Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1051790 | XP_024626527.1 | 96.970 | 231 | 7 | 0 | 46 | 276 | 1 | 231 | 2.36e-164 | 465 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1051790 | sp|Q921X6|RPC6_MOUSE | 25.194 | 258 | 157 | 6 | 42 | 276 | 72 | 316 | 2.62e-22 | 97.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1051790 | A0A396GUA7 | 96.970 | 231 | 7 | 0 | 46 | 276 | 1 | 231 | 1.13e-164 | 465 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1051790 | Msa1287460 | 0.802192 | 6.302986e-49 | -8.615850e-47 |
| Msa0925290 | Msa1051790 | 0.804413 | 2.186349e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1051790 | MtrunA17_Chr7g0221371 | 96.970 | 231 | 7 | 0 | 46 | 276 | 1 | 231 | 2.17e-168 | 465 |
| Msa1051790 | MtrunA17_Chr4g0020161 | 94.220 | 173 | 10 | 0 | 104 | 276 | 1 | 173 | 2.28e-121 | 343 |
| Msa1051790 | MtrunA17_Chr7g0270171 | 73.057 | 193 | 47 | 2 | 89 | 276 | 1 | 193 | 5.22e-101 | 293 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1051790 | AT5G23710.1 | 37.209 | 215 | 128 | 3 | 66 | 276 | 19 | 230 | 1.63e-46 | 155 |
Find 46 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATGACAAGTACTGGATA+TGG | 0.326445 | 7_2:-19450341 | Msa1051790:CDS |
| CGGCGAAGTGTGACTCCAAA+TGG | 0.352806 | 7_2:+19451999 | Msa1051800:intron |
| ATGAAACGTTTGCAAGAATC+TGG | 0.362818 | 7_2:-19450833 | Msa1051790:CDS |
| GATGTTTGGAGTGGGTTAAA+AGG | 0.362955 | 7_2:-19450445 | Msa1051790:CDS |
| AAGCAGTGCATATAACAAAT+AGG | 0.375937 | 7_2:+19452053 | Msa1051800:intron |
| AATGGGTTTCTGATACAATA+AGG | 0.377484 | 7_2:+19452017 | Msa1051800:intron |
| GGCACTTATAAACAAGAGTA+TGG | 0.381632 | 7_2:-19450654 | Msa1051790:CDS |
| GAGCCTTCCAAGGATATAAC+TGG | 0.383383 | 7_2:-19450572 | Msa1051790:CDS |
| TGAAAATAGACACATGTTGT+TGG | 0.391859 | 7_2:+19450179 | None:intergenic |
| TTCCACATGTGATGGATGTT+TGG | 0.402495 | 7_2:-19450459 | Msa1051790:CDS |
| GTGCTTGCAATGCATTTCAT+TGG | 0.426796 | 7_2:-19450489 | Msa1051790:CDS |
| TATTGTATCAGAAACCCATT+TGG | 0.430675 | 7_2:-19452014 | Msa1051790:CDS |
| GAAATGGTTGGATTTCTGAA+TGG | 0.445730 | 7_2:-19450156 | Msa1051790:exon |
| TAGAGTATACGCTCTTCATC+TGG | 0.446970 | 7_2:+19450773 | None:intergenic |
| TGTTTATTAAGCGCAGCAAT+AGG | 0.447212 | 7_2:+19450683 | None:intergenic |
| ATGCCCACCAGTTATATCCT+TGG | 0.459091 | 7_2:+19450565 | None:intergenic |
| TGGAGTGGGTTAAAAGGAGT+GGG | 0.480413 | 7_2:-19450439 | Msa1051790:CDS |
| AGATGACAAGTACTGGATAT+GGG | 0.485810 | 7_2:-19450340 | Msa1051790:CDS |
| AAATGGTTGGATTTCTGAAT+GGG | 0.494317 | 7_2:-19450155 | Msa1051790:exon |
| CAAAGGTATAAAGATCTACA+TGG | 0.502338 | 7_2:-19450606 | Msa1051790:CDS |
| ATACTTAGCAAGGAAAACTC+TGG | 0.503512 | 7_2:-19450743 | Msa1051790:CDS |
| ATAATGCAGATGACAAGTAC+TGG | 0.506988 | 7_2:-19450347 | Msa1051790:CDS |
| GGCGAAGTGTGACTCCAAAT+GGG | 0.521369 | 7_2:+19452000 | Msa1051800:intron |
| TATAAACAAGAGTATGGTAA+AGG | 0.546896 | 7_2:-19450648 | Msa1051790:CDS |
| CATTTGGAGTCACACTTCGC+CGG | 0.552787 | 7_2:-19451998 | Msa1051790:CDS |
| TACTTAGCAAGGAAAACTCT+GGG | 0.562428 | 7_2:-19450742 | Msa1051790:CDS |
| TTGGAGTGGGTTAAAAGGAG+TGG | 0.562912 | 7_2:-19450440 | Msa1051790:CDS |
| AACAGAATTTGAGCCTTCCA+AGG | 0.568058 | 7_2:-19450582 | Msa1051790:CDS |
| TATTAAGCGCAGCAATAGGA+AGG | 0.568531 | 7_2:+19450687 | None:intergenic |
| GAGAGAGTTTCCACATGTGA+TGG | 0.576485 | 7_2:-19450467 | Msa1051790:CDS |
| TTGTTACATATGCAAAAGCA+AGG | 0.588438 | 7_2:-19450288 | Msa1051790:CDS |
| GTCATCACAACTCAAGTCAC+GGG | 0.589333 | 7_2:-19450416 | Msa1051790:CDS |
| TGCGCTTAATAAACACATGA+AGG | 0.598707 | 7_2:-19450675 | Msa1051790:CDS |
| CTATGACCTTATACTTAGCA+AGG | 0.601401 | 7_2:-19450753 | Msa1051790:CDS |
| CCACCAGTTATATCCTTGGA+AGG | 0.602371 | 7_2:+19450569 | None:intergenic |
| GGTCATCACAACTCAAGTCA+CGG | 0.608686 | 7_2:-19450417 | Msa1051790:CDS |
| CCTTCCAAGGATATAACTGG+TGG | 0.618508 | 7_2:-19450569 | Msa1051790:CDS |
| CTCCAAACATCCATCACATG+TGG | 0.618959 | 7_2:+19450457 | None:intergenic |
| GATGACAAGTACTGGATATG+GGG | 0.631855 | 7_2:-19450339 | Msa1051790:CDS |
| GGAGTGGGTTAAAAGGAGTG+GGG | 0.639610 | 7_2:-19450438 | Msa1051790:CDS |
| CATGTGATGGATGTTTGGAG+TGG | 0.639686 | 7_2:-19450454 | Msa1051790:CDS |
| ATGTGATGGATGTTTGGAGT+GGG | 0.644389 | 7_2:-19450453 | Msa1051790:CDS |
| TGTTACATATGCAAAAGCAA+GGG | 0.651007 | 7_2:-19450287 | Msa1051790:CDS |
| AAAGGTATAAAGATCTACAT+GGG | 0.652631 | 7_2:-19450605 | Msa1051790:CDS |
| TGGAAAGGGAGTCGAGTCAG+CGG | 0.657429 | 7_2:+19450253 | None:intergenic |
| CTTCCAAGGATATAACTGGT+GGG | 0.673279 | 7_2:-19450568 | Msa1051790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTATAACTTCATTTTA+AGG | - | chr7_2:19451216-19451235 | Msa1051790:intron | 10.0% |
| !! | AATTAATTATATCATTCAAA+TGG | + | chr7_2:19451298-19451317 | Msa1051800:intron | 10.0% |
| !!! | TAATTTATAACTTCATTTTA+AGG | - | chr7_2:19451216-19451235 | Msa1051790:intron | 10.0% |
| !! | AATTAATTATATCATTCAAA+TGG | + | chr7_2:19451298-19451317 | Msa1051800:intron | 10.0% |
| !! | TTAGAAAATTGTTTATGCTA+TGG | - | chr7_2:19450428-19450447 | Msa1051790:CDS | 20.0% |
| !! | ATACAATAGAATAACTTTCT+AGG | + | chr7_2:19450486-19450505 | None:intergenic | 20.0% |
| !! | CAGATCTAAACATTATATAT+TGG | + | chr7_2:19450642-19450661 | None:intergenic | 20.0% |
| !!! | ACTTTATCGCTTATAAATTT+TGG | - | chr7_2:19450836-19450855 | Msa1051790:CDS | 20.0% |
| !!! | TAACATTTTCCAAACAAAAT+AGG | + | chr7_2:19450955-19450974 | None:intergenic | 20.0% |
| !!! | CTTTATACCTTTGTTTTTAA+TGG | + | chr7_2:19451571-19451590 | Msa1051800:intron | 20.0% |
| !! | TTAGAAAATTGTTTATGCTA+TGG | - | chr7_2:19450428-19450447 | Msa1051790:CDS | 20.0% |
| !! | ATACAATAGAATAACTTTCT+AGG | + | chr7_2:19450486-19450505 | None:intergenic | 20.0% |
| !! | CAGATCTAAACATTATATAT+TGG | + | chr7_2:19450642-19450661 | None:intergenic | 20.0% |
| !!! | ACTTTATCGCTTATAAATTT+TGG | - | chr7_2:19450836-19450855 | Msa1051790:CDS | 20.0% |
| !!! | TAACATTTTCCAAACAAAAT+AGG | + | chr7_2:19450955-19450974 | None:intergenic | 20.0% |
| !!! | CTTTATACCTTTGTTTTTAA+TGG | + | chr7_2:19451571-19451590 | Msa1051800:intron | 20.0% |
| ! | TGATACAATAAGGAGAAAAA+CGG | + | chr7_2:19450160-19450179 | None:intergenic | 25.0% |
| !! | GTACTGTTGTTTATAGTTTA+TGG | - | chr7_2:19450450-19450469 | Msa1051790:CDS | 25.0% |
| ! | CTAAACATTATATATTGGTG+TGG | + | chr7_2:19450637-19450656 | None:intergenic | 25.0% |
| !!! | CTTTTGGTGTTTTTATTCAA+AGG | - | chr7_2:19450804-19450823 | Msa1051790:CDS | 25.0% |
| !!! | TGTTTTTATTCAAAGGTTTC+TGG | - | chr7_2:19450811-19450830 | Msa1051790:CDS | 25.0% |
| ! | AAGAAACCAAATATAGCATA+AGG | - | chr7_2:19451000-19451019 | Msa1051790:intron | 25.0% |
| ! | GAACATGGAAAAAACAAAAT+AGG | + | chr7_2:19451139-19451158 | Msa1051800:intron | 25.0% |
| !! | TTTGACATTTTTCTCTTGTA+AGG | - | chr7_2:19451327-19451346 | Msa1051790:intron | 25.0% |
| !! | TATAAACAAGAGTATGGTAA+AGG | - | chr7_2:19451536-19451555 | Msa1051790:intron | 25.0% |
| !!! | ATACCTTTGTTTTTAATGGA+AGG | + | chr7_2:19451567-19451586 | Msa1051800:intron | 25.0% |
| !! | AAAGGTATAAAGATCTACAT+GGG | - | chr7_2:19451579-19451598 | Msa1051790:intron | 25.0% |
| ! | TGATACAATAAGGAGAAAAA+CGG | + | chr7_2:19450160-19450179 | None:intergenic | 25.0% |
| !! | GTACTGTTGTTTATAGTTTA+TGG | - | chr7_2:19450450-19450469 | Msa1051790:CDS | 25.0% |
| ! | CTAAACATTATATATTGGTG+TGG | + | chr7_2:19450637-19450656 | None:intergenic | 25.0% |
| !!! | CTTTTGGTGTTTTTATTCAA+AGG | - | chr7_2:19450804-19450823 | Msa1051790:CDS | 25.0% |
| !!! | TGTTTTTATTCAAAGGTTTC+TGG | - | chr7_2:19450811-19450830 | Msa1051790:CDS | 25.0% |
| ! | AAGAAACCAAATATAGCATA+AGG | - | chr7_2:19451000-19451019 | Msa1051790:intron | 25.0% |
| ! | GAACATGGAAAAAACAAAAT+AGG | + | chr7_2:19451139-19451158 | Msa1051800:intron | 25.0% |
| !! | TTTGACATTTTTCTCTTGTA+AGG | - | chr7_2:19451327-19451346 | Msa1051790:intron | 25.0% |
| !! | TATAAACAAGAGTATGGTAA+AGG | - | chr7_2:19451536-19451555 | Msa1051790:intron | 25.0% |
| !!! | ATACCTTTGTTTTTAATGGA+AGG | + | chr7_2:19451567-19451586 | Msa1051800:intron | 25.0% |
| !! | AAAGGTATAAAGATCTACAT+GGG | - | chr7_2:19451579-19451598 | Msa1051790:intron | 25.0% |
| AAGCAGTGCATATAACAAAT+AGG | + | chr7_2:19450134-19450153 | None:intergenic | 30.0% | |
| ! | AATGGGTTTCTGATACAATA+AGG | + | chr7_2:19450170-19450189 | None:intergenic | 30.0% |
| TATTGTATCAGAAACCCATT+TGG | - | chr7_2:19450170-19450189 | Msa1051790:CDS | 30.0% | |
| !! | TGCTATTTCATCATGATTCA+TGG | - | chr7_2:19450781-19450800 | Msa1051790:CDS | 30.0% |
| CAAAGTCCTTATGCTATATT+TGG | + | chr7_2:19451009-19451028 | Msa1051800:intron | 30.0% | |
| CAAATATAGCATAAGGACTT+TGG | - | chr7_2:19451007-19451026 | Msa1051790:intron | 30.0% | |
| ACTGGTTAAGGAAACAAAAA+AGG | + | chr7_2:19451091-19451110 | Msa1051800:intron | 30.0% | |
| ! | AGTTTTCCTTGCTAAGTATA+AGG | + | chr7_2:19451440-19451459 | Msa1051800:intron | 30.0% |
| CTTCCTTCCATTAAAAACAA+AGG | - | chr7_2:19451561-19451580 | Msa1051790:intron | 30.0% | |
| ! | CAAAGGTATAAAGATCTACA+TGG | - | chr7_2:19451578-19451597 | Msa1051790:intron | 30.0% |
| ! | AGAAGAGATTTTGCAAACTT+TGG | - | chr7_2:19451800-19451819 | Msa1051790:intron | 30.0% |
| TTGTTACATATGCAAAAGCA+AGG | - | chr7_2:19451896-19451915 | Msa1051790:intron | 30.0% | |
| TGTTACATATGCAAAAGCAA+GGG | - | chr7_2:19451897-19451916 | Msa1051790:intron | 30.0% | |
| TGACAAGAAAAACATGGAAA+GGG | + | chr7_2:19451948-19451967 | Msa1051800:intron | 30.0% | |
| TTGACAAGAAAAACATGGAA+AGG | + | chr7_2:19451949-19451968 | Msa1051800:intron | 30.0% | |
| ! | TTCCATGTTTTTCTTGTCAA+CGG | - | chr7_2:19451949-19451968 | Msa1051790:intron | 30.0% |
| TGAAAATAGACACATGTTGT+TGG | + | chr7_2:19452008-19452027 | Msa1051800:intron | 30.0% | |
| ! | CATGTGTCTATTTTCAGAAA+TGG | - | chr7_2:19452012-19452031 | Msa1051790:CDS | 30.0% |
| ! | TGTCTATTTTCAGAAATGGT+TGG | - | chr7_2:19452016-19452035 | Msa1051790:CDS | 30.0% |
| AAATGGTTGGATTTCTGAAT+GGG | - | chr7_2:19452029-19452048 | Msa1051790:CDS | 30.0% | |
| AAGCAGTGCATATAACAAAT+AGG | + | chr7_2:19450134-19450153 | None:intergenic | 30.0% | |
| ! | AATGGGTTTCTGATACAATA+AGG | + | chr7_2:19450170-19450189 | None:intergenic | 30.0% |
| TATTGTATCAGAAACCCATT+TGG | - | chr7_2:19450170-19450189 | Msa1051790:CDS | 30.0% | |
| !! | TGCTATTTCATCATGATTCA+TGG | - | chr7_2:19450781-19450800 | Msa1051790:CDS | 30.0% |
| CAAAGTCCTTATGCTATATT+TGG | + | chr7_2:19451009-19451028 | Msa1051800:intron | 30.0% | |
| CAAATATAGCATAAGGACTT+TGG | - | chr7_2:19451007-19451026 | Msa1051790:intron | 30.0% | |
| ACTGGTTAAGGAAACAAAAA+AGG | + | chr7_2:19451091-19451110 | Msa1051800:intron | 30.0% | |
| ! | AGTTTTCCTTGCTAAGTATA+AGG | + | chr7_2:19451440-19451459 | Msa1051800:intron | 30.0% |
| CTTCCTTCCATTAAAAACAA+AGG | - | chr7_2:19451561-19451580 | Msa1051790:intron | 30.0% | |
| ! | CAAAGGTATAAAGATCTACA+TGG | - | chr7_2:19451578-19451597 | Msa1051790:intron | 30.0% |
| ! | AGAAGAGATTTTGCAAACTT+TGG | - | chr7_2:19451800-19451819 | Msa1051790:intron | 30.0% |
| TTGTTACATATGCAAAAGCA+AGG | - | chr7_2:19451896-19451915 | Msa1051790:intron | 30.0% | |
| TGTTACATATGCAAAAGCAA+GGG | - | chr7_2:19451897-19451916 | Msa1051790:intron | 30.0% | |
| TGACAAGAAAAACATGGAAA+GGG | + | chr7_2:19451948-19451967 | Msa1051800:intron | 30.0% | |
| TTGACAAGAAAAACATGGAA+AGG | + | chr7_2:19451949-19451968 | Msa1051800:intron | 30.0% | |
| ! | TTCCATGTTTTTCTTGTCAA+CGG | - | chr7_2:19451949-19451968 | Msa1051790:intron | 30.0% |
| TGAAAATAGACACATGTTGT+TGG | + | chr7_2:19452008-19452027 | Msa1051800:intron | 30.0% | |
| ! | CATGTGTCTATTTTCAGAAA+TGG | - | chr7_2:19452012-19452031 | Msa1051790:CDS | 30.0% |
| ! | TGTCTATTTTCAGAAATGGT+TGG | - | chr7_2:19452016-19452035 | Msa1051790:CDS | 30.0% |
| AAATGGTTGGATTTCTGAAT+GGG | - | chr7_2:19452029-19452048 | Msa1051790:CDS | 30.0% | |
| ATTTAGCGTGAACAAAGAGA+GGG | + | chr7_2:19450273-19450292 | None:intergenic | 35.0% | |
| AATTTAGCGTGAACAAAGAG+AGG | + | chr7_2:19450274-19450293 | None:intergenic | 35.0% | |
| ! | CTTCTTTGGTTTCTTTGTGA+TGG | - | chr7_2:19450569-19450588 | Msa1051790:CDS | 35.0% |
| AATTGATCAATGCCTTACCA+GGG | + | chr7_2:19450666-19450685 | None:intergenic | 35.0% | |
| AAATTGATCAATGCCTTACC+AGG | + | chr7_2:19450667-19450686 | None:intergenic | 35.0% | |
| ! | TCATCATGATTCATGGCTTT+TGG | - | chr7_2:19450788-19450807 | Msa1051790:CDS | 35.0% |
| ! | GTCATAGTGCCTATTTTGTT+TGG | - | chr7_2:19450943-19450962 | Msa1051790:intron | 35.0% |
| CCATGTTCCAAAATTTGAGA+CGG | - | chr7_2:19451151-19451170 | Msa1051790:intron | 35.0% | |
| ! | TTCCAAAATTTGAGACGGAT+AGG | - | chr7_2:19451156-19451175 | Msa1051790:intron | 35.0% |
| ! | TCCAAAATTTGAGACGGATA+GGG | - | chr7_2:19451157-19451176 | Msa1051790:intron | 35.0% |
| ATGAAACGTTTGCAAGAATC+TGG | - | chr7_2:19451351-19451370 | Msa1051790:intron | 35.0% | |
| !! | TTTTTGTCGTTTCTGTTGAG+AGG | + | chr7_2:19451379-19451398 | Msa1051800:intron | 35.0% |
| ACAGAAACGACAAAAACTGT+CGG | - | chr7_2:19451383-19451402 | Msa1051790:intron | 35.0% | |
| CTATGACCTTATACTTAGCA+AGG | - | chr7_2:19451431-19451450 | Msa1051790:intron | 35.0% | |
| ATACTTAGCAAGGAAAACTC+TGG | - | chr7_2:19451441-19451460 | Msa1051790:intron | 35.0% | |
| TACTTAGCAAGGAAAACTCT+GGG | - | chr7_2:19451442-19451461 | Msa1051790:intron | 35.0% | |
| TGTTTATTAAGCGCAGCAAT+AGG | + | chr7_2:19451504-19451523 | Msa1051800:intron | 35.0% | |
| TGCGCTTAATAAACACATGA+AGG | - | chr7_2:19451509-19451528 | Msa1051790:intron | 35.0% | |
| GGCACTTATAAACAAGAGTA+TGG | - | chr7_2:19451530-19451549 | Msa1051790:intron | 35.0% | |
| ATAATGCAGATGACAAGTAC+TGG | - | chr7_2:19451837-19451856 | Msa1051790:intron | 35.0% | |
| !! | AGATGACAAGTACTGGATAT+GGG | - | chr7_2:19451844-19451863 | Msa1051790:intron | 35.0% |
| ! | GATTTTGCATCTATTCCTGT+TGG | - | chr7_2:19451867-19451886 | Msa1051790:intron | 35.0% |
| ! | ATGTAACAAGTTTTGCCAAC+AGG | + | chr7_2:19451885-19451904 | Msa1051800:intron | 35.0% |
| ATCCGTTGACAAGAAAAACA+TGG | + | chr7_2:19451954-19451973 | Msa1051800:intron | 35.0% | |
| GAAATGGTTGGATTTCTGAA+TGG | - | chr7_2:19452028-19452047 | Msa1051790:CDS | 35.0% | |
| ATTTAGCGTGAACAAAGAGA+GGG | + | chr7_2:19450273-19450292 | None:intergenic | 35.0% | |
| AATTTAGCGTGAACAAAGAG+AGG | + | chr7_2:19450274-19450293 | None:intergenic | 35.0% | |
| ! | CTTCTTTGGTTTCTTTGTGA+TGG | - | chr7_2:19450569-19450588 | Msa1051790:CDS | 35.0% |
| AATTGATCAATGCCTTACCA+GGG | + | chr7_2:19450666-19450685 | None:intergenic | 35.0% | |
| AAATTGATCAATGCCTTACC+AGG | + | chr7_2:19450667-19450686 | None:intergenic | 35.0% | |
| ! | TCATCATGATTCATGGCTTT+TGG | - | chr7_2:19450788-19450807 | Msa1051790:CDS | 35.0% |
| ! | GTCATAGTGCCTATTTTGTT+TGG | - | chr7_2:19450943-19450962 | Msa1051790:intron | 35.0% |
| CCATGTTCCAAAATTTGAGA+CGG | - | chr7_2:19451151-19451170 | Msa1051790:intron | 35.0% | |
| ! | TTCCAAAATTTGAGACGGAT+AGG | - | chr7_2:19451156-19451175 | Msa1051790:intron | 35.0% |
| ! | TCCAAAATTTGAGACGGATA+GGG | - | chr7_2:19451157-19451176 | Msa1051790:intron | 35.0% |
| ATGAAACGTTTGCAAGAATC+TGG | - | chr7_2:19451351-19451370 | Msa1051790:intron | 35.0% | |
| !! | TTTTTGTCGTTTCTGTTGAG+AGG | + | chr7_2:19451379-19451398 | Msa1051800:intron | 35.0% |
| ACAGAAACGACAAAAACTGT+CGG | - | chr7_2:19451383-19451402 | Msa1051790:intron | 35.0% | |
| CTATGACCTTATACTTAGCA+AGG | - | chr7_2:19451431-19451450 | Msa1051790:intron | 35.0% | |
| ATACTTAGCAAGGAAAACTC+TGG | - | chr7_2:19451441-19451460 | Msa1051790:intron | 35.0% | |
| TACTTAGCAAGGAAAACTCT+GGG | - | chr7_2:19451442-19451461 | Msa1051790:intron | 35.0% | |
| TGTTTATTAAGCGCAGCAAT+AGG | + | chr7_2:19451504-19451523 | Msa1051800:intron | 35.0% | |
| TGCGCTTAATAAACACATGA+AGG | - | chr7_2:19451509-19451528 | Msa1051790:intron | 35.0% | |
| GGCACTTATAAACAAGAGTA+TGG | - | chr7_2:19451530-19451549 | Msa1051790:intron | 35.0% | |
| ATAATGCAGATGACAAGTAC+TGG | - | chr7_2:19451837-19451856 | Msa1051790:intron | 35.0% | |
| !! | AGATGACAAGTACTGGATAT+GGG | - | chr7_2:19451844-19451863 | Msa1051790:intron | 35.0% |
| ! | GATTTTGCATCTATTCCTGT+TGG | - | chr7_2:19451867-19451886 | Msa1051790:intron | 35.0% |
| ! | ATGTAACAAGTTTTGCCAAC+AGG | + | chr7_2:19451885-19451904 | Msa1051800:intron | 35.0% |
| ATCCGTTGACAAGAAAAACA+TGG | + | chr7_2:19451954-19451973 | Msa1051800:intron | 35.0% | |
| GAAATGGTTGGATTTCTGAA+TGG | - | chr7_2:19452028-19452047 | Msa1051790:CDS | 35.0% | |
| ! | CCGTGAAAAATGGAGTTTTC+CGG | + | chr7_2:19450208-19450227 | None:intergenic | 40.0% |
| !! | CCGGAAAACTCCATTTTTCA+CGG | - | chr7_2:19450205-19450224 | Msa1051790:CDS | 40.0% |
| !! | GAAATAGGTTCTGAATGTGC+AGG | + | chr7_2:19450536-19450555 | None:intergenic | 40.0% |
| AGAACCTATTTCCCTTCCTA+TGG | - | chr7_2:19450544-19450563 | Msa1051790:CDS | 40.0% | |
| !! | AGAAACCAAAGAAGCACCAT+AGG | + | chr7_2:19450563-19450582 | None:intergenic | 40.0% |
| ATAATGTTTAGATCTGCCCC+TGG | - | chr7_2:19450646-19450665 | Msa1051790:CDS | 40.0% | |
| ATTGATCAATGCCTTACCAG+GGG | + | chr7_2:19450665-19450684 | None:intergenic | 40.0% | |
| AAAATGTTAACTAGTGCCCC+CGG | - | chr7_2:19450966-19450985 | Msa1051790:intron | 40.0% | |
| !!! | CCGTCTCAAATTTTGGAACA+TGG | + | chr7_2:19451154-19451173 | Msa1051800:intron | 40.0% |
| ! | ACCCTATCCGTCTCAAATTT+TGG | + | chr7_2:19451161-19451180 | Msa1051800:intron | 40.0% |
| TAGAGTATACGCTCTTCATC+TGG | + | chr7_2:19451414-19451433 | Msa1051800:intron | 40.0% | |
| TATTAAGCGCAGCAATAGGA+AGG | + | chr7_2:19451500-19451519 | Msa1051800:intron | 40.0% | |
| AACAGAATTTGAGCCTTCCA+AGG | - | chr7_2:19451602-19451621 | Msa1051790:intron | 40.0% | |
| CTTCCAAGGATATAACTGGT+GGG | - | chr7_2:19451616-19451635 | Msa1051790:intron | 40.0% | |
| GTGCTTGCAATGCATTTCAT+TGG | - | chr7_2:19451695-19451714 | Msa1051790:intron | 40.0% | |
| !! | TTCCACATGTGATGGATGTT+TGG | - | chr7_2:19451725-19451744 | Msa1051790:intron | 40.0% |
| !! | ATGTGATGGATGTTTGGAGT+GGG | - | chr7_2:19451731-19451750 | Msa1051790:intron | 40.0% |
| !! | GATGTTTGGAGTGGGTTAAA+AGG | - | chr7_2:19451739-19451758 | Msa1051790:intron | 40.0% |
| !! | CAGATGACAAGTACTGGATA+TGG | - | chr7_2:19451843-19451862 | Msa1051790:intron | 40.0% |
| !! | GATGACAAGTACTGGATATG+GGG | - | chr7_2:19451845-19451864 | Msa1051790:intron | 40.0% |
| ! | ACGGATGAGCTTTTGTTCAA+CGG | - | chr7_2:19451968-19451987 | Msa1051790:CDS | 40.0% |
| ! | ATGAGCTTTTGTTCAACGGA+TGG | - | chr7_2:19451972-19451991 | Msa1051790:CDS | 40.0% |
| ! | CCGTGAAAAATGGAGTTTTC+CGG | + | chr7_2:19450208-19450227 | None:intergenic | 40.0% |
| !! | CCGGAAAACTCCATTTTTCA+CGG | - | chr7_2:19450205-19450224 | Msa1051790:CDS | 40.0% |
| !! | GAAATAGGTTCTGAATGTGC+AGG | + | chr7_2:19450536-19450555 | None:intergenic | 40.0% |
| AGAACCTATTTCCCTTCCTA+TGG | - | chr7_2:19450544-19450563 | Msa1051790:CDS | 40.0% | |
| !! | AGAAACCAAAGAAGCACCAT+AGG | + | chr7_2:19450563-19450582 | None:intergenic | 40.0% |
| ATAATGTTTAGATCTGCCCC+TGG | - | chr7_2:19450646-19450665 | Msa1051790:CDS | 40.0% | |
| ATTGATCAATGCCTTACCAG+GGG | + | chr7_2:19450665-19450684 | None:intergenic | 40.0% | |
| AAAATGTTAACTAGTGCCCC+CGG | - | chr7_2:19450966-19450985 | Msa1051790:intron | 40.0% | |
| !!! | CCGTCTCAAATTTTGGAACA+TGG | + | chr7_2:19451154-19451173 | Msa1051800:intron | 40.0% |
| ! | ACCCTATCCGTCTCAAATTT+TGG | + | chr7_2:19451161-19451180 | Msa1051800:intron | 40.0% |
| TAGAGTATACGCTCTTCATC+TGG | + | chr7_2:19451414-19451433 | Msa1051800:intron | 40.0% | |
| TATTAAGCGCAGCAATAGGA+AGG | + | chr7_2:19451500-19451519 | Msa1051800:intron | 40.0% | |
| AACAGAATTTGAGCCTTCCA+AGG | - | chr7_2:19451602-19451621 | Msa1051790:intron | 40.0% | |
| CTTCCAAGGATATAACTGGT+GGG | - | chr7_2:19451616-19451635 | Msa1051790:intron | 40.0% | |
| GTGCTTGCAATGCATTTCAT+TGG | - | chr7_2:19451695-19451714 | Msa1051790:intron | 40.0% | |
| !! | TTCCACATGTGATGGATGTT+TGG | - | chr7_2:19451725-19451744 | Msa1051790:intron | 40.0% |
| !! | ATGTGATGGATGTTTGGAGT+GGG | - | chr7_2:19451731-19451750 | Msa1051790:intron | 40.0% |
| !! | GATGTTTGGAGTGGGTTAAA+AGG | - | chr7_2:19451739-19451758 | Msa1051790:intron | 40.0% |
| !! | CAGATGACAAGTACTGGATA+TGG | - | chr7_2:19451843-19451862 | Msa1051790:intron | 40.0% |
| !! | GATGACAAGTACTGGATATG+GGG | - | chr7_2:19451845-19451864 | Msa1051790:intron | 40.0% |
| ! | ACGGATGAGCTTTTGTTCAA+CGG | - | chr7_2:19451968-19451987 | Msa1051790:CDS | 40.0% |
| ! | ATGAGCTTTTGTTCAACGGA+TGG | - | chr7_2:19451972-19451991 | Msa1051790:CDS | 40.0% |
| !! | CCATTTTTCACGGCGAGAAT+CGG | - | chr7_2:19450215-19450234 | Msa1051790:CDS | 45.0% |
| AGCACCATAGGAAGGGAAAT+AGG | + | chr7_2:19450551-19450570 | None:intergenic | 45.0% | |
| !! | CCAAAGAAGCACCATAGGAA+GGG | + | chr7_2:19450558-19450577 | None:intergenic | 45.0% |
| !! | ACCAAAGAAGCACCATAGGA+AGG | + | chr7_2:19450559-19450578 | None:intergenic | 45.0% |
| CTGTGGCTTCATGGTTACAA+TGG | - | chr7_2:19450747-19450766 | Msa1051790:CDS | 45.0% | |
| AAATGTTAACTAGTGCCCCC+GGG | - | chr7_2:19450967-19450986 | Msa1051790:intron | 45.0% | |
| GAGCCTTCCAAGGATATAAC+TGG | - | chr7_2:19451612-19451631 | Msa1051790:intron | 45.0% | |
| CCACCAGTTATATCCTTGGA+AGG | + | chr7_2:19451618-19451637 | Msa1051800:intron | 45.0% | |
| CCTTCCAAGGATATAACTGG+TGG | - | chr7_2:19451615-19451634 | Msa1051790:intron | 45.0% | |
| ATGCCCACCAGTTATATCCT+TGG | + | chr7_2:19451622-19451641 | Msa1051800:intron | 45.0% | |
| ! | GTGGGCATTTTTACAGCGAA+GGG | - | chr7_2:19451634-19451653 | Msa1051790:intron | 45.0% |
| GAGAGAGTTTCCACATGTGA+TGG | - | chr7_2:19451717-19451736 | Msa1051790:intron | 45.0% | |
| CTCCAAACATCCATCACATG+TGG | + | chr7_2:19451730-19451749 | Msa1051800:intron | 45.0% | |
| !! | CATGTGATGGATGTTTGGAG+TGG | - | chr7_2:19451730-19451749 | Msa1051790:intron | 45.0% |
| !! | TTGGAGTGGGTTAAAAGGAG+TGG | - | chr7_2:19451744-19451763 | Msa1051790:intron | 45.0% |
| !! | TGGAGTGGGTTAAAAGGAGT+GGG | - | chr7_2:19451745-19451764 | Msa1051790:intron | 45.0% |
| GGTCATCACAACTCAAGTCA+CGG | - | chr7_2:19451767-19451786 | Msa1051790:intron | 45.0% | |
| GTCATCACAACTCAAGTCAC+GGG | - | chr7_2:19451768-19451787 | Msa1051790:intron | 45.0% | |
| !! | CCATTTTTCACGGCGAGAAT+CGG | - | chr7_2:19450215-19450234 | Msa1051790:CDS | 45.0% |
| AGCACCATAGGAAGGGAAAT+AGG | + | chr7_2:19450551-19450570 | None:intergenic | 45.0% | |
| !! | CCAAAGAAGCACCATAGGAA+GGG | + | chr7_2:19450558-19450577 | None:intergenic | 45.0% |
| !! | ACCAAAGAAGCACCATAGGA+AGG | + | chr7_2:19450559-19450578 | None:intergenic | 45.0% |
| CTGTGGCTTCATGGTTACAA+TGG | - | chr7_2:19450747-19450766 | Msa1051790:CDS | 45.0% | |
| AAATGTTAACTAGTGCCCCC+GGG | - | chr7_2:19450967-19450986 | Msa1051790:intron | 45.0% | |
| GAGCCTTCCAAGGATATAAC+TGG | - | chr7_2:19451612-19451631 | Msa1051790:intron | 45.0% | |
| CCACCAGTTATATCCTTGGA+AGG | + | chr7_2:19451618-19451637 | Msa1051800:intron | 45.0% | |
| CCTTCCAAGGATATAACTGG+TGG | - | chr7_2:19451615-19451634 | Msa1051790:intron | 45.0% | |
| ATGCCCACCAGTTATATCCT+TGG | + | chr7_2:19451622-19451641 | Msa1051800:intron | 45.0% | |
| ! | GTGGGCATTTTTACAGCGAA+GGG | - | chr7_2:19451634-19451653 | Msa1051790:intron | 45.0% |
| GAGAGAGTTTCCACATGTGA+TGG | - | chr7_2:19451717-19451736 | Msa1051790:intron | 45.0% | |
| CTCCAAACATCCATCACATG+TGG | + | chr7_2:19451730-19451749 | Msa1051800:intron | 45.0% | |
| !! | CATGTGATGGATGTTTGGAG+TGG | - | chr7_2:19451730-19451749 | Msa1051790:intron | 45.0% |
| !! | TTGGAGTGGGTTAAAAGGAG+TGG | - | chr7_2:19451744-19451763 | Msa1051790:intron | 45.0% |
| !! | TGGAGTGGGTTAAAAGGAGT+GGG | - | chr7_2:19451745-19451764 | Msa1051790:intron | 45.0% |
| GGTCATCACAACTCAAGTCA+CGG | - | chr7_2:19451767-19451786 | Msa1051790:intron | 45.0% | |
| GTCATCACAACTCAAGTCAC+GGG | - | chr7_2:19451768-19451787 | Msa1051790:intron | 45.0% | |
| GGCGAAGTGTGACTCCAAAT+GGG | + | chr7_2:19450187-19450206 | None:intergenic | 50.0% | |
| ! | CATTTGGAGTCACACTTCGC+CGG | - | chr7_2:19450186-19450205 | Msa1051790:CDS | 50.0% |
| CCGATTCTCGCCGTGAAAAA+TGG | + | chr7_2:19450218-19450237 | None:intergenic | 50.0% | |
| ! | TTTTTCACGGCGAGAATCGG+TGG | - | chr7_2:19450218-19450237 | Msa1051790:CDS | 50.0% |
| GCGTGAACAAAGAGAGGGAA+AGG | + | chr7_2:19450268-19450287 | None:intergenic | 50.0% | |
| CCCTTCCTATGGTGCTTCTT+TGG | - | chr7_2:19450555-19450574 | Msa1051790:CDS | 50.0% | |
| GTTTAGATCTGCCCCTGGTA+AGG | - | chr7_2:19450651-19450670 | Msa1051790:CDS | 50.0% | |
| ! | GCACATGACTGTGACTAGTC+CGG | - | chr7_2:19450719-19450738 | Msa1051790:CDS | 50.0% |
| GTAACCATGAAGCCACAGTG+CGG | + | chr7_2:19450745-19450764 | None:intergenic | 50.0% | |
| AATGTTAACTAGTGCCCCCG+GGG | - | chr7_2:19450968-19450987 | Msa1051790:intron | 50.0% | |
| TTTCTTTAACCAGTGCCCCG+GGG | + | chr7_2:19450986-19451005 | None:intergenic | 50.0% | |
| GTTTCTTTAACCAGTGCCCC+GGG | + | chr7_2:19450987-19451006 | None:intergenic | 50.0% | |
| GGTTTCTTTAACCAGTGCCC+CGG | + | chr7_2:19450988-19451007 | None:intergenic | 50.0% | |
| GTTTCCTTAACCAGTGCCCT+CGG | - | chr7_2:19451096-19451115 | Msa1051790:intron | 50.0% | |
| TTTCCTTAACCAGTGCCCTC+GGG | - | chr7_2:19451097-19451116 | Msa1051790:intron | 50.0% | |
| ! | GGTGGGCATTTTTACAGCGA+AGG | - | chr7_2:19451633-19451652 | Msa1051790:intron | 50.0% |
| !! | GGAGTGGGTTAAAAGGAGTG+GGG | - | chr7_2:19451746-19451765 | Msa1051790:intron | 50.0% |
| GGCGAAGTGTGACTCCAAAT+GGG | + | chr7_2:19450187-19450206 | None:intergenic | 50.0% | |
| ! | CATTTGGAGTCACACTTCGC+CGG | - | chr7_2:19450186-19450205 | Msa1051790:CDS | 50.0% |
| CCGATTCTCGCCGTGAAAAA+TGG | + | chr7_2:19450218-19450237 | None:intergenic | 50.0% | |
| ! | TTTTTCACGGCGAGAATCGG+TGG | - | chr7_2:19450218-19450237 | Msa1051790:CDS | 50.0% |
| GCGTGAACAAAGAGAGGGAA+AGG | + | chr7_2:19450268-19450287 | None:intergenic | 50.0% | |
| CCCTTCCTATGGTGCTTCTT+TGG | - | chr7_2:19450555-19450574 | Msa1051790:CDS | 50.0% | |
| GTTTAGATCTGCCCCTGGTA+AGG | - | chr7_2:19450651-19450670 | Msa1051790:CDS | 50.0% | |
| ! | GCACATGACTGTGACTAGTC+CGG | - | chr7_2:19450719-19450738 | Msa1051790:CDS | 50.0% |
| GTAACCATGAAGCCACAGTG+CGG | + | chr7_2:19450745-19450764 | None:intergenic | 50.0% | |
| AATGTTAACTAGTGCCCCCG+GGG | - | chr7_2:19450968-19450987 | Msa1051790:intron | 50.0% | |
| TTTCTTTAACCAGTGCCCCG+GGG | + | chr7_2:19450986-19451005 | None:intergenic | 50.0% | |
| GTTTCTTTAACCAGTGCCCC+GGG | + | chr7_2:19450987-19451006 | None:intergenic | 50.0% | |
| GGTTTCTTTAACCAGTGCCC+CGG | + | chr7_2:19450988-19451007 | None:intergenic | 50.0% | |
| GTTTCCTTAACCAGTGCCCT+CGG | - | chr7_2:19451096-19451115 | Msa1051790:intron | 50.0% | |
| TTTCCTTAACCAGTGCCCTC+GGG | - | chr7_2:19451097-19451116 | Msa1051790:intron | 50.0% | |
| ! | GGTGGGCATTTTTACAGCGA+AGG | - | chr7_2:19451633-19451652 | Msa1051790:intron | 50.0% |
| !! | GGAGTGGGTTAAAAGGAGTG+GGG | - | chr7_2:19451746-19451765 | Msa1051790:intron | 50.0% |
| CGGCGAAGTGTGACTCCAAA+TGG | + | chr7_2:19450188-19450207 | None:intergenic | 55.0% | |
| TTCTTTAACCAGTGCCCCGG+GGG | + | chr7_2:19450985-19451004 | None:intergenic | 55.0% | |
| TTCCTTAACCAGTGCCCTCG+GGG | - | chr7_2:19451098-19451117 | Msa1051790:intron | 55.0% | |
| CTTGTTAACCAGTGCCCCGA+GGG | + | chr7_2:19451115-19451134 | Msa1051800:intron | 55.0% | |
| TCTTGTTAACCAGTGCCCCG+AGG | + | chr7_2:19451116-19451135 | Msa1051800:intron | 55.0% | |
| TGGAAAGGGAGTCGAGTCAG+CGG | + | chr7_2:19451934-19451953 | Msa1051800:intron | 55.0% | |
| CGGCGAAGTGTGACTCCAAA+TGG | + | chr7_2:19450188-19450207 | None:intergenic | 55.0% | |
| TTCTTTAACCAGTGCCCCGG+GGG | + | chr7_2:19450985-19451004 | None:intergenic | 55.0% | |
| TTCCTTAACCAGTGCCCTCG+GGG | - | chr7_2:19451098-19451117 | Msa1051790:intron | 55.0% | |
| CTTGTTAACCAGTGCCCCGA+GGG | + | chr7_2:19451115-19451134 | Msa1051800:intron | 55.0% | |
| TCTTGTTAACCAGTGCCCCG+AGG | + | chr7_2:19451116-19451135 | Msa1051800:intron | 55.0% | |
| TGGAAAGGGAGTCGAGTCAG+CGG | + | chr7_2:19451934-19451953 | Msa1051800:intron | 55.0% | |
| ! | TGACTAGTCCGGCCGCACTG+TGG | - | chr7_2:19450730-19450749 | Msa1051790:CDS | 65.0% |
| CCATGAAGCCACAGTGCGGC+CGG | + | chr7_2:19450741-19450760 | None:intergenic | 65.0% | |
| !! | TGCCCCGAGGGCACTGGTTA+AGG | + | chr7_2:19451103-19451122 | Msa1051800:intron | 65.0% |
| ! | TGACTAGTCCGGCCGCACTG+TGG | - | chr7_2:19450730-19450749 | Msa1051790:CDS | 65.0% |
| CCATGAAGCCACAGTGCGGC+CGG | + | chr7_2:19450741-19450760 | None:intergenic | 65.0% | |
| !! | TGCCCCGAGGGCACTGGTTA+AGG | + | chr7_2:19451103-19451122 | Msa1051800:intron | 65.0% |
| CCGGCCGCACTGTGGCTTCA+TGG | - | chr7_2:19450738-19450757 | Msa1051790:CDS | 70.0% | |
| AACTAGTGCCCCCGGGGCAC+TGG | - | chr7_2:19450974-19450993 | Msa1051790:intron | 70.0% | |
| AACCAGTGCCCTCGGGGCAC+TGG | - | chr7_2:19451104-19451123 | Msa1051790:intron | 70.0% | |
| ! | AACCAGTGCCCCGAGGGCAC+TGG | + | chr7_2:19451109-19451128 | Msa1051800:intron | 70.0% |
| CCGGCCGCACTGTGGCTTCA+TGG | - | chr7_2:19450738-19450757 | Msa1051790:CDS | 70.0% | |
| AACTAGTGCCCCCGGGGCAC+TGG | - | chr7_2:19450974-19450993 | Msa1051790:intron | 70.0% | |
| AACCAGTGCCCTCGGGGCAC+TGG | - | chr7_2:19451104-19451123 | Msa1051790:intron | 70.0% | |
| ! | AACCAGTGCCCCGAGGGCAC+TGG | + | chr7_2:19451109-19451128 | Msa1051800:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 19450124 | 19452082 | 19450124 | ID=Msa1051790;Name=Msa1051790 |
| chr7_2 | mRNA | 19450124 | 19452082 | 19450124 | ID=Msa1051790-mRNA-1;Parent=Msa1051790;Name=Msa1051790-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|1|1|0|0|2|36|276 |
| chr7_2 | exon | 19450124 | 19450857 | 19450124 | ID=Msa1051790-mRNA-1:exon:4266;Parent=Msa1051790-mRNA-1 |
| chr7_2 | exon | 19451950 | 19452082 | 19451950 | ID=Msa1051790-mRNA-1:exon:4265;Parent=Msa1051790-mRNA-1 |
| chr7_2 | CDS | 19451950 | 19452082 | 19451950 | ID=Msa1051790-mRNA-1:cds;Parent=Msa1051790-mRNA-1 |
| chr7_2 | CDS | 19450160 | 19450857 | 19450160 | ID=Msa1051790-mRNA-1:cds;Parent=Msa1051790-mRNA-1 |
| chr7_2 | three_prime_UTR | 19450124 | 19450159 | 19450124 | ID=Msa1051790-mRNA-1:three_prime_utr;Parent=Msa1051790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
