Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054220 | XP_003622102.1 | 98.020 | 101 | 2 | 0 | 1 | 101 | 1 | 101 | 9.65e-67 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054220 | sp|Q9LSD8|MUB4_ARATH | 75.248 | 101 | 25 | 0 | 1 | 101 | 1 | 101 | 1.57e-53 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054220 | G7L246 | 98.020 | 101 | 2 | 0 | 1 | 101 | 1 | 101 | 4.61e-67 | 207 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1054220 | Msa1094430 | 0.827337 | 1.653772e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054220 | MtrunA17_Chr7g0224251 | 98.020 | 101 | 2 | 0 | 1 | 101 | 1 | 101 | 8.87e-71 | 207 |
| Msa1054220 | MtrunA17_Chr7g0224241 | 89.189 | 111 | 12 | 0 | 1 | 111 | 1 | 111 | 1.76e-69 | 211 |
| Msa1054220 | MtrunA17_Chr8g0386041 | 65.347 | 101 | 35 | 0 | 1 | 101 | 1 | 101 | 5.93e-50 | 154 |
| Msa1054220 | MtrunA17_Chr7g0218501 | 56.989 | 93 | 38 | 1 | 3 | 93 | 4 | 96 | 2.13e-34 | 115 |
| Msa1054220 | MtrunA17_Chr7g0268701 | 52.525 | 99 | 45 | 2 | 4 | 101 | 5 | 102 | 2.17e-33 | 112 |
| Msa1054220 | MtrunA17_Chr6g0454091 | 57.471 | 87 | 37 | 0 | 7 | 93 | 8 | 94 | 2.92e-33 | 112 |
| Msa1054220 | MtrunA17_Chr8g0386071 | 48.485 | 66 | 34 | 0 | 48 | 113 | 20 | 85 | 3.58e-15 | 65.5 |
| Msa1054220 | MtrunA17_Chr8g0386061 | 53.488 | 43 | 20 | 0 | 1 | 43 | 1 | 43 | 1.42e-12 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054220 | AT3G26980.1 | 75.248 | 101 | 25 | 0 | 1 | 101 | 1 | 101 | 1.60e-54 | 166 |
| Msa1054220 | AT4G24990.2 | 63.366 | 101 | 37 | 0 | 1 | 101 | 1 | 101 | 1.12e-48 | 151 |
| Msa1054220 | AT4G24990.1 | 63.366 | 101 | 37 | 0 | 1 | 101 | 1 | 101 | 1.12e-48 | 151 |
| Msa1054220 | AT1G77870.1 | 55.340 | 103 | 44 | 1 | 1 | 101 | 1 | 103 | 6.27e-35 | 116 |
| Msa1054220 | AT1G22050.1 | 53.125 | 96 | 44 | 1 | 3 | 97 | 4 | 99 | 1.56e-34 | 115 |
| Msa1054220 | AT5G15460.2 | 54.651 | 86 | 39 | 0 | 7 | 92 | 8 | 93 | 1.22e-31 | 108 |
| Msa1054220 | AT5G15460.1 | 54.651 | 86 | 39 | 0 | 7 | 92 | 8 | 93 | 1.22e-31 | 108 |
| Msa1054220 | AT5G15460.4 | 54.651 | 86 | 39 | 0 | 7 | 92 | 8 | 93 | 1.22e-31 | 108 |
| Msa1054220 | AT3G01050.2 | 50.000 | 86 | 43 | 0 | 7 | 92 | 8 | 93 | 3.16e-27 | 97.1 |
| Msa1054220 | AT3G01050.3 | 50.000 | 86 | 43 | 0 | 7 | 92 | 8 | 93 | 3.16e-27 | 97.1 |
| Msa1054220 | AT3G01050.1 | 50.000 | 86 | 43 | 0 | 7 | 92 | 8 | 93 | 3.16e-27 | 97.1 |
| Msa1054220 | AT3G01050.4 | 50.000 | 86 | 43 | 0 | 7 | 92 | 8 | 93 | 3.16e-27 | 97.1 |
| Msa1054220 | AT3G01050.5 | 50.000 | 86 | 43 | 0 | 7 | 92 | 8 | 93 | 3.16e-27 | 97.1 |
| Msa1054220 | AT5G15460.3 | 54.902 | 51 | 23 | 0 | 42 | 92 | 17 | 67 | 7.33e-14 | 62.8 |
Find 27 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAAATGCTGGCAAAATTT+TGG | 0.148008 | 7_2:+25553128 | Msa1054220:CDS |
| TGTTGTCGTTCAGCCATCTT+TGG | 0.348360 | 7_2:+25553221 | Msa1054220:CDS |
| TATCTGATCCATCGTATATA+CGG | 0.369078 | 7_2:-25550088 | None:intergenic |
| ATATACGATGGATCAGATAT+TGG | 0.380125 | 7_2:+25550092 | Msa1054220:CDS |
| GGCCAATGTAGAGTACCTTT+TGG | 0.427256 | 7_2:+25553168 | Msa1054220:CDS |
| TGAAGTTGGTGAATAAGAAA+AGG | 0.430837 | 7_2:-25550117 | None:intergenic |
| AGCTCCACCAATTCATCATC+AGG | 0.438663 | 7_2:-25550059 | None:intergenic |
| CGAGATGCCTGATGATGAAT+TGG | 0.447255 | 7_2:+25550052 | Msa1054220:exon |
| TTAATATCACTTGCTGCCCT+TGG | 0.457315 | 7_2:-25553102 | None:intergenic |
| TCTTTGGCAAAAGCGAAAAC+AGG | 0.475441 | 7_2:+25553237 | Msa1054220:CDS |
| GATATTAAACTCATAAATGC+TGG | 0.505519 | 7_2:+25553117 | Msa1054220:CDS |
| GAAGTTGGTGAATAAGAAAA+GGG | 0.509171 | 7_2:-25550116 | None:intergenic |
| TTCAACTGTTTCCATGCTCA+AGG | 0.518291 | 7_2:+25550136 | Msa1054220:CDS |
| CCAGAAGGAAGCTCACCAAA+AGG | 0.552790 | 7_2:-25553183 | None:intergenic |
| CTGTTTCCATGCTCAAGGAA+AGG | 0.562351 | 7_2:+25550141 | Msa1054220:CDS |
| AGCATGGAAACAGTTGAAGT+TGG | 0.586596 | 7_2:-25550131 | None:intergenic |
| TGCATGGTGATGACCCCAGA+AGG | 0.596413 | 7_2:-25553198 | None:intergenic |
| CACCAAAAGGTACTCTACAT+TGG | 0.603291 | 7_2:-25553170 | None:intergenic |
| TTGGAGAACAACAAGACGGT+GGG | 0.608984 | 7_2:+25553147 | Msa1054220:CDS |
| GATGCCTGATGATGAATTGG+TGG | 0.609921 | 7_2:+25550055 | Msa1054220:exon |
| AGACAAGAAAATTATACCAA+GGG | 0.613126 | 7_2:+25553086 | Msa1054220:intron |
| CTGAAGTTCCGTATATACGA+TGG | 0.627299 | 7_2:+25550080 | Msa1054220:CDS |
| TTGTTTGTAATAAGCAAACA+TGG | 0.646664 | 7_2:-25549900 | None:intergenic |
| CAGACAAGAAAATTATACCA+AGG | 0.653948 | 7_2:+25553085 | Msa1054220:intron |
| TTTGGAGAACAACAAGACGG+TGG | 0.663548 | 7_2:+25553146 | Msa1054220:CDS |
| TGGCTGAACGACAACATGCA+TGG | 0.679504 | 7_2:-25553214 | None:intergenic |
| TTTGTAATAAGCAAACATGG+TGG | 0.688014 | 7_2:-25549897 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTGAATTATTTAAAAT+AGG | + | chr7_2:25552761-25552780 | Msa1054220:intron | 10.0% |
| !! | TATGTAATTAATTAACCTTT+GGG | - | chr7_2:25550182-25550201 | None:intergenic | 15.0% |
| !! | TTATGTAATTAATTAACCTT+TGG | - | chr7_2:25550183-25550202 | None:intergenic | 15.0% |
| !! | TTAATATGTTTATTCTCAAA+TGG | + | chr7_2:25551158-25551177 | Msa1054220:intron | 15.0% |
| !! | TAATATGTTTATTCTCAAAT+GGG | + | chr7_2:25551159-25551178 | Msa1054220:intron | 15.0% |
| !! | CAACAAATATTAATGTTTAT+CGG | - | chr7_2:25551460-25551479 | None:intergenic | 15.0% |
| !!! | TTATTTAAAATAGGATAAGA+TGG | + | chr7_2:25552770-25552789 | Msa1054220:intron | 15.0% |
| !!! | AAAAGACACATTTTTATAAA+TGG | - | chr7_2:25553060-25553079 | None:intergenic | 15.0% |
| !! | AAATAAAAGGGATTTAAATA+AGG | + | chr7_2:25553363-25553382 | Msa1054220:intron | 15.0% |
| !! | TCAAAATAATCCAATTATAT+TGG | + | chr7_2:25553408-25553427 | Msa1054220:intron | 15.0% |
| !! | AATATGTTTATTCTCAAATG+GGG | + | chr7_2:25551160-25551179 | Msa1054220:intron | 20.0% |
| !!! | AAAATGCTTTTGTATTCAAT+TGG | + | chr7_2:25551263-25551282 | Msa1054220:intron | 20.0% |
| !!! | AAATGCTTTTGTATTCAATT+GGG | + | chr7_2:25551264-25551283 | Msa1054220:intron | 20.0% |
| !!! | ATGTCATAAGATTAGTTTTT+CGG | + | chr7_2:25551351-25551370 | Msa1054220:intron | 20.0% |
| !!! | AAAGAAAACTTTACTGTTTT+TGG | + | chr7_2:25551411-25551430 | Msa1054220:intron | 20.0% |
| !! | CGATAAACATTAATATTTGT+TGG | + | chr7_2:25551458-25551477 | Msa1054220:intron | 20.0% |
| !!! | AATATTTGTTGGATTAGTAA+TGG | + | chr7_2:25551469-25551488 | Msa1054220:intron | 20.0% |
| !! | ACGTATACTTATTAATTGTT+TGG | + | chr7_2:25551610-25551629 | Msa1054220:intron | 20.0% |
| !!! | CTTGATTTTGTAAATTCATT+CGG | + | chr7_2:25551664-25551683 | Msa1054220:intron | 20.0% |
| !! | TATAAATAAGTGGTTAGATT+TGG | + | chr7_2:25551777-25551796 | Msa1054220:intron | 20.0% |
| !! | AAAAATATTCCTGTTTAACT+CGG | - | chr7_2:25552376-25552395 | None:intergenic | 20.0% |
| !!! | AATATTTTTTTCCAACTGAT+TGG | + | chr7_2:25552387-25552406 | Msa1054220:intron | 20.0% |
| !!! | TATTTTGTACTTTTTTACCA+TGG | + | chr7_2:25552648-25552667 | Msa1054220:intron | 20.0% |
| !!! | TACTATTTCTTCTTCAATTT+GGG | + | chr7_2:25552822-25552841 | Msa1054220:intron | 20.0% |
| !! | AATGGAATAATGAAATAGAA+TGG | - | chr7_2:25552939-25552958 | None:intergenic | 20.0% |
| !! | AGTATAAATACATTAACTTC+TGG | - | chr7_2:25553328-25553347 | None:intergenic | 20.0% |
| !!! | TTAAATCCCTTTTATTTCAA+TGG | - | chr7_2:25553360-25553379 | None:intergenic | 20.0% |
| !! | CACAATAATACCAATATAAT+TGG | - | chr7_2:25553421-25553440 | None:intergenic | 20.0% |
| !! | AATAGACCTATCTTATAATA+TGG | + | chr7_2:25553507-25553526 | Msa1054220:intron | 20.0% |
| !! | TTGTTTCCATATTATAAGAT+AGG | - | chr7_2:25553516-25553535 | None:intergenic | 20.0% |
| !! | ACAACCAAAATTAATTAACT+AGG | - | chr7_2:25553686-25553705 | None:intergenic | 20.0% |
| ! | TTGTTTGTAATAAGCAAACA+TGG | - | chr7_2:25549903-25549922 | None:intergenic | 25.0% |
| !!! | GTTTTGTTTTAGTTTTTGTG+TGG | + | chr7_2:25550280-25550299 | Msa1054220:intron | 25.0% |
| !!! | ATTGAATTTTTAGCCGTTTT+TGG | + | chr7_2:25550560-25550579 | Msa1054220:intron | 25.0% |
| !!! | TGTTAATGGATTCTGTTTTT+AGG | + | chr7_2:25551119-25551138 | Msa1054220:intron | 25.0% |
| ! | ATAAGATTCTTTGCTTTATC+TGG | + | chr7_2:25551307-25551326 | Msa1054220:intron | 25.0% |
| !!! | TGTCATAAGATTAGTTTTTC+GGG | + | chr7_2:25551352-25551371 | Msa1054220:intron | 25.0% |
| !! | GATTAGTAATGGAAACTATT+TGG | + | chr7_2:25551480-25551499 | Msa1054220:intron | 25.0% |
| ! | TAAGCATTTGAATATGAGTA+TGG | + | chr7_2:25551538-25551557 | Msa1054220:intron | 25.0% |
| ! | TTGAATATGAGTATGGAAAT+TGG | + | chr7_2:25551545-25551564 | Msa1054220:intron | 25.0% |
| ! | TACATTTCGCTATAAATAAG+TGG | + | chr7_2:25551767-25551786 | Msa1054220:intron | 25.0% |
| ! | ATTGTATTAAGATGGATGAA+TGG | + | chr7_2:25552127-25552146 | Msa1054220:intron | 25.0% |
| ! | TAGTTTCATTATCAAAATGC+TGG | + | chr7_2:25552210-25552229 | Msa1054220:intron | 25.0% |
| !!! | TCATCTTTTTGACTTTTTGT+TGG | + | chr7_2:25552308-25552327 | Msa1054220:intron | 25.0% |
| !!! | TTTTGACTTTTTGTTGGAAA+AGG | + | chr7_2:25552314-25552333 | Msa1054220:intron | 25.0% |
| ! | ATATCTGTATCATGATATTC+TGG | + | chr7_2:25552432-25552451 | Msa1054220:intron | 25.0% |
| !!! | GTTTTGTTAGTAACATTAAC+TGG | + | chr7_2:25552454-25552473 | Msa1054220:intron | 25.0% |
| ! | AGAGTTATTACATCATATGT+AGG | - | chr7_2:25552521-25552540 | None:intergenic | 25.0% |
| ! | AAAGGTAATACATTTAGAAG+AGG | - | chr7_2:25552550-25552569 | None:intergenic | 25.0% |
| ! | TATCAAATATAGGTCACTAA+AGG | - | chr7_2:25552568-25552587 | None:intergenic | 25.0% |
| !!! | TTGTCTGGTTCTTTATATTA+TGG | + | chr7_2:25552620-25552639 | Msa1054220:intron | 25.0% |
| ! | ATAATCCAAACATATGCTAA+GGG | - | chr7_2:25552703-25552722 | None:intergenic | 25.0% |
| ! | AATAATCCAAACATATGCTA+AGG | - | chr7_2:25552704-25552723 | None:intergenic | 25.0% |
| ! | TTAGCATATGTTTGGATTAT+TGG | + | chr7_2:25552703-25552722 | Msa1054220:intron | 25.0% |
| ! | ATATGTTTGGATTATTGGAA+AGG | + | chr7_2:25552708-25552727 | Msa1054220:intron | 25.0% |
| !! | CTACTATTTCTTCTTCAATT+TGG | + | chr7_2:25552821-25552840 | Msa1054220:intron | 25.0% |
| ! | AGACAAGAAAATTATACCAA+GGG | + | chr7_2:25553086-25553105 | Msa1054220:intron | 25.0% |
| ! | GATATTAAACTCATAAATGC+TGG | + | chr7_2:25553117-25553136 | Msa1054220:CDS | 25.0% |
| ! | AAAAGGGATTTAAATAAGGA+AGG | + | chr7_2:25553367-25553386 | Msa1054220:intron | 25.0% |
| !! | TTGGTATTATTGTGATTTTG+AGG | + | chr7_2:25553427-25553446 | Msa1054220:intron | 25.0% |
| !! | TGGTATTATTGTGATTTTGA+GGG | + | chr7_2:25553428-25553447 | Msa1054220:intron | 25.0% |
| ! | TATAATATGGAAACAACTGT+TGG | + | chr7_2:25553520-25553539 | Msa1054220:intron | 25.0% |
| ! | CTCATTTATAAGCTGTTATT+TGG | - | chr7_2:25553662-25553681 | None:intergenic | 25.0% |
| ! | CAAATAACAGCTTATAAATG+AGG | + | chr7_2:25553660-25553679 | Msa1054220:intron | 25.0% |
| !! | TAGTTACTCCTTTTAATCTT+AGG | + | chr7_2:25553732-25553751 | Msa1054220:intron | 25.0% |
| !! | AGTTACTCCTTTTAATCTTA+GGG | + | chr7_2:25553733-25553752 | Msa1054220:intron | 25.0% |
| ! | TTCCCCTAAAATAGATAATA+TGG | - | chr7_2:25553759-25553778 | None:intergenic | 25.0% |
| TTTGTAATAAGCAAACATGG+TGG | - | chr7_2:25549900-25549919 | None:intergenic | 30.0% | |
| TATCTGATCCATCGTATATA+CGG | - | chr7_2:25550091-25550110 | None:intergenic | 30.0% | |
| ATATACGATGGATCAGATAT+TGG | + | chr7_2:25550092-25550111 | Msa1054220:CDS | 30.0% | |
| !! | GAAGTTGGTGAATAAGAAAA+GGG | - | chr7_2:25550119-25550138 | None:intergenic | 30.0% |
| !! | TGAAGTTGGTGAATAAGAAA+AGG | - | chr7_2:25550120-25550139 | None:intergenic | 30.0% |
| !!! | TTGTTTTAGTTTTTGTGTGG+TGG | + | chr7_2:25550283-25550302 | Msa1054220:intron | 30.0% |
| !!! | TGTTTTAGTTTTTGTGTGGT+GGG | + | chr7_2:25550284-25550303 | Msa1054220:intron | 30.0% |
| CCACTTTCTCAAATTACTAT+TGG | - | chr7_2:25550677-25550696 | None:intergenic | 30.0% | |
| CCAATAGTAATTTGAGAAAG+TGG | + | chr7_2:25550674-25550693 | Msa1054220:intron | 30.0% | |
| ACTGTTTGCATAAACTATCT+TGG | + | chr7_2:25550911-25550930 | Msa1054220:intron | 30.0% | |
| !!! | TGGATTCTGTTTTTAGGAAA+AGG | + | chr7_2:25551125-25551144 | Msa1054220:intron | 30.0% |
| TTCAATTGGGTAGTTGAATT+AGG | + | chr7_2:25551277-25551296 | Msa1054220:intron | 30.0% | |
| !!! | ATAAGATTAGTTTTTCGGGT+TGG | + | chr7_2:25551356-25551375 | Msa1054220:intron | 30.0% |
| TTTATCGGTATTTCCTGAAA+CGG | - | chr7_2:25551445-25551464 | None:intergenic | 30.0% | |
| ! | AGTAATGGAAACTATTTGGT+AGG | + | chr7_2:25551484-25551503 | Msa1054220:intron | 30.0% |
| TACATTACCTGGATTTCTAT+TGG | + | chr7_2:25551718-25551737 | Msa1054220:intron | 30.0% | |
| TTATCAACCAATAGAAATCC+AGG | - | chr7_2:25551728-25551747 | None:intergenic | 30.0% | |
| !! | GGATTTCTATTGGTTGATAA+AGG | + | chr7_2:25551728-25551747 | Msa1054220:intron | 30.0% |
| ! | AATAAGTGGTTAGATTTGGT+TGG | + | chr7_2:25551781-25551800 | Msa1054220:intron | 30.0% |
| ! | GGTAATGCAATTGACTATTT+TGG | + | chr7_2:25551887-25551906 | Msa1054220:intron | 30.0% |
| AAAAATCCGCTACATAAACA+TGG | - | chr7_2:25552079-25552098 | None:intergenic | 30.0% | |
| CATCTTAATACAATTACCAG+TGG | - | chr7_2:25552121-25552140 | None:intergenic | 30.0% | |
| CACTGGTAATTGTATTAAGA+TGG | + | chr7_2:25552119-25552138 | Msa1054220:intron | 30.0% | |
| AGTCAAAAAGATGAGATTTC+TGG | - | chr7_2:25552302-25552321 | None:intergenic | 30.0% | |
| TCTGAAAGAGAGTTTAGTAA+CGG | - | chr7_2:25552487-25552506 | None:intergenic | 30.0% | |
| !! | GGGAGTATTCTATCAAATAT+AGG | - | chr7_2:25552578-25552597 | None:intergenic | 30.0% |
| ! | TTTTTCCCTTAGCATATGTT+TGG | + | chr7_2:25552695-25552714 | Msa1054220:intron | 30.0% |
| AAGAAATAGTAGAAAGTGAG+TGG | - | chr7_2:25552813-25552832 | None:intergenic | 30.0% | |
| TATTTCTTCTTCAATTTGGG+TGG | + | chr7_2:25552825-25552844 | Msa1054220:intron | 30.0% | |
| ATGAGTGGAGCATAATATAA+TGG | - | chr7_2:25552957-25552976 | None:intergenic | 30.0% | |
| AGAATATAGCACTAAAGCAA+CGG | - | chr7_2:25553003-25553022 | None:intergenic | 30.0% | |
| AGAAAACCGCTAAGAAATAA+GGG | - | chr7_2:25553029-25553048 | None:intergenic | 30.0% | |
| AAGAAAACCGCTAAGAAATA+AGG | - | chr7_2:25553030-25553049 | None:intergenic | 30.0% | |
| CAGACAAGAAAATTATACCA+AGG | + | chr7_2:25553085-25553104 | Msa1054220:intron | 30.0% | |
| ! | CATAAATGCTGGCAAAATTT+TGG | + | chr7_2:25553128-25553147 | Msa1054220:CDS | 30.0% |
| !! | AATTTTGGAGAACAACAAGA+CGG | + | chr7_2:25553143-25553162 | Msa1054220:CDS | 30.0% |
| TATGCCACCATTGAAATAAA+AGG | + | chr7_2:25553350-25553369 | Msa1054220:intron | 30.0% | |
| ATGCCACCATTGAAATAAAA+GGG | + | chr7_2:25553351-25553370 | Msa1054220:intron | 30.0% | |
| !! | AATCCCTTTTATTTCAATGG+TGG | - | chr7_2:25553357-25553376 | None:intergenic | 30.0% |
| CATGATAATTGACACAATCA+TGG | - | chr7_2:25553481-25553500 | None:intergenic | 30.0% | |
| ! | GAGGCCTAGTTAATTAATTT+TGG | + | chr7_2:25553679-25553698 | Msa1054220:intron | 30.0% |
| AATATGGCCCTAAGATTAAA+AGG | - | chr7_2:25553743-25553762 | None:intergenic | 30.0% | |
| ! | AGGGCCATATTATCTATTTT+AGG | + | chr7_2:25553752-25553771 | Msa1054220:intron | 30.0% |
| ! | GGGCCATATTATCTATTTTA+GGG | + | chr7_2:25553753-25553772 | Msa1054220:intron | 30.0% |
| !! | GGCCATATTATCTATTTTAG+GGG | + | chr7_2:25553754-25553773 | Msa1054220:intron | 30.0% |
| AAGTTTGAACAGTTTCCAAA+CGG | - | chr7_2:25553867-25553886 | None:intergenic | 30.0% | |
| TAACATCTACAAAAACCTTG+TGG | + | chr7_2:25553903-25553922 | Msa1054220:intron | 30.0% | |
| AAAAATCCTTTCCTTGAGCA+TGG | - | chr7_2:25550150-25550169 | None:intergenic | 35.0% | |
| ! | AGGAAAGGATTTTTGCTGAA+TGG | + | chr7_2:25550156-25550175 | Msa1054220:CDS | 35.0% |
| GCACATAAACTTCTGATTGA+AGG | + | chr7_2:25550394-25550413 | Msa1054220:intron | 35.0% | |
| !!! | TTTTAGCCGTTTTTGGTTGT+TGG | + | chr7_2:25550567-25550586 | Msa1054220:intron | 35.0% |
| !!! | TTTAGCCGTTTTTGGTTGTT+GGG | + | chr7_2:25550568-25550587 | Msa1054220:intron | 35.0% |
| ATTTGCCCAACAACCAAAAA+CGG | - | chr7_2:25550576-25550595 | None:intergenic | 35.0% | |
| GCTTATTTGAACCTATCTAC+CGG | - | chr7_2:25551027-25551046 | None:intergenic | 35.0% | |
| TTATGTTTGATGCTCTTTCG+TGG | + | chr7_2:25551093-25551112 | Msa1054220:intron | 35.0% | |
| !!! | TTTGGTTTTTGAACCGTTTC+AGG | + | chr7_2:25551429-25551448 | Msa1054220:intron | 35.0% |
| TTTATCCAGAAAAGGTTCAG+TGG | + | chr7_2:25551508-25551527 | Msa1054220:intron | 35.0% | |
| TGACATGTCAATACATTACC+TGG | + | chr7_2:25551707-25551726 | Msa1054220:intron | 35.0% | |
| TGGTTGGCAAATGGTTATAA+AGG | + | chr7_2:25551797-25551816 | Msa1054220:intron | 35.0% | |
| TCACTTTCTTGTGGTTGTTA+TGG | + | chr7_2:25551866-25551885 | Msa1054220:intron | 35.0% | |
| AAATTGCCTCCATAGCATTA+TGG | + | chr7_2:25551985-25552004 | Msa1054220:intron | 35.0% | |
| GCGGATAAAATAGTTGTTGT+TGG | - | chr7_2:25552031-25552050 | None:intergenic | 35.0% | |
| GCAATACCATGTTTATGTAG+CGG | + | chr7_2:25552070-25552089 | Msa1054220:intron | 35.0% | |
| CTTAATACAATTACCAGTGG+CGG | - | chr7_2:25552118-25552137 | None:intergenic | 35.0% | |
| CTATCGAAATCTTCTCTCTA+AGG | - | chr7_2:25552193-25552212 | None:intergenic | 35.0% | |
| GCTACTTGCAATTATGTTTC+AGG | + | chr7_2:25552409-25552428 | Msa1054220:intron | 35.0% | |
| TATGCTAAGGGAAAAATCAC+AGG | - | chr7_2:25552691-25552710 | None:intergenic | 35.0% | |
| TAGTAGAAAGTGAGTGGAAT+AGG | - | chr7_2:25552807-25552826 | None:intergenic | 35.0% | |
| ! | CGAGTCTTTTTCTCAAACAA+TGG | + | chr7_2:25552859-25552878 | Msa1054220:intron | 35.0% |
| TCGAACGAAATGAAATGAGA+GGG | - | chr7_2:25552900-25552919 | None:intergenic | 35.0% | |
| ATCGAACGAAATGAAATGAG+AGG | - | chr7_2:25552901-25552920 | None:intergenic | 35.0% | |
| ! | TCTTGTCCCTTATTTCTTAG+CGG | + | chr7_2:25553020-25553039 | Msa1054220:intron | 35.0% |
| AGGGATTTAAATAAGGAAGG+AGG | + | chr7_2:25553370-25553389 | Msa1054220:intron | 35.0% | |
| TGACATTTGTGTAAACCACA+GGG | - | chr7_2:25553796-25553815 | None:intergenic | 35.0% | |
| CTGAAGTTCCGTATATACGA+TGG | + | chr7_2:25550080-25550099 | Msa1054220:CDS | 40.0% | |
| AGCATGGAAACAGTTGAAGT+TGG | - | chr7_2:25550134-25550153 | None:intergenic | 40.0% | |
| TTCAACTGTTTCCATGCTCA+AGG | + | chr7_2:25550136-25550155 | Msa1054220:CDS | 40.0% | |
| ! | ATTTTTGCTGAATGGCCCAA+AGG | + | chr7_2:25550164-25550183 | Msa1054220:CDS | 40.0% |
| AACTCAAACCCTATGAAGCA+AGG | - | chr7_2:25550531-25550550 | None:intergenic | 40.0% | |
| ! | TATTGGTGTCTGACACATGT+CGG | - | chr7_2:25550660-25550679 | None:intergenic | 40.0% |
| ! | AAGTGTCAGTGCTATTGACA+TGG | + | chr7_2:25550783-25550802 | Msa1054220:intron | 40.0% |
| !! | GCTATTGACATGGCTTTGTT+TGG | + | chr7_2:25550793-25550812 | Msa1054220:intron | 40.0% |
| ! | TGGTAGGCTTTATCCAGAAA+AGG | + | chr7_2:25551500-25551519 | Msa1054220:intron | 40.0% |
| ! | GGTTAGATTTGGTTGGCAAA+TGG | + | chr7_2:25551788-25551807 | Msa1054220:intron | 40.0% |
| TGGTTATAAAGGTCACTGAG+AGG | + | chr7_2:25551808-25551827 | Msa1054220:intron | 40.0% | |
| GCTATGTCATCACTTTCTTG+TGG | + | chr7_2:25551857-25551876 | Msa1054220:intron | 40.0% | |
| TTCACCATGCCATAATGCTA+TGG | - | chr7_2:25551997-25552016 | None:intergenic | 40.0% | |
| AAACATGGTATTGCAGCCTA+TGG | - | chr7_2:25552064-25552083 | None:intergenic | 40.0% | |
| TAGGCATTTAGAAGACCTGT+AGG | + | chr7_2:25552255-25552274 | Msa1054220:intron | 40.0% | |
| AGGCATTTAGAAGACCTGTA+GGG | + | chr7_2:25552256-25552275 | Msa1054220:intron | 40.0% | |
| ATTGCAAGTAGCCAATCAGT+TGG | - | chr7_2:25552401-25552420 | None:intergenic | 40.0% | |
| TTGTAGACGGCAACATCAAA+GGG | - | chr7_2:25552598-25552617 | None:intergenic | 40.0% | |
| !!! | TTTTTTACCATGGACGCATG+TGG | + | chr7_2:25552658-25552677 | Msa1054220:intron | 40.0% |
| TCTTCTTCAATTTGGGTGGA+TGG | + | chr7_2:25552829-25552848 | Msa1054220:intron | 40.0% | |
| TTCAATTTGGGTGGATGGTA+TGG | + | chr7_2:25552834-25552853 | Msa1054220:intron | 40.0% | |
| GATGGATATTAAGCGATGAG+TGG | - | chr7_2:25552972-25552991 | None:intergenic | 40.0% | |
| AAAGCAACGGTAGTTAAGGA+TGG | - | chr7_2:25552990-25553009 | None:intergenic | 40.0% | |
| CACTAAAGCAACGGTAGTTA+AGG | - | chr7_2:25552994-25553013 | None:intergenic | 40.0% | |
| ! | TTAATATCACTTGCTGCCCT+TGG | - | chr7_2:25553105-25553124 | None:intergenic | 40.0% |
| !! | CACCAAAAGGTACTCTACAT+TGG | - | chr7_2:25553173-25553192 | None:intergenic | 40.0% |
| !! | GTTTTCGCTTTTGCCAAAGA+TGG | - | chr7_2:25553237-25553256 | None:intergenic | 40.0% |
| TCTTTGGCAAAAGCGAAAAC+AGG | + | chr7_2:25553237-25553256 | Msa1054220:CDS | 40.0% | |
| GACATTTGTGTAAACCACAG+GGG | - | chr7_2:25553795-25553814 | None:intergenic | 40.0% | |
| CTGACATTTGTGTAAACCAC+AGG | - | chr7_2:25553797-25553816 | None:intergenic | 40.0% | |
| TACAAAACGTTCAAGCCACA+AGG | - | chr7_2:25553921-25553940 | None:intergenic | 40.0% | |
| ! | TTGTGGCTTGAACGTTTTGT+AGG | + | chr7_2:25553920-25553939 | Msa1054220:intron | 40.0% |
| ! | CGAGATGCCTGATGATGAAT+TGG | + | chr7_2:25550052-25550071 | Msa1054220:exon | 45.0% |
| ! | GATGCCTGATGATGAATTGG+TGG | + | chr7_2:25550055-25550074 | Msa1054220:exon | 45.0% |
| AGCTCCACCAATTCATCATC+AGG | - | chr7_2:25550062-25550081 | None:intergenic | 45.0% | |
| CTGTTTCCATGCTCAAGGAA+AGG | + | chr7_2:25550141-25550160 | Msa1054220:CDS | 45.0% | |
| TACATGTGTCTGTGTCGTGA+TGG | - | chr7_2:25550436-25550455 | None:intergenic | 45.0% | |
| ATGAAGCAAGGACACAGACA+CGG | - | chr7_2:25550519-25550538 | None:intergenic | 45.0% | |
| TGTCTGTGTCCTTGCTTCAT+AGG | + | chr7_2:25550519-25550538 | Msa1054220:intron | 45.0% | |
| GTCTGTGTCCTTGCTTCATA+GGG | + | chr7_2:25550520-25550539 | Msa1054220:intron | 45.0% | |
| GCTATGTAGCACTAACATGC+AGG | + | chr7_2:25550597-25550616 | Msa1054220:intron | 45.0% | |
| AGTTTCCCAAGTGCTTATGC+CGG | + | chr7_2:25551005-25551024 | Msa1054220:intron | 45.0% | |
| ATCTACCGGCATAAGCACTT+GGG | - | chr7_2:25551013-25551032 | None:intergenic | 45.0% | |
| TATCTACCGGCATAAGCACT+TGG | - | chr7_2:25551014-25551033 | None:intergenic | 45.0% | |
| AAGTGCTTATGCCGGTAGAT+AGG | + | chr7_2:25551013-25551032 | Msa1054220:intron | 45.0% | |
| ! | TCTATGCCTAAGGGCTTGTT+TGG | - | chr7_2:25551054-25551073 | None:intergenic | 45.0% |
| AACAAGCCCTTAGGCATAGA+AGG | + | chr7_2:25551054-25551073 | Msa1054220:intron | 45.0% | |
| ACAAGCCCTTAGGCATAGAA+GGG | + | chr7_2:25551055-25551074 | Msa1054220:intron | 45.0% | |
| GAAACCCCTTCTATGCCTAA+GGG | - | chr7_2:25551063-25551082 | None:intergenic | 45.0% | |
| AGAAACCCCTTCTATGCCTA+AGG | - | chr7_2:25551064-25551083 | None:intergenic | 45.0% | |
| TGTTTGATGCTCTTTCGTGG+AGG | + | chr7_2:25551096-25551115 | Msa1054220:intron | 45.0% | |
| !! | CTCTTTCGTGGAGGTGTTAA+TGG | + | chr7_2:25551105-25551124 | Msa1054220:intron | 45.0% |
| ! | GATCACCACTGAACCTTTTC+TGG | - | chr7_2:25551516-25551535 | None:intergenic | 45.0% |
| ACCATGCCATAATGCTATGG+AGG | - | chr7_2:25551994-25552013 | None:intergenic | 45.0% | |
| !! | CAATTACCAGTGGCGGATTA+TGG | - | chr7_2:25552111-25552130 | None:intergenic | 45.0% |
| GGCATTTAGAAGACCTGTAG+GGG | + | chr7_2:25552257-25552276 | Msa1054220:intron | 45.0% | |
| ACACTGCATCCGAGTTAAAC+AGG | + | chr7_2:25552364-25552383 | Msa1054220:intron | 45.0% | |
| CTTGTAGACGGCAACATCAA+AGG | - | chr7_2:25552599-25552618 | None:intergenic | 45.0% | |
| CTTTGATGTTGCCGTCTACA+AGG | + | chr7_2:25552597-25552616 | Msa1054220:intron | 45.0% | |
| GAACCAGACAACCTTGTAGA+CGG | - | chr7_2:25552611-25552630 | None:intergenic | 45.0% | |
| TTTGGAGAACAACAAGACGG+TGG | + | chr7_2:25553146-25553165 | Msa1054220:CDS | 45.0% | |
| TTGGAGAACAACAAGACGGT+GGG | + | chr7_2:25553147-25553166 | Msa1054220:CDS | 45.0% | |
| !! | GGCCAATGTAGAGTACCTTT+TGG | + | chr7_2:25553168-25553187 | Msa1054220:CDS | 45.0% |
| ! | CTTTTGGTGAGCTTCCTTCT+GGG | + | chr7_2:25553184-25553203 | Msa1054220:CDS | 45.0% |
| ! | TTTTGGTGAGCTTCCTTCTG+GGG | + | chr7_2:25553185-25553204 | Msa1054220:CDS | 45.0% |
| TGTTGTCGTTCAGCCATCTT+TGG | + | chr7_2:25553221-25553240 | Msa1054220:CDS | 45.0% | |
| ATTTGTGTAAACCACAGGGG+AGG | - | chr7_2:25553792-25553811 | None:intergenic | 45.0% | |
| GTATGTGCTTGGGAATAGAG+GGG | - | chr7_2:25553826-25553845 | None:intergenic | 45.0% | |
| GGTATGTGCTTGGGAATAGA+GGG | - | chr7_2:25553827-25553846 | None:intergenic | 45.0% | |
| AGGTATGTGCTTGGGAATAG+AGG | - | chr7_2:25553828-25553847 | None:intergenic | 45.0% | |
| AACATGCAGGTGCAAACACC+TGG | + | chr7_2:25550610-25550629 | Msa1054220:intron | 50.0% | |
| AGGTGCAAACACCTGGACAT+TGG | + | chr7_2:25550617-25550636 | Msa1054220:intron | 50.0% | |
| ACACATCGTGTCCAATGTCC+AGG | - | chr7_2:25550631-25550650 | None:intergenic | 50.0% | |
| GCCAATCCAAACAAGCCCTT+AGG | + | chr7_2:25551045-25551064 | Msa1054220:intron | 50.0% | |
| ! | GCCTAAGGGCTTGTTTGGAT+TGG | - | chr7_2:25551049-25551068 | None:intergenic | 50.0% |
| CAAGCCCTTAGGCATAGAAG+GGG | + | chr7_2:25551056-25551075 | Msa1054220:intron | 50.0% | |
| GCCTCCATAGCATTATGGCA+TGG | + | chr7_2:25551990-25552009 | Msa1054220:intron | 50.0% | |
| ATCCGCCATGTTTCCACCAT+AGG | + | chr7_2:25552045-25552064 | Msa1054220:intron | 50.0% | |
| ! | AGCCTATGGTGGAAACATGG+CGG | - | chr7_2:25552050-25552069 | None:intergenic | 50.0% |
| ! | TGCAGCCTATGGTGGAAACA+TGG | - | chr7_2:25552053-25552072 | None:intergenic | 50.0% |
| CATGGTATTGCAGCCTATGG+TGG | - | chr7_2:25552061-25552080 | None:intergenic | 50.0% | |
| ! | AGTCTCGTCTAAGGTGGTCT+AGG | + | chr7_2:25552236-25552255 | Msa1054220:intron | 50.0% |
| GTACTAACTAGTGCCCCTAC+AGG | - | chr7_2:25552273-25552292 | None:intergenic | 50.0% | |
| TTGCCGTCTACAAGGTTGTC+TGG | + | chr7_2:25552605-25552624 | Msa1054220:intron | 50.0% | |
| CCAGAAGGAAGCTCACCAAA+AGG | - | chr7_2:25553186-25553205 | None:intergenic | 50.0% | |
| ! | CCTTTTGGTGAGCTTCCTTC+TGG | + | chr7_2:25553183-25553202 | Msa1054220:CDS | 50.0% |
| TGGCTGAACGACAACATGCA+TGG | - | chr7_2:25553217-25553236 | None:intergenic | 50.0% | |
| ! | TGTAGGGGAGGTATGTGCTT+GGG | - | chr7_2:25553836-25553855 | None:intergenic | 50.0% |
| CAAACGGTGCAAGACTGTAG+GGG | - | chr7_2:25553851-25553870 | None:intergenic | 50.0% | |
| CCAAACGGTGCAAGACTGTA+GGG | - | chr7_2:25553852-25553871 | None:intergenic | 50.0% | |
| TCCAAACGGTGCAAGACTGT+AGG | - | chr7_2:25553853-25553872 | None:intergenic | 50.0% | |
| AAGGACACAGACACGGACAC+TGG | - | chr7_2:25550512-25550531 | None:intergenic | 55.0% | |
| TTGCTGCCATAATCCGCCAC+TGG | + | chr7_2:25552102-25552121 | Msa1054220:intron | 55.0% | |
| ! | TGCTGGCTGAGTCTCGTCTA+AGG | + | chr7_2:25552227-25552246 | Msa1054220:intron | 55.0% |
| TGGCTGAGTCTCGTCTAAGG+TGG | + | chr7_2:25552230-25552249 | Msa1054220:intron | 55.0% | |
| ! | TGCATGGTGATGACCCCAGA+AGG | - | chr7_2:25553201-25553220 | None:intergenic | 55.0% |
| AATTACACGCACCTCCCCTG+TGG | + | chr7_2:25553778-25553797 | Msa1054220:intron | 55.0% | |
| ! | CTGTAGGGGAGGTATGTGCT+TGG | - | chr7_2:25553837-25553856 | None:intergenic | 55.0% |
| CCCTACAGTCTTGCACCGTT+TGG | + | chr7_2:25553849-25553868 | Msa1054220:intron | 55.0% | |
| CATCCCTGCAGCGATTGAGA+CGG | + | chr7_2:25553947-25553966 | Msa1054220:intron | 55.0% | |
| TTGCCGTCTCAATCGCTGCA+GGG | - | chr7_2:25553953-25553972 | None:intergenic | 55.0% | |
| TTTGCCGTCTCAATCGCTGC+AGG | - | chr7_2:25553954-25553973 | None:intergenic | 55.0% | |
| AGCTCTGCCACATGCGTCCA+TGG | - | chr7_2:25552668-25552687 | None:intergenic | 60.0% | |
| ACGGTGCAAGACTGTAGGGG+AGG | - | chr7_2:25553848-25553867 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 25549760 | 25554044 | 25549760 | ID=Msa1054220;Name=Msa1054220 |
| chr7_2 | mRNA | 25549760 | 25554044 | 25549760 | ID=Msa1054220-mRNA-1;Parent=Msa1054220;Name=Msa1054220-mRNA-1;_AED=0.25;_eAED=0.25;_QI=296|0.33|0.5|0.5|1|1|4|0|113 |
| chr7_2 | exon | 25549760 | 25550185 | 25549760 | ID=Msa1054220-mRNA-1:exon:5512;Parent=Msa1054220-mRNA-1 |
| chr7_2 | exon | 25553088 | 25553258 | 25553088 | ID=Msa1054220-mRNA-1:exon:5513;Parent=Msa1054220-mRNA-1 |
| chr7_2 | exon | 25553329 | 25553336 | 25553329 | ID=Msa1054220-mRNA-1:exon:5514;Parent=Msa1054220-mRNA-1 |
| chr7_2 | exon | 25554012 | 25554044 | 25554012 | ID=Msa1054220-mRNA-1:exon:5515;Parent=Msa1054220-mRNA-1 |
| chr7_2 | five_prime_UTR | 25549760 | 25550055 | 25549760 | ID=Msa1054220-mRNA-1:five_prime_utr;Parent=Msa1054220-mRNA-1 |
| chr7_2 | CDS | 25550056 | 25550185 | 25550056 | ID=Msa1054220-mRNA-1:cds;Parent=Msa1054220-mRNA-1 |
| chr7_2 | CDS | 25553088 | 25553258 | 25553088 | ID=Msa1054220-mRNA-1:cds;Parent=Msa1054220-mRNA-1 |
| chr7_2 | CDS | 25553329 | 25553336 | 25553329 | ID=Msa1054220-mRNA-1:cds;Parent=Msa1054220-mRNA-1 |
| chr7_2 | CDS | 25554012 | 25554044 | 25554012 | ID=Msa1054220-mRNA-1:cds;Parent=Msa1054220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
