AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1063160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1063160 MtrunA17_Chr7g0242301 94.462 325 12 1 29 347 1 325 0.0 630
Msa1063160 MtrunA17_Chr7g0242291 78.261 368 41 3 19 347 26 393 0.0 555
Msa1063160 MtrunA17_Chr3g0125911 44.142 367 164 4 19 347 15 378 3.41e-108 321
Msa1063160 MtrunA17_Chr3g0125961 43.869 367 165 4 19 347 15 378 6.91e-108 320
Msa1063160 MtrunA17_Chr3g0125941 43.869 367 165 4 19 347 16 379 3.03e-107 318
Msa1063160 MtrunA17_Chr7g0262421 45.504 367 159 5 19 347 16 379 1.69e-106 317
Msa1063160 MtrunA17_Chr6g0478081 45.902 366 155 5 19 347 16 375 3.87e-105 313
Msa1063160 MtrunA17_Chr1g0183131 44.142 367 164 4 19 347 14 377 7.03e-104 310
Msa1063160 MtrunA17_Chr5g0440521 44.986 369 160 6 19 347 24 389 1.52e-101 304
Msa1063160 MtrunA17_Chr3g0132351 46.505 372 152 7 19 347 22 389 1.89e-95 289
Msa1063160 MtrunA17_Chr3g0118441 42.779 367 167 6 19 345 19 382 9.68e-91 276
Msa1063160 MtrunA17_Chr4g0021211 39.255 349 169 6 24 335 44 386 4.69e-76 239
Msa1063160 MtrunA17_Chr5g0419681 39.143 350 169 6 24 335 19 362 3.15e-75 236
Msa1063160 MtrunA17_Chr3g0118431 43.223 273 113 5 106 338 19 289 6.56e-60 194
Msa1063160 MtrunA17_Chr8g0385221 28.767 365 209 10 19 339 58 415 1.20e-28 115
Msa1063160 MtrunA17_Chr6g0474141 27.246 334 175 10 41 333 41 347 2.13e-20 90.9
Msa1063160 MtrunA17_Chr5g0411871 26.331 338 176 15 41 338 54 358 5.63e-12 66.2
Msa1063160 MtrunA17_Chr1g0157021 41.463 82 46 2 41 121 38 118 9.55e-12 65.5
Msa1063160 MtrunA17_Chr5g0411931 26.235 324 190 13 41 336 39 341 8.42e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1063160 AT1G32780.1 57.713 376 110 3 19 347 15 388 1.76e-150 429
Msa1063160 AT1G64710.1 55.556 369 122 4 19 347 14 380 1.15e-145 416
Msa1063160 AT1G64710.2 55.153 359 119 4 29 347 1 357 1.31e-141 405
Msa1063160 AT1G64710.3 52.597 308 104 4 80 347 6 311 5.83e-109 321
Msa1063160 AT1G77120.1 45.504 367 159 5 19 347 14 377 6.04e-108 320
Msa1063160 AT5G24760.1 45.777 367 154 5 19 347 20 379 2.51e-106 317
Msa1063160 AT5G43940.1 46.027 365 156 5 19 345 14 375 7.06e-106 315
Msa1063160 AT5G43940.2 46.027 365 156 5 19 345 26 387 8.06e-106 315
Msa1063160 AT5G24760.2 45.098 357 151 5 29 347 1 350 4.73e-102 305
Msa1063160 AT5G24760.3 45.098 357 151 5 29 347 1 350 4.73e-102 305
Msa1063160 AT1G22430.2 47.425 369 148 6 19 345 20 384 8.80e-101 303
Msa1063160 AT1G22430.1 47.425 369 148 6 19 345 20 384 8.80e-101 303
Msa1063160 AT4G22110.2 45.777 367 157 3 19 345 21 385 1.31e-100 302
Msa1063160 AT4G22110.1 45.777 367 157 3 19 345 21 385 1.31e-100 302
Msa1063160 AT1G22440.1 44.475 362 159 3 24 345 23 382 1.26e-96 292
Msa1063160 AT5G42250.1 42.473 372 166 7 19 347 23 389 1.92e-96 291
Msa1063160 AT1G22430.4 52.321 237 104 2 19 248 20 254 2.54e-78 242
Msa1063160 AT1G22430.5 52.321 237 104 2 19 248 20 254 2.54e-78 242
Msa1063160 AT1G22430.3 52.321 237 104 2 19 248 20 254 3.38e-78 242
Msa1063160 AT4G22110.3 51.271 236 106 2 19 247 21 254 1.69e-76 237
Msa1063160 AT5G24760.4 45.492 244 97 3 137 347 25 265 3.67e-63 202
Msa1063160 AT5G63620.1 26.648 364 218 9 19 339 60 417 5.32e-28 113
Msa1063160 AT5G63620.2 26.722 363 219 9 19 339 60 417 1.29e-27 112
Msa1063160 AT5G63620.3 30.488 246 155 5 19 252 60 301 6.31e-26 106
Msa1063160 AT5G51970.1 27.876 226 136 5 27 247 29 232 2.40e-15 76.6
Msa1063160 AT5G51970.2 27.876 226 136 5 27 247 29 232 2.40e-15 76.6
Msa1063160 AT4G37970.1 25.352 355 210 15 12 338 17 344 9.33e-13 68.9

Find 174 sgRNAs with CRISPR-Local

Find 681 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAGTCAGTCTTTGGTTTC+AGG 0.106831 7_2:+54709132 None:intergenic
TCTTAGAACGTTCAAATTTC+CGG 0.226370 7_2:-54716162 None:intergenic
CAACAGAACCATTTATTTAC+AGG 0.228411 7_2:-54717022 None:intergenic
TTGTCTTGTGAAAGGAAATA+TGG 0.240136 7_2:-54709182 None:intergenic
GGTTCTTCTGTAGCAATCTT+TGG 0.244410 7_2:+54719210 Msa1063160:CDS
GGTTCATCTGTAGCAGTCTT+TGG 0.253356 7_2:+54715408 Msa1063160:five_prime_UTR
GTCTGTGATTCCTAATGTTT+TGG 0.256129 7_2:-54715966 None:intergenic
ACCGGCTTCTCTTCATCCTT+TGG 0.265989 7_2:-54715998 None:intergenic
CCTGTGATATTGAATTTGTC+TGG 0.282039 7_2:-54715850 None:intergenic
TTACCTATGGTTAATTTCTC+AGG 0.282612 7_2:-54719952 None:intergenic
TGTACAACCTCCTCAGAAAA+TGG 0.292390 7_2:+54709461 Msa1063160:five_prime_UTR
TGTACAACCTCCTCAGAAAA+TGG 0.292390 7_2:+54718278 Msa1063160:CDS
CCGGCTTCTCTTCATCCTTT+GGG 0.310139 7_2:-54715997 None:intergenic
TGGGGATTGACTGTACTATT+AGG 0.318616 7_2:+54716509 Msa1063160:five_prime_UTR
CAGACTTCTCTTCATCCTTT+GGG 0.321271 7_2:-54720216 None:intergenic
ATCTTTGGTTTAGGTGCAAT+AGG 0.335612 7_2:+54719225 Msa1063160:CDS
CTGTGGCAAGATTAGGCAAT+TGG 0.337052 7_2:-54716631 None:intergenic
GTGGGTGAAACTATTGAATA+AGG 0.341220 7_2:-54709155 None:intergenic
ACAGACTTCTCTTCATCCTT+TGG 0.342998 7_2:-54720217 None:intergenic
GTGCTCAAAGCCAAAACATT+AGG 0.343563 7_2:+54715956 Msa1063160:intron
GTCTGTGATTCCCATTGATT+TGG 0.343881 7_2:-54720185 None:intergenic
AGAATCGAAGGTTCGGTGTT+TGG 0.348245 7_2:+54716590 Msa1063160:five_prime_UTR
TGTTATTGTATTAGCCTTTG+TGG 0.352510 7_2:+54718215 Msa1063160:intron
GAACTCAGATATCATAAAAC+TGG 0.355587 7_2:-54716907 None:intergenic
ACTGTACTATTAGGAATTCA+TGG 0.362082 7_2:+54716518 Msa1063160:five_prime_UTR
TCTGTAGCAGTCTTTGGTTT+AGG 0.363626 7_2:+54715414 Msa1063160:five_prime_UTR
GAGTACACAGTGGTGGATTC+AGG 0.368035 7_2:+54718978 Msa1063160:CDS
AGAATTGAAGGTTCAGTGTT+TGG 0.369832 7_2:+54720881 Msa1063160:CDS
TTTCTTACCCGGAAGCTTCA+TGG 0.375060 7_2:-54709706 None:intergenic
TAAATAAATGGTTCTGTTGA+AGG 0.376917 7_2:+54717026 Msa1063160:five_prime_UTR
TGCATTACCAAGGGTTCTCC+TGG 0.377736 7_2:-54718246 None:intergenic
TTCCCTTTGTCTCACTTAAG+TGG 0.380570 7_2:-54709247 None:intergenic
TCTGTAGCAATCTTTGGTTT+AGG 0.386862 7_2:+54719216 Msa1063160:CDS
ACCAACATGTGTGAGAAATC+TGG 0.393979 7_2:+54710246 Msa1063160:five_prime_UTR
GCCTTCGATCTCTTGATTGC+CGG 0.400639 7_2:+54716809 Msa1063160:five_prime_UTR
AACACATCTCAATGACTTCC+CGG 0.402408 7_2:-54716828 None:intergenic
TGTGACAAATGGAAGTATAA+AGG 0.408101 7_2:-54718317 None:intergenic
GTCTTTGGTTTAGGTGCAGT+TGG 0.410563 7_2:+54715423 Msa1063160:five_prime_UTR
AAGACATCTCAGTGATTTCC+CGG 0.413377 7_2:-54721116 None:intergenic
TTTGATGGTCGCAGAATTGA+AGG 0.418406 7_2:+54720869 Msa1063160:CDS
GTAGGATTGTGGAGAGTGTA+GGG 0.426096 7_2:+54718742 Msa1063160:intron
CGACCATCAAAGAGCTCCAT+TGG 0.426556 7_2:-54720857 None:intergenic
CACCCAATGGAGCTCTTTGA+TGG 0.430013 7_2:+54720854 Msa1063160:CDS
GCCTTTGTGGCAAATGCTCC+AGG 0.432392 7_2:+54718228 Msa1063160:intron
AAGTGGTGCTAATATTCAAC+GGG 0.436433 7_2:+54718796 Msa1063160:CDS
GTAGGGTTGTGGAAAGTGTA+GGG 0.436703 7_2:+54710133 Msa1063160:intron
TGTGACAAATGGAAGTATAT+AGG 0.438272 7_2:-54709500 None:intergenic
AGAATTTGTTCCACTACAAA+GGG 0.439017 7_2:-54709438 None:intergenic
CACCCGATGGAGCTCTTTGA+TGG 0.443825 7_2:+54716563 Msa1063160:five_prime_UTR
TCCACTACAAAGGGTTCTCC+TGG 0.444615 7_2:-54709429 None:intergenic
TCTTTGGTTTAGGTGCAATA+GGG 0.448731 7_2:+54719226 Msa1063160:CDS
ACTGAGATCGGTGTGACAAA+TGG 0.452624 7_2:-54718328 None:intergenic
CCTTCGATCTCTTGATTGCC+GGG 0.458053 7_2:+54716810 Msa1063160:five_prime_UTR
ATGCATTCTGTGGCAAGATT+AGG 0.465959 7_2:-54716638 None:intergenic
ATGCATTCTGTGGCAAGATT+AGG 0.465959 7_2:-54720929 None:intergenic
TGTAGGGTTGTGGAAAGTGT+AGG 0.467119 7_2:+54710132 Msa1063160:intron
ACCAACATGTGTGAGAAGTA+TGG 0.472304 7_2:+54718855 Msa1063160:CDS
TGTAGGATTGTGGAGAGTGT+AGG 0.472961 7_2:+54718741 Msa1063160:intron
GTAGTGACATAAATACATAA+TGG 0.476829 7_2:-54717070 None:intergenic
TTGGGGATTGACTGTACTAC+TGG 0.477884 7_2:+54720799 Msa1063160:CDS
TCTAATTCTTGTCTTGTGAA+AGG 0.478412 7_2:-54709190 None:intergenic
TGAAGAGAAGTCTGTAGTTG+AGG 0.479946 7_2:+54720225 Msa1063160:CDS
AAAGAGCTCCATCGGGTGGA+TGG 0.480463 7_2:-54716558 None:intergenic
GCCGCTGTGGCACATGGTCC+AGG 0.483241 7_2:+54709411 Msa1063160:intron
GGCTTTGTTTATCTCGTCAA+AGG 0.484785 7_2:-54721077 None:intergenic
GGGTGGATGGGAAGCAACTT+TGG 0.487545 7_2:-54716545 None:intergenic
CGACCATCAAAGAGCTCCAT+CGG 0.489430 7_2:-54716566 None:intergenic
TGTACTCAAAGCCAAATCAA+TGG 0.490646 7_2:+54720174 Msa1063160:intron
GTACTCAAAGCCAAATCAAT+GGG 0.491339 7_2:+54720175 Msa1063160:intron
CTTAGTTGTGGAGTTTCCAC+AGG 0.494020 7_2:+54710447 Msa1063160:five_prime_UTR
CTTAGTTGTGGAGTTTCCAC+AGG 0.494020 7_2:+54719056 Msa1063160:CDS
AAGAATTTGTTCCACTACAA+AGG 0.494916 7_2:-54709439 None:intergenic
CTACCTACCTTTGCAAGTAA+TGG 0.503735 7_2:-54709273 None:intergenic
ACTGAGATCAGTGTGACAAA+TGG 0.504154 7_2:-54709511 None:intergenic
AAACTCACCTTGCTTAGTTG+TGG 0.504966 7_2:+54710435 Msa1063160:five_prime_UTR
AAACTCACCTTGCTTAGTTG+TGG 0.504966 7_2:+54719044 Msa1063160:CDS
GCCTTTCCAACCACTGAGAT+CGG 0.504977 7_2:-54718340 None:intergenic
CTGTGATATTGAATTTGTCT+GGG 0.506515 7_2:-54715849 None:intergenic
TTGCCACAGAATGCATGAAA+GGG 0.506811 7_2:+54716645 Msa1063160:five_prime_UTR
TTGCCACAGAATGCATGAAA+GGG 0.506811 7_2:+54720936 Msa1063160:CDS
AGCCTCAGCGTGCTTATCCT+CGG 0.511654 7_2:+54709675 Msa1063160:five_prime_UTR
TCAGTGTTTGGAGGTTTCAA+AGG 0.517297 7_2:+54720893 Msa1063160:CDS
CAATCAAGAGATCGAAGGCT+TGG 0.518444 7_2:-54716805 None:intergenic
AAGAATTTGTTGCATTACCA+AGG 0.521237 7_2:-54718256 None:intergenic
AGACAAGAATTAGAAGAAGA+TGG 0.521518 7_2:+54709199 Msa1063160:five_prime_UTR
GGCTTGGTTTATCTCGTCAA+AGG 0.521643 7_2:-54716789 None:intergenic
AACTTGGGTCAGGTTGCAGA+AGG 0.521661 7_2:+54715781 Msa1063160:intron
CCCAAAGGATGAAGAGAAGC+CGG 0.524199 7_2:+54715997 Msa1063160:five_prime_UTR
ACCATACTTCTCACACATGT+TGG 0.526918 7_2:-54718856 None:intergenic
GGGTGGAGAGGAAGTAACTT+TGG 0.528694 7_2:-54720836 None:intergenic
CTTGGGTCAGGTTGCAGAAG+GGG 0.532137 7_2:+54715783 Msa1063160:intron
TACCTATGGTTAATTTCTCA+GGG 0.532270 7_2:-54719951 None:intergenic
GCTTGGTTTATCTCGTCAAA+GGG 0.532618 7_2:-54716788 None:intergenic
CTTGCCACAGAATGCATGAA+AGG 0.536757 7_2:+54716644 Msa1063160:five_prime_UTR
CTTGCCACAGAATGCATGAA+AGG 0.536757 7_2:+54720935 Msa1063160:CDS
ATCGAAGGTTCGGTGTTTGG+AGG 0.537067 7_2:+54716593 Msa1063160:five_prime_UTR
ATGTAGGAATTGGAGCTGCT+TGG 0.539264 7_2:+54719166 Msa1063160:intron
GCAACTTCAGAAGTTGCAAA+TGG 0.539401 7_2:+54709221 Msa1063160:five_prime_UTR
TCGGTGTTTGGAGGTTTCAA+AGG 0.540300 7_2:+54716602 Msa1063160:five_prime_UTR
TCCTGGAGCATTTGCCACAA+AGG 0.548305 7_2:-54718229 None:intergenic
ATTTGTATAATACAGGGTTG+GGG 0.550195 7_2:+54720782 Msa1063160:intron
GACCATCAAAGAGCTCCATT+GGG 0.550654 7_2:-54720856 None:intergenic
TGGTCGCAGAATCGAAGGTT+CGG 0.551474 7_2:+54716583 Msa1063160:five_prime_UTR
ACCGATCTCAGTGGTTGGAA+AGG 0.553026 7_2:+54718339 Msa1063160:CDS
AAATGCTCCAGGAGAACCCT+TGG 0.553640 7_2:+54718239 Msa1063160:CDS
ATTGAAGGTTCAGTGTTTGG+AGG 0.554319 7_2:+54720884 Msa1063160:CDS
AAGAGCTCCATCGGGTGGAT+GGG 0.555389 7_2:-54716557 None:intergenic
GCTTTGTTTATCTCGTCAAA+GGG 0.557660 7_2:-54721076 None:intergenic
TACCCCTTTCATGCATTCTG+TGG 0.558507 7_2:-54716648 None:intergenic
TACCCCTTTCATGCATTCTG+TGG 0.558507 7_2:-54720939 None:intergenic
TAGCTTCTTGTCTGTTCATG+AGG 0.559308 7_2:+54716187 Msa1063160:five_prime_UTR
CCAGACAAATTCAATATCAC+AGG 0.560172 7_2:+54715850 Msa1063160:five_prime_UTR
ATGAAGAAGTTAATGTGTGA+TGG 0.560258 7_2:+54710279 Msa1063160:five_prime_UTR
GTCACACTGATCTCAGTGGT+TGG 0.560551 7_2:+54709517 Msa1063160:five_prime_UTR
GACCATCAAAGAGCTCCATC+GGG 0.563032 7_2:-54716565 None:intergenic
ACTGATCTCAGTGGTTGGAA+AGG 0.564267 7_2:+54709522 Msa1063160:five_prime_UTR
AAGTTGAAGAGTTCAAGAAA+TGG 0.565220 7_2:-54718950 None:intergenic
AGAATTTGTTGCATTACCAA+GGG 0.565520 7_2:-54718255 None:intergenic
CCCGGCAATCAAAAGATCGA+AGG 0.567254 7_2:-54721098 None:intergenic
TTTGATGGTCGCAGAATCGA+AGG 0.568190 7_2:+54716578 Msa1063160:five_prime_UTR
CTAATATTCAACGGGGAGTG+TGG 0.570878 7_2:+54718804 Msa1063160:CDS
GGAAAGACCATTACTTGCAA+AGG 0.572082 7_2:+54709266 Msa1063160:five_prime_UTR
TCCAGATTTCTCACACATGT+TGG 0.574195 7_2:-54710247 None:intergenic
GTCACACCGATCTCAGTGGT+TGG 0.575089 7_2:+54718334 Msa1063160:CDS
TTAATATTCAATGGTGAGTG+TGG 0.576472 7_2:+54710195 Msa1063160:five_prime_UTR
GCAGAAGGGGCACGAGCCAG+AGG 0.577664 7_2:+54715796 Msa1063160:five_prime_UTR
ATTGTGGAGAGTGTAGGGGA+AGG 0.579424 7_2:+54718747 Msa1063160:CDS
ATGTAGGAATAGGAGCTGCT+TGG 0.579482 7_2:+54715364 Msa1063160:intron
CATCAAAGAGCTCCATTGGG+TGG 0.582699 7_2:-54720853 None:intergenic
CAACCACTTAAGTGAGACAA+AGG 0.588680 7_2:+54709244 Msa1063160:five_prime_UTR
AAGAGCTCCATTGGGTGGAG+AGG 0.590631 7_2:-54720848 None:intergenic
TGAAAGGAAATATGGATAGG+TGG 0.592899 7_2:-54709174 None:intergenic
GTTACTTCCTCTCCACCCAA+TGG 0.594383 7_2:+54720841 Msa1063160:CDS
CTTGAAAGAAAATGACAAAG+TGG 0.597044 7_2:+54710170 Msa1063160:five_prime_UTR
GTTGCTTCCCATCCACCCGA+TGG 0.597342 7_2:+54716550 Msa1063160:five_prime_UTR
GAAAGGAAATATGGATAGGT+GGG 0.597590 7_2:-54709173 None:intergenic
GCACTCGGAGCACGAGCCAG+AGG 0.599482 7_2:+54719898 Msa1063160:CDS
ATCAGAGAAATGACTGAAGG+AGG 0.600126 7_2:+54716116 Msa1063160:five_prime_UTR
GTTGTGGAAAGTGTAGGGGA+AGG 0.603042 7_2:+54710138 Msa1063160:five_prime_UTR
TAGGATTGTGGAGAGTGTAG+GGG 0.604363 7_2:+54718743 Msa1063160:intron
TAGGGTTGTGGAAAGTGTAG+GGG 0.604382 7_2:+54710134 Msa1063160:intron
TGGGGATTGACTGTACTACT+GGG 0.605656 7_2:+54720800 Msa1063160:CDS
AACCACTTAAGTGAGACAAA+GGG 0.605703 7_2:+54709245 Msa1063160:five_prime_UTR
ATAATCAGAGAAATGACTGA+AGG 0.605943 7_2:+54716113 Msa1063160:five_prime_UTR
CATCAAAGAGCTCCATCGGG+TGG 0.612111 7_2:-54716562 None:intergenic
ACTTGGGTCAGGTTGCAGAA+GGG 0.614461 7_2:+54715782 Msa1063160:intron
TCCAGGAGAACCCTTTGTAG+TGG 0.614887 7_2:+54709428 Msa1063160:five_prime_UTR
CTTAAAAGAAAATGACAAAG+TGG 0.617928 7_2:+54718779 Msa1063160:CDS
GGAAACTCCACAACTAAGCA+AGG 0.622794 7_2:-54710442 None:intergenic
GGAAACTCCACAACTAAGCA+AGG 0.622794 7_2:-54719051 None:intergenic
AATACTGCTAATGTGCATGC+TGG 0.623738 7_2:+54715387 Msa1063160:five_prime_UTR
ATTTGTCACACTGATCTCAG+TGG 0.626164 7_2:+54709513 Msa1063160:five_prime_UTR
AAAGTGGTGCTAATATTCAA+CGG 0.627186 7_2:+54718795 Msa1063160:CDS
CACAGACTTCATAAACCCAA+AGG 0.632938 7_2:+54715982 Msa1063160:five_prime_UTR
CACAGACTTCATAAACCCAA+AGG 0.632938 7_2:+54720201 Msa1063160:CDS
CCCGGCAATCAAGAGATCGA+AGG 0.641111 7_2:-54716810 None:intergenic
TTTCACTGAGTACACAGTGG+TGG 0.644223 7_2:+54718971 Msa1063160:CDS
AATAATGCTAATGTGCATGC+TGG 0.646212 7_2:+54719189 Msa1063160:CDS
TGAAGAGAAGCCGGTATACG+AGG 0.647999 7_2:+54716006 Msa1063160:five_prime_UTR
AACCCTGAGAAATTAACCAT+AGG 0.650437 7_2:+54719949 Msa1063160:CDS
ATTTGTCACACCGATCTCAG+TGG 0.650521 7_2:+54718330 Msa1063160:CDS
TTGTGAAAGGAAATATGGAT+AGG 0.654318 7_2:-54709177 None:intergenic
TGCCACAGAATGCATGAAAG+GGG 0.655237 7_2:+54716646 Msa1063160:five_prime_UTR
TGCCACAGAATGCATGAAAG+GGG 0.655237 7_2:+54720937 Msa1063160:CDS
TCTCAGTGGTTGGAAAGGAG+AGG 0.655831 7_2:+54709527 Msa1063160:five_prime_UTR
TCTCAGTGGTTGGAAAGGCG+AGG 0.664563 7_2:+54718344 Msa1063160:CDS
ATGAAGAGACTAATGTGTGA+TGG 0.689352 7_2:+54718888 Msa1063160:CDS
ATCCGAGGATAAGCACGCTG+AGG 0.694644 7_2:-54709677 None:intergenic
ATCCGAGGAAAAGCACGTTG+AGG 0.697016 7_2:-54718476 None:intergenic
ACAACCTCCTCAGAAAATGG+AGG 0.703186 7_2:+54709464 Msa1063160:five_prime_UTR
ACAACCTCCTCAGAAAATGG+AGG 0.703186 7_2:+54718281 Msa1063160:CDS
TCCTGGACCATGTGCCACAG+CGG 0.706133 7_2:-54709412 None:intergenic
AACTTTCACTGAGTACACAG+TGG 0.735925 7_2:+54718968 Msa1063160:CDS
AGTGGTGCTAATATTCAACG+GGG 0.821851 7_2:+54718797 Msa1063160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAATTAGAAACTATA+TGG - chr7_2:54709604-54709623 None:intergenic 10.0%
!! TATATAAAAATTCAATTTGA+TGG + chr7_2:54709876-54709895 Msa1063160:intron 10.0%
!! AACTATAATAATTAATAACA+TGG - chr7_2:54711320-54711339 None:intergenic 10.0%
!! ATTATAGTTATAATTAAGAT+TGG + chr7_2:54711331-54711350 Msa1063160:intron 10.0%
!!! ATTATTTTCTTTTATTTTGA+AGG - chr7_2:54711726-54711745 None:intergenic 10.0%
!! TATCTTTCAAAAAAAAAAAA+TGG - chr7_2:54712028-54712047 None:intergenic 10.0%
!! GATTATAATTTCTTAATAAA+TGG + chr7_2:54712560-54712579 Msa1063160:intron 10.0%
!!! TCTTAAAAGTTTTTTTTTAA+GGG + chr7_2:54712583-54712602 Msa1063160:intron 10.0%
!! TTTGTTTATGAAAAAAAAAA+CGG - chr7_2:54712731-54712750 None:intergenic 10.0%
!!! CGTAATATTTTTTTTTTTTA+TGG + chr7_2:54713879-54713898 Msa1063160:intron 10.0%
!! AAGATAATGTTAATAATTAA+TGG + chr7_2:54713989-54714008 Msa1063160:intron 10.0%
!! AAAAAATCGTAAAAAAAATT+CGG - chr7_2:54714800-54714819 None:intergenic 10.0%
!!! ATTAAAACTGAAAAATTTTT+GGG - chr7_2:54714823-54714842 None:intergenic 10.0%
!!! AATTAAAACTGAAAAATTTT+TGG - chr7_2:54714824-54714843 None:intergenic 10.0%
!! ATTAAAAGTCAAAAAAAATT+CGG - chr7_2:54714860-54714879 None:intergenic 10.0%
!!! TGAAAAAAAAAATTTTTTGA+AGG + chr7_2:54714925-54714944 Msa1063160:intron 10.0%
!!! TATATTCTTCTATTATTTTT+AGG + chr7_2:54716730-54716749 Msa1063160:intron 10.0%
!! ATGTAAAAATGAAAAAAATA+TGG + chr7_2:54717096-54717115 Msa1063160:CDS 10.0%
!!! AGAATTTTATAAATTTGTTT+TGG - chr7_2:54719839-54719858 None:intergenic 10.0%
!! AAACAAATTTATAAAATTCT+TGG + chr7_2:54719839-54719858 Msa1063160:intron 10.0%
!! NNNATCTTTAGTGAAAAATT+TGG - chr7_2:54710804-54710823 None:intergenic 15.0%
!! AGAAAAATTATTTATCATAG+AGG - chr7_2:54711041-54711060 None:intergenic 15.0%
!! AAAGTGAAAAATAATGATTA+TGG - chr7_2:54711184-54711203 None:intergenic 15.0%
!! GGAAATAATTATAACTAAAA+TGG - chr7_2:54711829-54711848 None:intergenic 15.0%
!!! ATCTTTAAAAAAAAAGTAGA+TGG - chr7_2:54711850-54711869 None:intergenic 15.0%
!!! TTTTTTTTTTGAAAGATATG+AGG + chr7_2:54712030-54712049 Msa1063160:intron 15.0%
!! TTTCATTGAAGATTAAATAA+TGG + chr7_2:54712117-54712136 Msa1063160:intron 15.0%
!! ATTATAGTAAATGAAGATAT+GGG - chr7_2:54712310-54712329 None:intergenic 15.0%
!! TATTATAGTAAATGAAGATA+TGG - chr7_2:54712311-54712330 None:intergenic 15.0%
!! TATCTTCATTTACTATAATA+AGG + chr7_2:54712311-54712330 Msa1063160:intron 15.0%
!! ATCTTCATTTACTATAATAA+GGG + chr7_2:54712312-54712331 Msa1063160:intron 15.0%
!!! GTCTTAAAAGTTTTTTTTTA+AGG + chr7_2:54712582-54712601 Msa1063160:intron 15.0%
!!! TATTAGATTTTGCTAATTTT+TGG + chr7_2:54712625-54712644 Msa1063160:intron 15.0%
!!! ATTTGATATAATTTTTTTGC+AGG + chr7_2:54712667-54712686 Msa1063160:intron 15.0%
!!! TCCACAATTTTTTTTTTTTA+CGG - chr7_2:54713143-54713162 None:intergenic 15.0%
!!! AAGAAAAAACTAATTTTCAA+TGG + chr7_2:54713546-54713565 Msa1063160:intron 15.0%
!!! TTTAAGATAATATACTCATA+TGG - chr7_2:54713963-54713982 None:intergenic 15.0%
!! ATATGAGTATATTATCTTAA+AGG + chr7_2:54713962-54713981 Msa1063160:intron 15.0%
!!! TAAAACTTTTAAAACTTTCA+AGG - chr7_2:54714313-54714332 None:intergenic 15.0%
!! TTAGAGTTGTATTTATATAA+TGG + chr7_2:54714482-54714501 Msa1063160:intron 15.0%
!!! AAACTGAATTTTTTTTTTGA+AGG - chr7_2:54714773-54714792 None:intergenic 15.0%
!! AAAAATCGTAAAAAAAATTC+GGG - chr7_2:54714799-54714818 None:intergenic 15.0%
!!! GATTTTTATGAATTTGTTTT+TGG - chr7_2:54715736-54715755 None:intergenic 15.0%
!! AAACAAATTCATAAAAATCT+TGG + chr7_2:54715737-54715756 Msa1063160:intron 15.0%
!!! TTGTATAAAGTTGATTTTTA+GGG - chr7_2:54717285-54717304 None:intergenic 15.0%
!!! TTTGTATAAAGTTGATTTTT+AGG - chr7_2:54717286-54717305 None:intergenic 15.0%
!!! CTTACTTTGTTTTTTTTTAT+TGG + chr7_2:54717702-54717721 Msa1063160:intron 15.0%
!!! CATATAGTTTCTTATTATTT+TGG + chr7_2:54718415-54718434 Msa1063160:intron 15.0%
!! ATAAAATAAGTATTATCCTA+AGG - chr7_2:54718651-54718670 None:intergenic 15.0%
!!! ATAGAACATATTATTTTTGT+AGG + chr7_2:54718724-54718743 Msa1063160:intron 15.0%
!! TCAAAAACTAAAATAAATGT+AGG + chr7_2:54719150-54719169 Msa1063160:intron 15.0%
!! AAAAAATTAGCTACATTATA+TGG - chr7_2:54719281-54719300 None:intergenic 15.0%
!! TAACAACACTATTAAAATAA+AGG + chr7_2:54719589-54719608 Msa1063160:intron 15.0%
!! AACAACACTATTAAAATAAA+GGG + chr7_2:54719590-54719609 Msa1063160:intron 15.0%
!!! TATATTCTTCTGTTATTTTT+AGG + chr7_2:54721018-54721037 Msa1063160:intron 15.0%
!! ATTAACAAAAGGAAATTTGT+TGG - chr7_2:54709741-54709760 None:intergenic 20.0%
!!! TTTTGTTAATTAGAAATACG+CGG + chr7_2:54709751-54709770 Msa1063160:intron 20.0%
!! CTTGTATTGTAAAGTTAAAT+TGG - chr7_2:54709835-54709854 None:intergenic 20.0%
!! TAAAAATGAACATGATCATA+AGG - chr7_2:54709858-54709877 None:intergenic 20.0%
!! CATAATTAAGTCAACATTAT+TGG - chr7_2:54710081-54710100 None:intergenic 20.0%
!!! AAAGTGGTTTTAATATTCAA+TGG + chr7_2:54710186-54710205 Msa1063160:five_prime_UTR 20.0%
!! GTGTTCAAAAAATGAAAAAT+GGG - chr7_2:54710336-54710355 None:intergenic 20.0%
!! AGTGTTCAAAAAATGAAAAA+TGG - chr7_2:54710337-54710356 None:intergenic 20.0%
!!! ACTATGTAATTTTTATTGAG+TGG + chr7_2:54710534-54710553 Msa1063160:intron 20.0%
!! ATTAAAATTAACGACGTAAT+TGG - chr7_2:54710948-54710967 None:intergenic 20.0%
!! CGATTATGACATTTATAATA+GGG - chr7_2:54711067-54711086 None:intergenic 20.0%
!! GATAAGTGTATATTATTAGA+TGG - chr7_2:54711158-54711177 None:intergenic 20.0%
!! TTGTTCAAAAAAACATAACA+TGG - chr7_2:54711289-54711308 None:intergenic 20.0%
!!! ATGATATCGATTTTTGTTTT+AGG - chr7_2:54711641-54711660 None:intergenic 20.0%
!! GTAGAGATATATTATGAATT+AGG + chr7_2:54711974-54711993 Msa1063160:intron 20.0%
!!! TATTATGAATTAGGATTTTG+CGG + chr7_2:54711983-54712002 Msa1063160:intron 20.0%
!! ACAACATTAAATGTTTGATT+GGG - chr7_2:54712225-54712244 None:intergenic 20.0%
!! GAACATGGAATAAATAAAAT+AGG + chr7_2:54712451-54712470 Msa1063160:intron 20.0%
!!! AAGTTTTTTTTTAAGGGAAA+TGG + chr7_2:54712589-54712608 Msa1063160:intron 20.0%
!!! CTTGTAGTTTTTATAATTAG+TGG - chr7_2:54712845-54712864 None:intergenic 20.0%
!! TGAAGTTCAAACAATTATAA+TGG + chr7_2:54713083-54713102 Msa1063160:intron 20.0%
!! ATGGTAATTATAAATTTCAG+AGG + chr7_2:54713102-54713121 Msa1063160:intron 20.0%
!! ACCGTAAAAAAAAAAAATTG+TGG + chr7_2:54713139-54713158 Msa1063160:intron 20.0%
!!! ATAATTGTTTTTCAATTACG+TGG - chr7_2:54713406-54713425 None:intergenic 20.0%
!!! TGGAATAAAATATGTTTTTG+AGG + chr7_2:54713566-54713585 Msa1063160:intron 20.0%
!!! ATTCTTAGTCTTTTTTTTAG+TGG - chr7_2:54713632-54713651 None:intergenic 20.0%
!! TGTACTATTAAACCTAAATT+GGG - chr7_2:54714220-54714239 None:intergenic 20.0%
!! ATGTACTATTAAACCTAAAT+TGG - chr7_2:54714221-54714240 None:intergenic 20.0%
!! TTTAATAGTACATCTCAATA+GGG + chr7_2:54714228-54714247 Msa1063160:intron 20.0%
!! TAAATGATTAAACTTTGCAA+GGG - chr7_2:54715045-54715064 None:intergenic 20.0%
!! TTAAATGATTAAACTTTGCA+AGG - chr7_2:54715044-54715063 None:intergenic 20.0%
!! TTAAATGATTAAACTTTGCA+AGG + chr7_2:54715044-54715063 Msa1063160:intron 20.0%
!! TAAATGATTAAACTTTGCAA+GGG + chr7_2:54715045-54715064 Msa1063160:intron 20.0%
!! TGTCATTAATATAAAGACTA+AGG - chr7_2:54715148-54715167 None:intergenic 20.0%
!! TCATAGGTTCATATATTATT+AGG - chr7_2:54715525-54715544 None:intergenic 20.0%
!! TTTCAAATTATTAACTGTGT+CGG - chr7_2:54715596-54715615 None:intergenic 20.0%
!!! TGTAAAATTTTGTATAATGC+AGG + chr7_2:54716484-54716503 Msa1063160:intron 20.0%
!!! GTAAAATTTTGTATAATGCA+GGG + chr7_2:54716485-54716504 Msa1063160:intron 20.0%
!!! TTTTAGGGAAACATTTAAAA+TGG - chr7_2:54717270-54717289 None:intergenic 20.0%
!!! AATTATGTTGATGTTTTCTT+AGG - chr7_2:54717316-54717335 None:intergenic 20.0%
!!! AATGGCTATTCTATTTTTTT+TGG + chr7_2:54717412-54717431 Msa1063160:intron 20.0%
!! AAAGTGTAAAATGTGTAAAA+TGG - chr7_2:54717456-54717475 None:intergenic 20.0%
!!! TTTTACACATTTTACACTTT+AGG + chr7_2:54717456-54717475 Msa1063160:intron 20.0%
!!! ATATTATTTTTGTAGGATTG+TGG + chr7_2:54718731-54718750 Msa1063160:intron 20.0%
!! ACTAAAATAAATGTAGGAAT+TGG + chr7_2:54719156-54719175 Msa1063160:intron 20.0%
!! TAATTGTATTAGAGTTATCA+AGG - chr7_2:54719640-54719659 None:intergenic 20.0%
!!! TCTTTTTTATTACAAGAGTT+AGG + chr7_2:54720053-54720072 Msa1063160:intron 20.0%
!!! AGCAGTATTCTTATTTATAT+TGG + chr7_2:54720625-54720644 Msa1063160:intron 20.0%
!!! TTTTGTGATAAGTTTTGAAT+TGG - chr7_2:54720703-54720722 None:intergenic 20.0%
!! ATGTCAAATTTGTATAATAC+AGG + chr7_2:54720775-54720794 Msa1063160:intron 20.0%
!! TGTCAAATTTGTATAATACA+GGG + chr7_2:54720776-54720795 Msa1063160:intron 20.0%
!! GGTATAAAAATTTTCTTACC+CGG - chr7_2:54709720-54709739 None:intergenic 25.0%
!! GCGTATTTCTAATTAACAAA+AGG - chr7_2:54709752-54709771 None:intergenic 25.0%
! TTGTTCGATGAAGATTATAT+AGG + chr7_2:54709793-54709812 Msa1063160:intron 25.0%
! CAACTATTCAATTCATCAAA+TGG + chr7_2:54709910-54709929 Msa1063160:intron 25.0%
! TACAAAAAAATCAAGGTCAT+TGG - chr7_2:54710116-54710135 None:intergenic 25.0%
!!! AATGACCTTGATTTTTTTGT+AGG + chr7_2:54710115-54710134 Msa1063160:intron 25.0%
!!! ATGACCTTGATTTTTTTGTA+GGG + chr7_2:54710116-54710135 Msa1063160:intron 25.0%
!! AGTAGATTTTCTTCAATAGA+TGG + chr7_2:54710306-54710325 Msa1063160:five_prime_UTR 25.0%
!! TTCAACTTTTAGTGAGTATA+CGG + chr7_2:54710356-54710375 Msa1063160:five_prime_UTR 25.0%
!! AAATTTTCTCAAAAACTCCA+TGG - chr7_2:54710495-54710514 None:intergenic 25.0%
!!! CAAGTTTGTTATAAGTTAGT+TGG - chr7_2:54710702-54710721 None:intergenic 25.0%
! NNNNNCATCATCAAAGTCAA+TGG + chr7_2:54710916-54710935 Msa1063160:intron 25.0%
!!! TACGTCGTTAATTTTAATCT+AGG + chr7_2:54710950-54710969 Msa1063160:intron 25.0%
! GCGATTATGACATTTATAAT+AGG - chr7_2:54711068-54711087 None:intergenic 25.0%
!!! TTTTAATTACCTGATTGGTT+TGG - chr7_2:54711507-54711526 None:intergenic 25.0%
!!! TCGTTTTTTAATTACCTGAT+TGG - chr7_2:54711512-54711531 None:intergenic 25.0%
!! AGGAATTAAAGTACCTAAAA+TGG - chr7_2:54712058-54712077 None:intergenic 25.0%
!!! TTTTAGGTACTTTAATTCCT+CGG + chr7_2:54712058-54712077 Msa1063160:intron 25.0%
! CACAACATTAAATGTTTGAT+TGG - chr7_2:54712226-54712245 None:intergenic 25.0%
! AGATACACTAAAAAAAAGTG+AGG + chr7_2:54712422-54712441 Msa1063160:intron 25.0%
!!! ATATGTTTTTGAGGAATTCA+AGG + chr7_2:54713575-54713594 Msa1063160:intron 25.0%
!!! TATGTTTTTGAGGAATTCAA+GGG + chr7_2:54713576-54713595 Msa1063160:intron 25.0%
!!! GAATATGTCATTTTTTGAGT+CGG + chr7_2:54713936-54713955 Msa1063160:intron 25.0%
!! TATAAGTTCCTTGTTTACAA+AGG + chr7_2:54714027-54714046 Msa1063160:intron 25.0%
!! ATAAGTTCCTTGTTTACAAA+GGG + chr7_2:54714028-54714047 Msa1063160:intron 25.0%
! GTTTAATAGTACATCTCAAT+AGG + chr7_2:54714227-54714246 Msa1063160:intron 25.0%
! TTAATAGTACATCTCAATAG+GGG + chr7_2:54714229-54714248 Msa1063160:intron 25.0%
!!! AAATGCTGACTAAGTTTTTT+TGG - chr7_2:54714458-54714477 None:intergenic 25.0%
! TATATGTTGAAAAATGCAAG+AGG + chr7_2:54714514-54714533 Msa1063160:intron 25.0%
!!! ATTTTGTTAATTTGATGACG+TGG - chr7_2:54714706-54714725 None:intergenic 25.0%
! ACGTCATCAAATTAACAAAA+TGG + chr7_2:54714705-54714724 Msa1063160:intron 25.0%
! GAAAAAAAAAAATAAGCCAG+GGG - chr7_2:54714751-54714770 None:intergenic 25.0%
! GGAAAAAAAAAAATAAGCCA+GGG - chr7_2:54714752-54714771 None:intergenic 25.0%
! AGGAAAAAAAAAAATAAGCC+AGG - chr7_2:54714753-54714772 None:intergenic 25.0%
! ATATAAAGACTAAGGCTTAA+TGG - chr7_2:54715140-54715159 None:intergenic 25.0%
! GTTGAAACACAAATAAATGT+AGG + chr7_2:54715348-54715367 Msa1063160:intron 25.0%
! ACACAAATAAATGTAGGAAT+AGG + chr7_2:54715354-54715373 Msa1063160:intron 25.0%
!!! TAGGTATTGAATAAGATCAA+AGG - chr7_2:54715506-54715525 None:intergenic 25.0%
! CCAAGTTTGATATAAATTCA+GGG - chr7_2:54715768-54715787 None:intergenic 25.0%
! CCTGAATTTATATCAAACTT+GGG + chr7_2:54715766-54715785 Msa1063160:intron 25.0%
!! CTAATTTGATTTCAAGAGTT+AGG + chr7_2:54715889-54715908 Msa1063160:intron 25.0%
! TACATTTATGTTCAAGTCTT+TGG - chr7_2:54715928-54715947 None:intergenic 25.0%
!!! TTTTTGCGATAAGATTTGTT+TGG - chr7_2:54716427-54716446 None:intergenic 25.0%
!! TTTTGCATCCTGTAAATAAA+TGG + chr7_2:54717014-54717033 Msa1063160:five_prime_UTR 25.0%
!! TAAATAAATGGTTCTGTTGA+AGG + chr7_2:54717026-54717045 Msa1063160:five_prime_UTR 25.0%
! GTAGTGACATAAATACATAA+TGG - chr7_2:54717073-54717092 None:intergenic 25.0%
!! TGAAAAAAATATGGTTTGCA+AGG + chr7_2:54717105-54717124 Msa1063160:CDS 25.0%
!! GAAAAAAATATGGTTTGCAA+GGG + chr7_2:54717106-54717125 Msa1063160:CDS 25.0%
!! GAAACATTTAAAATGGTGAT+GGG - chr7_2:54717263-54717282 None:intergenic 25.0%
! AAATAGAATAGCCATTTATG+AGG - chr7_2:54717408-54717427 None:intergenic 25.0%
! TGTAAAATGTGTAAAATGGA+TGG - chr7_2:54717452-54717471 None:intergenic 25.0%
! TTGTTTGTTTATTGGATTGT+AGG - chr7_2:54717495-54717514 None:intergenic 25.0%
! CAAAGTAAGATGATACTTAT+GGG - chr7_2:54717691-54717710 None:intergenic 25.0%
! ACAAAGTAAGATGATACTTA+TGG - chr7_2:54717692-54717711 None:intergenic 25.0%
! TTACCAGAATTAAAAGAAGA+TGG + chr7_2:54717840-54717859 Msa1063160:intron 25.0%
! TCATATCTCACTTAATTTAG+TGG + chr7_2:54718021-54718040 Msa1063160:intron 25.0%
! AATTGATTAATGTAATCGAG+AGG - chr7_2:54718125-54718144 None:intergenic 25.0%
! TTGTGTATTTCACTAATGAA+AGG - chr7_2:54718550-54718569 None:intergenic 25.0%
! ATTAGTGAAATACACAATTG+CGG + chr7_2:54718553-54718572 Msa1063160:intron 25.0%
!!! TTTGTACTTTGAAGTTGATT+TGG - chr7_2:54718628-54718647 None:intergenic 25.0%
!! ATTATTTGGTGAATTCATAG+TGG + chr7_2:54718674-54718693 Msa1063160:intron 25.0%
! CTTAAAAGAAAATGACAAAG+TGG + chr7_2:54718779-54718798 Msa1063160:CDS 25.0%
! TGCAACAACACTATTAAAAA+GGG + chr7_2:54719522-54719541 Msa1063160:intron 25.0%
! TTGTTATCACAAACAAATCA+TGG + chr7_2:54719696-54719715 Msa1063160:intron 25.0%
! TTGTTATCACAAACAAATCA+TGG + chr7_2:54719696-54719715 Msa1063160:intron 25.0%
! CTCTTGTAATAAAAAAGACT+TGG - chr7_2:54720051-54720070 None:intergenic 25.0%
!!! CAAATTTTAAAGTCGCATTA+GGG - chr7_2:54720123-54720142 None:intergenic 25.0%
!!! GTATTTTAGGAAGTTTAGTT+GGG + chr7_2:54720577-54720596 Msa1063160:intron 25.0%
! AAATTTGTATAATACAGGGT+TGG + chr7_2:54720780-54720799 Msa1063160:intron 25.0%
! AATTTGTATAATACAGGGTT+GGG + chr7_2:54720781-54720800 Msa1063160:intron 25.0%
!!! TTATTTTTAGGCGATAAAGT+TGG + chr7_2:54721030-54721049 Msa1063160:intron 25.0%
TTGTGAAAGGAAATATGGAT+AGG - chr7_2:54709180-54709199 None:intergenic 30.0%
TTGTCTTGTGAAAGGAAATA+TGG - chr7_2:54709185-54709204 None:intergenic 30.0%
TCTAATTCTTGTCTTGTGAA+AGG - chr7_2:54709193-54709212 None:intergenic 30.0%
AGACAAGAATTAGAAGAAGA+TGG + chr7_2:54709199-54709218 Msa1063160:five_prime_UTR 30.0%
AAGAAAGTGATGAGAAAGTT+TGG - chr7_2:54709347-54709366 None:intergenic 30.0%
! AGAATTTGTTCCACTACAAA+GGG - chr7_2:54709441-54709460 None:intergenic 30.0%
! AAGAATTTGTTCCACTACAA+AGG - chr7_2:54709442-54709461 None:intergenic 30.0%
! TGTGACAAATGGAAGTATAT+AGG - chr7_2:54709503-54709522 None:intergenic 30.0%
ACAACCCTACAAAAAAATCA+AGG - chr7_2:54710123-54710142 None:intergenic 30.0%
!!! TTGATTTTTTTGTAGGGTTG+TGG + chr7_2:54710122-54710141 Msa1063160:intron 30.0%
CTTGAAAGAAAATGACAAAG+TGG + chr7_2:54710170-54710189 Msa1063160:five_prime_UTR 30.0%
TTAATATTCAATGGTGAGTG+TGG + chr7_2:54710195-54710214 Msa1063160:five_prime_UTR 30.0%
ATGAAGAAGTTAATGTGTGA+TGG + chr7_2:54710279-54710298 Msa1063160:five_prime_UTR 30.0%
CCATGGTTATAAAGAAAAGA+AGG - chr7_2:54710478-54710497 None:intergenic 30.0%
! CCTTCTTTTCTTTATAACCA+TGG + chr7_2:54710475-54710494 Msa1063160:intron 30.0%
TATACCTCACCGTATATAAA+GGG - chr7_2:54710602-54710621 None:intergenic 30.0%
ACTTGATCGTAGAATTTACT+TGG - chr7_2:54710650-54710669 None:intergenic 30.0%
!!! TTTTTTAGCAAAGGAGTGTT+AGG - chr7_2:54710774-54710793 None:intergenic 30.0%
!!! GGTTGATCATTTTTTAGCAA+AGG - chr7_2:54710783-54710802 None:intergenic 30.0%
ATCAAATGCCATGATAATTG+TGG + chr7_2:54711219-54711238 Msa1063160:intron 30.0%
TCAAATGCCATGATAATTGT+GGG + chr7_2:54711220-54711239 Msa1063160:intron 30.0%
!!! ACCTGTTTTTATAATGGTGT+AGG + chr7_2:54711416-54711435 Msa1063160:intron 30.0%
TCCTACACCATTATAAAAAC+AGG - chr7_2:54711420-54711439 None:intergenic 30.0%
! TTTTATAATGGTGTAGGACA+TGG + chr7_2:54711422-54711441 Msa1063160:intron 30.0%
TTCAGTTATCGTATTCCAAA+GGG + chr7_2:54711445-54711464 Msa1063160:intron 30.0%
AAACTTCCAAACAAAGTCTT+AGG - chr7_2:54711546-54711565 None:intergenic 30.0%
! TAAGACTTTGTTTGGAAGTT+TGG + chr7_2:54711545-54711564 Msa1063160:intron 30.0%
ATAACTAAAATGGTAGATCG+AGG - chr7_2:54711819-54711838 None:intergenic 30.0%
AAAAAAAAATGGAGCCTCAT+AGG - chr7_2:54712017-54712036 None:intergenic 30.0%
! GAGAGTATAGTGATATAGAA+AGG + chr7_2:54712336-54712355 Msa1063160:intron 30.0%
TATGAGAGAACTTAGATGTT+AGG - chr7_2:54713033-54713052 None:intergenic 30.0%
!!! ATTTTTTTTACCCCCTATGA+CGG + chr7_2:54713163-54713182 Msa1063160:intron 30.0%
TGACTAACAGAGGAAATTAA+CGG + chr7_2:54713241-54713260 Msa1063160:intron 30.0%
TGACTAACGTTATGCAATTT+CGG + chr7_2:54713275-54713294 Msa1063160:intron 30.0%
! CAAGTCAGTTTCTGAAAATT+TGG + chr7_2:54713697-54713716 Msa1063160:intron 30.0%
!!! GTTTTATTTCCCCTCTTTTA+TGG - chr7_2:54713760-54713779 None:intergenic 30.0%
CATCTCTTTCAACAAAACAT+TGG - chr7_2:54714098-54714117 None:intergenic 30.0%
AACAATAAATATGGGAGATG+TGG - chr7_2:54714122-54714141 None:intergenic 30.0%
!! TGCTATACCGTAATTTTTAG+CGG + chr7_2:54714189-54714208 Msa1063160:intron 30.0%
GGTTTATCCGCTAAAAATTA+CGG - chr7_2:54714199-54714218 None:intergenic 30.0%
! GCAAACTTTTCACACAAAAA+AGG - chr7_2:54714341-54714360 None:intergenic 30.0%
!! ATGATTAGTCTTTGGCTTAA+TGG + chr7_2:54714557-54714576 Msa1063160:intron 30.0%
AAGGAAAAAAAAATTAGCCC+AGG + chr7_2:54714944-54714963 Msa1063160:intron 30.0%
AGGAAAAAAAAATTAGCCCA+GGG + chr7_2:54714945-54714964 Msa1063160:intron 30.0%
ATATATGAACCTATGAAGCA+CGG + chr7_2:54715529-54715548 Msa1063160:intron 30.0%
CCCTGAATTTATATCAAACT+TGG + chr7_2:54715765-54715784 Msa1063160:intron 30.0%
CCCAAGTTTGATATAAATTC+AGG - chr7_2:54715769-54715788 None:intergenic 30.0%
ATTTATATCAAACTTGGGTC+AGG + chr7_2:54715771-54715790 Msa1063160:intron 30.0%
!!! TATTATTTTTGAAGCACCTC+TGG - chr7_2:54715815-54715834 None:intergenic 30.0%
!! AGAGGTGCTTCAAAAATAAT+AGG + chr7_2:54715814-54715833 Msa1063160:five_prime_UTR 30.0%
TGCTTCAAAAATAATAGGTG+TGG + chr7_2:54715819-54715838 Msa1063160:five_prime_UTR 30.0%
CTGTGATATTGAATTTGTCT+GGG - chr7_2:54715852-54715871 None:intergenic 30.0%
ATAATCAGAGAAATGACTGA+AGG + chr7_2:54716113-54716132 Msa1063160:five_prime_UTR 30.0%
!!! GACTATAGTTTTGAATGTAC+CGG + chr7_2:54716143-54716162 Msa1063160:five_prime_UTR 30.0%
TCTTAGAACGTTCAAATTTC+CGG - chr7_2:54716165-54716184 None:intergenic 30.0%
AATATATGCGAACGAACTAT+TGG - chr7_2:54716240-54716259 None:intergenic 30.0%
GTCTCATTTAAAGGATTCTT+TGG + chr7_2:54716339-54716358 Msa1063160:intron 30.0%
! AATTTTGTATAATGCAGGGT+TGG + chr7_2:54716489-54716508 Msa1063160:intron 30.0%
! ATTTTGTATAATGCAGGGTT+GGG + chr7_2:54716490-54716509 Msa1063160:intron 30.0%
ACTGTACTATTAGGAATTCA+TGG + chr7_2:54716518-54716537 Msa1063160:five_prime_UTR 30.0%
!!! TTATTTTTAGGCGATAAAGC+TGG + chr7_2:54716742-54716761 Msa1063160:intron 30.0%
GAACTCAGATATCATAAAAC+TGG - chr7_2:54716910-54716929 None:intergenic 30.0%
CAACAGAACCATTTATTTAC+AGG - chr7_2:54717025-54717044 None:intergenic 30.0%
! GGAAACATTTAAAATGGTGA+TGG - chr7_2:54717264-54717283 None:intergenic 30.0%
TATTGGATTGTAGGAATATG+AGG - chr7_2:54717486-54717505 None:intergenic 30.0%
CTCTCTACTTGTTTGTTTAT+TGG - chr7_2:54717503-54717522 None:intergenic 30.0%
CAATAAACAAACAAGTAGAG+AGG + chr7_2:54717501-54717520 Msa1063160:intron 30.0%
! AACTTTTCCCTCTCTTTTTA+TGG + chr7_2:54717573-54717592 Msa1063160:intron 30.0%
! AAGATGATACTTATGGGTTA+TGG - chr7_2:54717685-54717704 None:intergenic 30.0%
ATGAATTGCATGCAACAAAA+GGG - chr7_2:54717750-54717769 None:intergenic 30.0%
AATGAATTGCATGCAACAAA+AGG - chr7_2:54717751-54717770 None:intergenic 30.0%
! ATTCATTCAAGTAGGTCTTT+TGG + chr7_2:54717764-54717783 Msa1063160:intron 30.0%
TGGATGAAACTAATGAACAA+AGG - chr7_2:54717797-54717816 None:intergenic 30.0%
!! TTGCCATCTTCTTTTAATTC+TGG - chr7_2:54717846-54717865 None:intergenic 30.0%
!! GATATGACTTATTGATTCAG+TGG - chr7_2:54718003-54718022 None:intergenic 30.0%
! CACAAGTTAGTTTCTACTAT+TGG - chr7_2:54718061-54718080 None:intergenic 30.0%
!! TGTTATTGTATTAGCCTTTG+TGG + chr7_2:54718215-54718234 Msa1063160:intron 30.0%
!! AGAATTTGTTGCATTACCAA+GGG - chr7_2:54718258-54718277 None:intergenic 30.0%
!! AAGAATTTGTTGCATTACCA+AGG - chr7_2:54718259-54718278 None:intergenic 30.0%
! TGTGACAAATGGAAGTATAA+AGG - chr7_2:54718320-54718339 None:intergenic 30.0%
CACTAATGAAAGGAAATTCA+TGG - chr7_2:54718540-54718559 None:intergenic 30.0%
AACTTCAAAGTACAAACCTT+AGG + chr7_2:54718632-54718651 Msa1063160:intron 30.0%
! AAAGTGGTGCTAATATTCAA+CGG + chr7_2:54718795-54718814 Msa1063160:CDS 30.0%
AGTAGATTCTCTACAATAGA+TGG + chr7_2:54718915-54718934 Msa1063160:intron 30.0%
AAGTTGAAGAGTTCAAGAAA+TGG - chr7_2:54718953-54718972 None:intergenic 30.0%
CTGCAACAACACTATTAAAA+AGG + chr7_2:54719521-54719540 Msa1063160:intron 30.0%
GTAGACTTTCATTCAGAAAT+TGG - chr7_2:54719548-54719567 None:intergenic 30.0%
TGTTACAGCAGAAAAACAAA+TGG - chr7_2:54719574-54719593 None:intergenic 30.0%
AGGAAATAACAACTGTTACA+TGG - chr7_2:54719620-54719639 None:intergenic 30.0%
ACCCTGAATTTATATTGAAC+TGG + chr7_2:54719866-54719885 Msa1063160:intron 30.0%
CCCAGTTCAATATAAATTCA+GGG - chr7_2:54719870-54719889 None:intergenic 30.0%
CCCTGAATTTATATTGAACT+GGG + chr7_2:54719867-54719886 Msa1063160:intron 30.0%
CCTGAATTTATATTGAACTG+GGG + chr7_2:54719868-54719887 Msa1063160:intron 30.0%
!!! TATTATTTTTGAAGCACCTC+TGG - chr7_2:54715815-54715834 None:intergenic 30.0%
!! AGAGGTGCTTCAAAAATAAT+AGG + chr7_2:54715814-54715833 Msa1063160:five_prime_UTR 30.0%
TACCTATGGTTAATTTCTCA+GGG - chr7_2:54719954-54719973 None:intergenic 30.0%
TTACCTATGGTTAATTTCTC+AGG - chr7_2:54719955-54719974 None:intergenic 30.0%
CGTAAAAAGTAAGTTACCTA+TGG - chr7_2:54719968-54719987 None:intergenic 30.0%
!!! GCAAATTTTAAAGTCGCATT+AGG - chr7_2:54720124-54720143 None:intergenic 30.0%
! GTATTCTTTTGTGAAATGCA+AGG - chr7_2:54720265-54720284 None:intergenic 30.0%
! GTATTTTCGGTATTTCAGTT+GGG - chr7_2:54720467-54720486 None:intergenic 30.0%
!! GGTATTTTAGGAAGTTTAGT+TGG + chr7_2:54720576-54720595 Msa1063160:intron 30.0%
TTCATCCTTATATGAAAGCA+TGG + chr7_2:54720675-54720694 Msa1063160:intron 30.0%
ATTTGTATAATACAGGGTTG+GGG + chr7_2:54720782-54720801 Msa1063160:intron 30.0%
!! TTATGCAATGAGTTTTAGTG+TGG + chr7_2:54720988-54721007 Msa1063160:intron 30.0%
! GTTTTTGAACAGTACTTACA+CGG + chr7_2:54721252-54721271 Msa1063160:three_prime_UTR 30.0%
GTGGGTGAAACTATTGAATA+AGG - chr7_2:54709158-54709177 None:intergenic 35.0%
GAAAGGAAATATGGATAGGT+GGG - chr7_2:54709176-54709195 None:intergenic 35.0%
TGAAAGGAAATATGGATAGG+TGG - chr7_2:54709177-54709196 None:intergenic 35.0%
AACCACTTAAGTGAGACAAA+GGG + chr7_2:54709245-54709264 Msa1063160:five_prime_UTR 35.0%
! ATTCTAACCTCCATTTTCTG+AGG - chr7_2:54709474-54709493 None:intergenic 35.0%
! AACTTTTAGTGAGTATACGG+TGG + chr7_2:54710359-54710378 Msa1063160:five_prime_UTR 35.0%
CGCAATAACCCCTTTATATA+CGG + chr7_2:54710590-54710609 Msa1063160:intron 35.0%
ATACCTCACCGTATATAAAG+GGG - chr7_2:54710601-54710620 None:intergenic 35.0%
GTATACCTCACCGTATATAA+AGG - chr7_2:54710603-54710622 None:intergenic 35.0%
CCATTATAAAAACAGGTAGC+AGG - chr7_2:54711413-54711432 None:intergenic 35.0%
!!! CCTGCTACCTGTTTTTATAA+TGG + chr7_2:54711410-54711429 Msa1063160:intron 35.0%
GTTCAGTTATCGTATTCCAA+AGG + chr7_2:54711444-54711463 Msa1063160:intron 35.0%
AATCTTACACCAAACCAATC+AGG + chr7_2:54711495-54711514 Msa1063160:intron 35.0%
TCATCTCCTAAGACTTTGTT+TGG + chr7_2:54711537-54711556 Msa1063160:intron 35.0%
! ACTTTGTTTGGAAGTTTGGA+AGG + chr7_2:54711549-54711568 Msa1063160:intron 35.0%
TGGGCTAAAAAAAATCGAGA+AGG + chr7_2:54711580-54711599 Msa1063160:intron 35.0%
GGGCTAAAAAAAATCGAGAA+GGG + chr7_2:54711581-54711600 Msa1063160:intron 35.0%
TTTGCGAGTTTAAAGGAGAA+GGG - chr7_2:54711613-54711632 None:intergenic 35.0%
! AAGATATGAGGCTCCATTTT+AGG + chr7_2:54712042-54712061 Msa1063160:intron 35.0%
! TCTTCCTTTTCCTTTTCGTA+TGG + chr7_2:54712171-54712190 Msa1063160:intron 35.0%
! CTTCCTTTTCCTTTTCGTAT+GGG + chr7_2:54712172-54712191 Msa1063160:intron 35.0%
AATCCCATACGAAAAGGAAA+AGG - chr7_2:54712178-54712197 None:intergenic 35.0%
! TTTCCTTTTCGTATGGGATT+TGG + chr7_2:54712178-54712197 Msa1063160:intron 35.0%
! TTCCTTTTCGTATGGGATTT+GGG + chr7_2:54712179-54712198 Msa1063160:intron 35.0%
! TTTGAAGGGAGCATAAGATA+AGG - chr7_2:54712265-54712284 None:intergenic 35.0%
TTGACCGAAAAAGGTTTGAA+GGG - chr7_2:54712279-54712298 None:intergenic 35.0%
ATTGACCGAAAAAGGTTTGA+AGG - chr7_2:54712280-54712299 None:intergenic 35.0%
GTTTCGTTATTGACCGAAAA+AGG - chr7_2:54712288-54712307 None:intergenic 35.0%
AAAGTGAGGTAAAGAGAACA+TGG + chr7_2:54712436-54712455 Msa1063160:intron 35.0%
!! TCTCTTGTAAGGATGGATTA+AGG - chr7_2:54712780-54712799 None:intergenic 35.0%
AAGATTTCGACTCTCTTGTA+AGG - chr7_2:54712791-54712810 None:intergenic 35.0%
GAACTTCAAGTCAAACATGA+CGG - chr7_2:54713071-54713090 None:intergenic 35.0%
!!! TTTTTTTTACCCCCTATGAC+GGG + chr7_2:54713164-54713183 Msa1063160:intron 35.0%
TAACAGAGGAAATTAACGGA+GGG + chr7_2:54713245-54713264 Msa1063160:intron 35.0%
GACTAACGTTATGCAATTTC+GGG + chr7_2:54713276-54713295 Msa1063160:intron 35.0%
ACTAACGTTATGCAATTTCG+GGG + chr7_2:54713277-54713296 Msa1063160:intron 35.0%
ACAAATCTGCAAAGAACACA+TGG + chr7_2:54713447-54713466 Msa1063160:intron 35.0%
GGGAATATAATAGCAAGACT+TGG + chr7_2:54713596-54713615 Msa1063160:intron 35.0%
CTCTTAAACATGAGAGGAAT+AGG - chr7_2:54713674-54713693 None:intergenic 35.0%
! GTCAGTTTCTGAAAATTTGG+TGG + chr7_2:54713700-54713719 Msa1063160:intron 35.0%
TCTAGGTTGTCCATAAAAGA+GGG + chr7_2:54713747-54713766 Msa1063160:intron 35.0%
! AATAGACTTTTCTTCTCTGC+AGG - chr7_2:54713855-54713874 None:intergenic 35.0%
! TTAGCGGATAAACCCAATTT+AGG + chr7_2:54714205-54714224 Msa1063160:intron 35.0%
TATCTCTCTCTCTCTTAACT+TGG + chr7_2:54714272-54714291 Msa1063160:intron 35.0%
!!! GCTGACTAAGTTTTTTTGGA+AGG - chr7_2:54714454-54714473 None:intergenic 35.0%
!! TTGCCTGAATGATTAGTCTT+TGG + chr7_2:54714549-54714568 Msa1063160:intron 35.0%
AAGCCAAAGACTAATCATTC+AGG - chr7_2:54714555-54714574 None:intergenic 35.0%
AATAGGCGGCGTTTAAAAAT+TGG + chr7_2:54714597-54714616 Msa1063160:intron 35.0%
GGAAAAAAAAATTAGCCCAG+GGG + chr7_2:54714946-54714965 Msa1063160:intron 35.0%
AATAGGCGGCGTTTAAAAAT+TGG - chr7_2:54714597-54714616 None:intergenic 35.0%
! TCTTATTTGCGTTTGAACCT+AGG + chr7_2:54715193-54715212 Msa1063160:intron 35.0%
CTTATTTGCGTTTGAACCTA+GGG + chr7_2:54715194-54715213 Msa1063160:intron 35.0%
GTTAAGAAGTTTGATACCCT+AGG - chr7_2:54715213-54715232 None:intergenic 35.0%
CTCAGTGTAATTACAAGTGT+CGG + chr7_2:54715630-54715649 Msa1063160:intron 35.0%
!!! TTTTGGTTCATATCTACGCA+CGG - chr7_2:54715719-54715738 None:intergenic 35.0%
CCTGTGATATTGAATTTGTC+TGG - chr7_2:54715853-54715872 None:intergenic 35.0%
CCAGACAAATTCAATATCAC+AGG + chr7_2:54715850-54715869 Msa1063160:five_prime_UTR 35.0%
! GTCTGTGATTCCTAATGTTT+TGG - chr7_2:54715969-54715988 None:intergenic 35.0%
GAAAAACTAACCTCGTATAC+CGG - chr7_2:54716019-54716038 None:intergenic 35.0%
! AGATTAGTTGGTTGTTTGAC+TGG - chr7_2:54716289-54716308 None:intergenic 35.0%
AGTCAAACAACCAACTAATC+TGG + chr7_2:54716288-54716307 Msa1063160:intron 35.0%
! GTCATCCTTATTTGAAAGCA+AGG + chr7_2:54716394-54716413 Msa1063160:intron 35.0%
TGGATCCTTGCTTTCAAATA+AGG - chr7_2:54716402-54716421 None:intergenic 35.0%
! GCGATAAGATTTGTTTGGAT+TGG - chr7_2:54716422-54716441 None:intergenic 35.0%
! TTTTGTATAATGCAGGGTTG+GGG + chr7_2:54716491-54716510 Msa1063160:intron 35.0%
! TTGCATGTGCAAAGTTGTTT+TGG + chr7_2:54717229-54717248 Msa1063160:intron 35.0%
AAGTTGCAACACCTCATAAA+TGG + chr7_2:54717394-54717413 Msa1063160:intron 35.0%
TAAACAAACAAGTAGAGAGG+AGG + chr7_2:54717504-54717523 Msa1063160:intron 35.0%
AAGTAGAGAGGAGGAAAATA+AGG + chr7_2:54717513-54717532 Msa1063160:intron 35.0%
AAAAGAGAGGGAAAAGTTTG+TGG - chr7_2:54717571-54717590 None:intergenic 35.0%
! TTCCCTCTCTTTTTATGGTA+AGG + chr7_2:54717578-54717597 Msa1063160:intron 35.0%
GTCCTTACCATAAAAAGAGA+GGG - chr7_2:54717583-54717602 None:intergenic 35.0%
AGTCCTTACCATAAAAAGAG+AGG - chr7_2:54717584-54717603 None:intergenic 35.0%
TGCATGCAATTCATTCAAGT+AGG + chr7_2:54717756-54717775 Msa1063160:intron 35.0%
TGTGAAAACAAATCGATCGT+TGG - chr7_2:54717817-54717836 None:intergenic 35.0%
AACTTCAAAAAGTGAGACCA+AGG + chr7_2:54717864-54717883 Msa1063160:intron 35.0%
ACTTCAAAAAGTGAGACCAA+GGG + chr7_2:54717865-54717884 Msa1063160:intron 35.0%
GGAAAGATCATTACTTGCAA+AGG + chr7_2:54717886-54717905 Msa1063160:intron 35.0%
AGATCATTACTTGCAAAGGT+AGG + chr7_2:54717890-54717909 Msa1063160:intron 35.0%
TCTCACTTAATTTAGTGGTG+TGG + chr7_2:54718026-54718045 Msa1063160:intron 35.0%
! ATTCTAACCTCCATTTTCTG+AGG - chr7_2:54709474-54709493 None:intergenic 35.0%
!! ATTTTTGGACATGAAGCTTC+CGG + chr7_2:54718497-54718516 Msa1063160:CDS 35.0%
! AAGTGGTGCTAATATTCAAC+GGG + chr7_2:54718796-54718815 Msa1063160:CDS 35.0%
ATGAAGAGACTAATGTGTGA+TGG + chr7_2:54718888-54718907 Msa1063160:CDS 35.0%
!!! TAAGCAAGGTGAGTTTTTTG+AGG - chr7_2:54710431-54710450 None:intergenic 35.0%
AATAATGCTAATGTGCATGC+TGG + chr7_2:54719189-54719208 Msa1063160:CDS 35.0%
! TCTGTAGCAATCTTTGGTTT+AGG + chr7_2:54719216-54719235 Msa1063160:CDS 35.0%
! ATCTTTGGTTTAGGTGCAAT+AGG + chr7_2:54719225-54719244 Msa1063160:CDS 35.0%
! TCTTTGGTTTAGGTGCAATA+GGG + chr7_2:54719226-54719245 Msa1063160:CDS 35.0%
! CTGTAAGATTCCTCATTTTC+TGG + chr7_2:54719253-54719272 Msa1063160:intron 35.0%
TTATATGGCACCAGAAAATG+AGG - chr7_2:54719266-54719285 None:intergenic 35.0%
CCCCAGTTCAATATAAATTC+AGG - chr7_2:54719871-54719890 None:intergenic 35.0%
TGCTTCAAAAATAATAGGCG+TGG + chr7_2:54719921-54719940 Msa1063160:CDS 35.0%
AACCCTGAGAAATTAACCAT+AGG + chr7_2:54719949-54719968 Msa1063160:CDS 35.0%
!!! TTTTAAAGTCGCATTAGGGA+AGG - chr7_2:54720119-54720138 None:intergenic 35.0%
TGTACTCAAAGCCAAATCAA+TGG + chr7_2:54720174-54720193 Msa1063160:intron 35.0%
GTACTCAAAGCCAAATCAAT+GGG + chr7_2:54720175-54720194 Msa1063160:intron 35.0%
AGAGAATCAGAGAAATGACT+GGG + chr7_2:54720317-54720336 Msa1063160:intron 35.0%
!!! CACTACAGTTTTGAATGTAC+AGG + chr7_2:54720349-54720368 Msa1063160:intron 35.0%
! GGTATTTTCGGTATTTCAGT+TGG - chr7_2:54720468-54720487 None:intergenic 35.0%
TGGATCCATGCTTTCATATA+AGG - chr7_2:54720683-54720702 None:intergenic 35.0%
AGAATTGAAGGTTCAGTGTT+TGG + chr7_2:54720881-54720900 Msa1063160:CDS 35.0%
!! GCTTTGTTTATCTCGTCAAA+GGG - chr7_2:54721079-54721098 None:intergenic 35.0%
GCAACTTCAGAAGTTGCAAA+TGG + chr7_2:54709221-54709240 Msa1063160:five_prime_UTR 40.0%
CAACCACTTAAGTGAGACAA+AGG + chr7_2:54709244-54709263 Msa1063160:five_prime_UTR 40.0%
TTCCCTTTGTCTCACTTAAG+TGG - chr7_2:54709250-54709269 None:intergenic 40.0%
GGAAAGACCATTACTTGCAA+AGG + chr7_2:54709266-54709285 Msa1063160:five_prime_UTR 40.0%
AGACCATTACTTGCAAAGGT+AGG + chr7_2:54709270-54709289 Msa1063160:intron 40.0%
CTACCTACCTTTGCAAGTAA+TGG - chr7_2:54709276-54709295 None:intergenic 40.0%
TGTACAACCTCCTCAGAAAA+TGG + chr7_2:54709461-54709480 Msa1063160:five_prime_UTR 40.0%
ACTGAGATCAGTGTGACAAA+TGG - chr7_2:54709514-54709533 None:intergenic 40.0%
ATTTGTCACACTGATCTCAG+TGG + chr7_2:54709513-54709532 Msa1063160:five_prime_UTR 40.0%
!!! ATTTTTGGCCATGAAGCTTC+CGG + chr7_2:54709698-54709717 Msa1063160:five_prime_UTR 40.0%
ACCAACATGTGTGAGAAATC+TGG + chr7_2:54710246-54710265 Msa1063160:five_prime_UTR 40.0%
TCCAGATTTCTCACACATGT+TGG - chr7_2:54710250-54710269 None:intergenic 40.0%
! TTTTAGTGAGTATACGGTGG+TGG + chr7_2:54710362-54710381 Msa1063160:five_prime_UTR 40.0%
AAACTCACCTTGCTTAGTTG+TGG + chr7_2:54710435-54710454 Msa1063160:five_prime_UTR 40.0%
AGAAAAGAAGGACTTACCTG+TGG - chr7_2:54710466-54710485 None:intergenic 40.0%
TAACCCCTTTATATACGGTG+AGG + chr7_2:54710595-54710614 Msa1063160:intron 40.0%
ATGCCATGATAATTGTGGGA+CGG + chr7_2:54711224-54711243 Msa1063160:intron 40.0%
TTTGGAAGTTTGGAAGGAAG+AGG + chr7_2:54711555-54711574 Msa1063160:intron 40.0%
AAGTTTGGAAGGAAGAGGAA+TGG + chr7_2:54711560-54711579 Msa1063160:intron 40.0%
AGTTTGGAAGGAAGAGGAAT+GGG + chr7_2:54711561-54711580 Msa1063160:intron 40.0%
GTTTGCGAGTTTAAAGGAGA+AGG - chr7_2:54711614-54711633 None:intergenic 40.0%
!! GGCTTTGTTTGCGAGTTTAA+AGG - chr7_2:54711620-54711639 None:intergenic 40.0%
GGCAGATGCATGATTTAACT+CGG - chr7_2:54711705-54711724 None:intergenic 40.0%
ATAACAAAAATGGGACACCG+AGG - chr7_2:54712078-54712097 None:intergenic 40.0%
ATCCCAAATCCCATACGAAA+AGG - chr7_2:54712184-54712203 None:intergenic 40.0%
! TGCTCCCTTCAAACCTTTTT+CGG + chr7_2:54712272-54712291 Msa1063160:intron 40.0%
GCTTTCTGAGTCGTGTTAAA+AGG + chr7_2:54712538-54712557 Msa1063160:intron 40.0%
TTTCGACTCTCTTGTAAGGA+TGG - chr7_2:54712787-54712806 None:intergenic 40.0%
!!! TTTTTTTACCCCCTATGACG+GGG + chr7_2:54713165-54713184 Msa1063160:intron 40.0%
CTAACAGAGGAAATTAACGG+AGG + chr7_2:54713244-54713263 Msa1063160:intron 40.0%
CTAACGTTATGCAATTTCGG+GGG + chr7_2:54713278-54713297 Msa1063160:intron 40.0%
TAACGTTATGCAATTTCGGG+GGG + chr7_2:54713279-54713298 Msa1063160:intron 40.0%
TTGTCGCTCTTAAACATGAG+AGG - chr7_2:54713680-54713699 None:intergenic 40.0%
GAACTATAATATCGCCGTCT+AGG + chr7_2:54713722-54713741 Msa1063160:intron 40.0%
CTCTAGGTTGTCCATAAAAG+AGG + chr7_2:54713746-54713765 Msa1063160:intron 40.0%
CTAGGTTGTCCATAAAAGAG+GGG + chr7_2:54713748-54713767 Msa1063160:intron 40.0%
! TCCTTGTTTACAAAGGGTGT+TGG + chr7_2:54714034-54714053 Msa1063160:intron 40.0%
TCCAACACCCTTTGTAAACA+AGG - chr7_2:54714038-54714057 None:intergenic 40.0%
!! TTACAAAGGGTGTTGGATCT+AGG + chr7_2:54714041-54714060 Msa1063160:intron 40.0%
!! TACAAAGGGTGTTGGATCTA+GGG + chr7_2:54714042-54714061 Msa1063160:intron 40.0%
! CAACGCTAATTGAGTTGCTA+AGG + chr7_2:54714406-54714425 Msa1063160:intron 40.0%
!! GCAGAGATTAAGTTGGTCAA+GGG - chr7_2:54714684-54714703 None:intergenic 40.0%
!!! AAATTAGCCCAGGGGTATTT+TGG + chr7_2:54714954-54714973 Msa1063160:intron 40.0%
GAATTGACCAAAATACCCCT+GGG - chr7_2:54714964-54714983 None:intergenic 40.0%
CCAGATTAGCAAAATGGCAT+GGG - chr7_2:54714986-54715005 None:intergenic 40.0%
ACCAGATTAGCAAAATGGCA+TGG - chr7_2:54714987-54715006 None:intergenic 40.0%
ACGTCACCAGATTAGCAAAA+TGG - chr7_2:54714992-54715011 None:intergenic 40.0%
!! ATTTTGCTAATCTGGTGACG+TGG + chr7_2:54714991-54715010 Msa1063160:intron 40.0%
!! GCAGTGATTAAGTTGGTCAA+AGG + chr7_2:54715013-54715032 Msa1063160:intron 40.0%
ACCCTTAGTATCATAACGTG+CGG + chr7_2:54715231-54715250 Msa1063160:intron 40.0%
AATACTGCTAATGTGCATGC+TGG + chr7_2:54715387-54715406 Msa1063160:five_prime_UTR 40.0%
! TCTGTAGCAGTCTTTGGTTT+AGG + chr7_2:54715414-54715433 Msa1063160:five_prime_UTR 40.0%
CATTGAGAAAACTTACAGCG+AGG - chr7_2:54715449-54715468 None:intergenic 40.0%
GTGCTCAAAGCCAAAACATT+AGG + chr7_2:54715956-54715975 Msa1063160:intron 40.0%
CACAGACTTCATAAACCCAA+AGG + chr7_2:54715982-54716001 Msa1063160:five_prime_UTR 40.0%
! ACTCGTGAATTTTCGCTAAC+AGG + chr7_2:54716072-54716091 Msa1063160:intron 40.0%
ATCAGAGAAATGACTGAAGG+AGG + chr7_2:54716116-54716135 Msa1063160:five_prime_UTR 40.0%
TAGCTTCTTGTCTGTTCATG+AGG + chr7_2:54716187-54716206 Msa1063160:five_prime_UTR 40.0%
TTTAAATGAGACACCGCAAG+TGG - chr7_2:54716331-54716350 None:intergenic 40.0%
ACTTGCGGTGTCTCATTTAA+AGG + chr7_2:54716330-54716349 Msa1063160:intron 40.0%
TGGGGATTGACTGTACTATT+AGG + chr7_2:54716509-54716528 Msa1063160:five_prime_UTR 40.0%
ATGCATTCTGTGGCAAGATT+AGG - chr7_2:54716641-54716660 None:intergenic 40.0%
TTGCCACAGAATGCATGAAA+GGG + chr7_2:54716645-54716664 Msa1063160:five_prime_UTR 40.0%
GCTTGGTTTATCTCGTCAAA+GGG - chr7_2:54716791-54716810 None:intergenic 40.0%
AACACATCTCAATGACTTCC+CGG - chr7_2:54716831-54716850 None:intergenic 40.0%
TGCAACTTGCATGTGTATTG+TGG - chr7_2:54717382-54717401 None:intergenic 40.0%
GGAGGAAAATAAGGAAAGAG+AGG + chr7_2:54717522-54717541 Msa1063160:intron 40.0%
GGAAAATAAGGAAAGAGAGG+AGG + chr7_2:54717525-54717544 Msa1063160:intron 40.0%
AATAAGGAAAGAGAGGAGGT+AGG + chr7_2:54717529-54717548 Msa1063160:intron 40.0%
GCAAGTAATGATCTTTCCCT+TGG - chr7_2:54717884-54717903 None:intergenic 40.0%
CTCAAGCAGATGAGAAAGTT+TGG - chr7_2:54718156-54718175 None:intergenic 40.0%
TGTACAACCTCCTCAGAAAA+TGG + chr7_2:54709461-54709480 Msa1063160:five_prime_UTR 40.0%
! TTTTTGGACATGAAGCTTCC+GGG + chr7_2:54718498-54718517 Msa1063160:CDS 40.0%
GGTGTGAAAATATTCGTACC+CGG - chr7_2:54718519-54718538 None:intergenic 40.0%
! AGTGGTGCTAATATTCAACG+GGG + chr7_2:54718797-54718816 Msa1063160:CDS 40.0%
ACCAACATGTGTGAGAAGTA+TGG + chr7_2:54718855-54718874 Msa1063160:CDS 40.0%
ACCATACTTCTCACACATGT+TGG - chr7_2:54718859-54718878 None:intergenic 40.0%
AACTTTCACTGAGTACACAG+TGG + chr7_2:54718968-54718987 Msa1063160:CDS 40.0%
!!! GGTGAGTTTTTTGAGGCTAA+GGG - chr7_2:54719033-54719052 None:intergenic 40.0%
!!! AGGTGAGTTTTTTGAGGCTA+AGG - chr7_2:54719034-54719053 None:intergenic 40.0%
AAACTCACCTTGCTTAGTTG+TGG + chr7_2:54710435-54710454 Msa1063160:five_prime_UTR 40.0%
AAGAGAGAGTAACTTACCTG+TGG - chr7_2:54719075-54719094 None:intergenic 40.0%
GGTTCTTCTGTAGCAATCTT+TGG + chr7_2:54719210-54719229 Msa1063160:CDS 40.0%
!!! GTCTTTGTTTTCTCCTCTCA+AGG + chr7_2:54719343-54719362 Msa1063160:intron 40.0%
AAGGACAATTTCACTGCATC+AGG + chr7_2:54719362-54719381 Msa1063160:intron 40.0%
ATTTATATTGAACTGGGGCC+AGG + chr7_2:54719873-54719892 Msa1063160:intron 40.0%
! TTTTCCTTGTGTGAACCCTT+CGG + chr7_2:54719991-54720010 Msa1063160:intron 40.0%
! GTCTGTGATTCCCATTGATT+TGG - chr7_2:54720188-54720207 None:intergenic 40.0%
CACAGACTTCATAAACCCAA+AGG + chr7_2:54715982-54716001 Msa1063160:five_prime_UTR 40.0%
CAGACTTCTCTTCATCCTTT+GGG - chr7_2:54720219-54720238 None:intergenic 40.0%
ACAGACTTCTCTTCATCCTT+TGG - chr7_2:54720220-54720239 None:intergenic 40.0%
TGAAGAGAAGTCTGTAGTTG+AGG + chr7_2:54720225-54720244 Msa1063160:CDS 40.0%
CAGAGAATCAGAGAAATGAC+TGG + chr7_2:54720316-54720335 Msa1063160:intron 40.0%
GAGAATCAGAGAAATGACTG+GGG + chr7_2:54720318-54720337 Msa1063160:intron 40.0%
AGAATCAGAGAAATGACTGG+GGG + chr7_2:54720319-54720338 Msa1063160:intron 40.0%
AGGAAACGTGAACGTTCTAA+GGG + chr7_2:54720369-54720388 Msa1063160:intron 40.0%
TTCCTTCTTGTCTTGTCATG+AGG + chr7_2:54720393-54720412 Msa1063160:intron 40.0%
TACCTCATGACAAGACAAGA+AGG - chr7_2:54720398-54720417 None:intergenic 40.0%
!!! AACTCACGCAGAGGTATTTT+AGG + chr7_2:54720564-54720583 Msa1063160:intron 40.0%
! TTTGATGGTCGCAGAATTGA+AGG + chr7_2:54720869-54720888 Msa1063160:CDS 40.0%
ATTGAAGGTTCAGTGTTTGG+AGG + chr7_2:54720884-54720903 Msa1063160:CDS 40.0%
TCAGTGTTTGGAGGTTTCAA+AGG + chr7_2:54720893-54720912 Msa1063160:CDS 40.0%
ATGCATTCTGTGGCAAGATT+AGG - chr7_2:54716641-54716660 None:intergenic 40.0%
TTGCCACAGAATGCATGAAA+GGG + chr7_2:54716645-54716664 Msa1063160:five_prime_UTR 40.0%
!! GGCTTTGTTTATCTCGTCAA+AGG - chr7_2:54721080-54721099 None:intergenic 40.0%
AAGACATCTCAGTGATTTCC+CGG - chr7_2:54721119-54721138 None:intergenic 40.0%
! GCTTTTTGTATTAGCCGCTG+TGG + chr7_2:54709398-54709417 Msa1063160:intron 45.0%
ACAACCTCCTCAGAAAATGG+AGG + chr7_2:54709464-54709483 Msa1063160:five_prime_UTR 45.0%
!! CTAACCTCCATTTTCTGAGG+AGG - chr7_2:54709471-54709490 None:intergenic 45.0%
ACTGATCTCAGTGGTTGGAA+AGG + chr7_2:54709522-54709541 Msa1063160:five_prime_UTR 45.0%
! CGTGCTTATCCTCGGATTTT+TGG + chr7_2:54709683-54709702 Msa1063160:five_prime_UTR 45.0%
!! TTTTTGGCCATGAAGCTTCC+GGG + chr7_2:54709699-54709718 Msa1063160:five_prime_UTR 45.0%
TTTCTTACCCGGAAGCTTCA+TGG - chr7_2:54709709-54709728 None:intergenic 45.0%
! TGTAGGGTTGTGGAAAGTGT+AGG + chr7_2:54710132-54710151 Msa1063160:intron 45.0%
! GTAGGGTTGTGGAAAGTGTA+GGG + chr7_2:54710133-54710152 Msa1063160:intron 45.0%
! TAGGGTTGTGGAAAGTGTAG+GGG + chr7_2:54710134-54710153 Msa1063160:intron 45.0%
GGAAACTCCACAACTAAGCA+AGG - chr7_2:54710445-54710464 None:intergenic 45.0%
CTTAGTTGTGGAGTTTCCAC+AGG + chr7_2:54710447-54710466 Msa1063160:five_prime_UTR 45.0%
TCACCGTCCCACAATTATCA+TGG - chr7_2:54711230-54711249 None:intergenic 45.0%
! GGGAGCATAAGATAAGGAGA+GGG - chr7_2:54712259-54712278 None:intergenic 45.0%
! AGGGAGCATAAGATAAGGAG+AGG - chr7_2:54712260-54712279 None:intergenic 45.0%
GTGACATTTGACTGTCTACG+TGG - chr7_2:54713214-54713233 None:intergenic 45.0%
! CACGTCATGTTGACTAACAG+AGG + chr7_2:54713231-54713250 Msa1063160:intron 45.0%
! CTCTTAACTTGGATTCCGTG+AGG + chr7_2:54714283-54714302 Msa1063160:intron 45.0%
! TTAACTTGGATTCCGTGAGG+AGG + chr7_2:54714286-54714305 Msa1063160:intron 45.0%
AACTTTCAAGGTCCTCCTCA+CGG - chr7_2:54714301-54714320 None:intergenic 45.0%
TGTGTTTCACCCCTGCAAAT+AGG + chr7_2:54714580-54714599 Msa1063160:intron 45.0%
TTAAACGCCGCCTATTTGCA+GGG - chr7_2:54715104-54715123 None:intergenic 45.0%
TTTAAACGCCGCCTATTTGC+AGG - chr7_2:54715103-54715122 None:intergenic 45.0%
!! GGCAGAGATTAAGTTGGTCA+AGG - chr7_2:54714685-54714704 None:intergenic 45.0%
TGACGTGGCAGAGATTAAGT+TGG - chr7_2:54714691-54714710 None:intergenic 45.0%
CGAATTGACGAAAATACCCC+TGG + chr7_2:54714732-54714751 Msa1063160:intron 45.0%
GGAATTGACCAAAATACCCC+TGG - chr7_2:54714965-54714984 None:intergenic 45.0%
!!! CCCATGCCATTTTGCTAATC+TGG + chr7_2:54714983-54715002 Msa1063160:intron 45.0%
TGACGTGGCAGTGATTAAGT+TGG + chr7_2:54715006-54715025 Msa1063160:intron 45.0%
TTTAAACGCCGCCTATTTGC+AGG + chr7_2:54715103-54715122 Msa1063160:intron 45.0%
TTAAACGCCGCCTATTTGCA+GGG + chr7_2:54715104-54715123 Msa1063160:intron 45.0%
TGTGTTTCACCCCTGCAAAT+AGG - chr7_2:54714580-54714599 None:intergenic 45.0%
CCCGCACGTTATGATACTAA+GGG - chr7_2:54715235-54715254 None:intergenic 45.0%
CCCTTAGTATCATAACGTGC+GGG + chr7_2:54715232-54715251 Msa1063160:intron 45.0%
ACCCGCACGTTATGATACTA+AGG - chr7_2:54715236-54715255 None:intergenic 45.0%
ATGTAGGAATAGGAGCTGCT+TGG + chr7_2:54715364-54715383 Msa1063160:intron 45.0%
GGTTCATCTGTAGCAGTCTT+TGG + chr7_2:54715408-54715427 Msa1063160:five_prime_UTR 45.0%
! GTCTTTGGTTTAGGTGCAGT+TGG + chr7_2:54715423-54715442 Msa1063160:five_prime_UTR 45.0%
TGTTCGTATCCGTGCTTCAT+AGG - chr7_2:54715541-54715560 None:intergenic 45.0%
ATGAAGCACGGATACGAACA+CGG + chr7_2:54715541-54715560 Msa1063160:intron 45.0%
! GATTGGTGGTCCAGATTAGT+TGG - chr7_2:54716301-54716320 None:intergenic 45.0%
! TTTGATGGTCGCAGAATCGA+AGG + chr7_2:54716578-54716597 Msa1063160:five_prime_UTR 45.0%
!! AGAATCGAAGGTTCGGTGTT+TGG + chr7_2:54716590-54716609 Msa1063160:five_prime_UTR 45.0%
! TCGGTGTTTGGAGGTTTCAA+AGG + chr7_2:54716602-54716621 Msa1063160:five_prime_UTR 45.0%
CTGTGGCAAGATTAGGCAAT+TGG - chr7_2:54716634-54716653 None:intergenic 45.0%
CTTGCCACAGAATGCATGAA+AGG + chr7_2:54716644-54716663 Msa1063160:five_prime_UTR 45.0%
TGCCACAGAATGCATGAAAG+GGG + chr7_2:54716646-54716665 Msa1063160:five_prime_UTR 45.0%
TACCCCTTTCATGCATTCTG+TGG - chr7_2:54716651-54716670 None:intergenic 45.0%
! GGCTTGGTTTATCTCGTCAA+AGG - chr7_2:54716792-54716811 None:intergenic 45.0%
CAATCAAGAGATCGAAGGCT+TGG - chr7_2:54716808-54716827 None:intergenic 45.0%
ACAACCTCCTCAGAAAATGG+AGG + chr7_2:54709464-54709483 Msa1063160:five_prime_UTR 45.0%
!! CTAACCTCCATTTTCTGAGG+AGG - chr7_2:54709471-54709490 None:intergenic 45.0%
ACTGAGATCGGTGTGACAAA+TGG - chr7_2:54718331-54718350 None:intergenic 45.0%
ATTTGTCACACCGATCTCAG+TGG + chr7_2:54718330-54718349 Msa1063160:CDS 45.0%
! AACCTCAACGTGCTTTTCCT+CGG + chr7_2:54718474-54718493 Msa1063160:CDS 45.0%
! CGTGCTTTTCCTCGGATTTT+TGG + chr7_2:54718482-54718501 Msa1063160:CDS 45.0%
GCTTCATGTCCAAAAATCCG+AGG - chr7_2:54718494-54718513 None:intergenic 45.0%
! TGTAGGATTGTGGAGAGTGT+AGG + chr7_2:54718741-54718760 Msa1063160:intron 45.0%
! GTAGGATTGTGGAGAGTGTA+GGG + chr7_2:54718742-54718761 Msa1063160:intron 45.0%
! TAGGATTGTGGAGAGTGTAG+GGG + chr7_2:54718743-54718762 Msa1063160:intron 45.0%
CTAATATTCAACGGGGAGTG+TGG + chr7_2:54718804-54718823 Msa1063160:CDS 45.0%
TTTCACTGAGTACACAGTGG+TGG + chr7_2:54718971-54718990 Msa1063160:CDS 45.0%
GGAAACTCCACAACTAAGCA+AGG - chr7_2:54710445-54710464 None:intergenic 45.0%
CTTAGTTGTGGAGTTTCCAC+AGG + chr7_2:54710447-54710466 Msa1063160:five_prime_UTR 45.0%
ATGTAGGAATTGGAGCTGCT+TGG + chr7_2:54719166-54719185 Msa1063160:intron 45.0%
GCAGTGAAATTGTCCTTGAG+AGG - chr7_2:54719359-54719378 None:intergenic 45.0%
TCTTTCCCTTGAGAACCGAA+GGG - chr7_2:54720009-54720028 None:intergenic 45.0%
TAAAGTCGCATTAGGGAAGG+AGG - chr7_2:54720116-54720135 None:intergenic 45.0%
GAGAAGTCTGTAGTTGAGGT+TGG + chr7_2:54720229-54720248 Msa1063160:intron 45.0%
CAGGAAACGTGAACGTTCTA+AGG + chr7_2:54720368-54720387 Msa1063160:intron 45.0%
TTGGGGATTGACTGTACTAC+TGG + chr7_2:54720799-54720818 Msa1063160:CDS 45.0%
TGGGGATTGACTGTACTACT+GGG + chr7_2:54720800-54720819 Msa1063160:CDS 45.0%
GACCATCAAAGAGCTCCATT+GGG - chr7_2:54720859-54720878 None:intergenic 45.0%
CTTGCCACAGAATGCATGAA+AGG + chr7_2:54716644-54716663 Msa1063160:five_prime_UTR 45.0%
TGCCACAGAATGCATGAAAG+GGG + chr7_2:54716646-54716665 Msa1063160:five_prime_UTR 45.0%
TACCCCTTTCATGCATTCTG+TGG - chr7_2:54716651-54716670 None:intergenic 45.0%
!! GCCTTCGATCTTTTGATTGC+CGG + chr7_2:54721097-54721116 Msa1063160:CDS 45.0%
!! CCTTCGATCTTTTGATTGCC+GGG + chr7_2:54721098-54721117 Msa1063160:CDS 45.0%
!! TAAATAATTATAACAAAAAT+GGG - chr7_2:54712087-54712106 None:intergenic 5.0%
!! TTAAATAATTATAACAAAAA+TGG - chr7_2:54712088-54712107 None:intergenic 5.0%
!!! ACTTATTTTATAAAATTATT+TGG + chr7_2:54718660-54718679 Msa1063160:intron 5.0%
TCCAGGAGAACCCTTTGTAG+TGG + chr7_2:54709428-54709447 Msa1063160:five_prime_UTR 50.0%
TCCACTACAAAGGGTTCTCC+TGG - chr7_2:54709432-54709451 None:intergenic 50.0%
GTCACACTGATCTCAGTGGT+TGG + chr7_2:54709517-54709536 Msa1063160:five_prime_UTR 50.0%
TCTCAGTGGTTGGAAAGGAG+AGG + chr7_2:54709527-54709546 Msa1063160:five_prime_UTR 50.0%
! GCTCGCACTTTGATGGATGA+AGG - chr7_2:54709658-54709677 None:intergenic 50.0%
GCTTCATGGCCAAAAATCCG+AGG - chr7_2:54709695-54709714 None:intergenic 50.0%
! GTTGTGGAAAGTGTAGGGGA+AGG + chr7_2:54710138-54710157 Msa1063160:five_prime_UTR 50.0%
CAAGACGCACAACTACCCTT+TGG - chr7_2:54711463-54711482 None:intergenic 50.0%
GCGAGTTTAAAGGAGAAGGG+AGG - chr7_2:54711610-54711629 None:intergenic 50.0%
CGTGCTAGTCAAGGCTATTG+TGG - chr7_2:54712144-54712163 None:intergenic 50.0%
GAAGACACACGTGCTAGTCA+AGG - chr7_2:54712153-54712172 None:intergenic 50.0%
! ATATCGCCGTCTAGGACTCT+AGG + chr7_2:54713730-54713749 Msa1063160:intron 50.0%
GGACAACCTAGAGTCCTAGA+CGG - chr7_2:54713739-54713758 None:intergenic 50.0%
GTTTCACCCCTGCAAATAGG+CGG + chr7_2:54714583-54714602 Msa1063160:intron 50.0%
TAAACGCCGCCTATTTGCAG+GGG - chr7_2:54715105-54715124 None:intergenic 50.0%
GTCCTTGCAATCGCTAATCC+TGG + chr7_2:54714619-54714638 Msa1063160:intron 50.0%
! TGCCAGGATTAGCGATTGCA+AGG - chr7_2:54715073-54715092 None:intergenic 50.0%
CTTTGCAAGGGCAATTTGCC+AGG - chr7_2:54715057-54715076 None:intergenic 50.0%
CTTTGCAAGGGCAATTTGCC+AGG + chr7_2:54715057-54715076 Msa1063160:intron 50.0%
! TGCCAGGATTAGCGATTGCA+AGG + chr7_2:54715073-54715092 Msa1063160:intron 50.0%
GTCCTTGCAATCGCTAATCC+TGG - chr7_2:54714619-54714638 None:intergenic 50.0%
TAAACGCCGCCTATTTGCAG+GGG + chr7_2:54715105-54715124 Msa1063160:intron 50.0%
GTTTCACCCCTGCAAATAGG+CGG - chr7_2:54714583-54714602 None:intergenic 50.0%
! GATTAGGCGTGTTTCGGTGT+CGG - chr7_2:54715686-54715705 None:intergenic 50.0%
! TCCTCGGATTAGGCGTGTTT+CGG - chr7_2:54715692-54715711 None:intergenic 50.0%
! AACTTGGGTCAGGTTGCAGA+AGG + chr7_2:54715781-54715800 Msa1063160:intron 50.0%
! ACTTGGGTCAGGTTGCAGAA+GGG + chr7_2:54715782-54715801 Msa1063160:intron 50.0%
CCGGCTTCTCTTCATCCTTT+GGG - chr7_2:54716000-54716019 None:intergenic 50.0%
CCCAAAGGATGAAGAGAAGC+CGG + chr7_2:54715997-54716016 Msa1063160:five_prime_UTR 50.0%
! ACCGGCTTCTCTTCATCCTT+TGG - chr7_2:54716001-54716020 None:intergenic 50.0%
TGAAGAGAAGCCGGTATACG+AGG + chr7_2:54716006-54716025 Msa1063160:five_prime_UTR 50.0%
GACCATCAAAGAGCTCCATC+GGG - chr7_2:54716568-54716587 None:intergenic 50.0%
CGACCATCAAAGAGCTCCAT+CGG - chr7_2:54716569-54716588 None:intergenic 50.0%
TGGTCGCAGAATCGAAGGTT+CGG + chr7_2:54716583-54716602 Msa1063160:five_prime_UTR 50.0%
!! ATCGAAGGTTCGGTGTTTGG+AGG + chr7_2:54716593-54716612 Msa1063160:five_prime_UTR 50.0%
GCCTTCGATCTCTTGATTGC+CGG + chr7_2:54716809-54716828 Msa1063160:five_prime_UTR 50.0%
CCTTCGATCTCTTGATTGCC+GGG + chr7_2:54716810-54716829 Msa1063160:five_prime_UTR 50.0%
GGAAAGAGAGGAGGTAGGTT+AGG + chr7_2:54717534-54717553 Msa1063160:intron 50.0%
! TCCTGGAGCATTTGCCACAA+AGG - chr7_2:54718232-54718251 None:intergenic 50.0%
AAATGCTCCAGGAGAACCCT+TGG + chr7_2:54718239-54718258 Msa1063160:CDS 50.0%
TGCATTACCAAGGGTTCTCC+TGG - chr7_2:54718249-54718268 None:intergenic 50.0%
ACCGATCTCAGTGGTTGGAA+AGG + chr7_2:54718339-54718358 Msa1063160:CDS 50.0%
GCCTTTCCAACCACTGAGAT+CGG - chr7_2:54718343-54718362 None:intergenic 50.0%
! ATCCGAGGAAAAGCACGTTG+AGG - chr7_2:54718479-54718498 None:intergenic 50.0%
! ATTGTGGAGAGTGTAGGGGA+AGG + chr7_2:54718747-54718766 Msa1063160:CDS 50.0%
!! GAGTACACAGTGGTGGATTC+AGG + chr7_2:54718978-54718997 Msa1063160:CDS 50.0%
AGAACCGAAGGGTTCACACA+AGG - chr7_2:54719998-54720017 None:intergenic 50.0%
TGTGAACCCTTCGGTTCTCA+AGG + chr7_2:54720000-54720019 Msa1063160:intron 50.0%
GTGAACCCTTCGGTTCTCAA+GGG + chr7_2:54720001-54720020 Msa1063160:intron 50.0%
CTCTTTCCCTTGAGAACCGA+AGG - chr7_2:54720010-54720029 None:intergenic 50.0%
CTTCGGTTCTCAAGGGAAAG+AGG + chr7_2:54720008-54720027 Msa1063160:intron 50.0%
ATCAGAGAAATGACTGGGGG+AGG + chr7_2:54720322-54720341 Msa1063160:intron 50.0%
GGGCACGAGCAAAATGTGTT+GGG - chr7_2:54720447-54720466 None:intergenic 50.0%
TGGGCACGAGCAAAATGTGT+TGG - chr7_2:54720448-54720467 None:intergenic 50.0%
!!! CACTCACGCAGGGGTATTTT+CGG - chr7_2:54720480-54720499 None:intergenic 50.0%
TGGGAGCGAGCAATAACTGT+TGG + chr7_2:54720596-54720615 Msa1063160:intron 50.0%
GGGAGCGAGCAATAACTGTT+GGG + chr7_2:54720597-54720616 Msa1063160:intron 50.0%
GGGTGGAGAGGAAGTAACTT+TGG - chr7_2:54720839-54720858 None:intergenic 50.0%
GTTACTTCCTCTCCACCCAA+TGG + chr7_2:54720841-54720860 Msa1063160:CDS 50.0%
CATCAAAGAGCTCCATTGGG+TGG - chr7_2:54720856-54720875 None:intergenic 50.0%
CACCCAATGGAGCTCTTTGA+TGG + chr7_2:54720854-54720873 Msa1063160:CDS 50.0%
CGACCATCAAAGAGCTCCAT+TGG - chr7_2:54716569-54716588 None:intergenic 50.0%
CCCGGCAATCAAAAGATCGA+AGG - chr7_2:54721101-54721120 None:intergenic 50.0%
GTATTAGCCGCTGTGGCACA+TGG + chr7_2:54709405-54709424 Msa1063160:intron 55.0%
AGCCTCAGCGTGCTTATCCT+CGG + chr7_2:54709675-54709694 Msa1063160:five_prime_UTR 55.0%
ATCCGAGGATAAGCACGCTG+AGG - chr7_2:54709680-54709699 None:intergenic 55.0%
TTGCGGACGAGAGTCCTATG+AGG + chr7_2:54712000-54712019 Msa1063160:intron 55.0%
ACGGATACGAACACGGACAC+CGG + chr7_2:54715548-54715567 Msa1063160:intron 55.0%
GTCAGTGTCCATGTCGTGTC+CGG - chr7_2:54715570-54715589 None:intergenic 55.0%
!! TGTCGGTGTCGTGTCAGTGT+TGG + chr7_2:54715647-54715666 Msa1063160:intron 55.0%
ACCGAAACACGCCTAATCCG+AGG + chr7_2:54715688-54715707 Msa1063160:intron 55.0%
ATCTACGCACGGACACTCCT+CGG - chr7_2:54715708-54715727 None:intergenic 55.0%
! CTTGGGTCAGGTTGCAGAAG+GGG + chr7_2:54715783-54715802 Msa1063160:intron 55.0%
CAAGTGGACAGTGGGATTGG+TGG - chr7_2:54716315-54716334 None:intergenic 55.0%
CCAATCCCACTGTCCACTTG+CGG + chr7_2:54716315-54716334 Msa1063160:intron 55.0%
AGACACCGCAAGTGGACAGT+GGG - chr7_2:54716323-54716342 None:intergenic 55.0%
GGGTGGATGGGAAGCAACTT+TGG - chr7_2:54716548-54716567 None:intergenic 55.0%
AAGAGCTCCATCGGGTGGAT+GGG - chr7_2:54716560-54716579 None:intergenic 55.0%
AAAGAGCTCCATCGGGTGGA+TGG - chr7_2:54716561-54716580 None:intergenic 55.0%
CATCAAAGAGCTCCATCGGG+TGG - chr7_2:54716565-54716584 None:intergenic 55.0%
CACCCGATGGAGCTCTTTGA+TGG + chr7_2:54716563-54716582 Msa1063160:five_prime_UTR 55.0%
CCCGGCAATCAAGAGATCGA+AGG - chr7_2:54716813-54716832 None:intergenic 55.0%
GCCTTTGTGGCAAATGCTCC+AGG + chr7_2:54718228-54718247 Msa1063160:intron 55.0%
GTCACACCGATCTCAGTGGT+TGG + chr7_2:54718334-54718353 Msa1063160:CDS 55.0%
TCTCAGTGGTTGGAAAGGCG+AGG + chr7_2:54718344-54718363 Msa1063160:CDS 55.0%
TGCGTGAGTTCACTCACGCA+GGG - chr7_2:54720490-54720509 None:intergenic 55.0%
ATGCGTGAGTTCACTCACGC+AGG - chr7_2:54720491-54720510 None:intergenic 55.0%
GCGTGAGTTAACTCACGCAG+AGG + chr7_2:54720555-54720574 Msa1063160:intron 55.0%
AAGAGCTCCATTGGGTGGAG+AGG - chr7_2:54720851-54720870 None:intergenic 55.0%
TCCTGGACCATGTGCCACAG+CGG - chr7_2:54709415-54709434 None:intergenic 60.0%
CGCTGAGGCTCGCACTTTGA+TGG - chr7_2:54709665-54709684 None:intergenic 60.0%
GACGTATGCCCCGTCATAGG+GGG - chr7_2:54713176-54713195 None:intergenic 60.0%
CGACGTATGCCCCGTCATAG+GGG - chr7_2:54713177-54713196 None:intergenic 60.0%
CCGACGTATGCCCCGTCATA+GGG - chr7_2:54713178-54713197 None:intergenic 60.0%
! CCCTATGACGGGGCATACGT+CGG + chr7_2:54713175-54713194 Msa1063160:intron 60.0%
TCCGACGTATGCCCCGTCAT+AGG - chr7_2:54713179-54713198 None:intergenic 60.0%
GCACGGACACTCCTCGGATT+AGG - chr7_2:54715702-54715721 None:intergenic 60.0%
CCGCAAGTGGACAGTGGGAT+TGG - chr7_2:54716318-54716337 None:intergenic 60.0%
GAGACACCGCAAGTGGACAG+TGG - chr7_2:54716324-54716343 None:intergenic 60.0%
GTTGCTTCCCATCCACCCGA+TGG + chr7_2:54716550-54716569 Msa1063160:five_prime_UTR 60.0%
AACTGGGGCCAGGTTGCACT+CGG + chr7_2:54719883-54719902 Msa1063160:intron 60.0%
GCGTGAGTTCACTCACGCAG+GGG - chr7_2:54720489-54720508 None:intergenic 60.0%
CGGGGCATACGTCGGACATG+TGG + chr7_2:54713183-54713202 Msa1063160:intron 65.0%
CACGGACACCGGACACGACA+TGG + chr7_2:54715559-54715578 Msa1063160:intron 65.0%
CTCGTGCTCCGAGTGCAACC+TGG - chr7_2:54719894-54719913 None:intergenic 65.0%
GCCGCTGTGGCACATGGTCC+AGG + chr7_2:54709411-54709430 Msa1063160:intron 70.0%
! GCAGAAGGGGCACGAGCCAG+AGG + chr7_2:54715796-54715815 Msa1063160:five_prime_UTR 70.0%
GCACTCGGAGCACGAGCCAG+AGG + chr7_2:54719898-54719917 Msa1063160:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 54709142 54721319 54709142 ID=Msa1063160;Name=Msa1063160
chr7_2 mRNA 54709142 54721319 54709142 ID=Msa1063160-mRNA-1;Parent=Msa1063160;Name=Msa1063160-mRNA-1;_AED=0.15;_eAED=0.15;_QI=1478|0.83|0.78|1|0.88|0.84|19|169|347
chr7_2 exon 54709142 54709287 54709142 ID=Msa1063160-mRNA-1:exon:10066;Parent=Msa1063160-mRNA-1
chr7_2 exon 54709412 54709548 54709412 ID=Msa1063160-mRNA-1:exon:10067;Parent=Msa1063160-mRNA-1
chr7_2 exon 54709671 54709720 54709671 ID=Msa1063160-mRNA-1:exon:10068;Parent=Msa1063160-mRNA-1
chr7_2 exon 54710137 54710468 54710137 ID=Msa1063160-mRNA-1:exon:10069;Parent=Msa1063160-mRNA-1
chr7_2 exon 54715370 54715452 54715370 ID=Msa1063160-mRNA-1:exon:10070;Parent=Msa1063160-mRNA-1
chr7_2 exon 54715793 54715871 54715793 ID=Msa1063160-mRNA-1:exon:10071;Parent=Msa1063160-mRNA-1
chr7_2 exon 54715966 54716027 54715966 ID=Msa1063160-mRNA-1:exon:10072;Parent=Msa1063160-mRNA-1
chr7_2 exon 54716113 54716208 54716113 ID=Msa1063160-mRNA-1:exon:10073;Parent=Msa1063160-mRNA-1
chr7_2 exon 54716506 54716667 54716506 ID=Msa1063160-mRNA-1:exon:10074;Parent=Msa1063160-mRNA-1
chr7_2 exon 54716752 54717131 54716752 ID=Msa1063160-mRNA-1:exon:10075;Parent=Msa1063160-mRNA-1
chr7_2 exon 54718229 54718365 54718229 ID=Msa1063160-mRNA-1:exon:10076;Parent=Msa1063160-mRNA-1
chr7_2 exon 54718470 54718519 54718470 ID=Msa1063160-mRNA-1:exon:10077;Parent=Msa1063160-mRNA-1
chr7_2 exon 54718746 54718915 54718746 ID=Msa1063160-mRNA-1:exon:10078;Parent=Msa1063160-mRNA-1
chr7_2 exon 54718934 54719077 54718934 ID=Msa1063160-mRNA-1:exon:10079;Parent=Msa1063160-mRNA-1
chr7_2 exon 54719172 54719254 54719172 ID=Msa1063160-mRNA-1:exon:10080;Parent=Msa1063160-mRNA-1
chr7_2 exon 54719895 54719970 54719895 ID=Msa1063160-mRNA-1:exon:10081;Parent=Msa1063160-mRNA-1
chr7_2 exon 54720185 54720246 54720185 ID=Msa1063160-mRNA-1:exon:10082;Parent=Msa1063160-mRNA-1
chr7_2 exon 54720797 54720958 54720797 ID=Msa1063160-mRNA-1:exon:10083;Parent=Msa1063160-mRNA-1
chr7_2 exon 54721040 54721319 54721040 ID=Msa1063160-mRNA-1:exon:10084;Parent=Msa1063160-mRNA-1
chr7_2 five_prime_UTR 54709142 54709287 54709142 ID=Msa1063160-mRNA-1:five_prime_utr;Parent=Msa1063160-mRNA-1
chr7_2 five_prime_UTR 54709412 54709548 54709412 ID=Msa1063160-mRNA-1:five_prime_utr;Parent=Msa1063160-mRNA-1
chr7_2 five_prime_UTR 54709671 54709720 54709671 ID=Msa1063160-mRNA-1:five_prime_utr;Parent=Msa1063160-mRNA-1
chr7_2 five_prime_UTR 54710137 54710468 54710137 ID=Msa1063160-mRNA-1:five_prime_utr;Parent=Msa1063160-mRNA-1
chr7_2 five_prime_UTR 54715370 54715452 54715370 ID=Msa1063160-mRNA-1:five_prime_utr;Parent=Msa1063160-mRNA-1
chr7_2 five_prime_UTR 54715793 54715871 54715793 ID=Msa1063160-mRNA-1:five_prime_utr;Parent=Msa1063160-mRNA-1
chr7_2 five_prime_UTR 54715966 54716027 54715966 ID=Msa1063160-mRNA-1:five_prime_utr;Parent=Msa1063160-mRNA-1
chr7_2 five_prime_UTR 54716113 54716208 54716113 ID=Msa1063160-mRNA-1:five_prime_utr;Parent=Msa1063160-mRNA-1
chr7_2 five_prime_UTR 54716506 54716667 54716506 ID=Msa1063160-mRNA-1:five_prime_utr;Parent=Msa1063160-mRNA-1
chr7_2 five_prime_UTR 54716752 54717082 54716752 ID=Msa1063160-mRNA-1:five_prime_utr;Parent=Msa1063160-mRNA-1
chr7_2 CDS 54717083 54717131 54717083 ID=Msa1063160-mRNA-1:cds;Parent=Msa1063160-mRNA-1
chr7_2 CDS 54718229 54718365 54718229 ID=Msa1063160-mRNA-1:cds;Parent=Msa1063160-mRNA-1
chr7_2 CDS 54718470 54718519 54718470 ID=Msa1063160-mRNA-1:cds;Parent=Msa1063160-mRNA-1
chr7_2 CDS 54718746 54718915 54718746 ID=Msa1063160-mRNA-1:cds;Parent=Msa1063160-mRNA-1
chr7_2 CDS 54718934 54719077 54718934 ID=Msa1063160-mRNA-1:cds;Parent=Msa1063160-mRNA-1
chr7_2 CDS 54719172 54719254 54719172 ID=Msa1063160-mRNA-1:cds;Parent=Msa1063160-mRNA-1
chr7_2 CDS 54719895 54719970 54719895 ID=Msa1063160-mRNA-1:cds;Parent=Msa1063160-mRNA-1
chr7_2 CDS 54720185 54720246 54720185 ID=Msa1063160-mRNA-1:cds;Parent=Msa1063160-mRNA-1
chr7_2 CDS 54720797 54720958 54720797 ID=Msa1063160-mRNA-1:cds;Parent=Msa1063160-mRNA-1
chr7_2 CDS 54721040 54721150 54721040 ID=Msa1063160-mRNA-1:cds;Parent=Msa1063160-mRNA-1
chr7_2 three_prime_UTR 54721151 54721319 54721151 ID=Msa1063160-mRNA-1:three_prime_utr;Parent=Msa1063160-mRNA-1
Gene Sequence

>Msa1063160

ATGTCACTACTAAATGTAAAAATGAAAAAAATATGGTTTGCAAGGGAGACCTTTGTGGCAAATGCTCCAGGAGAACCCTTGGTAATGCAACAAATTCTTGTACAACCTCCTCAGAAAATGGAGGTTAGAATCAAGATCCTTTATACTTCCATTTGTCACACCGATCTCAGTGGTTGGAAAGGCGAGTCTGAACCTCAACGTGCTTTTCCTCGGATTTTTGGACATGAAGCTTCCGGGATTGTGGAGAGTGTAGGGGAAGGAGTGAAAGACTTAAAAGAAAATGACAAAGTGGTGCTAATATTCAACGGGGAGTGTGGTGAGTGTAATTACTGCAAGTGTGAGAAAACCAACATGTGTGAGAAGTATGGTGTAAACATAATGAAGAGACTAATGTGTGATGGTACAAATGGAAAACTCATTTACCATTTCTTGAACTCTTCAACTTTCACTGAGTACACAGTGGTGGATTCAGGTTGTGCTCTTAAGCTCAACACTGAAGACACCCTTAGCCTCAAAAAACTCACCTTGCTTAGTTGTGGAGTTTCCACAGGAATTGGAGCTGCTTGGAATAATGCTAATGTGCATGCTGGTTCTTCTGTAGCAATCTTTGGTTTAGGTGCAATAGGGCTCGCTGTTGCACTCGGAGCACGAGCCAGAGGTGCTTCAAAAATAATAGGCGTGGATGTCAACCCTGAGAAATTAACCATAGCCAAATCAATGGGAATCACAGACTTCATAAACCCAAAGGATGAAGAGAAGTCTGTAGTTGAGGGTTGGGGATTGACTGTACTACTGGGAATTCATGCATCACCAAAGTTACTTCCTCTCCACCCAATGGAGCTCTTTGATGGTCGCAGAATTGAAGGTTCAGTGTTTGGAGGTTTCAAAGGCAAAAGTCAATTGCCTAATCTTGCCACAGAATGCATGAAAGGGGCGATAAAGTTGGATGATTTCATCACTCACGAACTTCCCTTTGACGAGATAAACAAAGCCTTCGATCTTTTGATTGCCGGGAAATCACTGAGATGTCTTCTGACACTCTAA
Protein sequence

>Msa1063160

MSLLNVKMKKIWFARETFVANAPGEPLVMQQILVQPPQKMEVRIKILYTSICHTDLSGWKGESEPQRAFPRIFGHEASGIVESVGEGVKDLKENDKVVLIFNGECGECNYCKCEKTNMCEKYGVNIMKRLMCDGTNGKLIYHFLNSSTFTEYTVVDSGCALKLNTEDTLSLKKLTLLSCGVSTGIGAAWNNANVHAGSSVAIFGLGAIGLAVALGARARGASKIIGVDVNPEKLTIAKSMGITDFINPKDEEKSVVEGWGLTVLLGIHASPKLLPLHPMELFDGRRIEGSVFGGFKGKSQLPNLATECMKGAIKLDDFITHELPFDEINKAFDLLIAGKSLRCLLTL*