - | chr7_2:17031225-17031244 | None:intergenic | 30.0% |
| ! | TCTTTTCAATGCCTTCTTTA+GGG | - | chr7_2:17031394-17031413 | None:intergenic | 30.0% |
| !! | TAAAGAAGGCATTGAAAAGA+GGG | + | chr7_2:17031394-17031413 | Msa1050880:CDS | 30.0% |
| ! | ATTTCCATTTTGTATTTGGC+AGG | + | chr7_2:17031574-17031593 | Msa1050880:intron | 30.0% |
| ACTAAGTACTTTATCCAAAC+AGG | - | chr7_2:17031685-17031704 | None:intergenic | 30.0% | |
| TTGTTTCAATTATCTCACAC+AGG | + | chr7_2:17031968-17031987 | Msa1050880:intron | 30.0% | |
| TGTTTCAATTATCTCACACA+GGG | + | chr7_2:17031969-17031988 | Msa1050880:intron | 30.0% | |
| ! | TTGAAAAGTATATAAGCCTG+TGG | - | chr7_2:17032011-17032030 | None:intergenic | 30.0% |
| !! | TATATACTTTTCAAGACAGC+AGG | + | chr7_2:17032017-17032036 | Msa1050880:CDS | 30.0% |
| !! | ATATACTTTTCAAGACAGCA+GGG | + | chr7_2:17032018-17032037 | Msa1050880:CDS | 30.0% |
| TTATGTTAGTGTCAGATATG+CGG | - | chr7_2:17032276-17032295 | None:intergenic | 30.0% | |
| TACTATAGTCTCAGAATGTA+TGG | + | chr7_2:17032590-17032609 | Msa1050880:intron | 30.0% | |
| !!! | TTCTCAAGTGTGTTTTTAGT+TGG | + | chr7_2:17032627-17032646 | Msa1050880:intron | 30.0% |
| ATTAACGAAAGACACATTTG+AGG | + | chr7_2:17032669-17032688 | Msa1050880:intron | 30.0% | |
| AAATGTGTCTTTCGTTAGTT+TGG | - | chr7_2:17032696-17032715 | None:intergenic | 30.0% | |
| TTTGGTCCTTAATTAATGTG+AGG | - | chr7_2:17032799-17032818 | None:intergenic | 30.0% | |
| ! | ATGTGAGTGAACAATCATTT+TGG | - | chr7_2:17032817-17032836 | None:intergenic | 30.0% |
| GAACTAGATTATAAGACACT+TGG | - | chr7_2:17032860-17032879 | None:intergenic | 30.0% | |
| TAGTTCCTAAAGTAACAAAC+AGG | + | chr7_2:17032874-17032893 | Msa1050880:intron | 30.0% | |
| !! | TAATGCCTGTTTGTTACTTT+AGG | - | chr7_2:17032882-17032901 | None:intergenic | 30.0% |
| TTTCTTAAGAATCCCAACAA+TGG | + | chr7_2:17032975-17032994 | Msa1050880:CDS | 30.0% | |
| TTCTTAAGAATCCCAACAAT+GGG | + | chr7_2:17032976-17032995 | Msa1050880:CDS | 30.0% | |
| ! | CATTTTTGTGCAATCAAATC+TGG | + | chr7_2:17033161-17033180 | Msa1050880:intron | 30.0% |
| CATATGATATCTATTGTGGT+AGG | - | chr7_2:17033315-17033334 | None:intergenic | 30.0% | |
| ACATACTCAAGAAACATTAC+AGG | + | chr7_2:17033427-17033446 | Msa1050880:CDS | 30.0% | |
| CATACTCAAGAAACATTACA+GGG | + | chr7_2:17033428-17033447 | Msa1050880:CDS | 30.0% | |
| ATACTCAAGAAACATTACAG+GGG | + | chr7_2:17033429-17033448 | Msa1050880:CDS | 30.0% | |
| TGTATACGTACAACGTAATA+TGG | - | chr7_2:17033457-17033476 | None:intergenic | 30.0% | |
| AATGGAAGTCAGAAATTAAG+CGG | + | chr7_2:17033546-17033565 | Msa1050880:CDS | 30.0% | |
| CAATGTAATCAGAAACTTTG+AGG | - | chr7_2:17033633-17033652 | None:intergenic | 30.0% | |
| CTTCTGTTACAATCATACTT+TGG | + | chr7_2:17033654-17033673 | Msa1050880:three_prime_UTR | 30.0% | |
| ! | TATGAGTGTTGTAAACTTCA+GGG | + | chr7_2:17033742-17033761 | Msa1050880:three_prime_UTR | 30.0% |
| ! | AGTTGCAATGAGAGAAGTAT+AGG | - | chr7_2:17029842-17029861 | None:intergenic | 35.0% |
| TAGTGAACACAAGTTTCAGA+AGG | - | chr7_2:17030031-17030050 | None:intergenic | 35.0% | |
| TTGTCTCTTGTAAATAGGAC+CGG | - | chr7_2:17030090-17030109 | None:intergenic | 35.0% | |
| CACTAAAATAATACTCCCTC+CGG | - | chr7_2:17030205-17030224 | None:intergenic | 35.0% | |
| !!! | TTTTAGTGTGTTTGGTTCTG+CGG | + | chr7_2:17030217-17030236 | Msa1050880:intron | 35.0% |
| AAGTGACCTGTACAATAAGT+TGG | + | chr7_2:17030319-17030338 | Msa1050880:intron | 35.0% | |
| ACATACATCAGTTCCACTTT+GGG | - | chr7_2:17030486-17030505 | None:intergenic | 35.0% | |
| AACATACATCAGTTCCACTT+TGG | - | chr7_2:17030487-17030506 | None:intergenic | 35.0% | |
| AAGTGGAACTGATGTATGTT+TGG | + | chr7_2:17030487-17030506 | Msa1050880:intron | 35.0% | |
| !! | ATGTTTGGTTTCAAGTTTGG+AGG | + | chr7_2:17030502-17030521 | Msa1050880:intron | 35.0% |
| ! | TTTGGGGCAAATAGTTCAAA+AGG | + | chr7_2:17030793-17030812 | Msa1050880:intron | 35.0% |
| TTGGGGCAAATAGTTCAAAA+GGG | + | chr7_2:17030794-17030813 | Msa1050880:intron | 35.0% | |
| TTTAGAGACATTGCAGATAC+AGG | + | chr7_2:17030934-17030953 | Msa1050880:intron | 35.0% | |
| ! | AATTCGGACGAGTTTCTTTT+CGG | - | chr7_2:17030991-17031010 | None:intergenic | 35.0% |
| TTTGTCCTTAGATGAAGCTA+TGG | - | chr7_2:17031075-17031094 | None:intergenic | 35.0% | |
| ! | CTTTTCAATGCCTTCTTTAG+GGG | - | chr7_2:17031393-17031412 | None:intergenic | 35.0% |
| ! | CTCTTTTCAATGCCTTCTTT+AGG | - | chr7_2:17031395-17031414 | None:intergenic | 35.0% |
| !! | CTAAAGAAGGCATTGAAAAG+AGG | + | chr7_2:17031393-17031412 | Msa1050880:CDS | 35.0% |
| ! | GAGTTTTACAGAAGCAAGTT+TGG | + | chr7_2:17031416-17031435 | Msa1050880:CDS | 35.0% |
| AAGACCTGCCAAATACAAAA+TGG | - | chr7_2:17031581-17031600 | None:intergenic | 35.0% | |
| !! | GGTCTTGTTTATAGTTTGTC+AGG | + | chr7_2:17031611-17031630 | Msa1050880:intron | 35.0% |
| TCAATGAACATGATCCTGTT+TGG | + | chr7_2:17031668-17031687 | Msa1050880:intron | 35.0% | |
| AAACTCATTGTGAGAGCTTA+TGG | - | chr7_2:17031828-17031847 | None:intergenic | 35.0% | |
| TCTCACAATGAGTTTCACAA+GGG | + | chr7_2:17031833-17031852 | Msa1050880:intron | 35.0% | |
| GTTTCAATTATCTCACACAG+GGG | + | chr7_2:17031970-17031989 | Msa1050880:intron | 35.0% | |
| CATGATCTAGTTGAAGAACT+TGG | + | chr7_2:17032054-17032073 | Msa1050880:CDS | 35.0% | |
| TTTCCTGAGTGAAATAACCA+AGG | - | chr7_2:17032080-17032099 | None:intergenic | 35.0% | |
| TTATGTGTCAGTGTCATGTT+CGG | + | chr7_2:17032344-17032363 | Msa1050880:intron | 35.0% | |
| !! | TTAGCTTTGTTAACTCAGCT+TGG | + | chr7_2:17032528-17032547 | Msa1050880:intron | 35.0% |
| !! | TAGCTTTGTTAACTCAGCTT+GGG | + | chr7_2:17032529-17032548 | Msa1050880:intron | 35.0% |
| ACAACGCCTCACATTAATTA+AGG | + | chr7_2:17032790-17032809 | Msa1050880:intron | 35.0% | |
| ! | ATCCTTTTAAATTTGGGTGC+AGG | + | chr7_2:17032901-17032920 | Msa1050880:intron | 35.0% |
| TTCCTGCACCCAAATTTAAA+AGG | - | chr7_2:17032906-17032925 | None:intergenic | 35.0% | |
| ! | GGTGTCATGTTGAATTGTAT+TGG | + | chr7_2:17033689-17033708 | Msa1050880:three_prime_UTR | 35.0% |
| GTCATGTTGAATTGTATTGG+TGG | + | chr7_2:17033692-17033711 | Msa1050880:three_prime_UTR | 35.0% | |
| ! | GTATGAGTGTTGTAAACTTC+AGG | + | chr7_2:17033741-17033760 | Msa1050880:three_prime_UTR | 35.0% |
| CTGGCAAAACTTCTGAATTC+TGG | + | chr7_2:17029781-17029800 | Msa1050880:five_prime_UTR | 40.0% | |
| ! | CATGGAGATTTTTACTCCTC+CGG | + | chr7_2:17030068-17030087 | Msa1050880:intron | 40.0% |
| TTTCTTGTAAATAGGACCGG+AGG | + | chr7_2:17030186-17030205 | Msa1050880:intron | 40.0% | |
| TTCTTGTAAATAGGACCGGA+GGG | + | chr7_2:17030187-17030206 | Msa1050880:intron | 40.0% | |
| ATACATCAGTTCCACTTTGG+GGG | - | chr7_2:17030484-17030503 | None:intergenic | 40.0% | |
| CATACATCAGTTCCACTTTG+GGG | - | chr7_2:17030485-17030504 | None:intergenic | 40.0% | |
| !! | TTTGGTTTCAAGTTTGGAGG+AGG | + | chr7_2:17030505-17030524 | Msa1050880:intron | 40.0% |
| TGGGGCAAATAGTTCAAAAG+GGG | + | chr7_2:17030795-17030814 | Msa1050880:intron | 40.0% | |
| GTTCTGATACTGTATGTCCA+TGG | + | chr7_2:17031018-17031037 | Msa1050880:five_prime_UTR | 40.0% | |
| !! | TTTTTGCCAACAAAGCACCA+TGG | - | chr7_2:17031038-17031057 | None:intergenic | 40.0% |
| CAAAGCCATAGCTTCATCTA+AGG | + | chr7_2:17031067-17031086 | Msa1050880:five_prime_UTR | 40.0% | |
| ! | CTCTTTCCATCTGTGTTTTG+CGG | + | chr7_2:17031119-17031138 | Msa1050880:intron | 40.0% |
| ! | TTTTGACCGCAAAACACAGA+TGG | - | chr7_2:17031128-17031147 | None:intergenic | 40.0% |
| TTTGTATTTGGCAGGTCTTC+AGG | + | chr7_2:17031582-17031601 | Msa1050880:intron | 40.0% | |
| GACTCACGTAAGATTAAGAG+TGG | + | chr7_2:17031633-17031652 | Msa1050880:intron | 40.0% | |
| CTCTCACAATGAGTTTCACA+AGG | + | chr7_2:17031832-17031851 | Msa1050880:intron | 40.0% | |
| TCAACTAAGTCAGTCCAAAC+AGG | + | chr7_2:17031875-17031894 | Msa1050880:intron | 40.0% | |
| CATCAAACTTTGAGCCTGTT+TGG | - | chr7_2:17031892-17031911 | None:intergenic | 40.0% | |
| TCAATGAACCACTTCAAACG+TGG | + | chr7_2:17031916-17031935 | Msa1050880:intron | 40.0% | |
| ACAACATTCCACGTTTGAAG+TGG | - | chr7_2:17031927-17031946 | None:intergenic | 40.0% | |
| ATCTGGATTCTCTGTTGTCA+AGG | + | chr7_2:17033178-17033197 | Msa1050880:intron | 40.0% | |
| TCTGGATTCTCTGTTGTCAA+GGG | + | chr7_2:17033179-17033198 | Msa1050880:intron | 40.0% | |
| ! | TTTTCCATGACTCTCTACCT+AGG | + | chr7_2:17033387-17033406 | Msa1050880:intron | 40.0% |
| AAAGTCAACTTGTAGCAGCT+TGG | - | chr7_2:17033605-17033624 | None:intergenic | 40.0% | |
| ACTACTTGCCTACTTGTGTT+TGG | + | chr7_2:17033889-17033908 | Msa1050880:three_prime_UTR | 40.0% | |
| CTACTTGCCTACTTGTGTTT+GGG | + | chr7_2:17033890-17033909 | Msa1050880:three_prime_UTR | 40.0% | |
| !! | AGCTTGTTTTCCGAACGTGT+TGG | - | chr7_2:17029659-17029678 | None:intergenic | 45.0% |
| TCTCTTGTAAATAGGACCGG+AGG | - | chr7_2:17030087-17030106 | None:intergenic | 45.0% | |
| !!! | TAGTTTTGACACCCCCAAAG+TGG | + | chr7_2:17030470-17030489 | Msa1050880:intron | 45.0% |
| AGAGACATTGCAGATACAGG+AGG | + | chr7_2:17030937-17030956 | Msa1050880:intron | 45.0% | |
| GTATGTCCATGGTGCTTTGT+TGG | + | chr7_2:17031029-17031048 | Msa1050880:five_prime_UTR | 45.0% | |
| ! | AAAAGCGTATCGCGGAACAA+AGG | - | chr7_2:17031217-17031236 | None:intergenic | 45.0% |
| !! | GCATCAGGGTTGAGTTGATA+GGG | - | chr7_2:17031371-17031390 | None:intergenic | 45.0% |
| AAGCAAGTTTGGATCCCGAT+CGG | + | chr7_2:17031427-17031446 | Msa1050880:CDS | 45.0% | |
| CGTGGAATGTTGTCTAACTG+AGG | + | chr7_2:17031934-17031953 | Msa1050880:intron | 45.0% | |
| CTAGTTGAAGAACTTGGCCT+TGG | + | chr7_2:17032060-17032079 | Msa1050880:CDS | 45.0% | |
| ! | TGGCCTTGGTTATTTCACTC+AGG | + | chr7_2:17032074-17032093 | Msa1050880:CDS | 45.0% |
| CGCTCGAAAAGTGACTATTC+AGG | - | chr7_2:17032471-17032490 | None:intergenic | 45.0% | |
| !! | CTGCCAAGGTTGGTATAGAA+GGG | + | chr7_2:17032943-17032962 | Msa1050880:CDS | 45.0% |
| !! | TGCCAAGGTTGGTATAGAAG+GGG | + | chr7_2:17032944-17032963 | Msa1050880:CDS | 45.0% |
| ACCTCTTTGAGCCCATTGTT+GGG | - | chr7_2:17032990-17033009 | None:intergenic | 45.0% | |
| TACCTCTTTGAGCCCATTGT+TGG | - | chr7_2:17032991-17033010 | None:intergenic | 45.0% | |
| TTTAAGCTCATCCTCCACCT+AGG | - | chr7_2:17033407-17033426 | None:intergenic | 45.0% | |
| GGAAGTCAGAAATTAAGCGG+TGG | + | chr7_2:17033549-17033568 | Msa1050880:CDS | 45.0% | |
| AAGCTCTCAAGAAGACCTCA+GGG | - | chr7_2:17033581-17033600 | None:intergenic | 45.0% | |
| AAAGCTCTCAAGAAGACCTC+AGG | - | chr7_2:17033582-17033601 | None:intergenic | 45.0% | |
| ! | TATTGGTGGTCTAGCACAAG+TGG | + | chr7_2:17033706-17033725 | Msa1050880:three_prime_UTR | 45.0% |
| ACACTCACCCAAACACAAGT+AGG | - | chr7_2:17033900-17033919 | None:intergenic | 45.0% | |
| !!! | GATTATTTTTATTATTTTTT+TGG | + | chr7_2:17029972-17029991 | Msa1050880:intron | 5.0% |
| !! | TAATAATATTTATATTTCAT+CGG | + | chr7_2:17031526-17031545 | Msa1050880:intron | 5.0% |
| !! | GGCATCAGGGTTGAGTTGAT+AGG | - | chr7_2:17031372-17031391 | None:intergenic | 50.0% |
| AACCCTGATGCCCCTAAAGA+AGG | + | chr7_2:17031380-17031399 | Msa1050880:exon | 50.0% | |
| !! | TGCCTTCTTTAGGGGCATCA+GGG | - | chr7_2:17031385-17031404 | None:intergenic | 50.0% |
| !! | ATGCCTTCTTTAGGGGCATC+AGG | - | chr7_2:17031386-17031405 | None:intergenic | 50.0% |
| AGCTTCCATCTGATCCGATC+GGG | - | chr7_2:17031444-17031463 | None:intergenic | 50.0% | |
| GAGCTTCCATCTGATCCGAT+CGG | - | chr7_2:17031445-17031464 | None:intergenic | 50.0% | |
| GATCGGATCAGATGGAAGCT+CGG | + | chr7_2:17031444-17031463 | Msa1050880:CDS | 50.0% | |
| CTCACACAGGGGAAACACTA+TGG | + | chr7_2:17031981-17032000 | Msa1050880:intron | 50.0% | |
| GAAACACTATGGACAGCCAC+AGG | + | chr7_2:17031992-17032011 | Msa1050880:CDS | 50.0% | |
| TGGGTGCAGGAAGTTTCTTC+TGG | + | chr7_2:17032914-17032933 | Msa1050880:intron | 50.0% | |
| !! | GCTGCCAAGGTTGGTATAGA+AGG | + | chr7_2:17032942-17032961 | Msa1050880:CDS | 50.0% |
| TGCCCCTTCTATACCAACCT+TGG | - | chr7_2:17032949-17032968 | None:intergenic | 50.0% | |
| ! | TCCCAACAATGGGCTCAAAG+AGG | + | chr7_2:17032986-17033005 | Msa1050880:CDS | 50.0% |
| TCCATGACTCTCTACCTAGG+TGG | + | chr7_2:17033390-17033409 | Msa1050880:intron | 50.0% | |
| TCCACCTAGGTAGAGAGTCA+TGG | - | chr7_2:17033394-17033413 | None:intergenic | 50.0% | |
| ATGACTCTCTACCTAGGTGG+AGG | + | chr7_2:17033393-17033412 | Msa1050880:intron | 50.0% | |
| AGCTCTCAAGAAGACCTCAG+GGG | - | chr7_2:17033580-17033599 | None:intergenic | 50.0% | |
| AGCGTATCGCGGAACAAAGG+CGG | - | chr7_2:17031214-17031233 | None:intergenic | 55.0% | |
| TGGATCCCGATCGGATCAGA+TGG | + | chr7_2:17031436-17031455 | Msa1050880:CDS | 55.0% | |
| TGGCAGGTCTTCAGGACAGT+CGG | + | chr7_2:17031590-17031609 | Msa1050880:intron | 55.0% | |
| ! | TCTTCTGGAAGCTGCTGCCA+AGG | + | chr7_2:17032929-17032948 | Msa1050880:CDS | 55.0% |
| ! | GGTTGGTATAGAAGGGGCAG+AGG | + | chr7_2:17032950-17032969 | Msa1050880:CDS | 55.0% |
| GCTCTCAAGAAGACCTCAGG+GGG | - | chr7_2:17033579-17033598 | None:intergenic | 55.0% | |
| GATGGAAGCTCGGATGTCCG+AGG | + | chr7_2:17031454-17031473 | Msa1050880:CDS | 60.0% | |
| CTGGAAGCTGCTGCCAAGGT+TGG | + | chr7_2:17032933-17032952 | Msa1050880:CDS | 60.0% | |
| AAGCGGTGGACAACCCCCTG+AGG | + | chr7_2:17033563-17033582 | Msa1050880:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 17029648 | 17033970 | 17029648 | ID=Msa1050880;Name=Msa1050880 |
| chr7_2 | mRNA | 17029648 | 17033970 | 17029648 | ID=Msa1050880-mRNA-1;Parent=Msa1050880;Name=Msa1050880-mRNA-1;_AED=0.16;_eAED=0.16;_QI=371|0.83|1|1|0.83|0.71|7|350|144 |
| chr7_2 | exon | 17029648 | 17029830 | 17029648 | ID=Msa1050880-mRNA-1:exon:3791;Parent=Msa1050880-mRNA-1 |
| chr7_2 | exon | 17030950 | 17031106 | 17030950 | ID=Msa1050880-mRNA-1:exon:3792;Parent=Msa1050880-mRNA-1 |
| chr7_2 | exon | 17031356 | 17031475 | 17031356 | ID=Msa1050880-mRNA-1:exon:3793;Parent=Msa1050880-mRNA-1 |
| chr7_2 | exon | 17031990 | 17032115 | 17031990 | ID=Msa1050880-mRNA-1:exon:3794;Parent=Msa1050880-mRNA-1 |
| chr7_2 | exon | 17032923 | 17033007 | 17032923 | ID=Msa1050880-mRNA-1:exon:3795;Parent=Msa1050880-mRNA-1 |
| chr7_2 | exon | 17033409 | 17033465 | 17033409 | ID=Msa1050880-mRNA-1:exon:3796;Parent=Msa1050880-mRNA-1 |
| chr7_2 | exon | 17033543 | 17033970 | 17033543 | ID=Msa1050880-mRNA-1:exon:3797;Parent=Msa1050880-mRNA-1 |
| chr7_2 | five_prime_UTR | 17029648 | 17029830 | 17029648 | ID=Msa1050880-mRNA-1:five_prime_utr;Parent=Msa1050880-mRNA-1 |
| chr7_2 | five_prime_UTR | 17030950 | 17031106 | 17030950 | ID=Msa1050880-mRNA-1:five_prime_utr;Parent=Msa1050880-mRNA-1 |
| chr7_2 | five_prime_UTR | 17031356 | 17031386 | 17031356 | ID=Msa1050880-mRNA-1:five_prime_utr;Parent=Msa1050880-mRNA-1 |
| chr7_2 | CDS | 17031387 | 17031475 | 17031387 | ID=Msa1050880-mRNA-1:cds;Parent=Msa1050880-mRNA-1 |
| chr7_2 | CDS | 17031990 | 17032115 | 17031990 | ID=Msa1050880-mRNA-1:cds;Parent=Msa1050880-mRNA-1 |
| chr7_2 | CDS | 17032923 | 17033007 | 17032923 | ID=Msa1050880-mRNA-1:cds;Parent=Msa1050880-mRNA-1 |
| chr7_2 | CDS | 17033409 | 17033465 | 17033409 | ID=Msa1050880-mRNA-1:cds;Parent=Msa1050880-mRNA-1 |
| chr7_2 | CDS | 17033543 | 17033620 | 17033543 | ID=Msa1050880-mRNA-1:cds;Parent=Msa1050880-mRNA-1 |
| chr7_2 | three_prime_UTR | 17033621 | 17033970 | 17033621 | ID=Msa1050880-mRNA-1:three_prime_utr;Parent=Msa1050880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
