AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1053580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1053580 MtrunA17_Chr7g0223711 78.675 619 96 3 1 583 1 619 0.0 981
Msa1053580 MtrunA17_Chr8g0350731 78.155 618 100 2 1 583 29 646 0.0 971
Msa1053580 MtrunA17_Chr7g0223631 77.670 618 89 4 1 583 1 604 0.0 951
Msa1053580 MtrunA17_Chr7g0223751 74.434 618 123 2 1 583 1 618 0.0 936
Msa1053580 MtrunA17_Chr7g0223701 74.163 627 118 5 1 583 1 627 0.0 914
Msa1053580 MtrunA17_Chr7g0223621 72.876 612 131 2 1 577 1 612 0.0 895
Msa1053580 MtrunA17_Chr7g0223731 70.732 615 145 2 1 580 1 615 0.0 883
Msa1053580 MtrunA17_Chr7g0223031 69.821 613 150 2 1 578 1 613 0.0 878
Msa1053580 MtrunA17_Chr7g0223741 69.682 597 145 3 1 561 1 597 0.0 846
Msa1053580 MtrunA17_Chr7g0248131 68.860 623 154 6 1 583 1 623 0.0 843
Msa1053580 MtrunA17_Chr7g0248151 69.404 621 152 4 1 583 1 621 0.0 830
Msa1053580 MtrunA17_Chr7g0223681 79.764 509 94 2 76 583 29 529 0.0 804
Msa1053580 MtrunA17_Chr7g0223181 64.887 618 177 6 1 580 1 616 0.0 788
Msa1053580 MtrunA17_Chr7g0262821 63.929 621 184 6 1 583 1 619 0.0 778
Msa1053580 MtrunA17_Chr4g0031321 64.590 610 176 6 1 572 1 608 0.0 776
Msa1053580 MtrunA17_Chr4g0031301 64.426 610 177 6 1 572 1 608 0.0 774
Msa1053580 MtrunA17_Chr7g0223291 63.446 621 187 6 1 583 1 619 0.0 774
Msa1053580 MtrunA17_Chr7g0223541 69.597 546 130 3 74 583 31 576 0.0 773
Msa1053580 MtrunA17_Chr7g0221661 63.175 611 189 3 1 575 1 611 0.0 769
Msa1053580 MtrunA17_Chr7g0223781 62.969 613 191 3 1 578 1 612 0.0 760
Msa1053580 MtrunA17_Chr2g0293581 62.419 620 194 6 1 581 1 620 0.0 758
Msa1053580 MtrunA17_Chr7g0223801 61.513 608 200 2 1 574 1 608 0.0 757
Msa1053580 MtrunA17_Chr4g0073741 62.319 621 193 7 1 583 1 618 0.0 754
Msa1053580 MtrunA17_Chr2g0298851 61.588 617 198 6 1 579 1 616 0.0 751
Msa1053580 MtrunA17_Chr7g0233311 61.165 618 200 5 1 579 1 617 0.0 742
Msa1053580 MtrunA17_Chr5g0427901 60.383 626 201 4 1 579 1 626 0.0 742
Msa1053580 MtrunA17_Chr7g0223721 60.390 616 207 4 1 579 1 616 0.0 736
Msa1053580 MtrunA17_Chr7g0223851 60.518 618 207 4 1 581 10 627 0.0 734
Msa1053580 MtrunA17_Chr2g0298861 59.554 628 205 6 1 579 1 628 0.0 733
Msa1053580 MtrunA17_Chr7g0225671 60.390 616 204 6 3 581 12 624 0.0 724
Msa1053580 MtrunA17_Chr4g0040931 60.393 611 205 4 1 574 1 611 0.0 723
Msa1053580 MtrunA17_Chr2g0287631 61.588 617 199 5 1 579 1 617 0.0 719
Msa1053580 MtrunA17_Chr7g0223821 59.774 619 207 5 1 578 1 618 0.0 703
Msa1053580 MtrunA17_Chr7g0217971 59.528 593 181 3 1 558 1 569 0.0 703
Msa1053580 MtrunA17_Chr2g0296391 65.530 528 145 4 1 491 1 528 0.0 694
Msa1053580 MtrunA17_Chr7g0233301 56.796 618 196 6 1 579 1 586 0.0 671
Msa1053580 MtrunA17_Chr4g0012541 56.634 618 222 5 1 581 1 609 0.0 667
Msa1053580 MtrunA17_Chr8g0390821 54.111 669 203 10 1 580 1 654 0.0 659
Msa1053580 MtrunA17_Chr7g0223831 56.046 612 202 7 1 574 1 583 0.0 650
Msa1053580 MtrunA17_Chr6g0462601 55.574 619 232 5 1 580 1 615 0.0 645
Msa1053580 MtrunA17_Chr6g0462681 55.412 619 236 5 1 581 1 617 0.0 644
Msa1053580 MtrunA17_Chr2g0293601 62.934 518 121 5 1 481 1 484 0.0 637
Msa1053580 MtrunA17_Chr7g0215261 55.700 614 196 9 1 574 1 578 0.0 636
Msa1053580 MtrunA17_Chr7g0228281 54.854 618 197 7 1 581 62 634 0.0 636
Msa1053580 MtrunA17_Chr2g0331381 59.570 512 153 4 10 507 7 478 0.0 617
Msa1053580 MtrunA17_Chr6g0462711 53.971 617 241 5 8 582 9 624 0.0 612
Msa1053580 MtrunA17_Chr6g0462641 52.153 627 250 7 1 582 1 622 0.0 603
Msa1053580 MtrunA17_Chr6g0462771 52.836 617 247 5 8 582 8 622 0.0 598
Msa1053580 MtrunA17_Chr8g0388671 51.701 588 240 7 7 555 36 618 0.0 582
Msa1053580 MtrunA17_Chr8g0388761 51.531 588 241 7 7 555 36 618 0.0 582
Msa1053580 MtrunA17_Chr2g0284681 54.286 560 210 8 9 524 8 565 0.0 580
Msa1053580 MtrunA17_Chr1g0166551 52.091 574 195 6 9 579 5 501 0.0 557
Msa1053580 MtrunA17_Chr2g0293561 69.251 374 81 1 1 340 1 374 0.0 541
Msa1053580 MtrunA17_Chr6g0462611 52.757 544 221 3 74 581 22 565 0.0 537
Msa1053580 MtrunA17_Chr2g0299821 50.464 539 176 9 1 503 1 484 6.57e-169 489
Msa1053580 MtrunA17_Chr2g0299921 65.482 394 97 4 3 361 1023 1412 1.89e-163 509
Msa1053580 MtrunA17_Chr2g0299921 63.753 389 102 4 3 356 1407 1791 2.96e-148 468
Msa1053580 MtrunA17_Chr2g0299791 64.524 389 100 3 1 355 1034 1418 1.64e-161 497
Msa1053580 MtrunA17_Chr2g0299851 61.795 390 111 3 1 356 1030 1415 3.46e-157 486
Msa1053580 MtrunA17_Chr2g0293271 54.734 433 93 4 21 419 43 406 2.06e-151 441
Msa1053580 MtrunA17_Chr6g0462861 44.652 589 261 10 1 544 1 569 3.07e-151 449
Msa1053580 MtrunA17_Chr2g0279901 46.320 557 242 11 10 525 57 597 3.12e-150 447
Msa1053580 MtrunA17_Chr2g0299881 59.124 411 123 6 2 374 1031 1434 3.76e-148 463
Msa1053580 MtrunA17_Chr2g0299881 59.701 67 27 0 150 216 1409 1475 3.79e-18 89.0
Msa1053580 MtrunA17_Chr4g0049501 45.422 557 248 11 10 525 54 595 3.85e-146 437
Msa1053580 MtrunA17_Chr2g0277021 44.123 553 262 13 10 525 72 614 6.98e-136 412
Msa1053580 MtrunA17_Chr1g0151991 65.292 291 67 1 1 257 1 291 2.44e-132 388
Msa1053580 MtrunA17_Chr7g0245521 67.766 273 54 1 1 239 1 273 1.93e-131 385
Msa1053580 MtrunA17_Chr7g0245531 57.508 313 131 2 271 581 2 314 3.71e-117 350
Msa1053580 MtrunA17_Chr7g0223761 49.598 373 140 4 207 574 3 332 1.18e-111 337
Msa1053580 MtrunA17_Chr1g0152001 54.730 296 131 3 281 574 1 295 1.12e-101 310
Msa1053580 MtrunA17_Chr7g0223671 73.514 185 15 1 74 224 8 192 3.01e-89 274
Msa1053580 MtrunA17_Chr6g0462631 51.903 289 89 5 98 381 54 297 2.19e-84 265
Msa1053580 MtrunA17_Chr1g0188601 79.470 151 31 0 98 248 41 191 8.56e-82 254
Msa1053580 MtrunA17_Chr1g0188611 53.559 295 127 4 288 579 1 288 7.13e-81 256
Msa1053580 MtrunA17_Chr5g0394391 33.996 503 271 14 8 458 28 521 3.99e-76 252
Msa1053580 MtrunA17_Chr6g0462751 42.773 339 99 5 74 374 19 300 6.59e-74 238
Msa1053580 MtrunA17_Chr4g0046881 74.150 147 35 1 95 241 8 151 1.60e-71 226
Msa1053580 MtrunA17_Chr6g0462791 67.097 155 50 1 98 252 25 178 4.68e-66 213
Msa1053580 MtrunA17_Chr4g0004331 32.955 440 241 7 10 400 4 438 6.18e-64 225
Msa1053580 MtrunA17_Chr2g0331901 32.420 438 246 6 10 400 4 438 1.62e-63 224
Msa1053580 MtrunA17_Chr5g0444001 33.256 430 244 6 10 399 4 430 3.37e-63 217
Msa1053580 MtrunA17_Chr3g0098761 32.697 419 243 5 10 393 4 418 4.15e-62 219
Msa1053580 MtrunA17_Chr7g0223771 78.761 113 24 0 99 211 41 153 5.80e-58 191
Msa1053580 MtrunA17_Chr5g0394221 41.606 274 153 5 257 526 61 331 6.18e-55 189
Msa1053580 MtrunA17_Chr4g0064621 31.853 518 289 14 8 467 139 650 2.54e-54 196
Msa1053580 MtrunA17_Chr3g0120101 26.960 523 299 13 10 458 27 540 1.62e-50 187
Msa1053580 MtrunA17_Chr4g0060241 29.518 498 296 17 8 460 19 506 1.69e-48 177
Msa1053580 MtrunA17_Chr7g0245541 44.000 200 111 1 382 580 1 200 3.63e-46 161
Msa1053580 MtrunA17_Chr4g0046871 73.333 105 27 1 299 402 3 107 2.65e-45 155
Msa1053580 MtrunA17_Chr5g0442171 35.030 334 186 12 136 452 1 320 4.40e-45 162
Msa1053580 MtrunA17_Chr6g0462691 52.817 142 65 1 288 427 1 142 2.17e-42 149
Msa1053580 MtrunA17_Chr7g0223861 58.015 131 21 1 78 174 4 134 2.47e-41 145
Msa1053580 MtrunA17_Chr6g0462701 56.835 139 36 1 98 236 54 168 2.96e-41 147
Msa1053580 MtrunA17_Chr7g0223691 87.671 73 9 0 1 73 1 73 2.52e-40 140
Msa1053580 MtrunA17_Chr5g0394231 37.306 193 104 5 74 265 5 181 1.13e-35 132
Msa1053580 MtrunA17_Chr1g0188591 75.342 73 18 0 1 73 1 73 1.62e-31 117
Msa1053580 MtrunA17_Chr6g0481381 72.973 74 20 0 142 215 1 74 3.33e-31 119
Msa1053580 MtrunA17_Chr6g0462621 73.973 73 17 1 1 73 1 71 1.56e-29 111
Msa1053580 MtrunA17_Chr6g0481391 48.361 122 26 2 38 125 13 131 5.08e-27 106
Msa1053580 MtrunA17_Chr7g0221651 50.000 84 42 0 181 264 1 84 1.13e-21 89.7
Msa1053580 MtrunA17_Chr7g0223881 53.012 83 38 1 247 329 2 83 3.07e-21 88.2
Msa1053580 MtrunA17_Chr7g0223661 46.491 114 17 2 281 393 1 71 1.56e-19 83.6
Msa1053580 MtrunA17_Chr2g0284661 54.217 83 36 2 334 414 61 143 6.49e-17 77.8
Msa1053580 MtrunA17_Chr2g0284661 53.333 60 26 1 191 248 5 64 4.53e-12 63.9
Msa1053580 MtrunA17_Chr7g0223871 35.938 128 81 1 455 581 7 134 3.57e-16 75.9
Msa1053580 MtrunA17_Chr7g0223791 31.111 135 80 3 405 537 58 181 1.37e-15 75.1
Msa1053580 MtrunA17_Chr6g0462801 56.061 66 24 1 288 348 1 66 2.24e-15 71.2
Msa1053580 MtrunA17_Chr4g0064651 42.553 94 52 2 362 453 29 122 7.56e-15 71.2
Msa1053580 MtrunA17_Chr2g0299891 72.093 43 12 0 281 323 1 43 6.93e-14 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1053580 AT3G12580.1 64.734 621 179 6 1 583 1 619 0.0 786
Msa1053580 AT5G02500.1 62.945 618 189 6 1 580 1 616 0.0 772
Msa1053580 AT3G09440.1 63.592 618 185 6 1 580 1 616 0.0 768
Msa1053580 AT3G09440.4 63.592 618 185 6 1 580 1 616 0.0 768
Msa1053580 AT3G09440.2 63.592 618 185 6 1 580 1 616 0.0 768
Msa1053580 AT3G09440.3 63.592 618 185 6 1 580 1 616 0.0 768
Msa1053580 AT5G02490.1 62.298 618 193 6 1 580 1 616 0.0 763
Msa1053580 AT1G16030.1 61.675 621 197 7 1 583 1 618 0.0 749
Msa1053580 AT1G56410.1 61.192 621 199 7 1 583 1 617 0.0 744
Msa1053580 AT5G28540.1 51.736 605 248 7 7 572 35 634 0.0 597
Msa1053580 AT5G42020.1 51.405 605 250 7 7 572 35 634 0.0 595
Msa1053580 AT5G42020.3 51.405 605 250 7 7 572 40 639 0.0 594
Msa1053580 AT1G09080.2 50.163 612 262 7 7 580 40 646 0.0 568
Msa1053580 AT1G09080.1 50.163 612 262 7 7 580 50 656 0.0 568
Msa1053580 AT5G02500.2 69.666 389 82 2 1 355 1 387 0.0 560
Msa1053580 AT5G02500.2 43.011 93 53 0 480 572 386 478 4.69e-14 75.5
Msa1053580 AT5G42020.2 52.990 485 184 7 7 452 35 514 8.88e-168 491
Msa1053580 AT5G09590.1 45.372 551 253 10 10 523 60 599 7.21e-146 437
Msa1053580 AT4G37910.1 45.781 557 246 11 10 525 55 596 1.94e-142 428
Msa1053580 AT4G37910.2 45.781 557 246 11 10 525 55 596 1.94e-142 428
Msa1053580 AT4G24280.1 44.304 553 261 13 10 525 81 623 4.99e-136 413
Msa1053580 AT5G49910.1 43.400 553 266 11 10 525 81 623 2.55e-135 411
Msa1053580 AT1G11660.4 28.900 609 322 11 10 523 4 596 2.09e-72 247
Msa1053580 AT1G11660.3 28.900 609 322 11 10 523 4 596 2.09e-72 247
Msa1053580 AT1G11660.1 28.900 609 322 11 10 523 4 596 2.09e-72 247
Msa1053580 AT2G32120.1 32.359 513 281 14 8 471 29 524 2.19e-67 229
Msa1053580 AT2G32120.2 32.359 513 281 14 8 471 29 524 2.19e-67 229
Msa1053580 AT1G11660.2 29.371 572 295 10 47 523 2 559 1.79e-66 230
Msa1053580 AT1G79920.3 32.727 440 242 6 10 400 4 438 3.24e-64 224
Msa1053580 AT1G79920.2 32.727 440 242 6 10 400 4 438 3.24e-64 224
Msa1053580 AT1G79920.4 32.727 440 242 6 10 400 4 438 3.24e-64 224
Msa1053580 AT1G79920.1 32.727 440 242 6 10 400 4 438 3.34e-64 224
Msa1053580 AT1G79930.2 32.420 438 246 5 10 400 4 438 5.74e-64 224
Msa1053580 AT1G79930.1 32.420 438 246 5 10 400 4 438 1.09e-63 224
Msa1053580 AT4G16660.1 27.916 523 301 15 6 458 23 539 1.31e-51 190
Msa1053580 AT4G16660.2 27.916 523 301 15 6 458 47 563 1.43e-51 191

Find 123 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAACCTCCTCAAGGCTTT+TGG 0.126998 7_2:+24027011 None:intergenic
TTTGAATTGGCTTCAAAATT+TGG 0.143460 7_2:+24028263 None:intergenic
ATACATCATGGTATTGATTT+TGG 0.170319 7_2:-24026921 Msa1053580:CDS
AACCCAATCAACACTGTATT+TGG 0.172484 7_2:-24028006 Msa1053580:intron
TCCTTGTTGGTGGTTCTTCT+AGG 0.229614 7_2:-24026776 Msa1053580:CDS
TGTAGTGTATAGTAGTATTT+TGG 0.234038 7_2:+24028300 None:intergenic
AGTCGATGCAAGAAATAATT+TGG 0.249297 7_2:-24026187 Msa1053580:CDS
GCAGATGCAAAGAGGTTAAT+TGG 0.250254 7_2:-24027568 Msa1053580:intron
ATGTTATACCTTTGTCTTTA+GGG 0.265464 7_2:-24026602 Msa1053580:CDS
GATGTTATACCTTTGTCTTT+AGG 0.268063 7_2:-24026603 Msa1053580:CDS
TGTAATAGCTGCCTCACTTT+AGG 0.285625 7_2:+24026750 None:intergenic
GATCAATTCTGCAATGATAA+AGG 0.293473 7_2:-24026085 Msa1053580:CDS
CTTTGAAATTGTTAGCTTCC+TGG 0.309267 7_2:+24026235 None:intergenic
ATTACAATAACTAATGAAAA+TGG 0.320614 7_2:-24026291 Msa1053580:CDS
GAATAATGTAGGAGATATTA+TGG 0.321006 7_2:-24026577 Msa1053580:CDS
CGGCATCACCAATCAGCCTT+TGG 0.346998 7_2:+24028049 None:intergenic
CAAGTTTGAGCAATTGAATA+TGG 0.349400 7_2:-24026880 Msa1053580:CDS
GTGATCACTGCATTCTTAAC+AGG 0.372302 7_2:+24027374 None:intergenic
CTTACGCATGTGTTGGAGTA+TGG 0.376282 7_2:-24028155 Msa1053580:CDS
TGCATATGGTGCTGCTGTGC+AGG 0.381055 7_2:-24026673 Msa1053580:CDS
CTGCTTGTGAGAAGGCAAAA+AGG 0.381815 7_2:-24026986 Msa1053580:CDS
TTACCAAATACAGTGTTGAT+TGG 0.383287 7_2:+24028003 None:intergenic
CCATATGCAACAGCCTCATC+AGG 0.392319 7_2:+24026687 None:intergenic
TACACTATTCTTGTCCATCT+TGG 0.397263 7_2:+24026809 None:intergenic
GTAGATGATGTTGTCCTTGT+TGG 0.401743 7_2:-24026789 Msa1053580:CDS
ACATCTCGAAGTGTCAAGTT+TGG 0.401751 7_2:+24026621 None:intergenic
AAGAACAAAGAGGATATTAG+TGG 0.402789 7_2:-24027038 Msa1053580:CDS
ATAGCAAAGCATAGTTTGAT+AGG 0.403975 7_2:+24026375 None:intergenic
TTTGTAGAGAAGATTTGAAT+TGG 0.406011 7_2:+24028250 None:intergenic
AATATCACCTGCATCTTTAG+TGG 0.406579 7_2:+24027316 None:intergenic
TTGATCTTCACTTTGTCTAC+AGG 0.406918 7_2:+24026102 None:intergenic
TACCAAATACAGTGTTGATT+GGG 0.407934 7_2:+24028004 None:intergenic
ACTGCGGCGGCTCTTGCATA+TGG 0.414217 7_2:-24027257 Msa1053580:CDS
ACAAATTCCCAAAGGCTGAT+TGG 0.415818 7_2:-24028057 Msa1053580:CDS
ATCAATTCTGCAATGATAAA+GGG 0.417003 7_2:-24026084 Msa1053580:CDS
ATCTAGGTCAATTGTGGCTT+CGG 0.423568 7_2:+24026947 None:intergenic
GGCATCACCAATCAGCCTTT+GGG 0.424089 7_2:+24028050 None:intergenic
TCTACTGTTGTGGCCCTTCA+AGG 0.425171 7_2:-24027512 Msa1053580:intron
CTTCTTGATTTCACCTTACA+CGG 0.429015 7_2:+24030227 None:intergenic
AAAGATGCAGGTGATATTGC+TGG 0.430331 7_2:-24027311 Msa1053580:CDS
CATATTCAATTGCTCAAACT+TGG 0.433054 7_2:+24026881 None:intergenic
TTTGAAGTCAAGGCCACTGC+TGG 0.434747 7_2:-24027131 Msa1053580:CDS
TTGACAGTTCAGTCCGTGTA+AGG 0.440371 7_2:-24030240 Msa1053580:five_prime_UTR
GGAAGATGCATTTGTGTTTG+TGG 0.453953 7_2:-24026034 Msa1053580:CDS
TTATGGATGTTGTTATTCCT+AGG 0.462065 7_2:-24026560 Msa1053580:CDS
TTTATCTTTGACCTTGGCGG+TGG 0.462714 7_2:-24027194 Msa1053580:CDS
TCTTTAGGGAAGAATAATGT+AGG 0.463308 7_2:-24026588 Msa1053580:CDS
AGAGATTGAGAGAATGATCC+AGG 0.465369 7_2:-24026253 Msa1053580:CDS
GGTCCTCTTTGAAAAGTGTA+TGG 0.471350 7_2:-24026859 Msa1053580:CDS
TTTGTCTACAGGGGTGAGCT+TGG 0.474241 7_2:+24026113 None:intergenic
GCCAGTCAAAACAACTTGCT+TGG 0.474718 7_2:-24026438 Msa1053580:CDS
TTTGGTTGATGACAACCAAC+AGG 0.478343 7_2:-24026055 Msa1053580:CDS
CCTGATGAGGCTGTTGCATA+TGG 0.478680 7_2:-24026687 Msa1053580:CDS
AATATCATTCTTATTACCAC+TGG 0.490634 7_2:+24026311 None:intergenic
CGCATGTGTTGGAGTATGGC+TGG 0.491560 7_2:-24028151 Msa1053580:CDS
GAAATTATTCACAATGATCA+AGG 0.492859 7_2:-24028111 Msa1053580:CDS
GATGATGTTGTCCTTGTTGG+TGG 0.496358 7_2:-24026786 Msa1053580:CDS
CAATGTGAGGAAAGTAATGA+AGG 0.506391 7_2:-24026151 Msa1053580:CDS
TGTGAATCATTAAAATAAGC+AGG 0.511579 7_2:+24027347 None:intergenic
AGTATTATCTTTACAATGTG+AGG 0.520311 7_2:-24026164 Msa1053580:CDS
AAATAAGGTCTTTGAAGTCA+AGG 0.528245 7_2:-24027141 Msa1053580:CDS
GACCTAGATGTTATACATCA+TGG 0.534230 7_2:-24026933 Msa1053580:CDS
CAAAGCATAGTTTGATAGGA+AGG 0.546436 7_2:+24026379 None:intergenic
TGATCTTCACTTTGTCTACA+GGG 0.559552 7_2:+24026103 None:intergenic
GGCACGACTTACGCATGTGT+TGG 0.561561 7_2:-24028162 Msa1053580:CDS
AGCACCGGCAATGACCTTGA+AGG 0.562206 7_2:+24027498 None:intergenic
CGAAGAGCCACTAAAGATGC+AGG 0.564548 7_2:-24027323 Msa1053580:CDS
TATGCAAGAGCCGCCGCAGT+CGG 0.567463 7_2:+24027260 None:intergenic
TACCATGATGTATAACATCT+AGG 0.568858 7_2:+24026931 None:intergenic
ATGCAAAGAGGTTAATTGGA+AGG 0.571352 7_2:-24027564 Msa1053580:CDS
GTTGCGATCGGAATTGACCT+TGG 0.571381 7_2:-24028183 Msa1053580:CDS
CCTTAATCAAAACTGTGGGT+TGG 0.572088 7_2:+24026484 None:intergenic
TATAACATCTAGGTCAATTG+TGG 0.576693 7_2:+24026941 None:intergenic
GCACCGGCAATGACCTTGAA+GGG 0.578272 7_2:+24027499 None:intergenic
TAGTTTGATAGGAAGGCCGC+GGG 0.578393 7_2:+24026386 None:intergenic
AAATATGAGGGAGTTGCGAT+CGG 0.580136 7_2:-24028195 Msa1053580:CDS
ACACAAATGCATCTTCCTGT+TGG 0.581155 7_2:+24026040 None:intergenic
CAGGCTGCTTTGTTGAGTGA+AGG 0.581375 7_2:-24026654 Msa1053580:CDS
GTTGAGAACTGCTTGTGAGA+AGG 0.588118 7_2:-24026994 Msa1053580:CDS
TTTGTGAAAGCAACACAAGA+AGG 0.591303 7_2:+24028075 None:intergenic
AGCAGTTCTCAACCTCCTCA+AGG 0.592116 7_2:+24027004 None:intergenic
TTGTCTTGCTGATGCCAAGA+TGG 0.592133 7_2:-24026823 Msa1053580:CDS
ACTGCTGGAGACACGCACCT+AGG 0.597914 7_2:-24027116 Msa1053580:CDS
TTCATTCACTTGAAGCACAA+TGG 0.598922 7_2:-24028223 Msa1053580:exon
ACAGGAATAGAAGAGTTCCT+AGG 0.599069 7_2:+24026543 None:intergenic
GATAATCAACGAACCGACTG+CGG 0.599523 7_2:-24027273 Msa1053580:CDS
CTTCTAGGATTCCTAAAGTG+AGG 0.600875 7_2:-24026761 Msa1053580:CDS
TAGGTGCGTGTCTCCAGCAG+TGG 0.603195 7_2:+24027118 None:intergenic
TATCAAAGTCTTCACCGCCT+AGG 0.607358 7_2:+24027099 None:intergenic
TTTGATAGGAAGGCCGCGGG+GGG 0.609611 7_2:+24026389 None:intergenic
TGAAGACTTTGATAACAGAA+TGG 0.610392 7_2:-24027090 Msa1053580:CDS
TTGCTTTCACAAATTCCCAA+AGG 0.615627 7_2:-24028065 Msa1053580:CDS
CATCAAAAGTTCCACCGCCA+AGG 0.617660 7_2:+24027183 None:intergenic
TAAACCTTAATCAAAACTGT+GGG 0.617864 7_2:+24026480 None:intergenic
ACTTTGTGAAGGAGTTCAAG+AGG 0.618825 7_2:-24027061 Msa1053580:CDS
CAGTAGATCATTCTGAACAA+TGG 0.620189 7_2:+24027528 None:intergenic
ATAGTTTGATAGGAAGGCCG+CGG 0.620356 7_2:+24026385 None:intergenic
TAAGAGCATCAACCCTGATG+AGG 0.628505 7_2:-24026700 Msa1053580:CDS
GTTTGATAGGAAGGCCGCGG+GGG 0.628820 7_2:+24026388 None:intergenic
GAAAGCAACACAAGAAGGAG+TGG 0.629512 7_2:+24028080 None:intergenic
TTCAGAATGATCTACTGTTG+TGG 0.632222 7_2:-24027522 Msa1053580:CDS
AGAACAAAGAGGATATTAGT+GGG 0.633089 7_2:-24027037 Msa1053580:CDS
CACATGCGTAAGTCGTGCCA+AGG 0.633484 7_2:+24028166 None:intergenic
TATATTAAATGTCTCTGCTG+AGG 0.633821 7_2:-24026340 Msa1053580:CDS
ATAAACCTTAATCAAAACTG+TGG 0.642159 7_2:+24026479 None:intergenic
TTATTCTTCCCTAAAGACAA+AGG 0.642868 7_2:+24026594 None:intergenic
AATGGTGAATCACTTTGTGA+AGG 0.643840 7_2:-24027072 Msa1053580:CDS
GTTCAAGAGGAAGAACAAAG+AGG 0.645922 7_2:-24027048 Msa1053580:CDS
TCCTAGAAGAACCACCAACA+AGG 0.646014 7_2:+24026775 None:intergenic
CATATGCAACAGCCTCATCA+GGG 0.647026 7_2:+24026688 None:intergenic
TGCTTTGCTATAGATGCTGA+TGG 0.651082 7_2:-24026363 Msa1053580:CDS
GATCTTCACTTTGTCTACAG+GGG 0.654915 7_2:+24026104 None:intergenic
TCAAAAGAGAGCTAATTGTG+TGG 0.661747 7_2:-24027231 Msa1053580:CDS
GCTATGAAGAAGATCAACAA+AGG 0.662134 7_2:-24025976 Msa1053580:CDS
AATCAACGAACCGACTGCGG+CGG 0.664314 7_2:-24027270 Msa1053580:CDS
GCTGGAGCAGAACGATCGTG+TGG 0.667820 7_2:-24028133 Msa1053580:CDS
GTGGGAACCCAAAAGCCTTG+AGG 0.668086 7_2:-24027019 Msa1053580:CDS
GGAACCCAAAAGCCTTGAGG+AGG 0.669169 7_2:-24027016 Msa1053580:CDS
AGTTTGATAGGAAGGCCGCG+GGG 0.670499 7_2:+24026387 None:intergenic
TTGCTGGTCTCAATGTAATG+CGG 0.689400 7_2:-24027295 Msa1053580:CDS
GCTGGAGACACGCACCTAGG+CGG 0.697716 7_2:-24027113 Msa1053580:CDS
TCTGCTGAGGAAGAAACCAG+TGG 0.725675 7_2:-24026327 Msa1053580:CDS
ACAGATGCGAGAGATTGCAG+AGG 0.728184 7_2:-24027411 Msa1053580:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCTTACAATTAAAAATA+AGG - chr7_2:24029089-24029108 Msa1053580:intron 10.0%
!! ACACAGAAATTAAAATATTT+AGG + chr7_2:24026218-24026237 None:intergenic 15.0%
!! ATTTCTGTGTATAAATTATT+AGG - chr7_2:24026228-24026247 Msa1053580:CDS 15.0%
!!! CAATAACAATAATATTTCTA+TGG + chr7_2:24026421-24026440 None:intergenic 15.0%
!!! TTTTAAAGTTGATTTTGAAA+AGG - chr7_2:24026528-24026547 Msa1053580:CDS 15.0%
!!! TTACTTTCTAAAAACATTTT+TGG - chr7_2:24028390-24028409 Msa1053580:intron 15.0%
!! ATTACAATAACTAATGAAAA+TGG - chr7_2:24029954-24029973 Msa1053580:intron 15.0%
!!! ATTATTGTTATTGCAATCAT+TGG - chr7_2:24026428-24026447 Msa1053580:CDS 20.0%
!! ACTTAAATCATTAGGAATAA+GGG + chr7_2:24026674-24026693 None:intergenic 20.0%
!! AACTTAAATCATTAGGAATA+AGG + chr7_2:24026675-24026694 None:intergenic 20.0%
!!! ATTCCTAATGATTTAAGTTT+TGG - chr7_2:24026676-24026695 Msa1053580:CDS 20.0%
!! TAACCAAAACTTAAATCATT+AGG + chr7_2:24026682-24026701 None:intergenic 20.0%
!! TAGATTGTATCATATTATCT+TGG - chr7_2:24027426-24027445 Msa1053580:intron 20.0%
!! TATTGTGTATGAGTTTAATT+TGG - chr7_2:24027513-24027532 Msa1053580:CDS 20.0%
!! AACAATTAACATACTAACAT+CGG + chr7_2:24027711-24027730 None:intergenic 20.0%
!!! ATATTATAGATCACCATTTT+AGG - chr7_2:24028361-24028380 Msa1053580:intron 20.0%
!!! TATTATAGATCACCATTTTA+GGG - chr7_2:24028362-24028381 Msa1053580:intron 20.0%
!!! TTCATTTTAAATTGCTAACA+TGG - chr7_2:24028415-24028434 Msa1053580:intron 20.0%
!!! TCATTTTAAATTGCTAACAT+GGG - chr7_2:24028416-24028435 Msa1053580:intron 20.0%
!!! ATTTTTGGAAGTTTTGAAAA+TGG + chr7_2:24028536-24028555 None:intergenic 20.0%
!! GTTGATATGAAAATGAAAAT+AGG - chr7_2:24028630-24028649 Msa1053580:intron 20.0%
!!! AATATTTTTATCTTTGACCT+TGG - chr7_2:24029045-24029064 Msa1053580:intron 20.0%
!!! TAACATAAGTTTTTGTCTTT+TGG + chr7_2:24029728-24029747 None:intergenic 20.0%
! AAATTATTAGGAGAGTGATA+TGG - chr7_2:24026240-24026259 Msa1053580:CDS 25.0%
! AAGTGATTTAACACTATTCT+CGG + chr7_2:24026314-24026333 None:intergenic 25.0%
!!! GACTAATCGATTTTTTCATT+TGG + chr7_2:24026756-24026775 None:intergenic 25.0%
! AGCATTATAACAACAAAGAT+TGG - chr7_2:24026847-24026866 Msa1053580:CDS 25.0%
! ATAACAACAAAGATTGGATT+TGG - chr7_2:24026853-24026872 Msa1053580:CDS 25.0%
!! TTGAATATTGTATTGGCATA+GGG + chr7_2:24026904-24026923 None:intergenic 25.0%
!! TTTGAATATTGTATTGGCAT+AGG + chr7_2:24026905-24026924 None:intergenic 25.0%
! AAAAATTGGGTGTAAAAACA+AGG - chr7_2:24026983-24027002 Msa1053580:CDS 25.0%
! AGATTAAAGAATTGGAGATA+TGG - chr7_2:24027022-24027041 Msa1053580:CDS 25.0%
! TTGGTTATCAAATTTCTCAA+TGG - chr7_2:24027116-24027135 Msa1053580:CDS 25.0%
!! AATTTTATGTTCTTGGTAGA+AGG - chr7_2:24027287-24027306 Msa1053580:CDS 25.0%
!!! GGGATTTTATTTATGTAAAC+TGG - chr7_2:24027463-24027482 Msa1053580:intron 25.0%
!!! ATGTTTGATGATCTAGTTTT+TGG - chr7_2:24027543-24027562 Msa1053580:CDS 25.0%
!!! TGTATAGTAGTATTTTGGAA+AGG + chr7_2:24027943-24027962 None:intergenic 25.0%
!! TGTAGTGTATAGTAGTATTT+TGG + chr7_2:24027948-24027967 None:intergenic 25.0%
!! TTTGAATTGGCTTCAAAATT+TGG + chr7_2:24027985-24028004 None:intergenic 25.0%
! TTTGTAGAGAAGATTTGAAT+TGG + chr7_2:24027998-24028017 None:intergenic 25.0%
! ACAATGGCAAAAAAATATGA+GGG - chr7_2:24028038-24028057 Msa1053580:CDS 25.0%
! GAAATTATTCACAATGATCA+AGG - chr7_2:24028134-24028153 Msa1053580:CDS 25.0%
! AACTAAAAATTAAACAGTGC+TGG + chr7_2:24028286-24028305 None:intergenic 25.0%
! TGTGCTAGATAAAATATAGA+AGG - chr7_2:24028463-24028482 Msa1053580:intron 25.0%
!! TGCAACATATTTGACATTTT+TGG + chr7_2:24028551-24028570 None:intergenic 25.0%
! TTGCATCTGCAAAAAATTAA+GGG + chr7_2:24028667-24028686 None:intergenic 25.0%
! TTTGCATCTGCAAAAAATTA+AGG + chr7_2:24028668-24028687 None:intergenic 25.0%
! AAATAGTTCACAAGAATTGT+CGG + chr7_2:24028782-24028801 None:intergenic 25.0%
! TGTGAATCATTAAAATAAGC+AGG + chr7_2:24028901-24028920 None:intergenic 25.0%
!!! ATACATCATGGTATTGATTT+TGG - chr7_2:24029324-24029343 Msa1053580:intron 25.0%
!!! CTATTACAAGAGTTTTTCAA+GGG - chr7_2:24029510-24029529 Msa1053580:intron 25.0%
!!! TATTACAAGAGTTTTTCAAG+GGG - chr7_2:24029511-24029530 Msa1053580:intron 25.0%
! ATGTTATACCTTTGTCTTTA+GGG - chr7_2:24029643-24029662 Msa1053580:intron 25.0%
! GAATAATGTAGGAGATATTA+TGG - chr7_2:24029668-24029687 Msa1053580:intron 25.0%
! TAAACCTTAATCAAAACTGT+GGG + chr7_2:24029768-24029787 None:intergenic 25.0%
! ATAAACCTTAATCAAAACTG+TGG + chr7_2:24029769-24029788 None:intergenic 25.0%
!!! AGTTTTGATTAAGGTTTATG+AGG - chr7_2:24029770-24029789 Msa1053580:intron 25.0%
!!! GTTTTGATTAAGGTTTATGA+GGG - chr7_2:24029771-24029790 Msa1053580:intron 25.0%
! AATATCATTCTTATTACCAC+TGG + chr7_2:24029937-24029956 None:intergenic 25.0%
! AGTATTATCTTTACAATGTG+AGG - chr7_2:24030081-24030100 Msa1053580:intron 25.0%
! ATCAATTCTGCAATGATAAA+GGG - chr7_2:24030161-24030180 Msa1053580:intron 25.0%
! AATGATAAAGGGAAAAAGTT+TGG - chr7_2:24030172-24030191 Msa1053580:five_prime_UTR 25.0%
CACACTCAAGTAAAAAAACA+AGG - chr7_2:24026077-24026096 Msa1053580:CDS 30.0%
!!! TCTTCTTCTTCTTTTTTCTC+TGG - chr7_2:24026113-24026132 Msa1053580:CDS 30.0%
AGAACTCAAGTAACGTTAAA+AGG + chr7_2:24026164-24026183 None:intergenic 30.0%
GAGATTTCTTCCATCTTAAT+CGG - chr7_2:24026266-24026285 Msa1053580:CDS 30.0%
AGTGATTTAACACTATTCTC+GGG + chr7_2:24026313-24026332 None:intergenic 30.0%
GAATAGTGTTAAATCACTTG+AGG - chr7_2:24026315-24026334 Msa1053580:CDS 30.0%
!! GGAGTGTTTTAGATCTATTA+CGG - chr7_2:24026336-24026355 Msa1053580:CDS 30.0%
ACTAAGAATCGGAAAAATGT+TGG - chr7_2:24026631-24026650 Msa1053580:CDS 30.0%
TCCAATTCTTTAATCTCGAA+TGG + chr7_2:24027018-24027037 None:intergenic 30.0%
TGGAGATATGGAAAAAATGT+TGG - chr7_2:24027034-24027053 Msa1053580:CDS 30.0%
AGATATGGAAAAAATGTTGG+AGG - chr7_2:24027037-24027056 Msa1053580:CDS 30.0%
TGAAAATCAGTTCTTGGAAT+TGG - chr7_2:24027063-24027082 Msa1053580:CDS 30.0%
! GTATATCCATTAAGTTGCTT+AGG - chr7_2:24027142-24027161 Msa1053580:CDS 30.0%
AAATGAGGCGTAAAGTAAAA+TGG - chr7_2:24027356-24027375 Msa1053580:CDS 30.0%
TTTATGTAAACTGGTTAACC+TGG - chr7_2:24027472-24027491 Msa1053580:intron 30.0%
TTATGTAAACTGGTTAACCT+GGG - chr7_2:24027473-24027492 Msa1053580:intron 30.0%
CATATACCAAATTAATACCC+AGG + chr7_2:24027493-24027512 None:intergenic 30.0%
AATACTAGTCACATTGAAGA+AGG - chr7_2:24027749-24027768 Msa1053580:intron 30.0%
CACAATGGCAAAAAAATATG+AGG - chr7_2:24028037-24028056 Msa1053580:CDS 30.0%
!! TACCAAATACAGTGTTGATT+GGG + chr7_2:24028244-24028263 None:intergenic 30.0%
!! TTACCAAATACAGTGTTGAT+TGG + chr7_2:24028245-24028264 None:intergenic 30.0%
!!! AATTTTTTGCAGATGCAAAG+AGG - chr7_2:24028669-24028688 Msa1053580:intron 30.0%
! ATTTTTATCTTTGACCTTGG+CGG - chr7_2:24029048-24029067 Msa1053580:intron 30.0%
!! AAATAAGGTCTTTGAAGTCA+AGG - chr7_2:24029104-24029123 Msa1053580:intron 30.0%
! TGAAGACTTTGATAACAGAA+TGG - chr7_2:24029155-24029174 Msa1053580:intron 30.0%
AAGAACAAAGAGGATATTAG+TGG - chr7_2:24029207-24029226 Msa1053580:intron 30.0%
AGAACAAAGAGGATATTAGT+GGG - chr7_2:24029208-24029227 Msa1053580:intron 30.0%
TATAACATCTAGGTCAATTG+TGG + chr7_2:24029307-24029326 None:intergenic 30.0%
TACCATGATGTATAACATCT+AGG + chr7_2:24029317-24029336 None:intergenic 30.0%
!!! ATTTTGGTTCATCAATCACT+CGG - chr7_2:24029340-24029359 Msa1053580:intron 30.0%
CATATTCAATTGCTCAAACT+TGG + chr7_2:24029367-24029386 None:intergenic 30.0%
CAAGTTTGAGCAATTGAATA+TGG - chr7_2:24029365-24029384 Msa1053580:intron 30.0%
! GCTATTACAAGAGTTTTTCA+AGG - chr7_2:24029509-24029528 Msa1053580:intron 30.0%
GATGTTATACCTTTGTCTTT+AGG - chr7_2:24029642-24029661 Msa1053580:intron 30.0%
TTATTCTTCCCTAAAGACAA+AGG + chr7_2:24029654-24029673 None:intergenic 30.0%
! TCTTTAGGGAAGAATAATGT+AGG - chr7_2:24029657-24029676 Msa1053580:intron 30.0%
! TTATGGATGTTGTTATTCCT+AGG - chr7_2:24029685-24029704 Msa1053580:intron 30.0%
! TAAGTTTTTGTCTTTTGGAC+AGG + chr7_2:24029723-24029742 None:intergenic 30.0%
ATAGCAAAGCATAGTTTGAT+AGG + chr7_2:24029873-24029892 None:intergenic 30.0%
TATATTAAATGTCTCTGCTG+AGG - chr7_2:24029905-24029924 Msa1053580:intron 30.0%
AGTCGATGCAAGAAATAATT+TGG - chr7_2:24030058-24030077 Msa1053580:intron 30.0%
GATCAATTCTGCAATGATAA+AGG - chr7_2:24030160-24030179 Msa1053580:intron 30.0%
CTTCTTGATTTCACCTTACA+CGG + chr7_2:24026021-24026040 None:intergenic 35.0%
ACAAGAATGTCCGATTAAGA+TGG + chr7_2:24026279-24026298 None:intergenic 35.0%
GTGATTTAACACTATTCTCG+GGG + chr7_2:24026312-24026331 None:intergenic 35.0%
! TATTACGGCTCTTTCTAGAA+CGG - chr7_2:24026351-24026370 Msa1053580:CDS 35.0%
GGATTAAAGATTCATCAGAG+TGG - chr7_2:24026549-24026568 Msa1053580:CDS 35.0%
AAAGATTCATCAGAGTGGAT+TGG - chr7_2:24026554-24026573 Msa1053580:CDS 35.0%
! AAGATTCATCAGAGTGGATT+GGG - chr7_2:24026555-24026574 Msa1053580:CDS 35.0%
!! AGTGTTGAATTCAAGTTGAG+TGG - chr7_2:24026594-24026613 Msa1053580:CDS 35.0%
GTTCCACATCAACTAAGAAT+CGG - chr7_2:24026620-24026639 Msa1053580:CDS 35.0%
! TTTCCGATTCTTAGTTGATG+TGG + chr7_2:24026626-24026645 None:intergenic 35.0%
!!! GCGGGTTTTGAATATTGTAT+TGG + chr7_2:24026911-24026930 None:intergenic 35.0%
TTTAACCAATGTACCTTCCT+AGG + chr7_2:24026933-24026952 None:intergenic 35.0%
! AGGAAGGTACATTGGTTAAA+TGG - chr7_2:24026933-24026952 Msa1053580:CDS 35.0%
! GGAAGGTACATTGGTTAAAT+GGG - chr7_2:24026934-24026953 Msa1053580:CDS 35.0%
! TACATTGGTTAAATGGGAGA+GGG - chr7_2:24026940-24026959 Msa1053580:CDS 35.0%
TCGAGAGAGGGTAAAAAATT+GGG - chr7_2:24026970-24026989 Msa1053580:CDS 35.0%
GCCATTCGAGATTAAAGAAT+TGG - chr7_2:24027014-24027033 Msa1053580:CDS 35.0%
TATGGAAAAAATGTTGGAGG+AGG - chr7_2:24027040-24027059 Msa1053580:CDS 35.0%
TGTGAAAGTCAAACTGTCAA+AGG - chr7_2:24027091-24027110 Msa1053580:CDS 35.0%
! AGTCAAACTGTCAAAGGTTT+TGG - chr7_2:24027097-24027116 Msa1053580:CDS 35.0%
! TCCATTAAGTTGCTTAGGAT+TGG - chr7_2:24027147-24027166 Msa1053580:CDS 35.0%
ACCAATCCTAAGCAACTTAA+TGG + chr7_2:24027151-24027170 None:intergenic 35.0%
! ATTAAGTTGCTTAGGATTGG+TGG - chr7_2:24027150-24027169 Msa1053580:CDS 35.0%
! TTAAGTTGCTTAGGATTGGT+GGG - chr7_2:24027151-24027170 Msa1053580:CDS 35.0%
GAAAAGAAGTAAAACACTGC+AGG - chr7_2:24027245-24027264 Msa1053580:CDS 35.0%
! GAGGGACAATTTTATGTTCT+TGG - chr7_2:24027280-24027299 Msa1053580:CDS 35.0%
GGTTAACCTGGGTATTAATT+TGG - chr7_2:24027484-24027503 Msa1053580:intron 35.0%
ACTAGCTATCACATTGAAGA+AGG - chr7_2:24027798-24027817 Msa1053580:intron 35.0%
CATTGAAGAAGGAAAAGTCA+TGG - chr7_2:24027809-24027828 Msa1053580:intron 35.0%
TTCATTCACTTGAAGCACAA+TGG - chr7_2:24028022-24028041 Msa1053580:CDS 35.0%
TTTGTGAAAGCAACACAAGA+AGG + chr7_2:24028173-24028192 None:intergenic 35.0%
TTGCTTTCACAAATTCCCAA+AGG - chr7_2:24028180-24028199 Msa1053580:CDS 35.0%
! GTTAGAAGAAGCCTGATTTT+TGG + chr7_2:24028222-24028241 None:intergenic 35.0%
AACCCAATCAACACTGTATT+TGG - chr7_2:24028239-24028258 Msa1053580:five_prime_UTR 35.0%
AAAGTAAACACGCCCTAAAA+TGG + chr7_2:24028377-24028396 None:intergenic 35.0%
ATGCAAAGAGGTTAATTGGA+AGG - chr7_2:24028681-24028700 Msa1053580:intron 35.0%
CAGTAGATCATTCTGAACAA+TGG + chr7_2:24028720-24028739 None:intergenic 35.0%
TTCAGAATGATCTACTGTTG+TGG - chr7_2:24028723-24028742 Msa1053580:intron 35.0%
AATATCACCTGCATCTTTAG+TGG + chr7_2:24028932-24028951 None:intergenic 35.0%
!! CACAATTAGCTCTCTTTTGA+AGG + chr7_2:24029014-24029033 None:intergenic 35.0%
TCAAAAGAGAGCTAATTGTG+TGG - chr7_2:24029014-24029033 Msa1053580:intron 35.0%
AATGGTGAATCACTTTGTGA+AGG - chr7_2:24029173-24029192 Msa1053580:intron 35.0%
GACCTAGATGTTATACATCA+TGG - chr7_2:24029312-24029331 Msa1053580:intron 35.0%
!!! TTTTGGTTCATCAATCACTC+GGG - chr7_2:24029341-24029360 Msa1053580:intron 35.0%
! TGTCCATACACTTTTCAAAG+AGG + chr7_2:24029392-24029411 None:intergenic 35.0%
TACACTATTCTTGTCCATCT+TGG + chr7_2:24029439-24029458 None:intergenic 35.0%
CAAAGCATAGTTTGATAGGA+AGG + chr7_2:24029869-24029888 None:intergenic 35.0%
!! CTTTGAAATTGTTAGCTTCC+TGG + chr7_2:24030013-24030032 None:intergenic 35.0%
CAATGTGAGGAAAGTAATGA+AGG - chr7_2:24030094-24030113 Msa1053580:intron 35.0%
TGATCTTCACTTTGTCTACA+GGG + chr7_2:24030145-24030164 None:intergenic 35.0%
TTGATCTTCACTTTGTCTAC+AGG + chr7_2:24030146-24030165 None:intergenic 35.0%
! TGTGTTTGTGGACTTTTTGA+AGG - chr7_2:24030223-24030242 Msa1053580:five_prime_UTR 35.0%
GCTATGAAGAAGATCAACAA+AGG - chr7_2:24030269-24030288 Msa1053580:five_prime_UTR 35.0%
GTACTTGTGTTAAGTCTCCT+AGG - chr7_2:24026704-24026723 Msa1053580:CDS 40.0%
! ATTGTATTGGCATAGGGTTG+TGG + chr7_2:24026898-24026917 None:intergenic 40.0%
ACAATATTCAAAACCCGCCT+AGG - chr7_2:24026913-24026932 Msa1053580:CDS 40.0%
! GTACATTGGTTAAATGGGAG+AGG - chr7_2:24026939-24026958 Msa1053580:CDS 40.0%
CTCGAGAGAGGGTAAAAAAT+TGG - chr7_2:24026969-24026988 Msa1053580:CDS 40.0%
AGGAGGTGAAAATCAGTTCT+TGG - chr7_2:24027057-24027076 Msa1053580:CDS 40.0%
TATGTTCTTGGTAGAAGGAC+TGG - chr7_2:24027292-24027311 Msa1053580:CDS 40.0%
GAGAGTAGATGGATGAAATG+AGG - chr7_2:24027341-24027360 Msa1053580:CDS 40.0%
ATCTTGGCGAGTCTTCTATT+TGG - chr7_2:24027442-24027461 Msa1053580:intron 40.0%
TCTTGGCGAGTCTTCTATTT+GGG - chr7_2:24027443-24027462 Msa1053580:intron 40.0%
CTTCAATGTGATAGCTAGTG+AGG + chr7_2:24027797-24027816 None:intergenic 40.0%
GAAAAGTCATGGCTTCTGAT+AGG - chr7_2:24027820-24027839 Msa1053580:intron 40.0%
AAATATGAGGGAGTTGCGAT+CGG - chr7_2:24028050-24028069 Msa1053580:CDS 40.0%
ACAAATTCCCAAAGGCTGAT+TGG - chr7_2:24028188-24028207 Msa1053580:CDS 40.0%
!! AGAAGAAGCCTGATTTTTGG+CGG + chr7_2:24028219-24028238 None:intergenic 40.0%
GCAGATGCAAAGAGGTTAAT+TGG - chr7_2:24028677-24028696 Msa1053580:intron 40.0%
!!! AGAGATTGCAGAGGCATTTT+TGG - chr7_2:24028843-24028862 Msa1053580:intron 40.0%
GTGATCACTGCATTCTTAAC+AGG + chr7_2:24028874-24028893 None:intergenic 40.0%
AAAGATGCAGGTGATATTGC+TGG - chr7_2:24028934-24028953 Msa1053580:intron 40.0%
! TTGCTGGTCTCAATGTAATG+CGG - chr7_2:24028950-24028969 Msa1053580:intron 40.0%
ACTTTGTGAAGGAGTTCAAG+AGG - chr7_2:24029184-24029203 Msa1053580:intron 40.0%
GTTCAAGAGGAAGAACAAAG+AGG - chr7_2:24029197-24029216 Msa1053580:intron 40.0%
ATCTAGGTCAATTGTGGCTT+CGG + chr7_2:24029301-24029320 None:intergenic 40.0%
! GGTCCTCTTTGAAAAGTGTA+TGG - chr7_2:24029386-24029405 Msa1053580:intron 40.0%
GTAGATGATGTTGTCCTTGT+TGG - chr7_2:24029456-24029475 Msa1053580:intron 40.0%
!! CTTCTAGGATTCCTAAAGTG+AGG - chr7_2:24029484-24029503 Msa1053580:intron 40.0%
TGTAATAGCTGCCTCACTTT+AGG + chr7_2:24029498-24029517 None:intergenic 40.0%
! ACATCTCGAAGTGTCAAGTT+TGG + chr7_2:24029627-24029646 None:intergenic 40.0%
ACAGGAATAGAAGAGTTCCT+AGG + chr7_2:24029705-24029724 None:intergenic 40.0%
CCTTAATCAAAACTGTGGGT+TGG + chr7_2:24029764-24029783 None:intergenic 40.0%
!!! CCAACCCACAGTTTTGATTA+AGG - chr7_2:24029761-24029780 Msa1053580:intron 40.0%
!!! ACCAAGCAAGTTGTTTTGAC+TGG + chr7_2:24029811-24029830 None:intergenic 40.0%
! TGCTTTGCTATAGATGCTGA+TGG - chr7_2:24029882-24029901 Msa1053580:intron 40.0%
AGAGATTGAGAGAATGATCC+AGG - chr7_2:24029992-24030011 Msa1053580:intron 40.0%
GATCTTCACTTTGTCTACAG+GGG + chr7_2:24030144-24030163 None:intergenic 40.0%
!! TTTGGTTGATGACAACCAAC+AGG - chr7_2:24030190-24030209 Msa1053580:five_prime_UTR 40.0%
ACACAAATGCATCTTCCTGT+TGG + chr7_2:24030208-24030227 None:intergenic 40.0%
GGAAGATGCATTTGTGTTTG+TGG - chr7_2:24030211-24030230 Msa1053580:five_prime_UTR 40.0%
TTGACAGTTCAGTCCGTGTA+AGG - chr7_2:24026005-24026024 Msa1053580:CDS 45.0%
CATTGGAGAGTGAGAAGTCA+CGG - chr7_2:24026445-24026464 Msa1053580:CDS 45.0%
TAAGTCTCCTAGGCACTCTT+TGG - chr7_2:24026714-24026733 Msa1053580:CDS 45.0%
AAGTCTCCTAGGCACTCTTT+GGG - chr7_2:24026715-24026734 Msa1053580:CDS 45.0%
! TAGGCACTCTTTGGGAGTTT+GGG - chr7_2:24026723-24026742 Msa1053580:CDS 45.0%
! ACTCTTTGGGAGTTTGGGAA+GGG - chr7_2:24026728-24026747 Msa1053580:CDS 45.0%
TATTGGCATAGGGTTGTGGA+GGG + chr7_2:24026894-24026913 None:intergenic 45.0%
TATTCAAAACCCGCCTAGGA+AGG - chr7_2:24026917-24026936 Msa1053580:CDS 45.0%
AACCAATGTACCTTCCTAGG+CGG + chr7_2:24026930-24026949 None:intergenic 45.0%
! TAGGATTGGTGGGTCTGTTA+TGG - chr7_2:24027161-24027180 Msa1053580:CDS 45.0%
AAACCAGATAGTTTCGCTGC+AGG - chr7_2:24027203-24027222 Msa1053580:CDS 45.0%
! TAGTTTCGCTGCAGGACTTT+TGG - chr7_2:24027211-24027230 Msa1053580:CDS 45.0%
TGCAGGCATAGAAGAAGTGA+GGG - chr7_2:24027262-24027281 Msa1053580:CDS 45.0%
TTGGTAGAAGGACTGGAAGT+GGG - chr7_2:24027299-24027318 Msa1053580:CDS 45.0%
TGGAAGTGGGGGATAGAAAT+GGG - chr7_2:24027312-24027331 Msa1053580:CDS 45.0%
CTTACGCATGTGTTGGAGTA+TGG - chr7_2:24028090-24028109 Msa1053580:CDS 45.0%
GAAAGCAACACAAGAAGGAG+TGG + chr7_2:24028168-24028187 None:intergenic 45.0%
!! TGTCGGTTTGTCATTAGCAC+CGG + chr7_2:24028765-24028784 None:intergenic 45.0%
GATAATCAACGAACCGACTG+CGG - chr7_2:24028972-24028991 Msa1053580:intron 45.0%
TTTATCTTTGACCTTGGCGG+TGG - chr7_2:24029051-24029070 Msa1053580:intron 45.0%
TATCAAAGTCTTCACCGCCT+AGG + chr7_2:24029149-24029168 None:intergenic 45.0%
! TCAACCTCCTCAAGGCTTTT+GGG + chr7_2:24029236-24029255 None:intergenic 45.0%
GTTGAGAACTGCTTGTGAGA+AGG - chr7_2:24029251-24029270 Msa1053580:intron 45.0%
CTGCTTGTGAGAAGGCAAAA+AGG - chr7_2:24029259-24029278 Msa1053580:intron 45.0%
TTGTCTTGCTGATGCCAAGA+TGG - chr7_2:24029422-24029441 Msa1053580:intron 45.0%
GATGATGTTGTCCTTGTTGG+TGG - chr7_2:24029459-24029478 Msa1053580:intron 45.0%
!! TCCTTGTTGGTGGTTCTTCT+AGG - chr7_2:24029469-24029488 Msa1053580:intron 45.0%
TCCTAGAAGAACCACCAACA+AGG + chr7_2:24029473-24029492 None:intergenic 45.0%
!! TAAGAGCATCAACCCTGATG+AGG - chr7_2:24029545-24029564 Msa1053580:intron 45.0%
CATATGCAACAGCCTCATCA+GGG + chr7_2:24029560-24029579 None:intergenic 45.0%
! GCCAGTCAAAACAACTTGCT+TGG - chr7_2:24029807-24029826 Msa1053580:intron 45.0%
ATAGTTTGATAGGAAGGCCG+CGG + chr7_2:24029863-24029882 None:intergenic 45.0%
!! TACGGCTCTTTCTAGAACGG+AGG - chr7_2:24026354-24026373 Msa1053580:CDS 50.0%
!! CAAACTCCCAAAGAGTGCCT+AGG + chr7_2:24026724-24026743 None:intergenic 50.0%
! CTAGGCACTCTTTGGGAGTT+TGG - chr7_2:24026722-24026741 Msa1053580:CDS 50.0%
! CACTCTTTGGGAGTTTGGGA+AGG - chr7_2:24026727-24026746 Msa1053580:CDS 50.0%
! CTCTTTGGGAGTTTGGGAAG+GGG - chr7_2:24026729-24026748 Msa1053580:CDS 50.0%
! GTATTGGCATAGGGTTGTGG+AGG + chr7_2:24026895-24026914 None:intergenic 50.0%
ACCAATGTACCTTCCTAGGC+GGG + chr7_2:24026929-24026948 None:intergenic 50.0%
! GATTGGTGGGTCTGTTATGG+TGG - chr7_2:24027164-24027183 Msa1053580:CDS 50.0%
AGTCCTGCAGCGAAACTATC+TGG + chr7_2:24027209-24027228 None:intergenic 50.0%
CTGCAGGCATAGAAGAAGTG+AGG - chr7_2:24027261-24027280 Msa1053580:CDS 50.0%
CTTGGTAGAAGGACTGGAAG+TGG - chr7_2:24027298-24027317 Msa1053580:CDS 50.0%
TGGTAGAAGGACTGGAAGTG+GGG - chr7_2:24027300-24027319 Msa1053580:CDS 50.0%
CTGGAAGTGGGGGATAGAAA+TGG - chr7_2:24027311-24027330 Msa1053580:CDS 50.0%
AAGTGGGGGATAGAAATGGG+TGG - chr7_2:24027315-24027334 Msa1053580:CDS 50.0%
ATGGGTGGAAGGAGAGTAGA+TGG - chr7_2:24027330-24027349 Msa1053580:CDS 50.0%
GTTGCGATCGGAATTGACCT+TGG - chr7_2:24028062-24028081 Msa1053580:CDS 50.0%
GGCATCACCAATCAGCCTTT+GGG + chr7_2:24028198-24028217 None:intergenic 50.0%
! TGGTGATGCCGCCAAAAATC+AGG - chr7_2:24028208-24028227 Msa1053580:exon 50.0%
TCTACTGTTGTGGCCCTTCA+AGG - chr7_2:24028733-24028752 Msa1053580:intron 50.0%
CAATCTCTCGCATCTGTGAG+AGG + chr7_2:24028831-24028850 None:intergenic 50.0%
ACAGATGCGAGAGATTGCAG+AGG - chr7_2:24028834-24028853 Msa1053580:intron 50.0%
CGAAGAGCCACTAAAGATGC+AGG - chr7_2:24028922-24028941 Msa1053580:intron 50.0%
CATCAAAAGTTCCACCGCCA+AGG + chr7_2:24029065-24029084 None:intergenic 50.0%
! TTTGAAGTCAAGGCCACTGC+TGG - chr7_2:24029114-24029133 Msa1053580:intron 50.0%
! CTCAACCTCCTCAAGGCTTT+TGG + chr7_2:24029237-24029256 None:intergenic 50.0%
AGCAGTTCTCAACCTCCTCA+AGG + chr7_2:24029244-24029263 None:intergenic 50.0%
CCATATGCAACAGCCTCATC+AGG + chr7_2:24029561-24029580 None:intergenic 50.0%
CCTGATGAGGCTGTTGCATA+TGG - chr7_2:24029558-24029577 Msa1053580:intron 50.0%
! CAGGCTGCTTTGTTGAGTGA+AGG - chr7_2:24029591-24029610 Msa1053580:intron 50.0%
TAGTTTGATAGGAAGGCCGC+GGG + chr7_2:24029862-24029881 None:intergenic 50.0%
TCTGCTGAGGAAGAAACCAG+TGG - chr7_2:24029918-24029937 Msa1053580:intron 50.0%
TTTGTCTACAGGGGTGAGCT+TGG + chr7_2:24030135-24030154 None:intergenic 50.0%
! ACCCGCCTAGGAAGGTACAT+TGG - chr7_2:24026925-24026944 Msa1053580:CDS 55.0%
GGTAGAAGGACTGGAAGTGG+GGG - chr7_2:24027301-24027320 Msa1053580:CDS 55.0%
GGGGGATAGAAATGGGTGGA+AGG - chr7_2:24027319-24027338 Msa1053580:CDS 55.0%
CACATGCGTAAGTCGTGCCA+AGG + chr7_2:24028082-24028101 None:intergenic 55.0%
GGCACGACTTACGCATGTGT+TGG - chr7_2:24028083-24028102 Msa1053580:CDS 55.0%
CGCATGTGTTGGAGTATGGC+TGG - chr7_2:24028094-24028113 Msa1053580:CDS 55.0%
CGGCATCACCAATCAGCCTT+TGG + chr7_2:24028199-24028218 None:intergenic 55.0%
TGGCCCTTCAAGGTCATTGC+CGG - chr7_2:24028743-24028762 Msa1053580:intron 55.0%
! GCACCGGCAATGACCTTGAA+GGG + chr7_2:24028749-24028768 None:intergenic 55.0%
!! AGCACCGGCAATGACCTTGA+AGG + chr7_2:24028750-24028769 None:intergenic 55.0%
AATCAACGAACCGACTGCGG+CGG - chr7_2:24028975-24028994 Msa1053580:intron 55.0%
GTGGGAACCCAAAAGCCTTG+AGG - chr7_2:24029226-24029245 Msa1053580:intron 55.0%
GGAACCCAAAAGCCTTGAGG+AGG - chr7_2:24029229-24029248 Msa1053580:intron 55.0%
!! TGCATATGGTGCTGCTGTGC+AGG - chr7_2:24029572-24029591 Msa1053580:intron 55.0%
AAAATTGCTCTTGCCCCCCG+CGG - chr7_2:24029843-24029862 Msa1053580:intron 55.0%
AGTTTGATAGGAAGGCCGCG+GGG + chr7_2:24029861-24029880 None:intergenic 55.0%
! AGAGGGTGTGCTCTCGAGAG+AGG - chr7_2:24026957-24026976 Msa1053580:CDS 60.0%
! GAGGGTGTGCTCTCGAGAGA+GGG - chr7_2:24026958-24026977 Msa1053580:CDS 60.0%
GCTGGAGCAGAACGATCGTG+TGG - chr7_2:24028112-24028131 Msa1053580:CDS 60.0%
TATGCAAGAGCCGCCGCAGT+CGG + chr7_2:24028988-24029007 None:intergenic 60.0%
ACTGCGGCGGCTCTTGCATA+TGG - chr7_2:24028988-24029007 Msa1053580:intron 60.0%
TAGGTGCGTGTCTCCAGCAG+TGG + chr7_2:24029130-24029149 None:intergenic 60.0%
ACTGCTGGAGACACGCACCT+AGG - chr7_2:24029129-24029148 Msa1053580:intron 60.0%
TTTGATAGGAAGGCCGCGGG+GGG + chr7_2:24029859-24029878 None:intergenic 60.0%
GTTTGATAGGAAGGCCGCGG+GGG + chr7_2:24029860-24029879 None:intergenic 60.0%
GCTGGAGACACGCACCTAGG+CGG - chr7_2:24029132-24029151 Msa1053580:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 24025972 24030295 24025972 ID=Msa1053580;Name=Msa1053580
chr7_2 mRNA 24025972 24030295 24025972 ID=Msa1053580-mRNA-1;Parent=Msa1053580;Name=Msa1053580-mRNA-1;_AED=0.04;_eAED=0.04;_QI=236|0.66|0.5|1|0.66|0.5|4|0|583
chr7_2 exon 24025972 24027429 24025972 ID=Msa1053580-mRNA-1:exon:5253;Parent=Msa1053580-mRNA-1
chr7_2 exon 24027513 24027586 24027513 ID=Msa1053580-mRNA-1:exon:5252;Parent=Msa1053580-mRNA-1
chr7_2 exon 24028007 24028335 24028007 ID=Msa1053580-mRNA-1:exon:5251;Parent=Msa1053580-mRNA-1
chr7_2 exon 24030169 24030295 24030169 ID=Msa1053580-mRNA-1:exon:5250;Parent=Msa1053580-mRNA-1
chr7_2 five_prime_UTR 24030169 24030295 24030169 ID=Msa1053580-mRNA-1:five_prime_utr;Parent=Msa1053580-mRNA-1
chr7_2 five_prime_UTR 24028227 24028335 24028227 ID=Msa1053580-mRNA-1:five_prime_utr;Parent=Msa1053580-mRNA-1
chr7_2 CDS 24028007 24028226 24028007 ID=Msa1053580-mRNA-1:cds;Parent=Msa1053580-mRNA-1
chr7_2 CDS 24027513 24027586 24027513 ID=Msa1053580-mRNA-1:cds;Parent=Msa1053580-mRNA-1
chr7_2 CDS 24025972 24027429 24025972 ID=Msa1053580-mRNA-1:cds;Parent=Msa1053580-mRNA-1
Gene Sequence

>Msa1053580

ATGGCAAAAAAATATGAGGGAGTTGCGATCGGAATTGACCTTGGCACGACTTACGCATGTGTTGGAGTATGGCTGGAGCAGAACGATCGTGTGGAAATTATTCACAATGATCAAGGAAACAAAACCACTCCTTCTTGTGTTGCTTTCACAAATTCCCAAAGGCTGATTGGTGATGCCGCCAAAAATCAGGCTTCTTCTAACCCAATCAACACTGTATTTGATGCAAAGAGGTTAATTGGAAGGAAATATAGTGATTCCATTGTTCAGAATGATCTACTGTTGTGGCCCTTCAAGATGCGAGAGATTGCAGAGGCATTTTTGGAGTCACCTGTTAAGAATGCAGTGATCACTGTACCTGCTTATTTTAATGATTCACAACGAAGAGCCACTAAAGATGCAGGTGATATTGCTGGTCTCAATGTAATGCGGATAATCAACGAACCGACTGCGGCGGCTCTTGCATATGGCCTTCAAAAGAGAGCTAATTGTGTGGATAAGAGAAATATTTTTATCTTTGACCTTGGCGGTGGAACTTTTGATGTGTCTATTCTTACAATTAAAAATAAGGTCTTTGAAGTCAAGGCCACTGCTGGAGACACGCACCTAGGCGGTGAAGACTTTGATAACAGAATGGTGAATCACTTTGTGAAGGAGTTCAAGAGGAAGAACAAAGAGGATATTAGTGGGAACCCAAAAGCCTTGAGGAGGTTGAGAACTGCTTGTGAGAAGGCAAAAAGGACACTTTCATATAACACCGAAGCCACAATTGACCTAGATGTTATACATCATGGTATTGATTTTGGTTCATCAATCACTCGGGCCAAGTTTGAGCAATTGAATATGGTCCTCTTTGAAAAGTGTATGGACATTGTTAATAGTTGTCTTGCTGATGCCAAGATGGACAAGAATAGTGTAGATGATGTTGTCCTTGTTGGTGGTTCTTCTAGGATTCCTAAAGTGAGGCAGCTATTACAAGAGTTTTTCAAGGGGAAAGAATTATGTAAGAGCATCAACCCTGATGAGGCTGTTGCATATGGTGCTGCTGTGCAGGCTGCTTTGTTGAGTGAAGGTACGACTGTTCCAAACTTGACACTTCGAGATGTTATACCTTTGTCTTTAGGGAAGAATAATGTAGGAGATATTATGGATGTTGTTATTCCTAGGAACTCTTCTATTCCTGTCCAAAAGACAAAAACTTATGTTACTGTGAGTGATAACCAACCCACAGTTTTGATTAAGGTTTATGAGGGTGAGAGAATAGTAGCCAGTCAAAACAACTTGCTTGGTTTATTTGAACTCAAAATTGCTCTTGCCCCCCGCGGCCTTCCTATCAAACTATGCTTTGCTATAGATGCTGATGGTATATTAAATGTCTCTGCTGAGGAAGAAACCAGTGGTAATAAGAATGATATTACAATAACTAATGAAAATGGCAGACTATCAAAAGAAGAGATTGAGAGAATGATCCAGGAAGCTAACAATTTCAAAGCTCAAGATATGAAGTTCAAAAAGAAAGTCGATGCAAGAAATAATTTGGAGTATTATCTTTACAATGTGAGGAAAGTAATGAAGGATGATTGTGTTAGTTCCAAGCTCACCCCTGTAGACAAAGTGAAGATCAATTCTGCAATGATAAAGGGAAAAAGTTTGGTTGATGACAACCAACAGGAAGATGCATTTGTGTTTGTGGACTTTTTGAAGGAGCTTGAGAGCATCTTTGAATCTGCTATGAAGAAGATCAACAAAGGTTAA
Protein sequence

>Msa1053580

MAKKYEGVAIGIDLGTTYACVGVWLEQNDRVEIIHNDQGNKTTPSCVAFTNSQRLIGDAAKNQASSNPINTVFDAKRLIGRKYSDSIVQNDLLLWPFKMREIAEAFLESPVKNAVITVPAYFNDSQRRATKDAGDIAGLNVMRIINEPTAAALAYGLQKRANCVDKRNIFIFDLGGGTFDVSILTIKNKVFEVKATAGDTHLGGEDFDNRMVNHFVKEFKRKNKEDISGNPKALRRLRTACEKAKRTLSYNTEATIDLDVIHHGIDFGSSITRAKFEQLNMVLFEKCMDIVNSCLADAKMDKNSVDDVVLVGGSSRIPKVRQLLQEFFKGKELCKSINPDEAVAYGAAVQAALLSEGTTVPNLTLRDVIPLSLGKNNVGDIMDVVIPRNSSIPVQKTKTYVTVSDNQPTVLIKVYEGERIVASQNNLLGLFELKIALAPRGLPIKLCFAIDADGILNVSAEEETSGNKNDITITNENGRLSKEEIERMIQEANNFKAQDMKFKKKVDARNNLEYYLYNVRKVMKDDCVSSKLTPVDKVKINSAMIKGKSLVDDNQQEDAFVFVDFLKELESIFESAMKKINKG*