AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1053240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1053240 MtrunA17_Chr7g0223231 92.857 350 24 1 1 349 1 350 0.0 675
Msa1053240 MtrunA17_Chr7g0223241 85.714 350 49 1 1 349 1 350 0.0 623
Msa1053240 MtrunA17_Chr4g0046531 62.606 353 125 3 1 346 1 353 1.62e-160 466
Msa1053240 MtrunA17_Chr4g0046531 63.277 354 123 3 1 347 363 716 5.53e-160 465
Msa1053240 MtrunA17_Chr1g0188391 53.933 356 151 6 3 346 4 358 6.03e-136 391
Msa1053240 MtrunA17_Chr7g0219141 52.825 354 158 4 2 347 3 355 2.18e-131 379
Msa1053240 MtrunA17_Chr7g0219161 53.936 343 149 4 3 337 4 345 7.35e-130 375
Msa1053240 MtrunA17_Chr1g0188371 49.558 339 161 5 1 329 2 340 4.31e-114 336
Msa1053240 MtrunA17_Chr4g0046361 46.610 354 178 5 5 347 6 359 2.17e-110 326
Msa1053240 MtrunA17_Chr4g0014641 48.603 358 171 5 3 347 4 361 8.53e-110 324
Msa1053240 MtrunA17_Chr5g0432301 45.810 358 183 6 1 347 1 358 1.70e-108 321
Msa1053240 MtrunA17_Chr4g0014561 48.045 358 173 5 3 347 4 361 1.90e-108 321
Msa1053240 MtrunA17_Chr5g0432251 46.218 357 182 6 1 347 1 357 7.15e-108 319
Msa1053240 MtrunA17_Chr4g0014681 47.765 358 174 5 3 347 4 361 1.36e-107 319
Msa1053240 MtrunA17_Chr4g0046341 49.304 359 168 6 3 347 4 362 4.39e-107 318
Msa1053240 MtrunA17_Chr4g0040621 44.633 354 188 4 1 347 15 367 2.98e-105 313
Msa1053240 MtrunA17_Chr5g0432241 45.014 351 184 5 6 347 8 358 6.62e-105 312
Msa1053240 MtrunA17_Chr4g0014661 47.863 351 174 5 5 347 6 355 3.96e-102 305
Msa1053240 MtrunA17_Chr4g0014591 47.293 351 176 5 5 347 6 355 3.74e-95 287
Msa1053240 MtrunA17_Chr5g0432211 42.775 346 179 7 9 347 10 343 2.68e-91 276
Msa1053240 MtrunA17_Chr5g0432261 40.936 342 177 3 9 347 6 325 1.02e-90 275
Msa1053240 MtrunA17_Chr3g0121301 37.500 336 196 8 19 345 27 357 2.14e-70 223
Msa1053240 MtrunA17_Chr4g0014601 43.750 256 135 5 5 252 6 260 2.40e-67 213
Msa1053240 MtrunA17_Chr4g0022021 35.569 343 206 9 15 346 27 365 8.53e-58 191
Msa1053240 MtrunA17_Chr4g0021981 33.918 342 213 8 15 346 27 365 6.65e-56 186
Msa1053240 MtrunA17_Chr7g0219171 60.305 131 51 1 217 347 117 246 1.29e-50 169
Msa1053240 MtrunA17_Chr7g0219171 51.304 115 53 2 3 116 4 116 6.55e-31 117
Msa1053240 MtrunA17_Chr3g0128011 32.861 353 215 12 1 335 55 403 3.94e-46 162
Msa1053240 MtrunA17_Chr5g0448091 31.056 322 203 8 29 335 32 349 3.42e-43 153
Msa1053240 MtrunA17_Chr1g0163611 29.714 350 199 8 17 335 21 354 2.10e-42 151
Msa1053240 MtrunA17_Chr1g0200491 30.488 328 199 8 29 335 38 357 4.24e-42 150
Msa1053240 MtrunA17_Chr1g0163621 29.745 353 195 7 17 335 35 368 3.20e-41 148
Msa1053240 MtrunA17_Chr7g0218301 28.909 339 215 8 29 344 38 373 4.97e-41 147
Msa1053240 MtrunA17_Chr7g0218271 28.319 339 217 8 29 344 38 373 6.26e-41 147
Msa1053240 MtrunA17_Chr7g0218261 27.928 333 220 8 29 344 37 366 8.66e-40 144
Msa1053240 MtrunA17_Chr7g0218211 29.114 316 207 7 29 330 37 349 2.01e-39 143
Msa1053240 MtrunA17_Chr1g0163601 29.429 350 200 9 17 335 21 354 2.50e-39 143
Msa1053240 MtrunA17_Chr8g0367441 26.012 346 236 9 3 331 17 359 3.93e-38 140
Msa1053240 MtrunA17_Chr7g0218131 27.515 338 216 8 29 344 38 368 1.21e-37 138
Msa1053240 MtrunA17_Chr7g0276401 29.412 323 211 8 25 334 42 360 5.63e-37 137
Msa1053240 MtrunA17_Chr7g0218181 27.445 317 208 10 29 330 38 347 9.36e-37 136
Msa1053240 MtrunA17_Chr8g0367491 26.168 321 219 7 25 330 40 357 1.34e-36 135
Msa1053240 MtrunA17_Chr8g0367501 26.857 350 229 10 11 337 10 355 2.18e-36 136
Msa1053240 MtrunA17_Chr7g0276411 26.608 342 230 8 4 330 8 343 8.26e-36 133
Msa1053240 MtrunA17_Chr2g0307521 26.791 321 215 7 29 334 32 347 4.04e-35 131
Msa1053240 MtrunA17_Chr8g0345851 30.435 253 152 6 91 330 30 271 4.66e-35 129
Msa1053240 MtrunA17_Chr3g0085201 28.221 326 216 7 32 344 30 350 5.65e-34 128
Msa1053240 MtrunA17_Chr8g0367451 25.797 345 236 9 3 330 16 357 1.35e-32 125
Msa1053240 MtrunA17_Chr8g0367381 27.517 298 184 8 3 287 17 295 3.86e-32 122
Msa1053240 MtrunA17_Chr3g0130061 29.240 342 203 11 29 346 29 355 1.11e-31 122
Msa1053240 MtrunA17_Chr3g0085211 26.498 317 216 7 32 335 43 355 1.63e-31 122
Msa1053240 MtrunA17_Chr3g0130011 28.529 340 208 12 29 346 29 355 2.13e-30 118
Msa1053240 MtrunA17_Chr2g0314271 28.070 342 210 11 29 348 26 353 6.94e-30 117
Msa1053240 MtrunA17_Chr4g0014611 58.163 98 41 0 250 347 8 105 8.62e-24 94.4
Msa1053240 MtrunA17_Chr4g0014671 54.128 109 50 0 239 347 24 132 2.59e-18 80.5
Msa1053240 MtrunA17_Chr6g0482291 32.051 156 92 5 177 330 14 157 2.66e-18 81.6
Msa1053240 MtrunA17_Chr8g0367401 38.298 94 58 0 156 249 17 110 3.11e-17 77.4
Msa1053240 MtrunA17_Chr8g0367461 37.500 96 56 2 236 330 1 93 4.75e-17 76.3
Msa1053240 MtrunA17_Chr1g0170941 50.000 66 33 0 182 247 11 76 1.06e-15 71.2
Msa1053240 MtrunA17_Chr4g0011691 44.444 81 41 3 251 330 140 217 1.08e-12 67.0
Msa1053240 MtrunA17_Chr4g0014621 56.250 64 28 0 284 347 197 260 1.52e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1053240 AT4G35150.1 36.311 347 168 12 14 345 12 320 2.09e-57 189
Msa1053240 AT4G35160.1 36.212 359 195 13 14 345 26 377 2.79e-52 177
Msa1053240 AT5G54160.1 31.339 351 221 11 1 335 1 347 1.58e-46 162
Msa1053240 AT1G51990.2 29.167 336 207 10 29 343 29 354 5.70e-39 142
Msa1053240 AT1G51990.1 29.167 336 207 10 29 343 29 354 8.92e-39 141
Msa1053240 AT1G33030.1 29.841 315 205 7 29 330 20 331 1.41e-37 138
Msa1053240 AT3G53140.1 29.586 338 211 7 29 346 26 356 8.51e-34 128
Msa1053240 AT1G77520.1 26.453 344 219 12 29 346 43 378 9.15e-32 123
Msa1053240 AT5G53810.1 30.347 346 206 12 29 347 39 376 1.50e-28 114
Msa1053240 AT1G63140.4 28.375 363 218 14 13 347 51 399 4.28e-28 113
Msa1053240 AT1G63140.2 28.375 363 218 14 13 347 31 379 4.33e-28 113
Msa1053240 AT1G62900.1 33.659 205 129 5 146 347 3 203 1.67e-27 107
Msa1053240 AT1G77530.1 27.326 344 216 10 29 346 43 378 1.60e-23 100
Msa1053240 AT5G37170.2 33.149 181 109 6 156 330 41 215 1.39e-22 95.1
Msa1053240 AT5G37170.1 33.149 181 109 6 156 330 141 315 3.25e-22 96.3
Msa1053240 AT1G21130.1 26.748 329 201 12 29 330 39 354 3.85e-21 93.6
Msa1053240 AT5G37170.3 33.333 171 103 6 166 330 2 167 2.25e-20 87.8
Msa1053240 AT1G21100.1 27.052 329 200 12 29 330 39 354 6.17e-20 90.1
Msa1053240 AT1G76790.1 27.273 330 200 12 29 330 29 346 2.89e-19 88.2
Msa1053240 AT1G21110.1 25.610 328 206 11 29 330 39 354 5.01e-19 87.4
Msa1053240 AT1G21120.1 25.305 328 210 10 29 333 39 354 5.00e-18 84.7
Msa1053240 AT1G21120.2 25.305 328 210 10 29 333 87 402 7.33e-18 84.7
Msa1053240 AT1G33030.2 27.039 233 158 5 29 249 20 252 2.19e-17 81.3
Msa1053240 AT1G33030.3 27.039 233 158 5 29 249 20 252 4.13e-17 80.9
Msa1053240 AT1G63140.1 26.718 262 157 9 13 249 51 302 7.23e-11 62.8

Find 57 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATTTCATGCAACAAAATT+TGG 0.164531 7_2:-22639093 Msa1053240:CDS
TACAAAATATTTCCTATATT+TGG 0.180034 7_2:-22638055 Msa1053240:CDS
GAGTAATAGGTCCATGATTT+TGG 0.208369 7_2:+22639402 None:intergenic
TCACAGTGTCATGCGTTTAT+TGG 0.252473 7_2:-22639327 Msa1053240:CDS
ACAAGCTCAGGAAGAGTAAT+AGG 0.288931 7_2:+22639389 None:intergenic
CGATCTTCGAGACTACATTA+TGG 0.302106 7_2:-22639115 Msa1053240:CDS
GTTAATCCTTCTACCACATT+TGG 0.348422 7_2:+22638885 None:intergenic
TGATCATTGTTTATCTTCAA+TGG 0.359893 7_2:-22639213 Msa1053240:CDS
AATATTATCAATTGAGCAAA+TGG 0.394667 7_2:-22639157 Msa1053240:CDS
GATCTTCGAGACTACATTAT+GGG 0.408307 7_2:-22639114 Msa1053240:CDS
TTAACTTCTTTGGTTGATGT+TGG 0.411610 7_2:-22638981 Msa1053240:CDS
TTTATCTTCAATGGTTAAGA+TGG 0.412436 7_2:-22639204 Msa1053240:CDS
ATTGAGCAAATGGACATCTA+AGG 0.416764 7_2:-22639147 Msa1053240:CDS
ACTTCTTTGGTTGATGTTGG+AGG 0.420904 7_2:-22638978 Msa1053240:CDS
GACCTTCCAAATGTGGTAGA+AGG 0.429597 7_2:-22638891 Msa1053240:CDS
ATTGTAAAGAAGCTGCTTCA+AGG 0.431595 7_2:-22638255 Msa1053240:CDS
AGTGACCTAAAACCAAATAT+AGG 0.433185 7_2:+22638043 None:intergenic
TACTCTTCCTGAGCTTGTCT+CGG 0.435364 7_2:-22639384 Msa1053240:CDS
AACACGGTTAAAATTATTTG+TGG 0.444508 7_2:-22638945 Msa1053240:CDS
CATGACACTGTGAACACAAC+CGG 0.451299 7_2:+22639337 None:intergenic
ACACGGTTAAAATTATTTGT+GGG 0.458925 7_2:-22638944 Msa1053240:CDS
AAATGTGGTAGAAGGATTAA+CGG 0.461848 7_2:-22638883 Msa1053240:CDS
ATCAAGTGGGCTGTTGAACT+TGG 0.469328 7_2:-22639440 Msa1053240:CDS
AATGTGGTAGAAGGATTAAC+GGG 0.469980 7_2:-22638882 Msa1053240:CDS
GTTGATGTTGGAGGTGGAAC+CGG 0.470193 7_2:-22638969 Msa1053240:CDS
TAATATTTATCAACCATGGT+AGG 0.470597 7_2:+22639173 None:intergenic
AAGAAAATCATCACAGAAGC+AGG 0.475794 7_2:-22638088 Msa1053240:CDS
GTAAAATTGCATCAGCTTGA+GGG 0.481886 7_2:+22638814 None:intergenic
CATCAAAGCTTCTTGTGAAA+GGG 0.492312 7_2:-22639238 Msa1053240:CDS
AGTAAAATTGCATCAGCTTG+AGG 0.494453 7_2:+22638813 None:intergenic
TTCACAAGAAGCTTTGATGT+TGG 0.499286 7_2:+22639242 None:intergenic
CTGCTTTGACATAACTATGA+TGG 0.500595 7_2:-22638149 Msa1053240:CDS
AATCTTCGCAATTGTCAAGA+TGG 0.505388 7_2:-22639294 Msa1053240:CDS
ACATCAAAGCTTCTTGTGAA+AGG 0.510825 7_2:-22639239 Msa1053240:CDS
CGAAGAGCCGAGACAAGCTC+AGG 0.517956 7_2:+22639377 None:intergenic
CCAGATATAATCCAAAATCA+TGG 0.520914 7_2:-22639413 Msa1053240:CDS
AATATTTATCAACCATGGTA+GGG 0.522593 7_2:+22639174 None:intergenic
CACGGTTAAAATTATTTGTG+GGG 0.545910 7_2:-22638943 Msa1053240:CDS
TGAGACCCGCGTCGATCAAG+TGG 0.547754 7_2:-22639454 Msa1053240:CDS
CGAATTCCAGAAGCAAAAGC+CGG 0.553157 7_2:-22639356 Msa1053240:CDS
TCTTTGGTTGATGTTGGAGG+TGG 0.553343 7_2:-22638975 Msa1053240:CDS
ATCCTTCTACCACATTTGGA+AGG 0.561989 7_2:+22638889 None:intergenic
GCTGCTTCAAGGCAAAAGAA+AGG 0.569337 7_2:-22638244 Msa1053240:CDS
AATTGCATCAGCTTGAGGGA+TGG 0.574477 7_2:+22638818 None:intergenic
GCAACAAAATTTGGCTTACG+CGG 0.589789 7_2:-22639084 Msa1053240:CDS
GGAGTTATTCAATGATGCTA+TGG 0.590700 7_2:-22639063 Msa1053240:CDS
TTGATAATATTTATCAACCA+TGG 0.592376 7_2:+22639169 None:intergenic
AGTGTTCGACCTTCCAAATG+TGG 0.610487 7_2:-22638898 Msa1053240:CDS
TGTCAAGATGGACGACAACA+AGG 0.611834 7_2:-22639282 Msa1053240:CDS
GAGCAAATGGACATCTAAGG+AGG 0.636357 7_2:-22639144 Msa1053240:CDS
ACAGCCCACTTGATCGACGC+GGG 0.642324 7_2:+22639449 None:intergenic
TGGAGGTGGAACCGGAAACA+CGG 0.653524 7_2:-22638961 Msa1053240:CDS
GATGGTAACAAACCCTACCA+TGG 0.661901 7_2:-22639186 Msa1053240:CDS
GCTTCAAGGCAAAAGAAAGG+AGG 0.668306 7_2:-22638241 Msa1053240:CDS
GAGACCCGCGTCGATCAAGT+GGG 0.673235 7_2:-22639453 Msa1053240:CDS
AGAGTGACTCTAATATGATG+AGG 0.684665 7_2:-22639040 Msa1053240:CDS
AACAGCCCACTTGATCGACG+CGG 0.727407 7_2:+22639448 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTTTTTTTTTTTTTGA+AGG - chr7_2:22639089-22639108 Msa1053240:CDS 10.0%
!!! GTTTTTTTTTTTTTTTTTGA+AGG - chr7_2:22639089-22639108 Msa1053240:CDS 10.0%
!! AAAAAAAACATAGATAAGAA+GGG - chr7_2:22639003-22639022 Msa1053240:CDS 15.0%
!! TACAAAATATTTCCTATATT+TGG - chr7_2:22639502-22639521 Msa1053240:CDS 15.0%
!! AAAAAAAACATAGATAAGAA+GGG - chr7_2:22639003-22639022 Msa1053240:CDS 15.0%
!! TACAAAATATTTCCTATATT+TGG - chr7_2:22639502-22639521 Msa1053240:CDS 15.0%
!!! TTGATAATATTTATCAACCA+TGG + chr7_2:22638391-22638410 None:intergenic 20.0%
!! AATATTATCAATTGAGCAAA+TGG - chr7_2:22638400-22638419 Msa1053240:intron 20.0%
!!! AATAACTATCTAAGTTTTGT+CGG - chr7_2:22638699-22638718 Msa1053240:intron 20.0%
!! AAGTAAAACATAGATAAGAA+GGG - chr7_2:22638852-22638871 Msa1053240:CDS 20.0%
!! GAAAAAAAACATAGATAAGA+AGG - chr7_2:22639002-22639021 Msa1053240:CDS 20.0%
!! AAAAAACTATGATACTATCT+TGG + chr7_2:22639076-22639095 None:intergenic 20.0%
!!! TAACAATACTTTGTTATGTA+TGG + chr7_2:22639188-22639207 None:intergenic 20.0%
!! CTAAGCTAATTAATAATGTA+TGG + chr7_2:22639213-22639232 None:intergenic 20.0%
!!! TATTTCCTATATTTGGTTTT+AGG - chr7_2:22639509-22639528 Msa1053240:CDS 20.0%
!!! TTGATAATATTTATCAACCA+TGG + chr7_2:22638391-22638410 None:intergenic 20.0%
!! AATATTATCAATTGAGCAAA+TGG - chr7_2:22638400-22638419 Msa1053240:intron 20.0%
!!! AATAACTATCTAAGTTTTGT+CGG - chr7_2:22638699-22638718 Msa1053240:intron 20.0%
!! AAGTAAAACATAGATAAGAA+GGG - chr7_2:22638852-22638871 Msa1053240:CDS 20.0%
!! GAAAAAAAACATAGATAAGA+AGG - chr7_2:22639002-22639021 Msa1053240:CDS 20.0%
!! AAAAAACTATGATACTATCT+TGG + chr7_2:22639076-22639095 None:intergenic 20.0%
!!! TAACAATACTTTGTTATGTA+TGG + chr7_2:22639188-22639207 None:intergenic 20.0%
!! CTAAGCTAATTAATAATGTA+TGG + chr7_2:22639213-22639232 None:intergenic 20.0%
!!! TATTTCCTATATTTGGTTTT+AGG - chr7_2:22639509-22639528 Msa1053240:CDS 20.0%
! TGATCATTGTTTATCTTCAA+TGG - chr7_2:22638344-22638363 Msa1053240:intron 25.0%
! TTTATCTTCAATGGTTAAGA+TGG - chr7_2:22638353-22638372 Msa1053240:intron 25.0%
! AATATTTATCAACCATGGTA+GGG + chr7_2:22638386-22638405 None:intergenic 25.0%
! TAATATTTATCAACCATGGT+AGG + chr7_2:22638387-22638406 None:intergenic 25.0%
!!! AATAATTTTAACCGTGTTTC+CGG + chr7_2:22638610-22638629 None:intergenic 25.0%
! AACACGGTTAAAATTATTTG+TGG - chr7_2:22638612-22638631 Msa1053240:intron 25.0%
! ACACGGTTAAAATTATTTGT+GGG - chr7_2:22638613-22638632 Msa1053240:intron 25.0%
!!! AACACTATACATTTTAACGT+AGG + chr7_2:22638645-22638664 None:intergenic 25.0%
! AAGGTACGTATTAATTCAAA+GGG - chr7_2:22638768-22638787 Msa1053240:intron 25.0%
! TTAATTCAAAGGGAAATGAA+TGG - chr7_2:22638778-22638797 Msa1053240:intron 25.0%
!! TCTTATCTATGTTTTACTTC+AGG + chr7_2:22638851-22638870 None:intergenic 25.0%
! GAAGTAAAACATAGATAAGA+AGG - chr7_2:22638851-22638870 Msa1053240:CDS 25.0%
!!! AGAAATTCACCTTTTTAAGA+TGG + chr7_2:22638954-22638973 None:intergenic 25.0%
!!! TTTCTTTTTAAGTAGCCTAA+CGG + chr7_2:22638979-22638998 None:intergenic 25.0%
!!! TTTCCTTTTCATTTTTGTAG+TGG - chr7_2:22639233-22639252 Msa1053240:CDS 25.0%
!!! TTCCTTTTCATTTTTGTAGT+GGG - chr7_2:22639234-22639253 Msa1053240:CDS 25.0%
! TGATCATTGTTTATCTTCAA+TGG - chr7_2:22638344-22638363 Msa1053240:intron 25.0%
! TTTATCTTCAATGGTTAAGA+TGG - chr7_2:22638353-22638372 Msa1053240:intron 25.0%
! AATATTTATCAACCATGGTA+GGG + chr7_2:22638386-22638405 None:intergenic 25.0%
! TAATATTTATCAACCATGGT+AGG + chr7_2:22638387-22638406 None:intergenic 25.0%
!!! AATAATTTTAACCGTGTTTC+CGG + chr7_2:22638610-22638629 None:intergenic 25.0%
! AACACGGTTAAAATTATTTG+TGG - chr7_2:22638612-22638631 Msa1053240:intron 25.0%
! ACACGGTTAAAATTATTTGT+GGG - chr7_2:22638613-22638632 Msa1053240:intron 25.0%
!!! AACACTATACATTTTAACGT+AGG + chr7_2:22638645-22638664 None:intergenic 25.0%
! AAGGTACGTATTAATTCAAA+GGG - chr7_2:22638768-22638787 Msa1053240:intron 25.0%
! TTAATTCAAAGGGAAATGAA+TGG - chr7_2:22638778-22638797 Msa1053240:intron 25.0%
!! TCTTATCTATGTTTTACTTC+AGG + chr7_2:22638851-22638870 None:intergenic 25.0%
! GAAGTAAAACATAGATAAGA+AGG - chr7_2:22638851-22638870 Msa1053240:CDS 25.0%
!!! AGAAATTCACCTTTTTAAGA+TGG + chr7_2:22638954-22638973 None:intergenic 25.0%
!!! TTTCTTTTTAAGTAGCCTAA+CGG + chr7_2:22638979-22638998 None:intergenic 25.0%
!!! TTTCCTTTTCATTTTTGTAG+TGG - chr7_2:22639233-22639252 Msa1053240:CDS 25.0%
!!! TTCCTTTTCATTTTTGTAGT+GGG - chr7_2:22639234-22639253 Msa1053240:CDS 25.0%
! CCATGATTTTGGATTATATC+TGG + chr7_2:22638147-22638166 None:intergenic 30.0%
CCAGATATAATCCAAAATCA+TGG - chr7_2:22638144-22638163 Msa1053240:CDS 30.0%
GGATTTCATGCAACAAAATT+TGG - chr7_2:22638464-22638483 Msa1053240:intron 30.0%
! TGATTGCAAAACAGTTTTTG+AGG - chr7_2:22638551-22638570 Msa1053240:intron 30.0%
! GATTGCAAAACAGTTTTTGA+GGG - chr7_2:22638552-22638571 Msa1053240:intron 30.0%
! TTAACTTCTTTGGTTGATGT+TGG - chr7_2:22638576-22638595 Msa1053240:intron 30.0%
CACGGTTAAAATTATTTGTG+GGG - chr7_2:22638614-22638633 Msa1053240:intron 30.0%
AAATGTGGTAGAAGGATTAA+CGG - chr7_2:22638674-22638693 Msa1053240:intron 30.0%
CAAGGTACGTATTAATTCAA+AGG - chr7_2:22638767-22638786 Msa1053240:intron 30.0%
ATAGATTCGCAATTAGGTAA+AGG + chr7_2:22638815-22638834 None:intergenic 30.0%
CTAATTGCGAATCTATATGT+CGG - chr7_2:22638819-22638838 Msa1053240:CDS 30.0%
TTGTTCCTAAGTTAAGTTCA+CGG + chr7_2:22638881-22638900 None:intergenic 30.0%
TGCATTATATATGCAGATGT+CGG - chr7_2:22638901-22638920 Msa1053240:CDS 30.0%
!!! CTTTTTAAGATGGATATGTG+GGG + chr7_2:22638944-22638963 None:intergenic 30.0%
!!! CCTTTTTAAGATGGATATGT+GGG + chr7_2:22638945-22638964 None:intergenic 30.0%
!!! ACCTTTTTAAGATGGATATG+TGG + chr7_2:22638946-22638965 None:intergenic 30.0%
AACCCACTACAAAAATGAAA+AGG + chr7_2:22639239-22639258 None:intergenic 30.0%
AGTGACCTAAAACCAAATAT+AGG + chr7_2:22639517-22639536 None:intergenic 30.0%
! CCATGATTTTGGATTATATC+TGG + chr7_2:22638147-22638166 None:intergenic 30.0%
CCAGATATAATCCAAAATCA+TGG - chr7_2:22638144-22638163 Msa1053240:CDS 30.0%
GGATTTCATGCAACAAAATT+TGG - chr7_2:22638464-22638483 Msa1053240:intron 30.0%
! TGATTGCAAAACAGTTTTTG+AGG - chr7_2:22638551-22638570 Msa1053240:intron 30.0%
! GATTGCAAAACAGTTTTTGA+GGG - chr7_2:22638552-22638571 Msa1053240:intron 30.0%
! TTAACTTCTTTGGTTGATGT+TGG - chr7_2:22638576-22638595 Msa1053240:intron 30.0%
CACGGTTAAAATTATTTGTG+GGG - chr7_2:22638614-22638633 Msa1053240:intron 30.0%
AAATGTGGTAGAAGGATTAA+CGG - chr7_2:22638674-22638693 Msa1053240:intron 30.0%
CAAGGTACGTATTAATTCAA+AGG - chr7_2:22638767-22638786 Msa1053240:intron 30.0%
ATAGATTCGCAATTAGGTAA+AGG + chr7_2:22638815-22638834 None:intergenic 30.0%
CTAATTGCGAATCTATATGT+CGG - chr7_2:22638819-22638838 Msa1053240:CDS 30.0%
TTGTTCCTAAGTTAAGTTCA+CGG + chr7_2:22638881-22638900 None:intergenic 30.0%
TGCATTATATATGCAGATGT+CGG - chr7_2:22638901-22638920 Msa1053240:CDS 30.0%
!!! CTTTTTAAGATGGATATGTG+GGG + chr7_2:22638944-22638963 None:intergenic 30.0%
!!! CCTTTTTAAGATGGATATGT+GGG + chr7_2:22638945-22638964 None:intergenic 30.0%
!!! ACCTTTTTAAGATGGATATG+TGG + chr7_2:22638946-22638965 None:intergenic 30.0%
AACCCACTACAAAAATGAAA+AGG + chr7_2:22639239-22639258 None:intergenic 30.0%
AGTGACCTAAAACCAAATAT+AGG + chr7_2:22639517-22639536 None:intergenic 30.0%
! GAGTAATAGGTCCATGATTT+TGG + chr7_2:22638158-22638177 None:intergenic 35.0%
AATCTTCGCAATTGTCAAGA+TGG - chr7_2:22638263-22638282 Msa1053240:CDS 35.0%
! TTCACAAGAAGCTTTGATGT+TGG + chr7_2:22638318-22638337 None:intergenic 35.0%
ACATCAAAGCTTCTTGTGAA+AGG - chr7_2:22638318-22638337 Msa1053240:intron 35.0%
CATCAAAGCTTCTTGTGAAA+GGG - chr7_2:22638319-22638338 Msa1053240:intron 35.0%
ATTGAGCAAATGGACATCTA+AGG - chr7_2:22638410-22638429 Msa1053240:intron 35.0%
GATCTTCGAGACTACATTAT+GGG - chr7_2:22638443-22638462 Msa1053240:intron 35.0%
GGAGTTATTCAATGATGCTA+TGG - chr7_2:22638494-22638513 Msa1053240:intron 35.0%
AGAGTGACTCTAATATGATG+AGG - chr7_2:22638517-22638536 Msa1053240:intron 35.0%
!! TTTTGAGGGCTTAACTTCTT+TGG - chr7_2:22638566-22638585 Msa1053240:intron 35.0%
GTTAATCCTTCTACCACATT+TGG + chr7_2:22638675-22638694 None:intergenic 35.0%
AATGTGGTAGAAGGATTAAC+GGG - chr7_2:22638675-22638694 Msa1053240:intron 35.0%
!! AACTATCTAAGTTTTGTCGG+CGG - chr7_2:22638702-22638721 Msa1053240:intron 35.0%
GTAAAATTGCATCAGCTTGA+GGG + chr7_2:22638746-22638765 None:intergenic 35.0%
AGTAAAATTGCATCAGCTTG+AGG + chr7_2:22638747-22638766 None:intergenic 35.0%
! AGCTGATGCAATTTTACTCA+AGG - chr7_2:22638749-22638768 Msa1053240:intron 35.0%
CGACATATAGATTCGCAATT+AGG + chr7_2:22638821-22638840 None:intergenic 35.0%
TGTTCCTAAGTTAAGTTCAC+GGG + chr7_2:22638880-22638899 None:intergenic 35.0%
CCCACATATCCATCTTAAAA+AGG - chr7_2:22638942-22638961 Msa1053240:CDS 35.0%
ATTGTAAAGAAGCTGCTTCA+AGG - chr7_2:22639302-22639321 Msa1053240:CDS 35.0%
CTGCTTTGACATAACTATGA+TGG - chr7_2:22639408-22639427 Msa1053240:CDS 35.0%
GAGAGAGAGATGAAAAAACA+TGG - chr7_2:22639446-22639465 Msa1053240:CDS 35.0%
AAGAAAATCATCACAGAAGC+AGG - chr7_2:22639469-22639488 Msa1053240:CDS 35.0%
! GAGTAATAGGTCCATGATTT+TGG + chr7_2:22638158-22638177 None:intergenic 35.0%
AATCTTCGCAATTGTCAAGA+TGG - chr7_2:22638263-22638282 Msa1053240:CDS 35.0%
! TTCACAAGAAGCTTTGATGT+TGG + chr7_2:22638318-22638337 None:intergenic 35.0%
ACATCAAAGCTTCTTGTGAA+AGG - chr7_2:22638318-22638337 Msa1053240:intron 35.0%
CATCAAAGCTTCTTGTGAAA+GGG - chr7_2:22638319-22638338 Msa1053240:intron 35.0%
ATTGAGCAAATGGACATCTA+AGG - chr7_2:22638410-22638429 Msa1053240:intron 35.0%
GATCTTCGAGACTACATTAT+GGG - chr7_2:22638443-22638462 Msa1053240:intron 35.0%
GGAGTTATTCAATGATGCTA+TGG - chr7_2:22638494-22638513 Msa1053240:intron 35.0%
AGAGTGACTCTAATATGATG+AGG - chr7_2:22638517-22638536 Msa1053240:intron 35.0%
!! TTTTGAGGGCTTAACTTCTT+TGG - chr7_2:22638566-22638585 Msa1053240:intron 35.0%
GTTAATCCTTCTACCACATT+TGG + chr7_2:22638675-22638694 None:intergenic 35.0%
AATGTGGTAGAAGGATTAAC+GGG - chr7_2:22638675-22638694 Msa1053240:intron 35.0%
!! AACTATCTAAGTTTTGTCGG+CGG - chr7_2:22638702-22638721 Msa1053240:intron 35.0%
GTAAAATTGCATCAGCTTGA+GGG + chr7_2:22638746-22638765 None:intergenic 35.0%
AGTAAAATTGCATCAGCTTG+AGG + chr7_2:22638747-22638766 None:intergenic 35.0%
! AGCTGATGCAATTTTACTCA+AGG - chr7_2:22638749-22638768 Msa1053240:intron 35.0%
CGACATATAGATTCGCAATT+AGG + chr7_2:22638821-22638840 None:intergenic 35.0%
TGTTCCTAAGTTAAGTTCAC+GGG + chr7_2:22638880-22638899 None:intergenic 35.0%
CCCACATATCCATCTTAAAA+AGG - chr7_2:22638942-22638961 Msa1053240:CDS 35.0%
ATTGTAAAGAAGCTGCTTCA+AGG - chr7_2:22639302-22639321 Msa1053240:CDS 35.0%
CTGCTTTGACATAACTATGA+TGG - chr7_2:22639408-22639427 Msa1053240:CDS 35.0%
GAGAGAGAGATGAAAAAACA+TGG - chr7_2:22639446-22639465 Msa1053240:CDS 35.0%
AAGAAAATCATCACAGAAGC+AGG - chr7_2:22639469-22639488 Msa1053240:CDS 35.0%
ACAAGCTCAGGAAGAGTAAT+AGG + chr7_2:22638171-22638190 None:intergenic 40.0%
TCACAGTGTCATGCGTTTAT+TGG - chr7_2:22638230-22638249 Msa1053240:CDS 40.0%
CGATCTTCGAGACTACATTA+TGG - chr7_2:22638442-22638461 Msa1053240:intron 40.0%
! GCAACAAAATTTGGCTTACG+CGG - chr7_2:22638473-22638492 Msa1053240:intron 40.0%
! ACTTCTTTGGTTGATGTTGG+AGG - chr7_2:22638579-22638598 Msa1053240:intron 40.0%
ATCCTTCTACCACATTTGGA+AGG + chr7_2:22638671-22638690 None:intergenic 40.0%
!! AAGGTGAATTTCTAGCCGTT+AGG - chr7_2:22638961-22638980 Msa1053240:CDS 40.0%
!!! TGTAGTGGGTTTTGCATAAC+TGG - chr7_2:22639248-22639267 Msa1053240:CDS 40.0%
ACAAGCTCAGGAAGAGTAAT+AGG + chr7_2:22638171-22638190 None:intergenic 40.0%
TCACAGTGTCATGCGTTTAT+TGG - chr7_2:22638230-22638249 Msa1053240:CDS 40.0%
CGATCTTCGAGACTACATTA+TGG - chr7_2:22638442-22638461 Msa1053240:intron 40.0%
! GCAACAAAATTTGGCTTACG+CGG - chr7_2:22638473-22638492 Msa1053240:intron 40.0%
! ACTTCTTTGGTTGATGTTGG+AGG - chr7_2:22638579-22638598 Msa1053240:intron 40.0%
ATCCTTCTACCACATTTGGA+AGG + chr7_2:22638671-22638690 None:intergenic 40.0%
!! AAGGTGAATTTCTAGCCGTT+AGG - chr7_2:22638961-22638980 Msa1053240:CDS 40.0%
!!! TGTAGTGGGTTTTGCATAAC+TGG - chr7_2:22639248-22639267 Msa1053240:CDS 40.0%
!! ATCAAGTGGGCTGTTGAACT+TGG - chr7_2:22638117-22638136 Msa1053240:CDS 45.0%
TACTCTTCCTGAGCTTGTCT+CGG - chr7_2:22638173-22638192 Msa1053240:CDS 45.0%
CGAATTCCAGAAGCAAAAGC+CGG - chr7_2:22638201-22638220 Msa1053240:CDS 45.0%
CATGACACTGTGAACACAAC+CGG + chr7_2:22638223-22638242 None:intergenic 45.0%
TGTCAAGATGGACGACAACA+AGG - chr7_2:22638275-22638294 Msa1053240:CDS 45.0%
GATGGTAACAAACCCTACCA+TGG - chr7_2:22638371-22638390 Msa1053240:intron 45.0%
GAGCAAATGGACATCTAAGG+AGG - chr7_2:22638413-22638432 Msa1053240:intron 45.0%
! TCTTTGGTTGATGTTGGAGG+TGG - chr7_2:22638582-22638601 Msa1053240:intron 45.0%
AGTGTTCGACCTTCCAAATG+TGG - chr7_2:22638659-22638678 Msa1053240:intron 45.0%
GACCTTCCAAATGTGGTAGA+AGG - chr7_2:22638666-22638685 Msa1053240:intron 45.0%
AATTGCATCAGCTTGAGGGA+TGG + chr7_2:22638742-22638761 None:intergenic 45.0%
GGTACCCGTGAACTTAACTT+AGG - chr7_2:22638873-22638892 Msa1053240:CDS 45.0%
GCTGCTTCAAGGCAAAAGAA+AGG - chr7_2:22639313-22639332 Msa1053240:CDS 45.0%
GCTTCAAGGCAAAAGAAAGG+AGG - chr7_2:22639316-22639335 Msa1053240:CDS 45.0%
!! ATCAAGTGGGCTGTTGAACT+TGG - chr7_2:22638117-22638136 Msa1053240:CDS 45.0%
TACTCTTCCTGAGCTTGTCT+CGG - chr7_2:22638173-22638192 Msa1053240:CDS 45.0%
CGAATTCCAGAAGCAAAAGC+CGG - chr7_2:22638201-22638220 Msa1053240:CDS 45.0%
CATGACACTGTGAACACAAC+CGG + chr7_2:22638223-22638242 None:intergenic 45.0%
TGTCAAGATGGACGACAACA+AGG - chr7_2:22638275-22638294 Msa1053240:CDS 45.0%
GATGGTAACAAACCCTACCA+TGG - chr7_2:22638371-22638390 Msa1053240:intron 45.0%
GAGCAAATGGACATCTAAGG+AGG - chr7_2:22638413-22638432 Msa1053240:intron 45.0%
! TCTTTGGTTGATGTTGGAGG+TGG - chr7_2:22638582-22638601 Msa1053240:intron 45.0%
AGTGTTCGACCTTCCAAATG+TGG - chr7_2:22638659-22638678 Msa1053240:intron 45.0%
GACCTTCCAAATGTGGTAGA+AGG - chr7_2:22638666-22638685 Msa1053240:intron 45.0%
AATTGCATCAGCTTGAGGGA+TGG + chr7_2:22638742-22638761 None:intergenic 45.0%
GGTACCCGTGAACTTAACTT+AGG - chr7_2:22638873-22638892 Msa1053240:CDS 45.0%
GCTGCTTCAAGGCAAAAGAA+AGG - chr7_2:22639313-22639332 Msa1053240:CDS 45.0%
GCTTCAAGGCAAAAGAAAGG+AGG - chr7_2:22639316-22639335 Msa1053240:CDS 45.0%
!!! TTTTTTTTTTTTTTTTTGAA+GGG - chr7_2:22639090-22639109 Msa1053240:CDS 5.0%
!!! TTTTTTTTTTTTTTTTTGAA+GGG - chr7_2:22639090-22639109 Msa1053240:CDS 5.0%
!! ACACAACCGGCTTTTGCTTC+TGG + chr7_2:22638210-22638229 None:intergenic 50.0%
GTTGATGTTGGAGGTGGAAC+CGG - chr7_2:22638588-22638607 Msa1053240:intron 50.0%
AGATGTCGGAGTTTGAACCC+CGG - chr7_2:22638915-22638934 Msa1053240:CDS 50.0%
AGATGGATATGTGGGGTGAC+CGG + chr7_2:22638937-22638956 None:intergenic 50.0%
!! ACACAACCGGCTTTTGCTTC+TGG + chr7_2:22638210-22638229 None:intergenic 50.0%
GTTGATGTTGGAGGTGGAAC+CGG - chr7_2:22638588-22638607 Msa1053240:intron 50.0%
AGATGTCGGAGTTTGAACCC+CGG - chr7_2:22638915-22638934 Msa1053240:CDS 50.0%
AGATGGATATGTGGGGTGAC+CGG + chr7_2:22638937-22638956 None:intergenic 50.0%
AACAGCCCACTTGATCGACG+CGG + chr7_2:22638112-22638131 None:intergenic 55.0%
TGGAGGTGGAACCGGAAACA+CGG - chr7_2:22638596-22638615 Msa1053240:intron 55.0%
ATGGATATGTGGGGTGACCG+GGG + chr7_2:22638935-22638954 None:intergenic 55.0%
GATGGATATGTGGGGTGACC+GGG + chr7_2:22638936-22638955 None:intergenic 55.0%
AACAGCCCACTTGATCGACG+CGG + chr7_2:22638112-22638131 None:intergenic 55.0%
TGGAGGTGGAACCGGAAACA+CGG - chr7_2:22638596-22638615 Msa1053240:intron 55.0%
ATGGATATGTGGGGTGACCG+GGG + chr7_2:22638935-22638954 None:intergenic 55.0%
GATGGATATGTGGGGTGACC+GGG + chr7_2:22638936-22638955 None:intergenic 55.0%
! TGAGACCCGCGTCGATCAAG+TGG - chr7_2:22638103-22638122 Msa1053240:CDS 60.0%
! GAGACCCGCGTCGATCAAGT+GGG - chr7_2:22638104-22638123 Msa1053240:CDS 60.0%
ACAGCCCACTTGATCGACGC+GGG + chr7_2:22638111-22638130 None:intergenic 60.0%
CGAAGAGCCGAGACAAGCTC+AGG + chr7_2:22638183-22638202 None:intergenic 60.0%
! TGAGACCCGCGTCGATCAAG+TGG - chr7_2:22638103-22638122 Msa1053240:CDS 60.0%
! GAGACCCGCGTCGATCAAGT+GGG - chr7_2:22638104-22638123 Msa1053240:CDS 60.0%
ACAGCCCACTTGATCGACGC+GGG + chr7_2:22638111-22638130 None:intergenic 60.0%
CGAAGAGCCGAGACAAGCTC+AGG + chr7_2:22638183-22638202 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 22638024 22639555 22638024 ID=Msa1053240;Name=Msa1053240
chr7_2 mRNA 22638024 22639555 22638024 ID=Msa1053240-mRNA-1;Parent=Msa1053240;Name=Msa1053240-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|349
chr7_2 exon 22638809 22639555 22638809 ID=Msa1053240-mRNA-1:exon:5116;Parent=Msa1053240-mRNA-1
chr7_2 exon 22638024 22638326 22638024 ID=Msa1053240-mRNA-1:exon:5115;Parent=Msa1053240-mRNA-1
chr7_2 CDS 22638809 22639555 22638809 ID=Msa1053240-mRNA-1:cds;Parent=Msa1053240-mRNA-1
chr7_2 CDS 22638024 22638326 22638024 ID=Msa1053240-mRNA-1:cds;Parent=Msa1053240-mRNA-1
Gene Sequence

>Msa1053240

ATGGGTTCTGAGAATGAGTGCAAAGCAAGTGAGCTCTTTGAAGCTCAAGCTTACTTGTACAATCAGTTATTCAGTTTCATGAGACCCGCGTCGATCAAGTGGGCTGTTGAACTTGGCATACCAGATATAATCCAAAATCATGGACCTATTACTCTTCCTGAGCTTGTCTCGGCTCTTCGAATTCCAGAAGCAAAAGCCGGTTGTGTTCACAGTGTCATGCGTTTATTGGCGCACAATAAAATCTTCGCAATTGTCAAGATGGACGACAACAAGGAAGCATATGCTCTTTCTCCAACATCAAAGCTTCTTGTGAAAGGGACTGATCATTGTTTATCTTCAATGGTTAAGATGGTAACAAACCCTACCATGGTTGATAAATATTATCAATTGAGCAAATGGACATCTAAGGAGGATCTCACGATCTTCGAGACTACATTATGGGATTTCATGCAACAAAATTTGGCTTACGCGGAGTTATTCAATGATGCTATGGAGAGTGACTCTAATATGATGAGGTTTGCAATGAGTGATTGCAAAACAGTTTTTGAGGGCTTAACTTCTTTGGTTGATGTTGGAGGTGGAACCGGAAACACGGTTAAAATTATTTGTGGGGCGTTTCCTACGTTAAAATGTATAGTGTTCGACCTTCCAAATGTGGTAGAAGGATTAACGGGAAATAACTATCTAAGTTTTGTCGGCGGAGATATGTTTGAATCCATCCCTCAAGCTGATGCAATTTTACTCAAGTGGGTTTTGCATAACTGGAATGATGATGAATGTGTAAAGATACTTAAAAATTGTAAAGAAGCTGCTTCAAGGCAAAAGAAAGGAGGAAAAGTGATCATAATAGACATTGTGATAAATGAAAAGCAAGATGAGCATGAAATAACAGAAGTCAAACTCTGCTTTGACATAACTATGATGGCTAATCACAATTCAAGAGAGAGAGATGAAAAAACATGGAAGAAAATCATCACAGAAGCAGGATTCATGTGTTACAAAATATTTCCTATATTTGGTTTTAGGTCACTTATTGAAATTTCTGTTTAA

Protein sequence

>Msa1053240

MGSENECKASELFEAQAYLYNQLFSFMRPASIKWAVELGIPDIIQNHGPITLPELVSALRIPEAKAGCVHSVMRLLAHNKIFAIVKMDDNKEAYALSPTSKLLVKGTDHCLSSMVKMVTNPTMVDKYYQLSKWTSKEDLTIFETTLWDFMQQNLAYAELFNDAMESDSNMMRFAMSDCKTVFEGLTSLVDVGGGTGNTVKIICGAFPTLKCIVFDLPNVVEGLTGNNYLSFVGGDMFESIPQADAILLKWVLHNWNDDECVKILKNCKEAASRQKKGGKVIIIDIVINEKQDEHEITEVKLCFDITMMANHNSRERDEKTWKKIITEAGFMCYKIFPIFGFRSLIEISV*