AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1062200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1062200 MtrunA17_Chr7g0237921 92.068 353 23 2 1 353 1 348 0.0 552
Msa1062200 MtrunA17_Chr4g0010151 48.303 383 125 16 1 340 1 353 1.97e-88 270
Msa1062200 MtrunA17_Chr4g0031411 43.266 349 160 12 1 329 1 331 6.49e-72 227
Msa1062200 MtrunA17_Chr7g0223311 55.479 146 57 4 1 142 1 142 1.14e-44 157
Msa1062200 MtrunA17_Chr2g0328021 40.076 262 118 11 1 260 1 225 2.49e-44 154
Msa1062200 MtrunA17_Chr8g0374251 68.421 76 23 1 77 152 69 143 1.53e-31 121
Msa1062200 MtrunA17_Chr3g0126201 63.750 80 29 0 57 136 32 111 1.08e-30 119
Msa1062200 MtrunA17_Chr3g0127201 66.667 75 21 1 57 131 12 82 4.60e-30 116
Msa1062200 MtrunA17_Chr5g0411951 59.633 109 39 1 73 181 40 143 1.06e-29 116
Msa1062200 MtrunA17_Chr3g0117601 63.636 88 25 3 43 126 27 111 1.21e-29 116
Msa1062200 MtrunA17_Chr2g0326001 78.689 61 13 0 70 130 34 94 1.37e-29 115
Msa1062200 MtrunA17_Chr8g0367161 73.438 64 17 0 72 135 28 91 2.08e-29 115
Msa1062200 MtrunA17_Chr8g0374111 60.377 106 25 4 55 152 17 113 2.09e-29 113
Msa1062200 MtrunA17_Chr4g0030051 81.356 59 11 0 70 128 35 93 3.41e-29 114
Msa1062200 MtrunA17_Chr2g0282441 67.606 71 22 1 58 127 6 76 1.38e-28 113
Msa1062200 MtrunA17_Chr4g0061761 90.000 50 5 0 77 126 41 90 4.42e-28 111
Msa1062200 MtrunA17_Chr8g0341671 73.913 69 15 2 68 136 13 78 4.99e-28 108
Msa1062200 MtrunA17_Chr8g0346551 71.014 69 16 1 78 142 26 94 5.94e-28 110
Msa1062200 MtrunA17_Chr1g0177251 80.357 56 11 0 75 130 11 66 6.12e-28 110
Msa1062200 MtrunA17_Chr2g0282511 89.583 48 5 0 77 124 46 93 9.62e-27 107
Msa1062200 MtrunA17_Chr2g0282051 65.278 72 16 2 69 132 31 101 1.61e-26 106
Msa1062200 MtrunA17_Chr1g0188851 52.439 82 37 1 53 132 18 99 4.30e-26 105
Msa1062200 MtrunA17_Chr4g0047761 81.818 55 9 1 78 132 74 127 4.79e-26 106
Msa1062200 MtrunA17_Chr2g0308011 87.500 48 6 0 77 124 38 85 9.28e-26 102
Msa1062200 MtrunA17_Chr6g0453321 71.429 56 16 0 78 133 138 193 2.69e-23 100
Msa1062200 MtrunA17_Chr3g0092111 68.421 57 18 0 78 134 138 194 4.45e-23 99.8
Msa1062200 MtrunA17_Chr7g0217581 61.194 67 26 0 78 144 234 300 6.40e-23 100
Msa1062200 MtrunA17_Chr8g0355261 68.519 54 17 0 78 131 120 173 7.17e-23 99.0
Msa1062200 MtrunA17_Chr2g0283811 53.247 77 33 1 78 154 49 122 7.90e-23 93.6
Msa1062200 MtrunA17_Chr7g0254161 42.105 114 55 1 77 179 102 215 9.22e-23 98.6
Msa1062200 MtrunA17_Chr6g0460721 66.667 54 18 0 77 130 90 143 4.39e-22 95.5
Msa1062200 MtrunA17_Chr4g0042481 69.231 52 16 0 78 129 124 175 4.73e-22 96.7
Msa1062200 MtrunA17_Chr5g0417561 58.667 75 25 1 78 152 121 189 1.65e-21 94.4
Msa1062200 MtrunA17_Chr5g0417571 61.290 62 24 0 78 139 140 201 1.99e-21 93.6
Msa1062200 MtrunA17_Chr5g0417551 66.102 59 20 0 78 136 129 187 7.33e-21 92.4
Msa1062200 MtrunA17_Chr6g0460731 57.377 61 24 1 71 129 89 149 9.34e-21 92.0
Msa1062200 MtrunA17_Chr5g0417601 69.231 52 16 0 78 129 142 193 1.35e-20 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1062200 AT3G55370.2 38.320 381 156 18 1 338 1 345 1.54e-52 177
Msa1062200 AT3G55370.1 38.736 364 147 17 1 338 1 314 1.76e-51 174
Msa1062200 AT3G55370.3 40.645 310 123 14 48 338 92 359 1.35e-46 162
Msa1062200 AT2G37590.1 40.217 276 108 9 1 240 1 255 2.82e-45 158
Msa1062200 AT5G02460.1 86.842 76 10 0 55 130 74 149 7.86e-44 156
Msa1062200 AT1G07640.1 73.418 79 21 0 58 136 3 81 1.00e-36 134
Msa1062200 AT1G07640.2 73.418 79 21 0 58 136 59 137 1.49e-36 135
Msa1062200 AT1G07640.3 73.418 79 21 0 58 136 67 145 1.93e-36 135
Msa1062200 AT2G28810.1 46.711 152 49 6 1 127 1 145 2.12e-34 129
Msa1062200 AT5G60200.1 69.880 83 22 1 73 152 52 134 4.21e-34 126
Msa1062200 AT5G60850.1 61.957 92 32 1 63 154 38 126 2.62e-32 123
Msa1062200 AT2G28810.2 74.648 71 17 1 58 127 58 128 3.44e-32 123
Msa1062200 AT3G52440.1 72.464 69 19 0 73 141 22 90 4.25e-31 118
Msa1062200 AT3G52440.2 72.464 69 19 0 73 141 41 109 6.67e-31 118
Msa1062200 AT3G45610.1 68.571 70 22 0 73 142 37 106 1.28e-30 117
Msa1062200 AT1G51700.1 67.500 80 24 2 69 147 27 105 5.10e-30 114
Msa1062200 AT5G65590.1 54.639 97 37 2 35 131 7 96 6.31e-30 117
Msa1062200 AT3G21270.1 48.905 137 57 3 77 213 30 153 2.03e-29 112
Msa1062200 AT1G28310.1 83.929 56 9 0 77 132 28 83 2.98e-29 115
Msa1062200 AT1G28310.2 83.929 56 9 0 77 132 52 107 4.71e-29 115
Msa1062200 AT1G21340.1 61.176 85 31 1 78 162 40 122 6.68e-29 112
Msa1062200 AT4G21050.1 39.881 168 73 4 74 213 22 189 2.55e-28 110
Msa1062200 AT5G62940.1 48.438 128 59 4 1 126 1 123 2.97e-28 113
Msa1062200 AT4G38000.1 62.651 83 29 1 70 152 35 115 7.35e-28 109
Msa1062200 AT5G66940.1 51.351 111 42 4 37 145 2 102 9.03e-28 108
Msa1062200 AT3G50410.1 57.471 87 34 2 50 133 2 88 1.10e-27 109
Msa1062200 AT3G61850.1 54.455 101 41 3 38 133 31 131 1.40e-27 110
Msa1062200 AT3G61850.2 54.455 101 41 3 38 133 19 119 1.40e-27 110
Msa1062200 AT3G61850.3 54.455 101 41 3 38 133 19 119 1.40e-27 110
Msa1062200 AT3G61850.5 54.455 101 41 3 38 133 19 119 1.98e-27 110
Msa1062200 AT3G61850.4 54.455 101 41 3 38 133 31 131 2.21e-27 110
Msa1062200 AT4G24060.1 72.131 61 17 0 70 130 47 107 2.49e-27 110
Msa1062200 AT2G28510.1 39.431 246 104 10 75 320 47 247 4.31e-26 105
Msa1062200 AT4G00940.1 74.576 59 14 1 72 130 65 122 5.78e-26 105
Msa1062200 AT4G00940.3 74.576 59 14 1 72 130 65 122 5.78e-26 105
Msa1062200 AT4G00940.2 74.576 59 14 1 72 130 65 122 5.78e-26 105
Msa1062200 AT1G64620.1 47.682 151 58 5 70 213 43 179 3.55e-24 102
Msa1062200 AT2G46590.1 77.358 53 10 1 73 123 63 115 9.52e-24 100
Msa1062200 AT2G46590.2 77.358 53 10 1 73 123 75 127 1.10e-23 100
Msa1062200 AT5G62430.1 73.077 52 14 0 78 129 56 107 1.64e-23 99.4
Msa1062200 AT3G47500.1 63.636 66 24 0 78 143 112 177 2.80e-23 100
Msa1062200 AT1G47655.1 78.723 47 10 0 78 124 31 77 1.53e-22 94.4
Msa1062200 AT1G26790.1 69.231 52 16 0 78 129 113 164 2.97e-22 97.1
Msa1062200 AT2G34140.1 71.154 52 15 0 78 129 60 111 3.23e-22 92.4
Msa1062200 AT1G29160.1 71.154 52 15 0 78 129 64 115 3.37e-22 92.4
Msa1062200 AT4G21040.1 72.727 55 14 1 78 132 27 80 5.25e-22 93.6
Msa1062200 AT5G39660.3 71.154 52 15 0 78 129 140 191 9.85e-22 96.3
Msa1062200 AT5G39660.1 71.154 52 15 0 78 129 140 191 9.85e-22 96.3
Msa1062200 AT5G39660.2 71.154 52 15 0 78 129 140 191 9.85e-22 96.3
Msa1062200 AT1G69570.1 69.231 52 16 0 78 129 134 185 2.66e-21 94.4
Msa1062200 AT4G21080.1 53.165 79 33 1 78 156 27 101 3.90e-21 91.7
Msa1062200 AT4G21030.1 42.667 75 43 0 74 148 19 93 1.15e-13 69.3

Find 133 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTCTCTCCCACCATATA+TGG 0.222301 7_2:+52828000 Msa1062200:CDS
CTCCAACCGGGACACTTCTA+AGG 0.229004 7_2:-52828501 None:intergenic
TTCCAATATTGTTCACTATT+AGG 0.263046 7_2:-52829096 None:intergenic
GTAAAGGTTGAAAGGTTTCT+AGG 0.265157 7_2:-52827941 None:intergenic
AAATAATTCTAGTGTGAAAA+TGG 0.280136 7_2:+52829005 Msa1062200:CDS
ATCTCATCGGTGGTGGCGTT+GGG 0.300347 7_2:-52828639 None:intergenic
TTCCATATCGGAAGCTCTTT+AGG 0.302834 7_2:+52828757 Msa1062200:CDS
GGTGATCACCTAAGTGAAAT+AGG 0.308942 7_2:+52828685 Msa1062200:CDS
AGTTTGAAACTCCACATATA+TGG 0.315984 7_2:+52829288 Msa1062200:three_prime_UTR
ATCCTAATAGTGAACAATAT+TGG 0.316935 7_2:+52829094 Msa1062200:CDS
GAATCAATCTAGACAATTCT+TGG 0.322625 7_2:+52829032 Msa1062200:CDS
GCAAGGCTTGTCGAAGGTAT+TGG 0.355195 7_2:+52828464 Msa1062200:CDS
GTCTGAGCTTGCCGGCGACT+TGG 0.355952 7_2:-52828572 None:intergenic
AGTTGTTTGCAGAGCTAGTT+TGG 0.357904 7_2:-52828597 None:intergenic
CACCTAAAGAGCTTCCGATA+TGG 0.360566 7_2:-52828759 None:intergenic
TTCTTCTAATTATTAGGTTT+AGG 0.379272 7_2:+52829446 Msa1062200:three_prime_UTR
GTTTGGCGGTCTGAGCTTGC+CGG 0.381911 7_2:-52828580 None:intergenic
AGAGAGGGATCAAAGGGTTA+AGG 0.394747 7_2:-52827797 None:intergenic
CATGAGGTTGCGATGGTGTC+AGG 0.399816 7_2:-52828288 None:intergenic
ACCTGTTGATGCCAGTTGGC+TGG 0.401216 7_2:-52828025 None:intergenic
TAAACCATGGTTATTCCTCT+TGG 0.404319 7_2:-52827977 None:intergenic
CAGTTGGCTGGATCCATATA+TGG 0.404780 7_2:-52828013 None:intergenic
AAGAAAGAAAGAAAGAAGAG+AGG 0.409856 7_2:-52827813 None:intergenic
AGAAAGAAGAGAGGGATCAA+AGG 0.410619 7_2:-52827804 None:intergenic
AATCTCATCGGTGGTGGCGT+TGG 0.416328 7_2:-52828640 None:intergenic
GGAGACTTAAATTTCCATAT+CGG 0.426564 7_2:+52828745 Msa1062200:CDS
CTTCGACAACCACCTCCAAC+CGG 0.428779 7_2:-52828514 None:intergenic
GTCTTGAGATTAATAATAGT+AGG 0.430412 7_2:-52829263 None:intergenic
TGAGCTTGCCGGCGACTTGG+AGG 0.438606 7_2:-52828569 None:intergenic
TCCAGCCAACTGGCATCAAC+AGG 0.444071 7_2:+52828024 Msa1062200:CDS
GGATCAAAGGGTTAAGGAGG+TGG 0.451646 7_2:-52827791 None:intergenic
CTACTACAAATTCCAACTAT+AGG 0.452160 7_2:+52829190 Msa1062200:CDS
AAGGGAAATTGATGAGTTTG+TGG 0.457842 7_2:-52828862 None:intergenic
CCGCTACCACCACCTTCAAA+TGG 0.459662 7_2:-52828928 None:intergenic
AGTGAAATAGGACTAAACTA+TGG 0.460875 7_2:+52828697 Msa1062200:CDS
GCCCTATCTGCCATCGAACC+TGG 0.462544 7_2:-52828325 None:intergenic
GCCACCACCGATGAGATTCA+TGG 0.464462 7_2:+52828645 Msa1062200:CDS
GAAAGAAGAGAGGGATCAAA+GGG 0.466314 7_2:-52827803 None:intergenic
AATCAATCTAGACAATTCTT+GGG 0.469852 7_2:+52829033 Msa1062200:CDS
AGAATCTAAGTAACATCGCT+AGG 0.475141 7_2:-52829348 None:intergenic
GACCAGGTTCGATGGCAGAT+AGG 0.475722 7_2:+52828323 Msa1062200:CDS
AGAAAGAAAGAAAGAAGAGA+GGG 0.475829 7_2:-52827812 None:intergenic
TGCGTATGGTGGTGTGTCTA+AGG 0.477118 7_2:+52828975 Msa1062200:CDS
CATATATGGATCCAGCCAAC+TGG 0.482920 7_2:+52828014 Msa1062200:CDS
ATGGCTCCTTTGCATCATCT+AGG 0.483090 7_2:+52828664 Msa1062200:CDS
ATAAAGTTATGTCCTATAGT+TGG 0.484745 7_2:-52829202 None:intergenic
AAAGAGAGCTATCGGGGAAT+GGG 0.486965 7_2:+52827676 Msa1062200:five_prime_UTR
TAAAGGTTGAAAGGTTTCTA+GGG 0.487752 7_2:-52827940 None:intergenic
ACCAGGTTCGATGGCAGATA+GGG 0.488883 7_2:+52828324 Msa1062200:CDS
GAAGGTGGTGGTAGCGGTGG+TGG 0.489455 7_2:+52828934 Msa1062200:CDS
AGGTTCGATGGTTGAGGCTG+TGG 0.490154 7_2:-52828268 None:intergenic
TCTACTCCAATGGGAGGTGT+TGG 0.490285 7_2:+52828724 Msa1062200:CDS
TTCGACAAGCCTTGCAGAAG+TGG 0.490902 7_2:-52828456 None:intergenic
CATTGCTCAAAATTGCCAAC+AGG 0.493075 7_2:-52828832 None:intergenic
CCATTTGAAGGTGGTGGTAG+CGG 0.496097 7_2:+52828928 Msa1062200:CDS
CTTAGAAGTGTCCCGGTTGG+AGG 0.496913 7_2:+52828502 Msa1062200:CDS
GAGGGATCAAAGGGTTAAGG+AGG 0.504853 7_2:-52827794 None:intergenic
AGAAGTGTCCCGGTTGGAGG+TGG 0.505449 7_2:+52828505 Msa1062200:CDS
TGTCGAAGGTATTGGACAAA+AGG 0.506162 7_2:+52828472 Msa1062200:CDS
TCTTGAGATTAATAATAGTA+GGG 0.508512 7_2:-52829262 None:intergenic
AAAAGAGAGCTATCGGGGAA+TGG 0.509451 7_2:+52827675 Msa1062200:five_prime_UTR
TTAGGTGGAGGCGTTGGTAA+CGG 0.512562 7_2:+52828775 Msa1062200:CDS
AGTTTAGTCCTATTTCACTT+AGG 0.513240 7_2:-52828693 None:intergenic
AACGGTGGTGTCAACGGTGG+TGG 0.514797 7_2:+52828793 Msa1062200:CDS
GATGGTTGAGGCTGTGGTGG+TGG 0.518267 7_2:-52828262 None:intergenic
GGATTGTTGTATCCATTTGA+AGG 0.522126 7_2:+52828916 Msa1062200:CDS
TGGAATGCTTCTGCTGGTGG+TGG 0.522977 7_2:+52829114 Msa1062200:CDS
TGCGATGGTGTCAGGTTCGA+TGG 0.530120 7_2:-52828280 None:intergenic
AGCTTCTAAAGTTGACAAGA+AGG 0.532028 7_2:-52828881 None:intergenic
GTAGCAAAACTTTGTGTTGG+TGG 0.539364 7_2:-52828404 None:intergenic
GTAGTAGCAAAACTTTGTGT+TGG 0.542073 7_2:-52828407 None:intergenic
AAAGTACTAAACCATATATG+TGG 0.544412 7_2:-52829299 None:intergenic
AGCTCTTTAGGTGGAGGCGT+TGG 0.544707 7_2:+52828769 Msa1062200:CDS
CTGACACCATCGCAACCTCA+TGG 0.545229 7_2:+52828289 Msa1062200:CDS
GAGAGCTATCGGGGAATGGG+AGG 0.546285 7_2:+52827679 Msa1062200:five_prime_UTR
CTCGATCAGACCAGGTTCGA+TGG 0.546965 7_2:+52828315 Msa1062200:CDS
GCCATGAATCTCATCGGTGG+TGG 0.547604 7_2:-52828646 None:intergenic
CATGGAGGCTCGATCAGACC+AGG 0.549550 7_2:+52828307 Msa1062200:CDS
TTGTATCCATTTGAAGGTGG+TGG 0.552400 7_2:+52828922 Msa1062200:CDS
GCAGCCACGCCACTTCTGCA+AGG 0.554356 7_2:+52828447 Msa1062200:CDS
CAACAACACCTCCAAGTCGC+CGG 0.555102 7_2:+52828561 Msa1062200:CDS
ATCGGAAGCTCTTTAGGTGG+AGG 0.559518 7_2:+52828763 Msa1062200:CDS
ATTTACCTGTTGATGCCAGT+TGG 0.559637 7_2:-52828029 None:intergenic
GTTGGTAACGGTGGTGTCAA+CGG 0.562708 7_2:+52828787 Msa1062200:CDS
CAATATTGGAATGCTTCTGC+TGG 0.566637 7_2:+52829108 Msa1062200:CDS
GCCCTTAGAAGTGTCCCGGT+TGG 0.569239 7_2:+52828499 Msa1062200:CDS
TTCGATGGTTGAGGCTGTGG+TGG 0.570012 7_2:-52828265 None:intergenic
GTTGGGGAACTGAGTACCGC+AGG 0.570283 7_2:-52828622 None:intergenic
CATATCGGAAGCTCTTTAGG+TGG 0.571600 7_2:+52828760 Msa1062200:CDS
GATGGCAGATAGGGCAAGGA+TGG 0.575021 7_2:+52828333 Msa1062200:CDS
TAGACACACCACCATACGCA+TGG 0.575174 7_2:-52828972 None:intergenic
TCTCATCGGTGGTGGCGTTG+GGG 0.576658 7_2:-52828638 None:intergenic
TGTTTGCAGAGCTAGTTTGG+CGG 0.578980 7_2:-52828594 None:intergenic
AAGTCTCCAACACCTCCCAT+TGG 0.579899 7_2:-52828730 None:intergenic
TGGTGCCCTTAGAAGTGTCC+CGG 0.580450 7_2:+52828495 Msa1062200:CDS
TTAGAAGCTTCTTCTTCACA+TGG 0.581519 7_2:+52828895 Msa1062200:CDS
TATTGGAATGCTTCTGCTGG+TGG 0.586587 7_2:+52829111 Msa1062200:CDS
TTCGACAACCACCTCCAACC+GGG 0.589154 7_2:-52828513 None:intergenic
GCTTCTAAAGTTGACAAGAA+GGG 0.589264 7_2:-52828880 None:intergenic
CAAGCCTTGCAGAAGTGGCG+TGG 0.593138 7_2:-52828451 None:intergenic
GCAGCAACAAAATCATCAAG+TGG 0.596192 7_2:+52828207 Msa1062200:intron
GTGGTTGTCGAAGAAACAAA+AGG 0.598438 7_2:+52828524 Msa1062200:CDS
CGAAGGTATTGGACAAAAGG+TGG 0.602113 7_2:+52828475 Msa1062200:CDS
TTTGAAGGTGGTGGTAGCGG+TGG 0.603652 7_2:+52828931 Msa1062200:CDS
GAGCCTCCATGAGGTTGCGA+TGG 0.604696 7_2:-52828295 None:intergenic
AGAGCTATCGGGGAATGGGA+GGG 0.607461 7_2:+52827680 Msa1062200:five_prime_UTR
GGTGTCAGGTTCGATGGTTG+AGG 0.608734 7_2:-52828274 None:intergenic
TTGGCTGGATCCATATATGG+TGG 0.609224 7_2:-52828010 None:intergenic
GAATCTAAGTAACATCGCTA+GGG 0.609549 7_2:-52829347 None:intergenic
GTTCGATGGCAGATAGGGCA+AGG 0.614474 7_2:+52828329 Msa1062200:CDS
AGGACTGTTGACACTAGTGT+TGG 0.616145 7_2:-52828230 None:intergenic
TCCAACCGGGACACTTCTAA+GGG 0.619326 7_2:-52828500 None:intergenic
TTGTTGTATCCATTTGAAGG+TGG 0.620036 7_2:+52828919 Msa1062200:CDS
TGATCACCTAGATGATGCAA+AGG 0.622493 7_2:-52828670 None:intergenic
TGGCTGGATCCATATATGGT+GGG 0.628650 7_2:-52828009 None:intergenic
GGTGGAGGCGTTGGTAACGG+TGG 0.630519 7_2:+52828778 Msa1062200:CDS
AAAGGAGCCATGAATCTCAT+CGG 0.638198 7_2:-52828652 None:intergenic
ACTTCTGCAAGGCTTGTCGA+AGG 0.638852 7_2:+52828458 Msa1062200:CDS
TGTGGTGGTGGAATAAGTAG+AGG 0.640901 7_2:-52828250 None:intergenic
GCTGTAGAAAGATCTGTCCA+AGG 0.641214 7_2:-52829150 None:intergenic
GTGGTGCTACTAATTCACCT+TGG 0.642878 7_2:+52829133 Msa1062200:CDS
AGACACACCACCATACGCAT+GGG 0.645170 7_2:-52828971 None:intergenic
AATGATCAATCCCATGCGTA+TGG 0.649437 7_2:+52828961 Msa1062200:CDS
ACAAAAGATAAAGCTCCAAG+AGG 0.661855 7_2:+52827962 Msa1062200:five_prime_UTR
GATCAATCCCATGCGTATGG+TGG 0.672453 7_2:+52828964 Msa1062200:CDS
CTCTGCAAACAACTCTCCTG+CGG 0.677430 7_2:+52828606 Msa1062200:CDS
GTGTTGGTGGAATCACACCT+TGG 0.687306 7_2:-52828391 None:intergenic
GGTCTGATCGAGCCTCCATG+AGG 0.689453 7_2:-52828304 None:intergenic
GGAGCCATGAATCTCATCGG+TGG 0.692277 7_2:-52828649 None:intergenic
AGCTCCAAGAGGAATAACCA+TGG 0.692985 7_2:+52827973 Msa1062200:exon
GGTAACGGTGGTGTCAACGG+TGG 0.699310 7_2:+52828790 Msa1062200:CDS
TGGGAGAGAAGTATAAACCA+TGG 0.714065 7_2:-52827990 None:intergenic
ACACCATCGCAACCTCATGG+AGG 0.720835 7_2:+52828292 Msa1062200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGGAAATAAAAATTAA+TGG - chr7_2:52828186-52828205 None:intergenic 10.0%
!! GAAAAATTAAACTAAAAAAA+AGG - chr7_2:52829429-52829448 None:intergenic 10.0%
!!! TAATTTTTCTTCTAATTATT+AGG + chr7_2:52829440-52829459 Msa1062200:three_prime_UTR 10.0%
!! AAAAAGGAAATAAAAATTAA+TGG - chr7_2:52828186-52828205 None:intergenic 10.0%
!! GAAAAATTAAACTAAAAAAA+AGG - chr7_2:52829429-52829448 None:intergenic 10.0%
!!! TAATTTTTCTTCTAATTATT+AGG + chr7_2:52829440-52829459 Msa1062200:three_prime_UTR 10.0%
!! GATACATAAAATCAAATATT+TGG - chr7_2:52828159-52828178 None:intergenic 15.0%
!! GATACATAAAATCAAATATT+TGG - chr7_2:52828159-52828178 None:intergenic 15.0%
!! AAATAATTCTAGTGTGAAAA+TGG + chr7_2:52829005-52829024 Msa1062200:CDS 20.0%
!! TCTTGAGATTAATAATAGTA+GGG - chr7_2:52829265-52829284 None:intergenic 20.0%
!! TTCTTCTAATTATTAGGTTT+AGG + chr7_2:52829446-52829465 Msa1062200:three_prime_UTR 20.0%
!! AAATAATTCTAGTGTGAAAA+TGG + chr7_2:52829005-52829024 Msa1062200:CDS 20.0%
!! TCTTGAGATTAATAATAGTA+GGG - chr7_2:52829265-52829284 None:intergenic 20.0%
! TGATGAGAAGCTAAAAATAA+AGG - chr7_2:52827771-52827790 None:intergenic 25.0%
!! TATCTTTTGTAAAGGTTGAA+AGG - chr7_2:52827952-52827971 None:intergenic 25.0%
! ATTTGGTATATTCAAGAGAA+GGG - chr7_2:52828142-52828161 None:intergenic 25.0%
! TATTTGGTATATTCAAGAGA+AGG - chr7_2:52828143-52828162 None:intergenic 25.0%
! AATCAATCTAGACAATTCTT+GGG + chr7_2:52829033-52829052 Msa1062200:CDS 25.0%
! ATCCTAATAGTGAACAATAT+TGG + chr7_2:52829094-52829113 Msa1062200:CDS 25.0%
! TTCCAATATTGTTCACTATT+AGG - chr7_2:52829099-52829118 None:intergenic 25.0%
! ATAAAGTTATGTCCTATAGT+TGG - chr7_2:52829205-52829224 None:intergenic 25.0%
! GTCTTGAGATTAATAATAGT+AGG - chr7_2:52829266-52829285 None:intergenic 25.0%
!! AAAGTACTAAACCATATATG+TGG - chr7_2:52829302-52829321 None:intergenic 25.0%
!!! CTTATTTTTCCACTTTTTTG+AGG + chr7_2:52829369-52829388 Msa1062200:three_prime_UTR 25.0%
! AGATTAAAACCTCAAAAAAG+TGG - chr7_2:52829381-52829400 None:intergenic 25.0%
! TGATGAGAAGCTAAAAATAA+AGG - chr7_2:52827771-52827790 None:intergenic 25.0%
!! TATCTTTTGTAAAGGTTGAA+AGG - chr7_2:52827952-52827971 None:intergenic 25.0%
! ATTTGGTATATTCAAGAGAA+GGG - chr7_2:52828142-52828161 None:intergenic 25.0%
! TATTTGGTATATTCAAGAGA+AGG - chr7_2:52828143-52828162 None:intergenic 25.0%
! AATCAATCTAGACAATTCTT+GGG + chr7_2:52829033-52829052 Msa1062200:CDS 25.0%
! ATCCTAATAGTGAACAATAT+TGG + chr7_2:52829094-52829113 Msa1062200:CDS 25.0%
! TTCCAATATTGTTCACTATT+AGG - chr7_2:52829099-52829118 None:intergenic 25.0%
! ATAAAGTTATGTCCTATAGT+TGG - chr7_2:52829205-52829224 None:intergenic 25.0%
! GTCTTGAGATTAATAATAGT+AGG - chr7_2:52829266-52829285 None:intergenic 25.0%
!! AAAGTACTAAACCATATATG+TGG - chr7_2:52829302-52829321 None:intergenic 25.0%
!!! CTTATTTTTCCACTTTTTTG+AGG + chr7_2:52829369-52829388 Msa1062200:three_prime_UTR 25.0%
! AGATTAAAACCTCAAAAAAG+TGG - chr7_2:52829381-52829400 None:intergenic 25.0%
AAAACAAAAAGAGAGCTATC+GGG + chr7_2:52827669-52827688 Msa1062200:five_prime_UTR 30.0%
AGAAAGAAAGAAAGAAGAGA+GGG - chr7_2:52827815-52827834 None:intergenic 30.0%
AAGAAAGAAAGAAAGAAGAG+AGG - chr7_2:52827816-52827835 None:intergenic 30.0%
TAAAGGTTGAAAGGTTTCTA+GGG - chr7_2:52827943-52827962 None:intergenic 30.0%
!! TGGAGCTTTATCTTTTGTAA+AGG - chr7_2:52827960-52827979 None:intergenic 30.0%
ATCAACAGGTAAATCAACAA+GGG + chr7_2:52828038-52828057 Msa1062200:intron 30.0%
! TGATTTTGTTGCTGCAAAAA+AGG - chr7_2:52828202-52828221 None:intergenic 30.0%
AGTTTAGTCCTATTTCACTT+AGG - chr7_2:52828696-52828715 None:intergenic 30.0%
AGTGAAATAGGACTAAACTA+TGG + chr7_2:52828697-52828716 Msa1062200:CDS 30.0%
! TATGGTTTTTCTACTCCAAT+GGG + chr7_2:52828715-52828734 Msa1062200:CDS 30.0%
GGAGACTTAAATTTCCATAT+CGG + chr7_2:52828745-52828764 Msa1062200:CDS 30.0%
GAATCAATCTAGACAATTCT+TGG + chr7_2:52829032-52829051 Msa1062200:CDS 30.0%
CTACTACAAATTCCAACTAT+AGG + chr7_2:52829190-52829209 Msa1062200:CDS 30.0%
! AGTTTGAAACTCCACATATA+TGG + chr7_2:52829288-52829307 Msa1062200:three_prime_UTR 30.0%
AAAACAAAAAGAGAGCTATC+GGG + chr7_2:52827669-52827688 Msa1062200:five_prime_UTR 30.0%
AGAAAGAAAGAAAGAAGAGA+GGG - chr7_2:52827815-52827834 None:intergenic 30.0%
AAGAAAGAAAGAAAGAAGAG+AGG - chr7_2:52827816-52827835 None:intergenic 30.0%
TAAAGGTTGAAAGGTTTCTA+GGG - chr7_2:52827943-52827962 None:intergenic 30.0%
!! TGGAGCTTTATCTTTTGTAA+AGG - chr7_2:52827960-52827979 None:intergenic 30.0%
ATCAACAGGTAAATCAACAA+GGG + chr7_2:52828038-52828057 Msa1062200:intron 30.0%
! TGATTTTGTTGCTGCAAAAA+AGG - chr7_2:52828202-52828221 None:intergenic 30.0%
AGTTTAGTCCTATTTCACTT+AGG - chr7_2:52828696-52828715 None:intergenic 30.0%
AGTGAAATAGGACTAAACTA+TGG + chr7_2:52828697-52828716 Msa1062200:CDS 30.0%
! TATGGTTTTTCTACTCCAAT+GGG + chr7_2:52828715-52828734 Msa1062200:CDS 30.0%
GGAGACTTAAATTTCCATAT+CGG + chr7_2:52828745-52828764 Msa1062200:CDS 30.0%
GAATCAATCTAGACAATTCT+TGG + chr7_2:52829032-52829051 Msa1062200:CDS 30.0%
CTACTACAAATTCCAACTAT+AGG + chr7_2:52829190-52829209 Msa1062200:CDS 30.0%
! AGTTTGAAACTCCACATATA+TGG + chr7_2:52829288-52829307 Msa1062200:three_prime_UTR 30.0%
AAACAAAAAGAGAGCTATCG+GGG + chr7_2:52827670-52827689 Msa1062200:five_prime_UTR 35.0%
GTAAAGGTTGAAAGGTTTCT+AGG - chr7_2:52827944-52827963 None:intergenic 35.0%
ACAAAAGATAAAGCTCCAAG+AGG + chr7_2:52827962-52827981 Msa1062200:five_prime_UTR 35.0%
TAAACCATGGTTATTCCTCT+TGG - chr7_2:52827980-52827999 None:intergenic 35.0%
CATCAACAGGTAAATCAACA+AGG + chr7_2:52828037-52828056 Msa1062200:intron 35.0%
TCAACAAGGGTTCTTCAATT+AGG + chr7_2:52828051-52828070 Msa1062200:intron 35.0%
! TTTTGTGATGGTTCTTGCAT+AGG - chr7_2:52828367-52828386 None:intergenic 35.0%
AACCATCACAAAAATGTCCA+AGG + chr7_2:52828374-52828393 Msa1062200:CDS 35.0%
GTAGTAGCAAAACTTTGTGT+TGG - chr7_2:52828410-52828429 None:intergenic 35.0%
! CTATGGTTTTTCTACTCCAA+TGG + chr7_2:52828714-52828733 Msa1062200:CDS 35.0%
! TCTACTTCGATTTTACCTGT+TGG + chr7_2:52828817-52828836 Msa1062200:CDS 35.0%
AAGGGAAATTGATGAGTTTG+TGG - chr7_2:52828865-52828884 None:intergenic 35.0%
!! GCTTCTAAAGTTGACAAGAA+GGG - chr7_2:52828883-52828902 None:intergenic 35.0%
!! AGCTTCTAAAGTTGACAAGA+AGG - chr7_2:52828884-52828903 None:intergenic 35.0%
TTAGAAGCTTCTTCTTCACA+TGG + chr7_2:52828895-52828914 Msa1062200:CDS 35.0%
GGATTGTTGTATCCATTTGA+AGG + chr7_2:52828916-52828935 Msa1062200:CDS 35.0%
TTGTTGTATCCATTTGAAGG+TGG + chr7_2:52828919-52828938 Msa1062200:CDS 35.0%
GAATCTAAGTAACATCGCTA+GGG - chr7_2:52829350-52829369 None:intergenic 35.0%
AGAATCTAAGTAACATCGCT+AGG - chr7_2:52829351-52829370 None:intergenic 35.0%
AAACAAAAAGAGAGCTATCG+GGG + chr7_2:52827670-52827689 Msa1062200:five_prime_UTR 35.0%
GTAAAGGTTGAAAGGTTTCT+AGG - chr7_2:52827944-52827963 None:intergenic 35.0%
ACAAAAGATAAAGCTCCAAG+AGG + chr7_2:52827962-52827981 Msa1062200:five_prime_UTR 35.0%
TAAACCATGGTTATTCCTCT+TGG - chr7_2:52827980-52827999 None:intergenic 35.0%
CATCAACAGGTAAATCAACA+AGG + chr7_2:52828037-52828056 Msa1062200:intron 35.0%
TCAACAAGGGTTCTTCAATT+AGG + chr7_2:52828051-52828070 Msa1062200:intron 35.0%
! TTTTGTGATGGTTCTTGCAT+AGG - chr7_2:52828367-52828386 None:intergenic 35.0%
AACCATCACAAAAATGTCCA+AGG + chr7_2:52828374-52828393 Msa1062200:CDS 35.0%
GTAGTAGCAAAACTTTGTGT+TGG - chr7_2:52828410-52828429 None:intergenic 35.0%
! CTATGGTTTTTCTACTCCAA+TGG + chr7_2:52828714-52828733 Msa1062200:CDS 35.0%
! TCTACTTCGATTTTACCTGT+TGG + chr7_2:52828817-52828836 Msa1062200:CDS 35.0%
AAGGGAAATTGATGAGTTTG+TGG - chr7_2:52828865-52828884 None:intergenic 35.0%
!! GCTTCTAAAGTTGACAAGAA+GGG - chr7_2:52828883-52828902 None:intergenic 35.0%
!! AGCTTCTAAAGTTGACAAGA+AGG - chr7_2:52828884-52828903 None:intergenic 35.0%
TTAGAAGCTTCTTCTTCACA+TGG + chr7_2:52828895-52828914 Msa1062200:CDS 35.0%
GGATTGTTGTATCCATTTGA+AGG + chr7_2:52828916-52828935 Msa1062200:CDS 35.0%
TTGTTGTATCCATTTGAAGG+TGG + chr7_2:52828919-52828938 Msa1062200:CDS 35.0%
GAATCTAAGTAACATCGCTA+GGG - chr7_2:52829350-52829369 None:intergenic 35.0%
AGAATCTAAGTAACATCGCT+AGG - chr7_2:52829351-52829370 None:intergenic 35.0%
GAAAGAAGAGAGGGATCAAA+GGG - chr7_2:52827806-52827825 None:intergenic 40.0%
AGAAAGAAGAGAGGGATCAA+AGG - chr7_2:52827807-52827826 None:intergenic 40.0%
!!! GTGTGTGTGTGTTTTGTTTG+TGG - chr7_2:52827876-52827895 None:intergenic 40.0%
! TGGGAGAGAAGTATAAACCA+TGG - chr7_2:52827993-52828012 None:intergenic 40.0%
TACTTCTCTCCCACCATATA+TGG + chr7_2:52828000-52828019 Msa1062200:CDS 40.0%
ATTTACCTGTTGATGCCAGT+TGG - chr7_2:52828032-52828051 None:intergenic 40.0%
GCAGCAACAAAATCATCAAG+TGG + chr7_2:52828207-52828226 Msa1062200:intron 40.0%
! CACCTTGGACATTTTTGTGA+TGG - chr7_2:52828379-52828398 None:intergenic 40.0%
GTAGCAAAACTTTGTGTTGG+TGG - chr7_2:52828407-52828426 None:intergenic 40.0%
!! TGTCGAAGGTATTGGACAAA+AGG + chr7_2:52828472-52828491 Msa1062200:CDS 40.0%
GTGGTTGTCGAAGAAACAAA+AGG + chr7_2:52828524-52828543 Msa1062200:CDS 40.0%
AGTTGTTTGCAGAGCTAGTT+TGG - chr7_2:52828600-52828619 None:intergenic 40.0%
AAAGGAGCCATGAATCTCAT+CGG - chr7_2:52828655-52828674 None:intergenic 40.0%
TGATCACCTAGATGATGCAA+AGG - chr7_2:52828673-52828692 None:intergenic 40.0%
GGTGATCACCTAAGTGAAAT+AGG + chr7_2:52828685-52828704 Msa1062200:CDS 40.0%
TTCCATATCGGAAGCTCTTT+AGG + chr7_2:52828757-52828776 Msa1062200:CDS 40.0%
CATTGCTCAAAATTGCCAAC+AGG - chr7_2:52828835-52828854 None:intergenic 40.0%
! CTGTTGGCAATTTTGAGCAA+TGG + chr7_2:52828833-52828852 Msa1062200:CDS 40.0%
! TTGGCAATTTTGAGCAATGG+AGG + chr7_2:52828836-52828855 Msa1062200:CDS 40.0%
TTGTATCCATTTGAAGGTGG+TGG + chr7_2:52828922-52828941 Msa1062200:CDS 40.0%
AATGATCAATCCCATGCGTA+TGG + chr7_2:52828961-52828980 Msa1062200:CDS 40.0%
CAATATTGGAATGCTTCTGC+TGG + chr7_2:52829108-52829127 Msa1062200:CDS 40.0%
GAAAGAAGAGAGGGATCAAA+GGG - chr7_2:52827806-52827825 None:intergenic 40.0%
AGAAAGAAGAGAGGGATCAA+AGG - chr7_2:52827807-52827826 None:intergenic 40.0%
!!! GTGTGTGTGTGTTTTGTTTG+TGG - chr7_2:52827876-52827895 None:intergenic 40.0%
! TGGGAGAGAAGTATAAACCA+TGG - chr7_2:52827993-52828012 None:intergenic 40.0%
TACTTCTCTCCCACCATATA+TGG + chr7_2:52828000-52828019 Msa1062200:CDS 40.0%
ATTTACCTGTTGATGCCAGT+TGG - chr7_2:52828032-52828051 None:intergenic 40.0%
GCAGCAACAAAATCATCAAG+TGG + chr7_2:52828207-52828226 Msa1062200:intron 40.0%
! CACCTTGGACATTTTTGTGA+TGG - chr7_2:52828379-52828398 None:intergenic 40.0%
GTAGCAAAACTTTGTGTTGG+TGG - chr7_2:52828407-52828426 None:intergenic 40.0%
!! TGTCGAAGGTATTGGACAAA+AGG + chr7_2:52828472-52828491 Msa1062200:CDS 40.0%
GTGGTTGTCGAAGAAACAAA+AGG + chr7_2:52828524-52828543 Msa1062200:CDS 40.0%
AGTTGTTTGCAGAGCTAGTT+TGG - chr7_2:52828600-52828619 None:intergenic 40.0%
AAAGGAGCCATGAATCTCAT+CGG - chr7_2:52828655-52828674 None:intergenic 40.0%
TGATCACCTAGATGATGCAA+AGG - chr7_2:52828673-52828692 None:intergenic 40.0%
GGTGATCACCTAAGTGAAAT+AGG + chr7_2:52828685-52828704 Msa1062200:CDS 40.0%
TTCCATATCGGAAGCTCTTT+AGG + chr7_2:52828757-52828776 Msa1062200:CDS 40.0%
CATTGCTCAAAATTGCCAAC+AGG - chr7_2:52828835-52828854 None:intergenic 40.0%
! CTGTTGGCAATTTTGAGCAA+TGG + chr7_2:52828833-52828852 Msa1062200:CDS 40.0%
! TTGGCAATTTTGAGCAATGG+AGG + chr7_2:52828836-52828855 Msa1062200:CDS 40.0%
TTGTATCCATTTGAAGGTGG+TGG + chr7_2:52828922-52828941 Msa1062200:CDS 40.0%
AATGATCAATCCCATGCGTA+TGG + chr7_2:52828961-52828980 Msa1062200:CDS 40.0%
CAATATTGGAATGCTTCTGC+TGG + chr7_2:52829108-52829127 Msa1062200:CDS 40.0%
AAAAGAGAGCTATCGGGGAA+TGG + chr7_2:52827675-52827694 Msa1062200:five_prime_UTR 45.0%
AAAGAGAGCTATCGGGGAAT+GGG + chr7_2:52827676-52827695 Msa1062200:five_prime_UTR 45.0%
AGAGAGGGATCAAAGGGTTA+AGG - chr7_2:52827800-52827819 None:intergenic 45.0%
AGCTCCAAGAGGAATAACCA+TGG + chr7_2:52827973-52827992 Msa1062200:exon 45.0%
TGGCTGGATCCATATATGGT+GGG - chr7_2:52828012-52828031 None:intergenic 45.0%
TTGGCTGGATCCATATATGG+TGG - chr7_2:52828013-52828032 None:intergenic 45.0%
CAGTTGGCTGGATCCATATA+TGG - chr7_2:52828016-52828035 None:intergenic 45.0%
CATATATGGATCCAGCCAAC+TGG + chr7_2:52828014-52828033 Msa1062200:CDS 45.0%
AGGACTGTTGACACTAGTGT+TGG - chr7_2:52828233-52828252 None:intergenic 45.0%
!! TGTGGTGGTGGAATAAGTAG+AGG - chr7_2:52828253-52828272 None:intergenic 45.0%
!! CGAAGGTATTGGACAAAAGG+TGG + chr7_2:52828475-52828494 Msa1062200:CDS 45.0%
! TGTTTGCAGAGCTAGTTTGG+CGG - chr7_2:52828597-52828616 None:intergenic 45.0%
ATGGCTCCTTTGCATCATCT+AGG + chr7_2:52828664-52828683 Msa1062200:CDS 45.0%
! GGTTTTTCTACTCCAATGGG+AGG + chr7_2:52828718-52828737 Msa1062200:CDS 45.0%
CACCTAAAGAGCTTCCGATA+TGG - chr7_2:52828762-52828781 None:intergenic 45.0%
CATATCGGAAGCTCTTTAGG+TGG + chr7_2:52828760-52828779 Msa1062200:CDS 45.0%
TATTGGAATGCTTCTGCTGG+TGG + chr7_2:52829111-52829130 Msa1062200:CDS 45.0%
!! GTGGTGCTACTAATTCACCT+TGG + chr7_2:52829133-52829152 Msa1062200:CDS 45.0%
GCTGTAGAAAGATCTGTCCA+AGG - chr7_2:52829153-52829172 None:intergenic 45.0%
AAAAGAGAGCTATCGGGGAA+TGG + chr7_2:52827675-52827694 Msa1062200:five_prime_UTR 45.0%
AAAGAGAGCTATCGGGGAAT+GGG + chr7_2:52827676-52827695 Msa1062200:five_prime_UTR 45.0%
AGAGAGGGATCAAAGGGTTA+AGG - chr7_2:52827800-52827819 None:intergenic 45.0%
AGCTCCAAGAGGAATAACCA+TGG + chr7_2:52827973-52827992 Msa1062200:exon 45.0%
TGGCTGGATCCATATATGGT+GGG - chr7_2:52828012-52828031 None:intergenic 45.0%
TTGGCTGGATCCATATATGG+TGG - chr7_2:52828013-52828032 None:intergenic 45.0%
CAGTTGGCTGGATCCATATA+TGG - chr7_2:52828016-52828035 None:intergenic 45.0%
CATATATGGATCCAGCCAAC+TGG + chr7_2:52828014-52828033 Msa1062200:CDS 45.0%
AGGACTGTTGACACTAGTGT+TGG - chr7_2:52828233-52828252 None:intergenic 45.0%
!! TGTGGTGGTGGAATAAGTAG+AGG - chr7_2:52828253-52828272 None:intergenic 45.0%
!! CGAAGGTATTGGACAAAAGG+TGG + chr7_2:52828475-52828494 Msa1062200:CDS 45.0%
! TGTTTGCAGAGCTAGTTTGG+CGG - chr7_2:52828597-52828616 None:intergenic 45.0%
ATGGCTCCTTTGCATCATCT+AGG + chr7_2:52828664-52828683 Msa1062200:CDS 45.0%
! GGTTTTTCTACTCCAATGGG+AGG + chr7_2:52828718-52828737 Msa1062200:CDS 45.0%
CACCTAAAGAGCTTCCGATA+TGG - chr7_2:52828762-52828781 None:intergenic 45.0%
CATATCGGAAGCTCTTTAGG+TGG + chr7_2:52828760-52828779 Msa1062200:CDS 45.0%
TATTGGAATGCTTCTGCTGG+TGG + chr7_2:52829111-52829130 Msa1062200:CDS 45.0%
!! GTGGTGCTACTAATTCACCT+TGG + chr7_2:52829133-52829152 Msa1062200:CDS 45.0%
GCTGTAGAAAGATCTGTCCA+AGG - chr7_2:52829153-52829172 None:intergenic 45.0%
GGATCAAAGGGTTAAGGAGG+TGG - chr7_2:52827794-52827813 None:intergenic 50.0%
GAGGGATCAAAGGGTTAAGG+AGG - chr7_2:52827797-52827816 None:intergenic 50.0%
ACCAGGTTCGATGGCAGATA+GGG + chr7_2:52828324-52828343 Msa1062200:CDS 50.0%
! GTGTTGGTGGAATCACACCT+TGG - chr7_2:52828394-52828413 None:intergenic 50.0%
TTCGACAAGCCTTGCAGAAG+TGG - chr7_2:52828459-52828478 None:intergenic 50.0%
ACTTCTGCAAGGCTTGTCGA+AGG + chr7_2:52828458-52828477 Msa1062200:CDS 50.0%
! GCAAGGCTTGTCGAAGGTAT+TGG + chr7_2:52828464-52828483 Msa1062200:CDS 50.0%
TCCAACCGGGACACTTCTAA+GGG - chr7_2:52828503-52828522 None:intergenic 50.0%
CTCTGCAAACAACTCTCCTG+CGG + chr7_2:52828606-52828625 Msa1062200:CDS 50.0%
! TCTACTCCAATGGGAGGTGT+TGG + chr7_2:52828724-52828743 Msa1062200:CDS 50.0%
AAGTCTCCAACACCTCCCAT+TGG - chr7_2:52828733-52828752 None:intergenic 50.0%
ATCGGAAGCTCTTTAGGTGG+AGG + chr7_2:52828763-52828782 Msa1062200:CDS 50.0%
!! TTAGGTGGAGGCGTTGGTAA+CGG + chr7_2:52828775-52828794 Msa1062200:CDS 50.0%
!! GTTGGTAACGGTGGTGTCAA+CGG + chr7_2:52828787-52828806 Msa1062200:CDS 50.0%
! CCATTTGAAGGTGGTGGTAG+CGG + chr7_2:52828928-52828947 Msa1062200:CDS 50.0%
GATCAATCCCATGCGTATGG+TGG + chr7_2:52828964-52828983 Msa1062200:CDS 50.0%
AGACACACCACCATACGCAT+GGG - chr7_2:52828974-52828993 None:intergenic 50.0%
TAGACACACCACCATACGCA+TGG - chr7_2:52828975-52828994 None:intergenic 50.0%
! TGCGTATGGTGGTGTGTCTA+AGG + chr7_2:52828975-52828994 Msa1062200:CDS 50.0%
GGATCAAAGGGTTAAGGAGG+TGG - chr7_2:52827794-52827813 None:intergenic 50.0%
GAGGGATCAAAGGGTTAAGG+AGG - chr7_2:52827797-52827816 None:intergenic 50.0%
ACCAGGTTCGATGGCAGATA+GGG + chr7_2:52828324-52828343 Msa1062200:CDS 50.0%
! GTGTTGGTGGAATCACACCT+TGG - chr7_2:52828394-52828413 None:intergenic 50.0%
TTCGACAAGCCTTGCAGAAG+TGG - chr7_2:52828459-52828478 None:intergenic 50.0%
ACTTCTGCAAGGCTTGTCGA+AGG + chr7_2:52828458-52828477 Msa1062200:CDS 50.0%
! GCAAGGCTTGTCGAAGGTAT+TGG + chr7_2:52828464-52828483 Msa1062200:CDS 50.0%
TCCAACCGGGACACTTCTAA+GGG - chr7_2:52828503-52828522 None:intergenic 50.0%
CTCTGCAAACAACTCTCCTG+CGG + chr7_2:52828606-52828625 Msa1062200:CDS 50.0%
! TCTACTCCAATGGGAGGTGT+TGG + chr7_2:52828724-52828743 Msa1062200:CDS 50.0%
AAGTCTCCAACACCTCCCAT+TGG - chr7_2:52828733-52828752 None:intergenic 50.0%
ATCGGAAGCTCTTTAGGTGG+AGG + chr7_2:52828763-52828782 Msa1062200:CDS 50.0%
!! TTAGGTGGAGGCGTTGGTAA+CGG + chr7_2:52828775-52828794 Msa1062200:CDS 50.0%
!! GTTGGTAACGGTGGTGTCAA+CGG + chr7_2:52828787-52828806 Msa1062200:CDS 50.0%
! CCATTTGAAGGTGGTGGTAG+CGG + chr7_2:52828928-52828947 Msa1062200:CDS 50.0%
GATCAATCCCATGCGTATGG+TGG + chr7_2:52828964-52828983 Msa1062200:CDS 50.0%
AGACACACCACCATACGCAT+GGG - chr7_2:52828974-52828993 None:intergenic 50.0%
TAGACACACCACCATACGCA+TGG - chr7_2:52828975-52828994 None:intergenic 50.0%
! TGCGTATGGTGGTGTGTCTA+AGG + chr7_2:52828975-52828994 Msa1062200:CDS 50.0%
AGAGCTATCGGGGAATGGGA+GGG + chr7_2:52827680-52827699 Msa1062200:five_prime_UTR 55.0%
TCCAGCCAACTGGCATCAAC+AGG + chr7_2:52828024-52828043 Msa1062200:CDS 55.0%
ACCTGTTGATGCCAGTTGGC+TGG - chr7_2:52828028-52828047 None:intergenic 55.0%
TTCGATGGTTGAGGCTGTGG+TGG - chr7_2:52828268-52828287 None:intergenic 55.0%
AGGTTCGATGGTTGAGGCTG+TGG - chr7_2:52828271-52828290 None:intergenic 55.0%
GGTGTCAGGTTCGATGGTTG+AGG - chr7_2:52828277-52828296 None:intergenic 55.0%
! TGCGATGGTGTCAGGTTCGA+TGG - chr7_2:52828283-52828302 None:intergenic 55.0%
CATGAGGTTGCGATGGTGTC+AGG - chr7_2:52828291-52828310 None:intergenic 55.0%
CTGACACCATCGCAACCTCA+TGG + chr7_2:52828289-52828308 Msa1062200:CDS 55.0%
ACACCATCGCAACCTCATGG+AGG + chr7_2:52828292-52828311 Msa1062200:CDS 55.0%
CTCGATCAGACCAGGTTCGA+TGG + chr7_2:52828315-52828334 Msa1062200:CDS 55.0%
GACCAGGTTCGATGGCAGAT+AGG + chr7_2:52828323-52828342 Msa1062200:CDS 55.0%
GTTCGATGGCAGATAGGGCA+AGG + chr7_2:52828329-52828348 Msa1062200:CDS 55.0%
GATGGCAGATAGGGCAAGGA+TGG + chr7_2:52828333-52828352 Msa1062200:CDS 55.0%
!! TGGTGCCCTTAGAAGTGTCC+CGG + chr7_2:52828495-52828514 Msa1062200:CDS 55.0%
CTCCAACCGGGACACTTCTA+AGG - chr7_2:52828504-52828523 None:intergenic 55.0%
!! CTTAGAAGTGTCCCGGTTGG+AGG + chr7_2:52828502-52828521 Msa1062200:CDS 55.0%
TTCGACAACCACCTCCAACC+GGG - chr7_2:52828516-52828535 None:intergenic 55.0%
CTTCGACAACCACCTCCAAC+CGG - chr7_2:52828517-52828536 None:intergenic 55.0%
CAACAACACCTCCAAGTCGC+CGG + chr7_2:52828561-52828580 Msa1062200:CDS 55.0%
! ATCTCATCGGTGGTGGCGTT+GGG - chr7_2:52828642-52828661 None:intergenic 55.0%
! AATCTCATCGGTGGTGGCGT+TGG - chr7_2:52828643-52828662 None:intergenic 55.0%
GCCACCACCGATGAGATTCA+TGG + chr7_2:52828645-52828664 Msa1062200:CDS 55.0%
GCCATGAATCTCATCGGTGG+TGG - chr7_2:52828649-52828668 None:intergenic 55.0%
GGAGCCATGAATCTCATCGG+TGG - chr7_2:52828652-52828671 None:intergenic 55.0%
! AGCTCTTTAGGTGGAGGCGT+TGG + chr7_2:52828769-52828788 Msa1062200:CDS 55.0%
CCGCTACCACCACCTTCAAA+TGG - chr7_2:52828931-52828950 None:intergenic 55.0%
!! TTTGAAGGTGGTGGTAGCGG+TGG + chr7_2:52828931-52828950 Msa1062200:CDS 55.0%
TGGAATGCTTCTGCTGGTGG+TGG + chr7_2:52829114-52829133 Msa1062200:CDS 55.0%
AGAGCTATCGGGGAATGGGA+GGG + chr7_2:52827680-52827699 Msa1062200:five_prime_UTR 55.0%
TCCAGCCAACTGGCATCAAC+AGG + chr7_2:52828024-52828043 Msa1062200:CDS 55.0%
ACCTGTTGATGCCAGTTGGC+TGG - chr7_2:52828028-52828047 None:intergenic 55.0%
TTCGATGGTTGAGGCTGTGG+TGG - chr7_2:52828268-52828287 None:intergenic 55.0%
AGGTTCGATGGTTGAGGCTG+TGG - chr7_2:52828271-52828290 None:intergenic 55.0%
GGTGTCAGGTTCGATGGTTG+AGG - chr7_2:52828277-52828296 None:intergenic 55.0%
! TGCGATGGTGTCAGGTTCGA+TGG - chr7_2:52828283-52828302 None:intergenic 55.0%
CATGAGGTTGCGATGGTGTC+AGG - chr7_2:52828291-52828310 None:intergenic 55.0%
CTGACACCATCGCAACCTCA+TGG + chr7_2:52828289-52828308 Msa1062200:CDS 55.0%
ACACCATCGCAACCTCATGG+AGG + chr7_2:52828292-52828311 Msa1062200:CDS 55.0%
CTCGATCAGACCAGGTTCGA+TGG + chr7_2:52828315-52828334 Msa1062200:CDS 55.0%
GACCAGGTTCGATGGCAGAT+AGG + chr7_2:52828323-52828342 Msa1062200:CDS 55.0%
GTTCGATGGCAGATAGGGCA+AGG + chr7_2:52828329-52828348 Msa1062200:CDS 55.0%
GATGGCAGATAGGGCAAGGA+TGG + chr7_2:52828333-52828352 Msa1062200:CDS 55.0%
!! TGGTGCCCTTAGAAGTGTCC+CGG + chr7_2:52828495-52828514 Msa1062200:CDS 55.0%
CTCCAACCGGGACACTTCTA+AGG - chr7_2:52828504-52828523 None:intergenic 55.0%
!! CTTAGAAGTGTCCCGGTTGG+AGG + chr7_2:52828502-52828521 Msa1062200:CDS 55.0%
TTCGACAACCACCTCCAACC+GGG - chr7_2:52828516-52828535 None:intergenic 55.0%
CTTCGACAACCACCTCCAAC+CGG - chr7_2:52828517-52828536 None:intergenic 55.0%
CAACAACACCTCCAAGTCGC+CGG + chr7_2:52828561-52828580 Msa1062200:CDS 55.0%
! ATCTCATCGGTGGTGGCGTT+GGG - chr7_2:52828642-52828661 None:intergenic 55.0%
! AATCTCATCGGTGGTGGCGT+TGG - chr7_2:52828643-52828662 None:intergenic 55.0%
GCCACCACCGATGAGATTCA+TGG + chr7_2:52828645-52828664 Msa1062200:CDS 55.0%
GCCATGAATCTCATCGGTGG+TGG - chr7_2:52828649-52828668 None:intergenic 55.0%
GGAGCCATGAATCTCATCGG+TGG - chr7_2:52828652-52828671 None:intergenic 55.0%
! AGCTCTTTAGGTGGAGGCGT+TGG + chr7_2:52828769-52828788 Msa1062200:CDS 55.0%
CCGCTACCACCACCTTCAAA+TGG - chr7_2:52828931-52828950 None:intergenic 55.0%
!! TTTGAAGGTGGTGGTAGCGG+TGG + chr7_2:52828931-52828950 Msa1062200:CDS 55.0%
TGGAATGCTTCTGCTGGTGG+TGG + chr7_2:52829114-52829133 Msa1062200:CDS 55.0%
GAGAGCTATCGGGGAATGGG+AGG + chr7_2:52827679-52827698 Msa1062200:five_prime_UTR 60.0%
GATGGTTGAGGCTGTGGTGG+TGG - chr7_2:52828265-52828284 None:intergenic 60.0%
GAGCCTCCATGAGGTTGCGA+TGG - chr7_2:52828298-52828317 None:intergenic 60.0%
GGTCTGATCGAGCCTCCATG+AGG - chr7_2:52828307-52828326 None:intergenic 60.0%
CATGGAGGCTCGATCAGACC+AGG + chr7_2:52828307-52828326 Msa1062200:CDS 60.0%
GCCCTATCTGCCATCGAACC+TGG - chr7_2:52828328-52828347 None:intergenic 60.0%
CAAGCCTTGCAGAAGTGGCG+TGG - chr7_2:52828454-52828473 None:intergenic 60.0%
!! GCCCTTAGAAGTGTCCCGGT+TGG + chr7_2:52828499-52828518 Msa1062200:CDS 60.0%
!! AGAAGTGTCCCGGTTGGAGG+TGG + chr7_2:52828505-52828524 Msa1062200:CDS 60.0%
GTTTGGCGGTCTGAGCTTGC+CGG - chr7_2:52828583-52828602 None:intergenic 60.0%
! GTTGGGGAACTGAGTACCGC+AGG - chr7_2:52828625-52828644 None:intergenic 60.0%
! TCTCATCGGTGGTGGCGTTG+GGG - chr7_2:52828641-52828660 None:intergenic 60.0%
! GGTAACGGTGGTGTCAACGG+TGG + chr7_2:52828790-52828809 Msa1062200:CDS 60.0%
! AACGGTGGTGTCAACGGTGG+TGG + chr7_2:52828793-52828812 Msa1062200:CDS 60.0%
GAGAGCTATCGGGGAATGGG+AGG + chr7_2:52827679-52827698 Msa1062200:five_prime_UTR 60.0%
GATGGTTGAGGCTGTGGTGG+TGG - chr7_2:52828265-52828284 None:intergenic 60.0%
GAGCCTCCATGAGGTTGCGA+TGG - chr7_2:52828298-52828317 None:intergenic 60.0%
GGTCTGATCGAGCCTCCATG+AGG - chr7_2:52828307-52828326 None:intergenic 60.0%
CATGGAGGCTCGATCAGACC+AGG + chr7_2:52828307-52828326 Msa1062200:CDS 60.0%
GCCCTATCTGCCATCGAACC+TGG - chr7_2:52828328-52828347 None:intergenic 60.0%
CAAGCCTTGCAGAAGTGGCG+TGG - chr7_2:52828454-52828473 None:intergenic 60.0%
!! GCCCTTAGAAGTGTCCCGGT+TGG + chr7_2:52828499-52828518 Msa1062200:CDS 60.0%
!! AGAAGTGTCCCGGTTGGAGG+TGG + chr7_2:52828505-52828524 Msa1062200:CDS 60.0%
GTTTGGCGGTCTGAGCTTGC+CGG - chr7_2:52828583-52828602 None:intergenic 60.0%
! GTTGGGGAACTGAGTACCGC+AGG - chr7_2:52828625-52828644 None:intergenic 60.0%
! TCTCATCGGTGGTGGCGTTG+GGG - chr7_2:52828641-52828660 None:intergenic 60.0%
! GGTAACGGTGGTGTCAACGG+TGG + chr7_2:52828790-52828809 Msa1062200:CDS 60.0%
! AACGGTGGTGTCAACGGTGG+TGG + chr7_2:52828793-52828812 Msa1062200:CDS 60.0%
GCAGCCACGCCACTTCTGCA+AGG + chr7_2:52828447-52828466 Msa1062200:CDS 65.0%
! TGAGCTTGCCGGCGACTTGG+AGG - chr7_2:52828572-52828591 None:intergenic 65.0%
GTCTGAGCTTGCCGGCGACT+TGG - chr7_2:52828575-52828594 None:intergenic 65.0%
!! GGTGGAGGCGTTGGTAACGG+TGG + chr7_2:52828778-52828797 Msa1062200:CDS 65.0%
!! GAAGGTGGTGGTAGCGGTGG+TGG + chr7_2:52828934-52828953 Msa1062200:CDS 65.0%
GCAGCCACGCCACTTCTGCA+AGG + chr7_2:52828447-52828466 Msa1062200:CDS 65.0%
! TGAGCTTGCCGGCGACTTGG+AGG - chr7_2:52828572-52828591 None:intergenic 65.0%
GTCTGAGCTTGCCGGCGACT+TGG - chr7_2:52828575-52828594 None:intergenic 65.0%
!! GGTGGAGGCGTTGGTAACGG+TGG + chr7_2:52828778-52828797 Msa1062200:CDS 65.0%
!! GAAGGTGGTGGTAGCGGTGG+TGG + chr7_2:52828934-52828953 Msa1062200:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 52827669 52829468 52827669 ID=Msa1062200;Name=Msa1062200
chr7_2 mRNA 52827669 52829468 52827669 ID=Msa1062200-mRNA-1;Parent=Msa1062200;Name=Msa1062200-mRNA-1;_AED=0.00;_eAED=0.00;_QI=323|1|1|1|1|1|2|250|353
chr7_2 exon 52827669 52828045 52827669 ID=Msa1062200-mRNA-1:exon:9536;Parent=Msa1062200-mRNA-1
chr7_2 exon 52828211 52829468 52828211 ID=Msa1062200-mRNA-1:exon:9537;Parent=Msa1062200-mRNA-1
chr7_2 five_prime_UTR 52827669 52827991 52827669 ID=Msa1062200-mRNA-1:five_prime_utr;Parent=Msa1062200-mRNA-1
chr7_2 CDS 52827992 52828045 52827992 ID=Msa1062200-mRNA-1:cds;Parent=Msa1062200-mRNA-1
chr7_2 CDS 52828211 52829218 52828211 ID=Msa1062200-mRNA-1:cds;Parent=Msa1062200-mRNA-1
chr7_2 three_prime_UTR 52829219 52829468 52829219 ID=Msa1062200-mRNA-1:three_prime_utr;Parent=Msa1062200-mRNA-1
Gene Sequence

>Msa1062200

ATGGTTTATACTTCTCTCCCACCATATATGGATCCAGCCAACTGGCATCAACAGCAACAAAATCATCAAGTGGCCAACACTAGTGTCAACAGTCCTCTACTTATTCCACCACCACAGCCTCAACCATCGAACCTGACACCATCGCAACCTCATGGAGGCTCGATCAGACCAGGTTCGATGGCAGATAGGGCAAGGATGGCAAACATACCTATGCAAGAACCATCACAAAAATGTCCAAGGTGTGATTCCACCAACACAAAGTTTTGCTACTACAACAACTATAGTCTCTCGCAGCCACGCCACTTCTGCAAGGCTTGTCGAAGGTATTGGACAAAAGGTGGTGCCCTTAGAAGTGTCCCGGTTGGAGGTGGTTGTCGAAGAAACAAAAGGTCTAAATCAAGCAGCAACAACACCTCCAAGTCGCCGGCAAGCTCAGACCGCCAAACTAGCTCTGCAAACAACTCTCCTGCGGTACTCAGTTCCCCAACGCCACCACCGATGAGATTCATGGCTCCTTTGCATCATCTAGGTGATCACCTAAGTGAAATAGGACTAAACTATGGTTTTTCTACTCCAATGGGAGGTGTTGGAGACTTAAATTTCCATATCGGAAGCTCTTTAGGTGGAGGCGTTGGTAACGGTGGTGTCAACGGTGGTGGTTCTACTTCGATTTTACCTGTTGGCAATTTTGAGCAATGGAGGATGCCACAAACTCATCAATTTCCCTTCTTGTCAACTTTAGAAGCTTCTTCTTCACATGGATTGTTGTATCCATTTGAAGGTGGTGGTAGCGGTGGTGGTGCTAATGATCAATCCCATGCGTATGGTGGTGTGTCTAAGGTATTATCAAATAATTCTAGTGTGAAAATGGAAGAGAATCAATCTAGACAATTCTTGGGAATGATCAACAAAAACAACATCAATAATAATAATAATAATCCTAATAGTGAACAATATTGGAATGCTTCTGCTGGTGGTGGTGCTACTAATTCACCTTGGACAGATCTTTCTACAGCTTATAACACTTCTTCAGCTACTACAAATTCCAACTATAGGACATAA
Protein sequence

>Msa1062200

MVYTSLPPYMDPANWHQQQQNHQVANTSVNSPLLIPPPQPQPSNLTPSQPHGGSIRPGSMADRARMANIPMQEPSQKCPRCDSTNTKFCYYNNYSLSQPRHFCKACRRYWTKGGALRSVPVGGGCRRNKRSKSSSNNTSKSPASSDRQTSSANNSPAVLSSPTPPPMRFMAPLHHLGDHLSEIGLNYGFSTPMGGVGDLNFHIGSSLGGGVGNGGVNGGGSTSILPVGNFEQWRMPQTHQFPFLSTLEASSSHGLLYPFEGGGSGGGANDQSHAYGGVSKVLSNNSSVKMEENQSRQFLGMINKNNINNNNNNPNSEQYWNASAGGGATNSPWTDLSTAYNTSSATTNSNYRT*