AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1063430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1063430 MtrunA17_Chr7g0242811 72.656 512 100 5 1 512 658 1129 0.0 723
Msa1063430 MtrunA17_Chr7g0242801 62.782 532 170 9 1 512 706 1229 0.0 599
Msa1063430 MtrunA17_Chr5g0394041 55.408 527 204 10 1 512 240 750 0.0 535
Msa1063430 MtrunA17_Chr7g0243031 55.926 540 171 11 1 512 143 643 0.0 531
Msa1063430 MtrunA17_Chr2g0319851 50.844 533 227 8 1 510 665 1185 1.16e-145 447
Msa1063430 MtrunA17_Chr7g0242741 56.410 429 146 11 106 512 1 410 4.20e-140 410
Msa1063430 MtrunA17_Chr2g0319921 47.905 549 238 14 1 512 638 1175 3.91e-129 404
Msa1063430 MtrunA17_Chr2g0319921 29.528 254 145 10 53 290 619 854 9.99e-12 67.8
Msa1063430 MtrunA17_Chr2g0319821 46.943 507 227 13 1 486 667 1152 2.94e-123 389
Msa1063430 MtrunA17_Chr7g0242791 55.510 245 79 7 295 512 2 243 9.91e-78 244
Msa1063430 MtrunA17_Chr2g0319811 53.143 175 64 3 260 427 7 170 7.74e-52 174
Msa1063430 MtrunA17_Chr7g0242751 87.879 99 12 0 1 99 661 759 2.30e-48 178
Msa1063430 MtrunA17_Chr2g0319841 43.111 225 86 5 299 488 3 220 2.01e-42 151
Msa1063430 MtrunA17_Chr2g0319831 41.176 221 110 6 297 512 23 228 5.95e-36 133
Msa1063430 MtrunA17_Chr4g0042011 37.778 270 130 10 1 268 637 870 3.64e-28 119
Msa1063430 MtrunA17_Chr4g0041441 36.975 238 110 5 1 238 620 817 4.63e-28 119
Msa1063430 MtrunA17_Chr6g0485991 28.542 480 237 18 1 455 633 1031 9.82e-28 117
Msa1063430 MtrunA17_Chr4g0041951 30.422 332 180 13 5 311 601 906 2.04e-26 114
Msa1063430 MtrunA17_Chr4g0041951 35.417 144 78 4 1 132 681 821 1.15e-12 70.9
Msa1063430 MtrunA17_Chr2g0299561 29.343 426 220 17 59 433 610 1005 3.83e-26 113
Msa1063430 MtrunA17_Chr7g0256881 35.686 255 117 7 1 251 623 834 9.50e-26 112
Msa1063430 MtrunA17_Chr7g0256881 30.526 190 121 3 47 235 597 776 2.81e-14 76.3
Msa1063430 MtrunA17_Chr6g0486221 37.449 243 106 8 1 238 638 839 8.00e-25 108
Msa1063430 MtrunA17_Chr6g0486731 38.278 209 113 6 61 268 621 814 9.89e-25 108
Msa1063430 MtrunA17_Chr6g0486731 37.600 125 73 3 1 122 633 755 6.69e-11 65.1
Msa1063430 MtrunA17_Chr4g0041241 33.094 278 133 11 69 311 630 889 4.23e-24 106
Msa1063430 MtrunA17_Chr4g0041241 35.829 187 109 6 1 182 634 814 1.14e-14 77.0
Msa1063430 MtrunA17_Chr6g0486521 36.052 233 121 8 69 275 637 867 4.06e-23 103
Msa1063430 MtrunA17_Chr6g0486481 34.272 213 130 4 61 268 621 828 1.09e-22 102
Msa1063430 MtrunA17_Chr6g0486361 34.146 246 114 10 61 268 618 853 2.48e-22 101
Msa1063430 MtrunA17_Chr6g0486301 33.704 270 121 9 1 267 630 844 6.29e-22 100
Msa1063430 MtrunA17_Chr3g0119601 32.558 301 151 9 1 258 628 919 2.51e-20 95.1
Msa1063430 MtrunA17_Chr4g0041611 30.451 266 123 6 75 288 640 895 2.73e-20 95.1
Msa1063430 MtrunA17_Chr7g0248121 28.904 301 149 5 1 238 632 930 3.80e-20 94.4
Msa1063430 MtrunA17_Chr4g0041931 29.124 388 216 18 59 411 621 984 8.52e-20 93.6
Msa1063430 MtrunA17_Chr7g0248521 28.333 300 149 7 1 238 631 926 1.63e-19 92.4
Msa1063430 MtrunA17_Chr4g0041431 30.973 226 107 6 59 238 430 652 1.77e-19 92.4
Msa1063430 MtrunA17_Chr4g0041431 43.529 85 47 1 1 85 451 534 1.47e-11 67.0
Msa1063430 MtrunA17_Chr6g0486311 36.364 198 107 4 59 238 610 806 3.67e-19 91.7
Msa1063430 MtrunA17_Chr8g0348541 29.139 302 149 6 1 239 637 936 5.47e-19 90.9
Msa1063430 MtrunA17_Chr8g0348541 30.409 171 108 4 67 236 631 791 5.34e-11 65.5
Msa1063430 MtrunA17_Chr8g0363851 31.387 274 148 9 1 236 468 739 6.96e-19 90.5
Msa1063430 MtrunA17_Chr8g0363851 30.435 207 117 5 56 235 439 645 2.38e-14 76.3
Msa1063430 MtrunA17_Chr4g0041941 28.212 358 206 15 69 415 621 938 2.07e-18 89.0
Msa1063430 MtrunA17_Chr4g0041231 28.315 279 154 9 59 311 613 871 4.51e-17 84.7
Msa1063430 MtrunA17_Chr3g0081531 31.076 251 145 7 1 238 621 856 1.51e-16 83.2
Msa1063430 MtrunA17_Chr2g0330121 35.918 245 132 9 1 238 456 682 2.04e-16 82.8
Msa1063430 MtrunA17_Chr3g0084151 26.829 246 163 6 1 238 615 851 2.35e-15 79.3
Msa1063430 MtrunA17_Chr3g0084151 26.500 200 122 4 45 243 601 776 5.46e-11 65.5
Msa1063430 MtrunA17_Chr7g0248201 28.829 222 120 5 1 220 21 206 2.84e-15 75.1
Msa1063430 MtrunA17_Chr4g0020591 34.016 244 138 8 1 238 635 861 5.89e-15 78.2
Msa1063430 MtrunA17_Chr8g0382411 28.571 259 145 5 18 237 97 354 5.97e-15 77.0
Msa1063430 MtrunA17_Chr8g0382411 29.864 221 120 4 18 237 26 212 8.05e-11 63.9
Msa1063430 MtrunA17_Chr8g0342731 30.992 242 147 9 1 238 55 280 7.19e-15 77.8
Msa1063430 MtrunA17_Chr6g0464781 37.162 148 61 6 174 311 51 176 7.31e-15 75.9
Msa1063430 MtrunA17_Chr8g0363891 33.613 238 142 8 1 235 3 227 9.81e-15 77.0
Msa1063430 MtrunA17_Chr7g0248511 29.796 245 131 6 1 243 638 843 1.55e-14 76.6
Msa1063430 MtrunA17_Chr3g0119581 34.568 243 129 11 8 238 5 229 1.80e-14 76.3
Msa1063430 MtrunA17_Chr8g0350061 30.328 244 144 8 1 238 118 341 1.93e-14 74.7
Msa1063430 MtrunA17_Chr4g0041981 59.322 59 24 0 1 59 145 203 8.62e-14 71.6
Msa1063430 MtrunA17_Chr8g0343671 28.421 190 116 2 56 238 654 830 1.60e-13 73.6
Msa1063430 MtrunA17_Chr8g0342691 29.339 242 151 8 1 238 627 852 2.69e-13 73.2
Msa1063430 MtrunA17_Chr6g0482141 30.038 263 120 10 1 237 665 889 2.94e-13 72.8
Msa1063430 MtrunA17_Chr4g0005291 29.747 158 98 2 81 238 698 842 5.11e-13 72.0
Msa1063430 MtrunA17_Chr6g0482441 29.930 284 148 13 1 242 609 883 6.50e-13 71.6
Msa1063430 MtrunA17_Chr6g0455251 28.063 253 120 4 1 204 637 876 1.06e-12 70.9
Msa1063430 MtrunA17_Chr6g0455251 30.481 187 88 4 57 235 614 766 3.20e-11 66.2
Msa1063430 MtrunA17_Chr8g0343661 29.592 196 123 3 44 239 323 503 2.30e-12 69.7
Msa1063430 MtrunA17_Chr8g0343581 30.814 172 106 3 67 238 679 837 4.75e-12 68.9
Msa1063430 MtrunA17_Chr8g0354681 25.703 249 161 6 1 240 638 871 6.94e-12 68.2
Msa1063430 MtrunA17_Chr4g0005391 28.481 158 100 2 81 238 688 832 7.07e-12 68.2
Msa1063430 MtrunA17_Chr1g0172811 31.250 192 110 4 56 238 609 787 1.03e-11 67.8
Msa1063430 MtrunA17_Chr7g0255681 38.211 123 73 3 1 122 1634 1754 1.78e-11 67.4
Msa1063430 MtrunA17_Chr8g0342671 27.642 246 143 9 18 238 625 860 1.86e-11 67.0
Msa1063430 MtrunA17_Chr8g0370511 32.680 153 87 2 59 204 604 747 1.93e-11 67.0
Msa1063430 MtrunA17_Chr4g0005221 29.560 159 99 1 81 239 7 152 3.30e-11 65.9
Msa1063430 MtrunA17_Chr8g0343631 28.426 197 120 3 49 238 625 807 3.46e-11 66.2
Msa1063430 MtrunA17_Chr4g0009171 31.944 144 89 2 61 204 1335 1469 4.32e-11 65.9
Msa1063430 MtrunA17_Chr8g0354711 27.027 259 141 8 1 238 630 861 6.92e-11 65.1
Msa1063430 MtrunA17_Chr4g0005261 29.747 158 98 1 81 238 636 780 7.37e-11 65.1
Msa1063430 MtrunA17_Chr8g0338841 31.373 153 89 2 59 204 69 212 7.72e-11 64.3
Msa1063430 MtrunA17_Chr8g0353371 28.426 197 129 2 37 233 611 795 9.14e-11 64.7
Msa1063430 MtrunA17_Chr2g0296451 32.026 153 88 2 59 204 120 263 9.64e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1063430 AT1G69550.1 35.686 255 143 10 3 238 963 1215 2.75e-20 95.5
Msa1063430 AT1G69550.1 34.728 239 141 8 1 235 889 1116 1.98e-18 89.7
Msa1063430 AT1G69550.1 30.709 254 155 6 1 235 698 949 6.90e-16 81.6
Msa1063430 AT1G69550.1 31.559 263 142 8 1 235 769 1021 1.57e-15 80.5
Msa1063430 AT1G69550.1 39.552 134 79 2 1 133 1081 1213 2.97e-13 73.2
Msa1063430 AT3G25510.2 33.750 240 141 7 1 235 560 786 2.99e-20 95.1
Msa1063430 AT3G25510.2 32.906 234 142 5 1 232 630 850 6.01e-18 88.2
Msa1063430 AT3G25510.2 28.146 302 146 7 1 235 465 762 1.16e-16 84.0
Msa1063430 AT3G25510.1 33.750 240 141 7 1 235 560 786 2.99e-20 95.1
Msa1063430 AT3G25510.1 32.906 234 142 5 1 232 630 850 6.01e-18 88.2
Msa1063430 AT3G25510.1 28.146 302 146 7 1 235 465 762 1.16e-16 84.0
Msa1063430 AT3G44670.1 35.317 252 132 10 1 238 721 955 1.91e-19 92.8
Msa1063430 AT3G44670.2 35.317 252 132 10 1 238 721 955 1.91e-19 92.8
Msa1063430 AT5G36930.4 36.327 245 128 8 1 238 625 848 5.41e-19 91.3
Msa1063430 AT5G36930.1 36.327 245 128 8 1 238 625 848 5.41e-19 91.3
Msa1063430 AT5G36930.2 36.327 245 128 8 1 238 628 851 5.46e-19 91.3
Msa1063430 AT5G36930.3 36.327 245 128 8 1 238 625 848 5.88e-19 91.3
Msa1063430 AT4G12010.1 30.824 279 147 5 1 238 648 921 1.64e-17 86.7
Msa1063430 AT5G45230.1 31.381 239 148 4 1 238 663 886 9.95e-17 84.3
Msa1063430 AT2G14080.1 33.333 240 143 6 1 235 679 906 1.91e-16 83.2
Msa1063430 AT2G14080.2 33.333 240 143 6 1 235 546 773 1.94e-16 83.2
Msa1063430 AT5G11250.3 33.206 262 144 11 1 239 599 852 2.74e-16 82.8
Msa1063430 AT5G11250.1 33.206 262 144 11 1 239 599 852 2.74e-16 82.8
Msa1063430 AT5G11250.2 33.206 262 144 11 1 239 681 934 2.91e-16 82.8
Msa1063430 AT3G04220.3 32.512 203 121 5 1 200 702 891 6.69e-16 81.6
Msa1063430 AT3G04220.3 30.409 171 108 3 67 235 696 857 1.59e-12 70.9
Msa1063430 AT4G19510.8 30.797 276 151 7 1 239 639 911 7.59e-16 81.6
Msa1063430 AT4G19510.1 30.797 276 151 7 1 239 639 911 7.59e-16 81.6
Msa1063430 AT4G19510.6 30.797 276 151 7 1 239 649 921 8.02e-16 81.3
Msa1063430 AT3G04220.1 32.512 203 121 5 1 200 673 862 8.40e-16 81.3
Msa1063430 AT3G04220.1 30.409 171 108 3 67 235 667 828 1.82e-12 70.5
Msa1063430 AT4G19510.5 30.797 276 151 7 1 239 676 948 8.51e-16 81.3
Msa1063430 AT4G19510.4 30.797 276 151 7 1 239 676 948 8.51e-16 81.3
Msa1063430 AT4G19510.7 30.797 276 151 7 1 239 676 948 8.51e-16 81.3
Msa1063430 AT3G44630.2 27.138 269 160 6 1 268 721 954 2.15e-15 80.1
Msa1063430 AT3G44630.2 29.329 283 141 9 1 238 744 1012 2.04e-13 73.6
Msa1063430 AT3G44630.1 27.138 269 160 6 1 268 721 954 2.15e-15 80.1
Msa1063430 AT3G44630.1 29.329 283 141 9 1 238 744 1012 2.04e-13 73.6
Msa1063430 AT3G44630.4 27.138 269 160 6 1 268 721 954 2.15e-15 80.1
Msa1063430 AT3G44630.4 29.329 283 141 9 1 238 744 1012 2.04e-13 73.6
Msa1063430 AT3G44630.3 27.138 269 160 6 1 268 721 954 2.26e-15 80.1
Msa1063430 AT3G44630.3 29.329 283 141 9 1 238 744 1012 2.44e-13 73.6
Msa1063430 AT3G44480.4 28.099 242 136 6 1 240 696 901 6.87e-15 78.6
Msa1063430 AT3G44480.4 28.889 270 156 7 1 237 719 985 4.11e-12 69.7
Msa1063430 AT3G44480.1 28.099 242 136 6 1 240 696 901 6.87e-15 78.6
Msa1063430 AT3G44480.1 28.889 270 156 7 1 237 719 985 4.11e-12 69.7
Msa1063430 AT5G44510.2 33.613 238 144 7 1 235 662 888 6.89e-15 78.6
Msa1063430 AT5G44510.2 33.613 238 138 10 5 235 640 864 9.80e-14 74.7
Msa1063430 AT5G44510.2 28.571 231 147 7 9 234 742 959 4.09e-11 66.2
Msa1063430 AT5G44510.1 33.613 238 144 7 1 235 662 888 7.23e-15 78.2
Msa1063430 AT5G44510.1 33.613 238 138 10 5 235 640 864 1.03e-13 74.7
Msa1063430 AT5G44510.1 29.004 231 146 7 9 234 742 959 3.97e-11 66.2
Msa1063430 AT5G44510.4 33.613 238 144 7 1 235 662 888 7.85e-15 78.2
Msa1063430 AT5G44510.4 33.613 238 138 10 5 235 640 864 1.01e-13 74.7
Msa1063430 AT5G44510.4 28.571 231 147 7 9 234 742 959 4.58e-11 66.2
Msa1063430 AT3G44480.2 28.099 242 136 6 1 240 696 901 7.90e-15 78.2
Msa1063430 AT3G44480.2 28.889 270 156 7 1 237 719 985 5.06e-12 69.3
Msa1063430 AT5G44510.3 33.613 238 144 7 1 235 662 888 7.97e-15 78.2
Msa1063430 AT5G44510.3 33.613 238 138 10 5 235 640 864 1.18e-13 74.3
Msa1063430 AT5G44510.3 28.571 231 147 7 9 234 742 959 4.85e-11 66.2
Msa1063430 AT3G44480.3 28.099 242 136 6 1 240 696 901 8.65e-15 78.2
Msa1063430 AT3G44480.3 28.889 270 156 7 1 237 719 985 5.30e-12 69.3
Msa1063430 AT3G44480.5 28.099 242 136 6 1 240 696 901 8.65e-15 78.2
Msa1063430 AT3G44480.5 28.889 270 156 7 1 237 719 985 5.30e-12 69.3
Msa1063430 AT5G17680.1 29.183 257 146 5 1 235 630 872 1.29e-14 77.4
Msa1063430 AT5G17680.1 27.178 287 152 8 1 238 744 1022 3.59e-13 72.8
Msa1063430 AT5G17680.2 29.183 257 146 5 1 235 631 873 1.30e-14 77.4
Msa1063430 AT5G17680.2 27.178 287 152 8 1 238 745 1023 3.62e-13 72.8
Msa1063430 AT4G19530.2 32.083 240 143 7 1 239 670 890 2.19e-14 76.6
Msa1063430 AT4G19530.1 32.083 240 143 7 1 239 670 890 2.23e-14 76.6
Msa1063430 AT5G18350.1 32.283 254 137 9 1 225 650 897 5.78e-14 75.5
Msa1063430 AT5G45200.3 28.517 263 148 5 1 238 667 914 1.07e-13 74.7
Msa1063430 AT5G45200.1 28.517 263 148 5 1 238 667 914 1.19e-13 74.3
Msa1063430 AT1G27180.1 32.432 222 135 7 17 236 912 1120 2.08e-13 73.9
Msa1063430 AT1G27180.1 28.169 213 128 7 20 225 1009 1203 8.06e-11 65.5
Msa1063430 AT1G27180.2 32.432 222 135 7 17 236 750 958 2.70e-13 73.6
Msa1063430 AT1G27180.2 28.169 213 128 7 20 225 847 1041 9.61e-11 65.1
Msa1063430 AT5G45200.2 28.517 263 148 5 1 238 423 670 2.77e-13 73.2
Msa1063430 AT1G27180.5 32.432 222 135 7 17 236 748 956 3.21e-13 73.2
Msa1063430 AT1G27180.8 32.432 222 135 7 17 236 748 956 3.21e-13 73.2
Msa1063430 AT1G27180.7 32.432 222 135 7 17 236 574 782 4.02e-13 72.8
Msa1063430 AT1G27180.6 32.432 222 135 7 17 236 574 782 4.02e-13 72.8
Msa1063430 AT1G27180.4 32.432 222 135 7 17 236 574 782 4.02e-13 72.8
Msa1063430 AT1G27170.2 30.992 242 146 7 8 235 617 851 5.78e-13 72.4
Msa1063430 AT1G27170.1 30.992 242 146 7 8 235 617 851 7.37e-13 72.0
Msa1063430 AT2G17050.3 28.000 325 136 12 1 238 558 871 7.51e-13 72.0
Msa1063430 AT2G17050.1 27.385 325 138 12 1 238 558 871 8.13e-13 72.0
Msa1063430 AT2G17050.2 27.385 325 138 12 1 238 558 871 9.00e-13 71.6
Msa1063430 AT3G44400.2 37.594 133 78 3 1 132 675 803 1.11e-12 71.2
Msa1063430 AT3G44400.2 30.476 210 125 7 1 201 652 849 2.23e-11 67.0
Msa1063430 AT3G44400.1 37.594 133 78 3 1 132 675 803 1.11e-12 71.2
Msa1063430 AT3G44400.1 30.476 210 125 7 1 201 652 849 2.23e-11 67.0
Msa1063430 AT3G44400.4 37.594 133 78 3 1 132 675 803 1.11e-12 71.2
Msa1063430 AT3G44400.4 30.476 210 125 7 1 201 652 849 2.23e-11 67.0
Msa1063430 AT3G44400.5 37.594 133 78 3 1 132 675 803 1.11e-12 71.2
Msa1063430 AT3G44400.5 30.476 210 125 7 1 201 652 849 2.23e-11 67.0
Msa1063430 AT3G44400.3 37.594 133 78 3 1 132 675 803 1.11e-12 71.2
Msa1063430 AT3G44400.3 30.476 210 125 7 1 201 652 849 2.23e-11 67.0
Msa1063430 AT5G45250.1 30.453 243 139 6 1 238 665 882 2.75e-12 70.1
Msa1063430 AT5G44870.1 29.545 220 135 6 20 238 725 925 9.64e-12 68.6
Msa1063430 AT5G44870.2 29.545 220 135 6 20 238 461 661 1.01e-11 68.2
Msa1063430 AT4G36150.1 32.157 255 142 13 1 238 657 897 1.74e-11 67.4
Msa1063430 AT1G27180.3 29.344 259 141 9 17 236 750 1005 2.32e-11 67.0
Msa1063430 AT1G27180.3 28.169 213 128 7 20 225 847 1041 6.56e-11 65.9
Msa1063430 AT1G27180.3 32.240 183 109 4 69 236 682 864 9.51e-11 65.1
Msa1063430 AT4G08450.1 28.571 266 134 7 1 246 637 866 4.85e-11 66.2
Msa1063430 AT4G08450.2 28.571 266 134 7 1 246 637 866 5.00e-11 66.2
Msa1063430 AT1G63750.1 30.653 199 117 4 55 238 450 642 6.82e-11 65.5
Msa1063430 AT1G63750.2 30.653 199 117 4 55 238 450 642 6.82e-11 65.5
Msa1063430 AT1G63750.3 30.653 199 117 4 55 238 617 809 8.52e-11 65.5
Msa1063430 AT5G17880.1 27.615 239 153 5 1 238 665 884 9.04e-11 65.1

Find 110 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCAAATCTTTGATTTATT+TGG 0.080860 7_2:+55353173 Msa1063430:CDS
AGTCTAGTTAGCCTTGATTT+TGG 0.179633 7_2:+55352826 Msa1063430:CDS
AATAATTGTCATGAAGTTTC+TGG 0.184631 7_2:+55354856 Msa1063430:CDS
CATGGAGCGTTTGTCCTTTA+AGG 0.186342 7_2:+55353479 Msa1063430:CDS
CAATAATGAAGCGTTTAATT+TGG 0.198020 7_2:-55353115 None:intergenic
TTTATGGACTTTAAGTAAAA+AGG 0.205901 7_2:-55355317 None:intergenic
GATCTAGCCGCTCCAGATTT+AGG 0.223895 7_2:-55352717 None:intergenic
GATATGAAATTCGTCCTTAA+AGG 0.228323 7_2:-55353493 None:intergenic
CTGGAGCGGCTAGATCTTTC+AGG 0.231581 7_2:+55352724 Msa1063430:CDS
CTTCACTTGTCCCACACATT+TGG 0.240111 7_2:+55356000 Msa1063430:three_prime_UTR
ATTTGATATGCCACTTGATT+TGG 0.240223 7_2:+55354957 Msa1063430:CDS
TTCTTCGATTTCAAGTTTAA+AGG 0.265920 7_2:+55354751 Msa1063430:CDS
AATCTCAGCAAAATTTATTA+TGG 0.279278 7_2:+55355131 Msa1063430:CDS
AGAGGATGTTTGTAGCCTTA+TGG 0.286686 7_2:+55354795 Msa1063430:CDS
CTCTCAAAAGAAAGATAAAA+AGG 0.291551 7_2:-55354916 None:intergenic
CTACACGCACAAAAGTAATT+TGG 0.301271 7_2:+55355783 Msa1063430:three_prime_UTR
GTGGTTAATTCTTGCTTCAT+AGG 0.303013 7_2:+55352621 Msa1063430:five_prime_UTR
TTCACTTGTCCCACACATTT+GGG 0.308484 7_2:+55356001 Msa1063430:three_prime_UTR
AAATGGTCCATCCGATTTAC+TGG 0.312804 7_2:+55353383 Msa1063430:CDS
ATAACAATATGTTCAGATTT+CGG 0.318741 7_2:+55355838 Msa1063430:three_prime_UTR
TTTGTAAGAAGTCCAATTGA+TGG 0.319003 7_2:-55352772 None:intergenic
ACTGAATAAACTAAGCTATT+AGG 0.320507 7_2:-55355973 None:intergenic
TTCTCTACAGTATCTTGATA+TGG 0.325835 7_2:+55352936 Msa1063430:CDS
CCATGATTCATGAGTCTGTT+GGG 0.345241 7_2:+55352977 Msa1063430:CDS
TTGGAAATGCAGCAACATTA+TGG 0.351667 7_2:+55352845 Msa1063430:CDS
GCACTTCCTATATTTAGATA+TGG 0.352037 7_2:+55355690 Msa1063430:three_prime_UTR
TCCAATCGCATCTGGTACTT+TGG 0.352041 7_2:-55353217 None:intergenic
CCTAAACTCCCAACACAAAA+TGG 0.367735 7_2:+55353366 Msa1063430:CDS
TCTTCGATTTCAAGTTTAAA+GGG 0.375682 7_2:+55354752 Msa1063430:CDS
TTGGAACTAAACAAAGTTGA+TGG 0.379047 7_2:+55354976 Msa1063430:CDS
AACAGGAAACTCGTCACTTT+CGG 0.379953 7_2:+55354677 Msa1063430:intron
AAATCCAACTTCCTTACAAT+TGG 0.382955 7_2:+55355223 Msa1063430:CDS
ATAATCCTGATCTATGATTA+CGG 0.383570 7_2:-55353434 None:intergenic
AAAATATCTTCCCAGTAAAT+CGG 0.386538 7_2:-55353394 None:intergenic
ACTTCAATTCCTTCCACCTT+CGG 0.395525 7_2:+55353285 Msa1063430:CDS
AGAGACTGCATAAATCTTGT+TGG 0.400867 7_2:+55353030 Msa1063430:CDS
CAGTAACCATATCTAAATAT+AGG 0.409102 7_2:-55355696 None:intergenic
GAATTCAATCCACTGAAATC+TGG 0.410984 7_2:-55352916 None:intergenic
TCCATGATTCATGAGTCTGT+TGG 0.417557 7_2:+55352976 Msa1063430:CDS
ATAGCTTAGTTTATTCAGTC+AGG 0.418522 7_2:+55355977 Msa1063430:three_prime_UTR
CATACCAATTGTAAGGAAGT+TGG 0.420286 7_2:-55355227 None:intergenic
TAATCCTGATCTATGATTAC+GGG 0.421530 7_2:-55353433 None:intergenic
AATTTGGCTTTACTCCTCCA+TGG 0.427125 7_2:-55353099 None:intergenic
TTAGAAACATACCAATTGTA+AGG 0.427600 7_2:-55355234 None:intergenic
TCAAATGTGGATCCATCAAT+TGG 0.428816 7_2:+55352760 Msa1063430:CDS
AGGTTTGATTATCAAGGAAT+GGG 0.445739 7_2:+55355086 Msa1063430:CDS
TTTAATCCTCCAATCGCATC+TGG 0.451497 7_2:-55353225 None:intergenic
ATGGATACAAAGACTAGTTC+AGG 0.451775 7_2:+55353533 Msa1063430:CDS
TTTAGAAAGACTAAATCTAC+AGG 0.452023 7_2:+55353251 Msa1063430:CDS
GCTTTGACATTGTTATTCCT+TGG 0.467240 7_2:+55354704 Msa1063430:CDS
ATTTGGCTTTACTCCTCCAT+GGG 0.470677 7_2:-55353098 None:intergenic
TCTAGTTTCACAATCTGTAA+AGG 0.474924 7_2:-55355174 None:intergenic
TTGCTGCATTTCCAAAATCA+AGG 0.475973 7_2:-55352837 None:intergenic
GAATCCCGTAATCATAGATC+AGG 0.480282 7_2:+55353429 Msa1063430:CDS
TCTACCAGGACTCAAGTTTG+TGG 0.480896 7_2:+55355753 Msa1063430:three_prime_UTR
GAGATCAGTTTCTTTCCCCT+TGG 0.487957 7_2:-55355283 None:intergenic
TTTGGATATAGTAAGGATAG+AGG 0.491276 7_2:+55354777 Msa1063430:CDS
TGAACTTGTCTCATTGCCAT+AGG 0.494639 7_2:+55353331 Msa1063430:CDS
CTGAATTGTAAATTGAAAGA+TGG 0.494644 7_2:+55356061 Msa1063430:three_prime_UTR
GACATTGTTATTCCTTGGCA+TGG 0.506563 7_2:+55354709 Msa1063430:CDS
GAAACTGATCTCTTTAATCT+CGG 0.514247 7_2:+55355294 Msa1063430:CDS
AAGGTTTGATTATCAAGGAA+TGG 0.514560 7_2:+55355085 Msa1063430:CDS
AGGATCTCCCCAATTTGAAA+AGG 0.514624 7_2:+55352641 Msa1063430:five_prime_UTR
TCGGCAAGGTTTGATTATCA+AGG 0.518993 7_2:+55355080 Msa1063430:CDS
GTAGCCTTATGGATTGTGTC+GGG 0.521880 7_2:+55354806 Msa1063430:CDS
CACATATCACATTCAAAGCT+CGG 0.523416 7_2:+55355061 Msa1063430:CDS
TCTCCCCAATTTGAAAAGGA+TGG 0.524651 7_2:+55352645 Msa1063430:exon
TGTAGCCTTATGGATTGTGT+CGG 0.524840 7_2:+55354805 Msa1063430:CDS
TCTTTAAGTTAAACAACGAA+TGG 0.526305 7_2:+55353514 Msa1063430:CDS
AAGAGATTTACCTCAGAGCT+AGG 0.530133 7_2:-55355368 None:intergenic
CCCAACAGACTCATGAATCA+TGG 0.533676 7_2:-55352977 None:intergenic
TTAAAGTCCATAAATAATGA+AGG 0.539226 7_2:+55355326 Msa1063430:exon
GACACCCGACACAATCCATA+AGG 0.540463 7_2:-55354810 None:intergenic
TAGGCAAACTCTGAAGCCTA+TGG 0.541183 7_2:-55353347 None:intergenic
ATGCATAAACTTATCAAATG+TGG 0.547168 7_2:+55352747 Msa1063430:CDS
AAAGTACCAGATGCGATTGG+AGG 0.554142 7_2:+55353219 Msa1063430:CDS
GAAGTTTCTGGTTCTCCACA+TGG 0.554210 7_2:+55354868 Msa1063430:CDS
TGAAGACATCCGAAGGTGGA+AGG 0.556237 7_2:-55353294 None:intergenic
TGATTGATATGTTTAACCCA+TGG 0.567081 7_2:+55353082 Msa1063430:CDS
TCCAAAGTACCAGATGCGAT+TGG 0.569498 7_2:+55353216 Msa1063430:CDS
TTGTTTAGTTCCAAATCAAG+TGG 0.578466 7_2:-55354967 None:intergenic
TATCTTCCCAGTAAATCGGA+TGG 0.580296 7_2:-55353390 None:intergenic
ATCGTATCAACCCAAATGTG+TGG 0.584149 7_2:-55356011 None:intergenic
CTTCGATTTCAAGTTTAAAG+GGG 0.589336 7_2:+55354753 Msa1063430:CDS
CATGATTCATGAGTCTGTTG+GGG 0.590711 7_2:+55352978 Msa1063430:CDS
GTTGAGATGAATCAAGCCAA+GGG 0.595513 7_2:+55355267 Msa1063430:CDS
AATAAATCAAAGATTTGAGA+GGG 0.595674 7_2:-55353170 None:intergenic
ATCACATTCAAAGCTCGGCA+AGG 0.595808 7_2:+55355066 Msa1063430:CDS
AAAATGTCATGTCCATGCCA+AGG 0.598553 7_2:-55354721 None:intergenic
TTCGATTTCAAGTTTAAAGG+GGG 0.600757 7_2:+55354754 Msa1063430:CDS
GGTTTGATTATCAAGGAATG+GGG 0.615560 7_2:+55355087 Msa1063430:CDS
AAATAAATCAAAGATTTGAG+AGG 0.619889 7_2:-55353171 None:intergenic
AGTTGAGATGAATCAAGCCA+AGG 0.623056 7_2:+55355266 Msa1063430:CDS
AATGGTCCATCCGATTTACT+GGG 0.625162 7_2:+55353384 Msa1063430:CDS
TAGAAACATGAACACTTCGG+AGG 0.628673 7_2:-55355862 None:intergenic
AGAAACATGAACACTTCGGA+GGG 0.635223 7_2:-55355861 None:intergenic
TTTAGGATTCCATCAAAACA+TGG 0.635928 7_2:-55352700 None:intergenic
GTTTGATTATCAAGGAATGG+GGG 0.636236 7_2:+55355088 Msa1063430:CDS
TCGTATCAACCCAAATGTGT+GGG 0.638255 7_2:-55356010 None:intergenic
ATGGAATCCTAAATCTGGAG+CGG 0.642743 7_2:+55352710 Msa1063430:CDS
GACCACTAGCTTATTCTACC+AGG 0.645971 7_2:+55355739 Msa1063430:three_prime_UTR
GCATAGAAACATGAACACTT+CGG 0.653921 7_2:-55355865 None:intergenic
GAAACTCGTCACTTTCGGTG+TGG 0.656014 7_2:+55354682 Msa1063430:CDS
ATATAATTCTCCTAGCTCTG+AGG 0.667766 7_2:+55355358 Msa1063430:three_prime_UTR
TTGATATGTTTAACCCATGG+AGG 0.676936 7_2:+55353085 Msa1063430:CDS
CAAAAGTACTATCATAACTG+TGG 0.678535 7_2:+55352602 Msa1063430:five_prime_UTR
GTCCTGGTAGAATAAGCTAG+TGG 0.699516 7_2:-55355741 None:intergenic
TTAGAAAGACTAAATCTACA+GGG 0.709189 7_2:+55353252 Msa1063430:CDS
GGAGAAGAGAATGATCCATG+TGG 0.712357 7_2:-55354883 None:intergenic
TTGAGATGAATCAAGCCAAG+GGG 0.718840 7_2:+55355268 Msa1063430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTAAATAGTAATATG+TGG - chr7_2:55353757-55353776 None:intergenic 10.0%
!! AAAATTATATATATATTCTC+TGG - chr7_2:55353898-55353917 None:intergenic 10.0%
!!! AATTTTTTTTTAATATTAGC+AGG + chr7_2:55353912-55353931 Msa1063430:intron 10.0%
!!! ATTTTTTTTTAATATTAGCA+GGG + chr7_2:55353913-55353932 Msa1063430:intron 10.0%
!! TATAATTAATTGTTTCAATT+TGG + chr7_2:55355565-55355584 Msa1063430:intron 10.0%
!! TTCTTTGCTAAAAAAAAAAA+AGG + chr7_2:55353807-55353826 Msa1063430:intron 15.0%
!!! TTTTCTATATCGTATATTTT+TGG + chr7_2:55353837-55353856 Msa1063430:intron 15.0%
!!! TTTCTATATCGTATATTTTT+GGG + chr7_2:55353838-55353857 Msa1063430:intron 15.0%
!!! AACATTCTCAATATTTATTT+TGG + chr7_2:55353869-55353888 Msa1063430:intron 15.0%
!!! ATTCATAGTTTTATATAAAG+TGG + chr7_2:55354268-55354287 Msa1063430:intron 15.0%
!!! TTCATAGTTTTATATAAAGT+GGG + chr7_2:55354269-55354288 Msa1063430:intron 15.0%
!!! TATTTTATCTTCTTTTTAAC+AGG + chr7_2:55354660-55354679 Msa1063430:intron 15.0%
!!! TTTTTTTCCTTCATTATTTA+TGG - chr7_2:55355336-55355355 None:intergenic 15.0%
!!! TTGCTTTTATTTTTTTTCTT+TGG + chr7_2:55355923-55355942 Msa1063430:three_prime_UTR 15.0%
!! AATAAATCAAAGATTTGAGA+GGG - chr7_2:55353173-55353192 None:intergenic 20.0%
!! AAATAAATCAAAGATTTGAG+AGG - chr7_2:55353174-55353193 None:intergenic 20.0%
!!! TCTCAAATCTTTGATTTATT+TGG + chr7_2:55353173-55353192 Msa1063430:CDS 20.0%
!!! AATTTAACCTTCATGTTTTT+AGG - chr7_2:55353700-55353719 None:intergenic 20.0%
!! TTTGTAGATTTGAATATAAG+AGG + chr7_2:55354340-55354359 Msa1063430:intron 20.0%
!!! GTTGTTTACTCTATTTTATT+CGG + chr7_2:55354499-55354518 Msa1063430:intron 20.0%
!!! CTAATTGTTTCTTGAAATTA+AGG - chr7_2:55354543-55354562 None:intergenic 20.0%
!! TTGATGGAAAAAATTATCTT+TGG + chr7_2:55354992-55355011 Msa1063430:CDS 20.0%
!! TGATGGAAAAAATTATCTTT+GGG + chr7_2:55354993-55355012 Msa1063430:CDS 20.0%
!! AATCTCAGCAAAATTTATTA+TGG + chr7_2:55355131-55355150 Msa1063430:CDS 20.0%
!! TTTATGGACTTTAAGTAAAA+AGG - chr7_2:55355320-55355339 None:intergenic 20.0%
!! TTAAAGTCCATAAATAATGA+AGG + chr7_2:55355326-55355345 Msa1063430:exon 20.0%
!! TAATTAATCATGTTGTTAGT+CGG - chr7_2:55355456-55355475 None:intergenic 20.0%
!! ATAACAATATGTTCAGATTT+CGG + chr7_2:55355838-55355857 Msa1063430:three_prime_UTR 20.0%
!! TAGCCAAAACTTAAAAAAAA+GGG - chr7_2:55355890-55355909 None:intergenic 20.0%
! ATGCATAAACTTATCAAATG+TGG + chr7_2:55352747-55352766 Msa1063430:CDS 25.0%
!! CAATAATGAAGCGTTTAATT+TGG - chr7_2:55353118-55353137 None:intergenic 25.0%
! TTTAGAAAGACTAAATCTAC+AGG + chr7_2:55353251-55353270 Msa1063430:CDS 25.0%
! TTAGAAAGACTAAATCTACA+GGG + chr7_2:55353252-55353271 Msa1063430:CDS 25.0%
! AAAATATCTTCCCAGTAAAT+CGG - chr7_2:55353397-55353416 None:intergenic 25.0%
! ATAATCCTGATCTATGATTA+CGG - chr7_2:55353437-55353456 None:intergenic 25.0%
!! TCTTTAAGTTAAACAACGAA+TGG + chr7_2:55353514-55353533 Msa1063430:CDS 25.0%
!! AATAGTAATATGTGGTCTTT+TGG - chr7_2:55353749-55353768 None:intergenic 25.0%
!!! TGCTAGTATTTTTTTTCTTC+TGG - chr7_2:55353996-55354015 None:intergenic 25.0%
! GTGAAATGCAAATTAGATAA+CGG - chr7_2:55354408-55354427 None:intergenic 25.0%
!!! TGTGTTTTTTAACATAGTAG+AGG + chr7_2:55354442-55354461 Msa1063430:intron 25.0%
! AATTAGTCGTGTAACAAATT+CGG + chr7_2:55354557-55354576 Msa1063430:intron 25.0%
!!! TTCTTCGATTTCAAGTTTAA+AGG + chr7_2:55354751-55354770 Msa1063430:CDS 25.0%
!!! TCTTCGATTTCAAGTTTAAA+GGG + chr7_2:55354752-55354771 Msa1063430:CDS 25.0%
! AATAATTGTCATGAAGTTTC+TGG + chr7_2:55354856-55354875 Msa1063430:CDS 25.0%
! AAAGAAAGATAAAAAGGATG+TGG - chr7_2:55354913-55354932 None:intergenic 25.0%
! CTCTCAAAAGAAAGATAAAA+AGG - chr7_2:55354919-55354938 None:intergenic 25.0%
! TTAGAAACATACCAATTGTA+AGG - chr7_2:55355237-55355256 None:intergenic 25.0%
! ATGTATCACTAGCATATTAT+TGG + chr7_2:55355479-55355498 Msa1063430:intron 25.0%
!! ATTTTCAATTCATACGTACA+GGG - chr7_2:55355596-55355615 None:intergenic 25.0%
!! AATTTTCAATTCATACGTAC+AGG - chr7_2:55355597-55355616 None:intergenic 25.0%
!! CTGAAAGAGAAAAAGAATTT+TGG - chr7_2:55355665-55355684 None:intergenic 25.0%
!! CAAAATTCTTTTTCTCTTTC+AGG + chr7_2:55355663-55355682 Msa1063430:intron 25.0%
! CAGTAACCATATCTAAATAT+AGG - chr7_2:55355699-55355718 None:intergenic 25.0%
!!! ATGCCCTTTTTTTTAAGTTT+TGG + chr7_2:55355884-55355903 Msa1063430:three_prime_UTR 25.0%
! GTAGCCAAAACTTAAAAAAA+AGG - chr7_2:55355891-55355910 None:intergenic 25.0%
! ACTGAATAAACTAAGCTATT+AGG - chr7_2:55355976-55355995 None:intergenic 25.0%
! CTGAATTGTAAATTGAAAGA+TGG + chr7_2:55356061-55356080 Msa1063430:three_prime_UTR 25.0%
!! CAAAAGTACTATCATAACTG+TGG + chr7_2:55352602-55352621 Msa1063430:five_prime_UTR 30.0%
! AGATCCATCCTTTTCAAATT+GGG - chr7_2:55352652-55352671 None:intergenic 30.0%
! TTTAGGATTCCATCAAAACA+TGG - chr7_2:55352703-55352722 None:intergenic 30.0%
! TTTTGATGGAATCCTAAATC+TGG + chr7_2:55352705-55352724 Msa1063430:CDS 30.0%
TTTGTAAGAAGTCCAATTGA+TGG - chr7_2:55352775-55352794 None:intergenic 30.0%
TTCTCTACAGTATCTTGATA+TGG + chr7_2:55352936-55352955 Msa1063430:CDS 30.0%
TGATTGATATGTTTAACCCA+TGG + chr7_2:55353082-55353101 Msa1063430:CDS 30.0%
TAATCCTGATCTATGATTAC+GGG - chr7_2:55353436-55353455 None:intergenic 30.0%
GATATGAAATTCGTCCTTAA+AGG - chr7_2:55353496-55353515 None:intergenic 30.0%
TAAAATAGAGAAAGAAAGCG+AGG - chr7_2:55353582-55353601 None:intergenic 30.0%
!!! GTTTTTTCTCTGCTGATATA+TGG + chr7_2:55353616-55353635 Msa1063430:intron 30.0%
!!! TTAACCTTCATGTTTTTAGG+TGG - chr7_2:55353697-55353716 None:intergenic 30.0%
!! CAAATACGCATCTTTTGATT+TGG + chr7_2:55353722-55353741 Msa1063430:intron 30.0%
GCAAAGAAAATTACAATGTG+TGG - chr7_2:55353795-55353814 None:intergenic 30.0%
AGTTGACGTAAAGAAAAACA+TGG + chr7_2:55353940-55353959 Msa1063430:intron 30.0%
!!! GCTAGTATTTTTTTTCTCTC+TGG - chr7_2:55354105-55354124 None:intergenic 30.0%
!!! GTTTTTTAACATAGTAGAGG+AGG + chr7_2:55354445-55354464 Msa1063430:intron 30.0%
!! CTTCGATTTCAAGTTTAAAG+GGG + chr7_2:55354753-55354772 Msa1063430:CDS 30.0%
!! TTCGATTTCAAGTTTAAAGG+GGG + chr7_2:55354754-55354773 Msa1063430:CDS 30.0%
TTTGGATATAGTAAGGATAG+AGG + chr7_2:55354777-55354796 Msa1063430:CDS 30.0%
!! TTCTTTTGAGAGTGATTACT+CGG + chr7_2:55354927-55354946 Msa1063430:CDS 30.0%
! ATTTGATATGCCACTTGATT+TGG + chr7_2:55354957-55354976 Msa1063430:CDS 30.0%
! TTGTTTAGTTCCAAATCAAG+TGG - chr7_2:55354970-55354989 None:intergenic 30.0%
TTGGAACTAAACAAAGTTGA+TGG + chr7_2:55354976-55354995 Msa1063430:CDS 30.0%
AAGGTTTGATTATCAAGGAA+TGG + chr7_2:55355085-55355104 Msa1063430:CDS 30.0%
AGGTTTGATTATCAAGGAAT+GGG + chr7_2:55355086-55355105 Msa1063430:CDS 30.0%
! AATTTTGCTGAGATTTTCCT+GGG - chr7_2:55355126-55355145 None:intergenic 30.0%
! AAATTTTGCTGAGATTTTCC+TGG - chr7_2:55355127-55355146 None:intergenic 30.0%
! TCTAGTTTCACAATCTGTAA+AGG - chr7_2:55355177-55355196 None:intergenic 30.0%
! TTGTAAGGAAGTTGGATTTT+AGG - chr7_2:55355222-55355241 None:intergenic 30.0%
AAATCCAACTTCCTTACAAT+TGG + chr7_2:55355223-55355242 Msa1063430:CDS 30.0%
GAAACTGATCTCTTTAATCT+CGG + chr7_2:55355294-55355313 Msa1063430:CDS 30.0%
CTCAACATATTAATTGGAGA+TGG - chr7_2:55355528-55355547 None:intergenic 30.0%
TCTCGTCTCAACATATTAAT+TGG - chr7_2:55355534-55355553 None:intergenic 30.0%
! TGTTCATCTGCATTTTCATA+TGG + chr7_2:55355637-55355656 Msa1063430:intron 30.0%
GCACTTCCTATATTTAGATA+TGG + chr7_2:55355690-55355709 Msa1063430:three_prime_UTR 30.0%
ATAGCTTAGTTTATTCAGTC+AGG + chr7_2:55355977-55355996 Msa1063430:three_prime_UTR 30.0%
GTGGTTAATTCTTGCTTCAT+AGG + chr7_2:55352621-55352640 Msa1063430:five_prime_UTR 35.0%
! GATCCATCCTTTTCAAATTG+GGG - chr7_2:55352651-55352670 None:intergenic 35.0%
! CAGATCCATCCTTTTCAAAT+TGG - chr7_2:55352653-55352672 None:intergenic 35.0%
!! AAGATGACTCCATGTTTTGA+TGG + chr7_2:55352691-55352710 Msa1063430:CDS 35.0%
TCAAATGTGGATCCATCAAT+TGG + chr7_2:55352760-55352779 Msa1063430:CDS 35.0%
!!! AGTCTAGTTAGCCTTGATTT+TGG + chr7_2:55352826-55352845 Msa1063430:CDS 35.0%
TTGCTGCATTTCCAAAATCA+AGG - chr7_2:55352840-55352859 None:intergenic 35.0%
TTGGAAATGCAGCAACATTA+TGG + chr7_2:55352845-55352864 Msa1063430:CDS 35.0%
GAAAAAACTCCAGATTTCAG+TGG + chr7_2:55352907-55352926 Msa1063430:CDS 35.0%
GAATTCAATCCACTGAAATC+TGG - chr7_2:55352919-55352938 None:intergenic 35.0%
AGAGACTGCATAAATCTTGT+TGG + chr7_2:55353030-55353049 Msa1063430:CDS 35.0%
!!! TTTGTTTTGAAAGCTGTGTC+AGG - chr7_2:55353060-55353079 None:intergenic 35.0%
TTGATATGTTTAACCCATGG+AGG + chr7_2:55353085-55353104 Msa1063430:CDS 35.0%
!! TAGATTTTGAAGACATCCGA+AGG - chr7_2:55353304-55353323 None:intergenic 35.0%
!! TTTTGACTCTCTCATTTGCA+TGG + chr7_2:55353461-55353480 Msa1063430:CDS 35.0%
! ATGGATACAAAGACTAGTTC+AGG + chr7_2:55353533-55353552 Msa1063430:CDS 35.0%
AATTAACAACCTTCGTGTGT+GGG - chr7_2:55353669-55353688 None:intergenic 35.0%
AAATTAACAACCTTCGTGTG+TGG - chr7_2:55353670-55353689 None:intergenic 35.0%
! TTTTAACATAGTAGAGGAGG+AGG + chr7_2:55354448-55354467 Msa1063430:intron 35.0%
! GCTTTGACATTGTTATTCCT+TGG + chr7_2:55354704-55354723 Msa1063430:CDS 35.0%
!! TTTCAAGTTTAAAGGGGGTT+TGG + chr7_2:55354759-55354778 Msa1063430:CDS 35.0%
!!! CACTGCCATTTTGTAAAAAC+AGG + chr7_2:55355036-55355055 Msa1063430:CDS 35.0%
!!! GTGCTCCTGTTTTTACAAAA+TGG - chr7_2:55355044-55355063 None:intergenic 35.0%
CACATATCACATTCAAAGCT+CGG + chr7_2:55355061-55355080 Msa1063430:CDS 35.0%
GGTTTGATTATCAAGGAATG+GGG + chr7_2:55355087-55355106 Msa1063430:CDS 35.0%
GTTTGATTATCAAGGAATGG+GGG + chr7_2:55355088-55355107 Msa1063430:CDS 35.0%
CATACCAATTGTAAGGAAGT+TGG - chr7_2:55355230-55355249 None:intergenic 35.0%
!! ATATAATTCTCCTAGCTCTG+AGG + chr7_2:55355358-55355377 Msa1063430:three_prime_UTR 35.0%
TGTTAGTCGGTAATTAACGA+CGG - chr7_2:55355443-55355462 None:intergenic 35.0%
CTACACGCACAAAAGTAATT+TGG + chr7_2:55355783-55355802 Msa1063430:three_prime_UTR 35.0%
GCATAGAAACATGAACACTT+CGG - chr7_2:55355868-55355887 None:intergenic 35.0%
AGGATCTCCCCAATTTGAAA+AGG + chr7_2:55352641-55352660 Msa1063430:five_prime_UTR 40.0%
TCTCCCCAATTTGAAAAGGA+TGG + chr7_2:55352645-55352664 Msa1063430:exon 40.0%
ATGGAATCCTAAATCTGGAG+CGG + chr7_2:55352710-55352729 Msa1063430:CDS 40.0%
TCCATGATTCATGAGTCTGT+TGG + chr7_2:55352976-55352995 Msa1063430:CDS 40.0%
CCATGATTCATGAGTCTGTT+GGG + chr7_2:55352977-55352996 Msa1063430:CDS 40.0%
CATGATTCATGAGTCTGTTG+GGG + chr7_2:55352978-55352997 Msa1063430:CDS 40.0%
!! ATTTGGCTTTACTCCTCCAT+GGG - chr7_2:55353101-55353120 None:intergenic 40.0%
!! AATTTGGCTTTACTCCTCCA+TGG - chr7_2:55353102-55353121 None:intergenic 40.0%
TTTAATCCTCCAATCGCATC+TGG - chr7_2:55353228-55353247 None:intergenic 40.0%
ACTTCAATTCCTTCCACCTT+CGG + chr7_2:55353285-55353304 Msa1063430:CDS 40.0%
!! ATTTTGAAGACATCCGAAGG+TGG - chr7_2:55353301-55353320 None:intergenic 40.0%
TGAACTTGTCTCATTGCCAT+AGG + chr7_2:55353331-55353350 Msa1063430:CDS 40.0%
! CCATTTTGTGTTGGGAGTTT+AGG - chr7_2:55353369-55353388 None:intergenic 40.0%
CCTAAACTCCCAACACAAAA+TGG + chr7_2:55353366-55353385 Msa1063430:CDS 40.0%
AAATGGTCCATCCGATTTAC+TGG + chr7_2:55353383-55353402 Msa1063430:CDS 40.0%
AATGGTCCATCCGATTTACT+GGG + chr7_2:55353384-55353403 Msa1063430:CDS 40.0%
TATCTTCCCAGTAAATCGGA+TGG - chr7_2:55353393-55353412 None:intergenic 40.0%
GAATCCCGTAATCATAGATC+AGG + chr7_2:55353429-55353448 Msa1063430:CDS 40.0%
AGAGCCACCTAAAAACATGA+AGG + chr7_2:55353690-55353709 Msa1063430:intron 40.0%
GTGGGTGTAATTTAGCAATG+TGG + chr7_2:55354287-55354306 Msa1063430:intron 40.0%
! AACAGGAAACTCGTCACTTT+CGG + chr7_2:55354677-55354696 Msa1063430:intron 40.0%
! GACATTGTTATTCCTTGGCA+TGG + chr7_2:55354709-55354728 Msa1063430:CDS 40.0%
AAAATGTCATGTCCATGCCA+AGG - chr7_2:55354724-55354743 None:intergenic 40.0%
AAGGGGGTTTGGATATAGTA+AGG + chr7_2:55354770-55354789 Msa1063430:CDS 40.0%
! AGAGGATGTTTGTAGCCTTA+TGG + chr7_2:55354795-55354814 Msa1063430:CDS 40.0%
!! TGTAGCCTTATGGATTGTGT+CGG + chr7_2:55354805-55354824 Msa1063430:CDS 40.0%
AGATAAAAAGGATGTGGCAG+TGG - chr7_2:55354907-55354926 None:intergenic 40.0%
TCGGCAAGGTTTGATTATCA+AGG + chr7_2:55355080-55355099 Msa1063430:CDS 40.0%
AGTTGAGATGAATCAAGCCA+AGG + chr7_2:55355266-55355285 Msa1063430:CDS 40.0%
GTTGAGATGAATCAAGCCAA+GGG + chr7_2:55355267-55355286 Msa1063430:CDS 40.0%
TTGAGATGAATCAAGCCAAG+GGG + chr7_2:55355268-55355287 Msa1063430:CDS 40.0%
AAGAGATTTACCTCAGAGCT+AGG - chr7_2:55355371-55355390 None:intergenic 40.0%
TCGGTAATTAACGACGGTAT+TGG - chr7_2:55355437-55355456 None:intergenic 40.0%
! TTTTCCACAAACTTGAGTCC+TGG - chr7_2:55355760-55355779 None:intergenic 40.0%
AGAAACATGAACACTTCGGA+GGG - chr7_2:55355864-55355883 None:intergenic 40.0%
TAGAAACATGAACACTTCGG+AGG - chr7_2:55355865-55355884 None:intergenic 40.0%
TTCACTTGTCCCACACATTT+GGG + chr7_2:55356001-55356020 Msa1063430:three_prime_UTR 40.0%
TCGTATCAACCCAAATGTGT+GGG - chr7_2:55356013-55356032 None:intergenic 40.0%
ATCGTATCAACCCAAATGTG+TGG - chr7_2:55356014-55356033 None:intergenic 40.0%
CCCAACAGACTCATGAATCA+TGG - chr7_2:55352980-55352999 None:intergenic 45.0%
! TCCAAAGTACCAGATGCGAT+TGG + chr7_2:55353216-55353235 Msa1063430:CDS 45.0%
TCCAATCGCATCTGGTACTT+TGG - chr7_2:55353220-55353239 None:intergenic 45.0%
! AAAGTACCAGATGCGATTGG+AGG + chr7_2:55353219-55353238 Msa1063430:CDS 45.0%
!! TAGGCAAACTCTGAAGCCTA+TGG - chr7_2:55353350-55353369 None:intergenic 45.0%
! CGGATGGACCATTTTGTGTT+GGG - chr7_2:55353377-55353396 None:intergenic 45.0%
! TCGGATGGACCATTTTGTGT+TGG - chr7_2:55353378-55353397 None:intergenic 45.0%
! CATGGAGCGTTTGTCCTTTA+AGG + chr7_2:55353479-55353498 Msa1063430:CDS 45.0%
GAAAGAAAGCGAGGAGTTGT+TGG - chr7_2:55353573-55353592 None:intergenic 45.0%
!! GTAGCCTTATGGATTGTGTC+GGG + chr7_2:55354806-55354825 Msa1063430:CDS 45.0%
!! GAAGTTTCTGGTTCTCCACA+TGG + chr7_2:55354868-55354887 Msa1063430:CDS 45.0%
GGAGAAGAGAATGATCCATG+TGG - chr7_2:55354886-55354905 None:intergenic 45.0%
ATCACATTCAAAGCTCGGCA+AGG + chr7_2:55355066-55355085 Msa1063430:CDS 45.0%
GAGATCAGTTTCTTTCCCCT+TGG - chr7_2:55355286-55355305 None:intergenic 45.0%
CAATTCATACGTACAGGGAG+AGG - chr7_2:55355591-55355610 None:intergenic 45.0%
! GACCACTAGCTTATTCTACC+AGG + chr7_2:55355739-55355758 Msa1063430:three_prime_UTR 45.0%
GTCCTGGTAGAATAAGCTAG+TGG - chr7_2:55355744-55355763 None:intergenic 45.0%
TCTACCAGGACTCAAGTTTG+TGG + chr7_2:55355753-55355772 Msa1063430:three_prime_UTR 45.0%
CTTCACTTGTCCCACACATT+TGG + chr7_2:55356000-55356019 Msa1063430:three_prime_UTR 45.0%
GATCTAGCCGCTCCAGATTT+AGG - chr7_2:55352720-55352739 None:intergenic 50.0%
TGAAGACATCCGAAGGTGGA+AGG - chr7_2:55353297-55353316 None:intergenic 50.0%
TCGTGTGTGGGTGTGTCTAT+AGG - chr7_2:55353657-55353676 None:intergenic 50.0%
ATAGACACACCCACACACGA+AGG + chr7_2:55353657-55353676 Msa1063430:intron 50.0%
! GAAACTCGTCACTTTCGGTG+TGG + chr7_2:55354682-55354701 Msa1063430:CDS 50.0%
GACACCCGACACAATCCATA+AGG - chr7_2:55354813-55354832 None:intergenic 50.0%
CTGGAGCGGCTAGATCTTTC+AGG + chr7_2:55352724-55352743 Msa1063430:CDS 55.0%
CAAGGAATGGGGGTTGCACG+CGG + chr7_2:55355098-55355117 Msa1063430:CDS 60.0%
GGGGGTTGCACGCGGTACCC+AGG + chr7_2:55355106-55355125 Msa1063430:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 55352585 55356084 55352585 ID=Msa1063430;Name=Msa1063430
chr7_2 mRNA 55352585 55356084 55352585 ID=Msa1063430-mRNA-1;Parent=Msa1063430;Name=Msa1063430-mRNA-1;_AED=0.07;_eAED=0.07;_QI=79|1|1|1|0.5|0.33|3|450|512
chr7_2 exon 55352585 55353554 55352585 ID=Msa1063430-mRNA-1:exon:10289;Parent=Msa1063430-mRNA-1
chr7_2 exon 55354682 55355379 55354682 ID=Msa1063430-mRNA-1:exon:10290;Parent=Msa1063430-mRNA-1
chr7_2 exon 55355685 55356084 55355685 ID=Msa1063430-mRNA-1:exon:10291;Parent=Msa1063430-mRNA-1
chr7_2 five_prime_UTR 55352585 55352663 55352585 ID=Msa1063430-mRNA-1:five_prime_utr;Parent=Msa1063430-mRNA-1
chr7_2 CDS 55352664 55353554 55352664 ID=Msa1063430-mRNA-1:cds;Parent=Msa1063430-mRNA-1
chr7_2 CDS 55354682 55355329 55354682 ID=Msa1063430-mRNA-1:cds;Parent=Msa1063430-mRNA-1
chr7_2 three_prime_UTR 55355330 55355379 55355330 ID=Msa1063430-mRNA-1:three_prime_utr;Parent=Msa1063430-mRNA-1
chr7_2 three_prime_UTR 55355685 55356084 55355685 ID=Msa1063430-mRNA-1:three_prime_utr;Parent=Msa1063430-mRNA-1
Gene Sequence

>Msa1063430

ATGGATCTGAGCAACTCAAAAAATCTGAAGATGACTCCATGTTTTGATGGAATCCTAAATCTGGAGCGGCTAGATCTTTCAGGATGCATAAACTTATCAAATGTGGATCCATCAATTGGACTTCTTACAAAACTTGCATTCTTGAGTTTGCAGAATTGTACTAGTCTAGTTAGCCTTGATTTTGGAAATGCAGCAACATTATGGTCTCTAAAAGTTCTGTGTCTCTCTGATTGCATAAAACTTGAAAAAACTCCAGATTTCAGTGGATTGAATTCTCTACAGTATCTTGATATGGATCGATGTGCAAGTTTATCCATGATTCATGAGTCTGTTGGGGCTCTTACAAATCTGAACTTCTTCAGTTTGAGAGACTGCATAAATCTTGTTGGAATACCTGACACAGCTTTCAAAACAAAAATGATTGATATGTTTAACCCATGGAGGAGTAAAGCCAAATTAAACGCTTCATTATTGACAAATATGCTGAAATACGATTCTACTAATCTCCCTCTCAAATCTTTGATTTATTTGGACTTAAGCTTTTGCAATATTTCCAAAGTACCAGATGCGATTGGAGGATTAAAGAGTTTAGAAAGACTAAATCTACAGGGAAATAAATTTACTTCAATTCCTTCCACCTTCGGATGTCTTCAAAATCTATCATATTTGAACTTGTCTCATTGCCATAGGCTTCAGAGTTTGCCTAAACTCCCAACACAAAATGGTCCATCCGATTTACTGGGAAGATATTTTGAAACAACATCTGAATCCCGTAATCATAGATCAGGATTATATATTTTTGACTCTCTCATTTGCATGGAGCGTTTGTCCTTTAAGGACGAATTTCATATCTTTAAGTTAAACAACGAATGGATACAAAGACTAGTTCAGGAAACTCGTCACTTTCGGTGTGGCTTTGACATTGTTATTCCTTGGCATGGACATGACATTTTTGAAGATTTCTTCGATTTCAAGTTTAAAGGGGGTTTGGATATAGTAAGGATAGAGGATGTTTGTAGCCTTATGGATTGTGTCGGGTGTCTCTTTTATGTAAACTTTGAAGTAAATAATTGTCATGAAGTTTCTGGTTCTCCACATGGATCATTCTCTTCTCCACTGCCACATCCTTTTTATCTTTCTTTTGAGAGTGATTACTCGGAAGAACGATTTGATATGCCACTTGATTTGGAACTAAACAAAGTTGATGGAAAAAATTATCTTTGGGTTATCTATATCTCTCGAAAACACTGCCATTTTGTAAAAACAGGAGCACATATCACATTCAAAGCTCGGCAAGGTTTGATTATCAAGGAATGGGGGTTGCACGCGGTACCCAGGAAAATCTCAGCAAAATTTATTATGGTAGATGATAGAGTATCTCTTCCTTTACAGATTGTGAAACTAGAAGAAAGAAGCAGTAGCATTGAACCTAAAATCCAACTTCCTTACAATTGGTATGTTTCTAATGAAGATGAAGTTGAGATGAATCAAGCCAAGGGGAAAGAAACTGATCTCTTTAATCTCGGCCTTTTTACTTAA
Protein sequence

>Msa1063430

MDLSNSKNLKMTPCFDGILNLERLDLSGCINLSNVDPSIGLLTKLAFLSLQNCTSLVSLDFGNAATLWSLKVLCLSDCIKLEKTPDFSGLNSLQYLDMDRCASLSMIHESVGALTNLNFFSLRDCINLVGIPDTAFKTKMIDMFNPWRSKAKLNASLLTNMLKYDSTNLPLKSLIYLDLSFCNISKVPDAIGGLKSLERLNLQGNKFTSIPSTFGCLQNLSYLNLSHCHRLQSLPKLPTQNGPSDLLGRYFETTSESRNHRSGLYIFDSLICMERLSFKDEFHIFKLNNEWIQRLVQETRHFRCGFDIVIPWHGHDIFEDFFDFKFKGGLDIVRIEDVCSLMDCVGCLFYVNFEVNNCHEVSGSPHGSFSSPLPHPFYLSFESDYSEERFDMPLDLELNKVDGKNYLWVIYISRKHCHFVKTGAHITFKARQGLIIKEWGLHAVPRKISAKFIMVDDRVSLPLQIVKLEERSSSIEPKIQLPYNWYVSNEDEVEMNQAKGKETDLFNLGLFT*