AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1065440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1065440 MtrunA17_Chr7g0246221 93.069 303 20 1 1 303 1 302 0.0 568
Msa1065440 MtrunA17_Chr7g0246131 81.518 303 56 0 1 303 1 303 3.89e-179 504
Msa1065440 MtrunA17_Chr7g0246181 80.592 304 55 3 1 303 1 301 1.78e-161 459
Msa1065440 MtrunA17_Chr7g0246151 78.146 302 64 1 1 302 1 300 5.65e-157 448
Msa1065440 MtrunA17_Chr7g0246121 70.724 304 81 4 1 302 1 298 6.35e-136 395
Msa1065440 MtrunA17_Chr1g0160851 45.035 282 150 3 1 281 1 278 5.97e-81 254
Msa1065440 MtrunA17_Chr1g0205371 43.662 284 152 6 1 281 1 279 4.00e-80 251
Msa1065440 MtrunA17_Chr5g0395331 42.960 277 153 3 27 302 30 302 4.85e-79 249
Msa1065440 MtrunA17_Chr1g0205361 44.245 278 148 4 5 281 7 278 9.13e-79 248
Msa1065440 MtrunA17_Chr4g0039901 47.541 244 125 2 24 266 24 265 1.48e-78 248
Msa1065440 MtrunA17_Chr2g0314731 44.966 298 155 5 6 303 8 296 3.10e-78 246
Msa1065440 MtrunA17_Chr2g0314721 44.224 303 162 5 1 303 12 307 3.98e-78 246
Msa1065440 MtrunA17_Chr8g0356001 43.478 299 163 4 6 303 12 305 6.32e-78 246
Msa1065440 MtrunA17_Chr8g0355961 42.809 299 165 4 6 303 12 305 1.16e-76 243
Msa1065440 MtrunA17_Chr1g0176831 45.151 299 153 6 6 303 38 326 5.14e-76 241
Msa1065440 MtrunA17_Chr5g0395321 42.034 295 146 5 17 302 17 295 6.01e-75 239
Msa1065440 MtrunA17_Chr1g0164211 40.293 273 160 2 33 305 30 299 1.49e-66 216
Msa1065440 MtrunA17_Chr1g0200961 38.516 283 164 3 1 281 2 276 5.78e-64 209
Msa1065440 MtrunA17_Chr1g0197851 38.214 280 163 4 25 303 25 295 8.93e-62 204
Msa1065440 MtrunA17_Chr1g0197881 37.582 306 176 6 1 303 1 294 9.22e-62 204
Msa1065440 MtrunA17_Chr1g0197891 37.458 299 171 5 6 303 12 295 2.72e-61 202
Msa1065440 MtrunA17_Chr5g0395381 36.964 303 141 6 9 302 9 270 3.38e-60 199
Msa1065440 MtrunA17_Chr1g0197871 35.570 298 178 4 6 303 12 295 6.40e-58 193
Msa1065440 MtrunA17_Chr7g0246141 70.796 113 31 2 202 314 2 112 3.12e-49 160
Msa1065440 MtrunA17_Chr4g0057001 34.921 252 158 2 15 266 31 276 2.78e-45 160
Msa1065440 MtrunA17_Chr2g0314771 43.827 162 89 2 69 230 1 160 1.56e-41 141
Msa1065440 MtrunA17_Chr5g0405001 32.624 282 174 5 1 280 13 280 8.12e-41 149
Msa1065440 MtrunA17_Chr7g0265611 28.772 285 197 4 17 298 29 310 4.74e-40 147
Msa1065440 MtrunA17_Chr1g0176851 41.304 184 102 4 120 303 1 178 1.09e-39 139
Msa1065440 MtrunA17_Chr1g0213671 32.584 267 171 6 17 276 17 281 1.27e-39 145
Msa1065440 MtrunA17_Chr8g0390881 31.034 290 192 3 6 295 10 291 1.87e-39 145
Msa1065440 MtrunA17_Chr6g0484841 33.203 256 160 3 27 281 30 275 3.60e-38 141
Msa1065440 MtrunA17_Chr2g0310391 32.530 249 164 3 33 281 27 271 9.95e-38 140
Msa1065440 MtrunA17_Chr8g0382901 31.317 281 181 5 6 284 468 738 1.20e-37 142
Msa1065440 MtrunA17_Chr8g0382901 32.000 250 147 4 29 276 23 251 1.38e-33 130
Msa1065440 MtrunA17_Chr2g0310381 33.071 254 165 4 29 281 22 271 1.71e-37 139
Msa1065440 MtrunA17_Chr6g0484811 32.946 258 164 3 29 283 32 283 2.00e-36 136
Msa1065440 MtrunA17_Chr4g0056951 33.610 241 158 1 41 281 51 289 3.73e-36 136
Msa1065440 MtrunA17_Chr1g0174481 28.929 280 194 2 1 280 4 278 9.55e-35 132
Msa1065440 MtrunA17_Chr5g0403351 28.571 301 186 8 1 285 1 288 4.05e-34 130
Msa1065440 MtrunA17_Chr4g0058231 28.623 276 185 5 6 277 1 268 5.58e-34 130
Msa1065440 MtrunA17_Chr8g0372251 31.020 245 158 4 35 276 36 272 1.21e-33 129
Msa1065440 MtrunA17_Chr1g0174461 29.682 283 182 6 6 280 10 283 3.49e-33 127
Msa1065440 MtrunA17_Chr3g0101751 29.268 287 186 7 6 284 12 289 2.13e-32 125
Msa1065440 MtrunA17_Chr3g0094231 30.189 265 178 5 29 291 30 289 2.84e-32 125
Msa1065440 MtrunA17_Chr1g0174471 29.508 305 202 5 6 306 28 323 3.03e-32 125
Msa1065440 MtrunA17_Chr7g0258221 29.119 261 180 3 6 266 9 264 4.21e-32 124
Msa1065440 MtrunA17_Chr3g0094171 30.882 272 180 3 14 280 15 283 5.70e-32 124
Msa1065440 MtrunA17_Chr1g0174451 27.922 308 211 6 1 303 5 306 7.18e-32 124
Msa1065440 MtrunA17_Chr3g0086691 30.795 302 201 3 7 303 3 301 9.08e-32 124
Msa1065440 MtrunA17_Chr7g0254641 28.085 235 167 1 34 266 37 271 9.19e-32 124
Msa1065440 MtrunA17_Chr3g0101621 30.034 293 184 9 9 292 5 285 1.16e-31 123
Msa1065440 MtrunA17_Chr6g0466331 30.556 288 181 6 1 280 1 277 2.60e-31 122
Msa1065440 MtrunA17_Chr1g0162801 29.348 276 176 7 15 280 12 278 3.26e-31 122
Msa1065440 MtrunA17_Chr3g0101581 28.214 280 180 8 9 280 13 279 3.62e-31 122
Msa1065440 MtrunA17_Chr3g0101631 29.252 294 190 8 1 285 1 285 4.63e-31 122
Msa1065440 MtrunA17_Chr5g0430031 29.329 283 178 5 5 280 8 275 6.24e-31 121
Msa1065440 MtrunA17_Chr6g0465511 30.208 288 182 6 1 280 1 277 6.61e-31 121
Msa1065440 MtrunA17_Chr8g0361471 30.556 288 181 6 1 280 1 277 6.81e-31 121
Msa1065440 MtrunA17_Chr5g0445751 31.955 266 162 9 21 281 32 283 7.16e-31 118
Msa1065440 MtrunA17_Chr3g0101801 28.986 276 177 8 14 280 20 285 1.30e-30 120
Msa1065440 MtrunA17_Chr4g0035921 25.830 271 185 4 8 270 3 265 2.56e-30 120
Msa1065440 MtrunA17_Chr5g0430101 29.856 278 183 4 5 281 7 273 4.11e-30 119
Msa1065440 MtrunA17_Chr3g0101601 30.263 304 187 11 1 292 1 291 7.19e-30 118
Msa1065440 MtrunA17_Chr1g0174421 26.408 284 192 6 34 310 47 320 8.79e-30 115
Msa1065440 MtrunA17_Chr8g0344181 31.923 260 168 4 34 291 38 290 1.03e-29 118
Msa1065440 MtrunA17_Chr3g0086661 31.418 261 174 2 7 262 3 263 1.97e-29 117
Msa1065440 MtrunA17_Chr3g0101671 29.630 297 176 9 1 280 1 281 2.25e-29 117
Msa1065440 MtrunA17_Chr3g0086651 31.418 261 174 2 7 262 3 263 2.33e-29 117
Msa1065440 MtrunA17_Chr3g0101821 28.782 271 178 6 17 280 16 278 2.50e-29 117
Msa1065440 MtrunA17_Chr8g0357421 29.078 282 185 6 6 280 5 278 7.60e-29 115
Msa1065440 MtrunA17_Chr4g0058191 26.087 276 194 4 6 280 1 267 9.60e-29 115
Msa1065440 MtrunA17_Chr1g0156081 26.804 291 203 6 4 284 26 316 1.10e-28 115
Msa1065440 MtrunA17_Chr5g0403321 29.200 250 164 4 33 277 33 274 1.30e-28 115
Msa1065440 MtrunA17_Chr4g0061381 29.801 302 199 4 8 303 4 298 1.41e-28 115
Msa1065440 MtrunA17_Chr3g0101611 28.517 263 168 5 26 280 30 280 2.16e-28 114
Msa1065440 MtrunA17_Chr5g0401691 28.077 260 175 4 4 258 23 275 2.36e-28 114
Msa1065440 MtrunA17_Chr1g0156061 33.831 201 124 4 24 215 45 245 2.47e-28 114
Msa1065440 MtrunA17_Chr1g0156101 26.199 271 190 6 24 284 22 292 3.14e-28 114
Msa1065440 MtrunA17_Chr3g0101761 27.208 283 190 7 6 280 4 278 3.40e-28 114
Msa1065440 MtrunA17_Chr3g0101721 29.259 270 172 6 23 284 26 284 4.50e-28 113
Msa1065440 MtrunA17_Chr8g0357431 28.030 264 176 5 6 263 5 260 6.11e-28 113
Msa1065440 MtrunA17_Chr3g0116741 28.205 273 184 6 9 276 26 291 6.38e-28 113
Msa1065440 MtrunA17_Chr8g0344151 29.104 268 185 3 15 280 17 281 7.26e-28 113
Msa1065440 MtrunA17_Chr3g0101691 25.939 293 201 6 1 285 1 285 1.48e-27 112
Msa1065440 MtrunA17_Chr5g0430111 29.927 274 168 7 26 289 29 288 1.64e-27 111
Msa1065440 MtrunA17_Chr1g0162811 27.007 274 189 4 6 277 9 273 1.84e-27 111
Msa1065440 MtrunA17_Chr3g0116681 29.553 291 182 9 6 291 15 287 2.19e-27 111
Msa1065440 MtrunA17_Chr4g0058281 25.714 280 200 3 12 287 24 299 3.12e-27 111
Msa1065440 MtrunA17_Chr5g0445461 25.357 280 191 8 6 280 10 276 6.87e-27 110
Msa1065440 MtrunA17_Chr1g0167321 29.032 279 179 6 12 280 6 275 8.97e-27 109
Msa1065440 MtrunA17_Chr8g0344191 28.832 274 189 4 10 280 44 314 1.18e-26 109
Msa1065440 MtrunA17_Chr3g0101811 29.572 257 161 6 15 264 18 261 1.51e-26 109
Msa1065440 MtrunA17_Chr4g0058201 27.308 260 177 6 26 280 17 269 1.92e-26 108
Msa1065440 MtrunA17_Chr4g0011861 27.799 259 174 7 26 276 20 273 2.10e-26 106
Msa1065440 MtrunA17_Chr6g0463611 26.646 319 212 7 6 314 21 327 2.17e-26 106
Msa1065440 MtrunA17_Chr4g0076161 28.996 269 173 5 23 284 26 283 2.75e-26 108
Msa1065440 MtrunA17_Chr4g0011921 25.357 280 192 7 6 280 6 273 3.04e-26 108
Msa1065440 MtrunA17_Chr4g0011881 25.758 264 185 5 18 276 15 272 3.35e-26 108
Msa1065440 MtrunA17_Chr5g0406651 28.244 262 182 5 18 276 15 273 3.44e-26 108
Msa1065440 MtrunA17_Chr3g0101571 29.146 199 129 4 31 227 33 221 4.05e-26 107
Msa1065440 MtrunA17_Chr3g0101711 28.571 231 153 4 1 227 1 223 5.43e-26 107
Msa1065440 MtrunA17_Chr1g0174441 27.097 310 208 8 6 306 29 329 1.12e-25 107
Msa1065440 MtrunA17_Chr3g0101831 29.954 217 137 4 15 227 18 223 1.20e-25 106
Msa1065440 MtrunA17_Chr4g0030701 27.451 255 174 4 35 281 36 287 1.38e-25 106
Msa1065440 MtrunA17_Chr6g0463791 28.679 265 172 4 5 262 6 260 1.41e-25 106
Msa1065440 MtrunA17_Chr5g0419691 27.132 258 176 6 26 276 20 272 1.83e-25 105
Msa1065440 MtrunA17_Chr5g0430081 31.179 263 170 5 20 281 22 274 2.19e-25 105
Msa1065440 MtrunA17_Chr4g0011901 27.165 254 179 5 29 280 24 273 2.27e-25 105
Msa1065440 MtrunA17_Chr5g0401681 26.744 258 179 4 18 265 12 269 2.50e-25 105
Msa1065440 MtrunA17_Chr5g0431641 26.715 277 187 7 8 280 12 276 2.62e-25 105
Msa1065440 MtrunA17_Chr4g0011961 27.106 273 194 4 7 276 1 271 3.32e-25 105
Msa1065440 MtrunA17_Chr7g0224551 27.083 288 188 6 4 282 2 276 6.56e-25 104
Msa1065440 MtrunA17_Chr4g0011871 28.571 259 172 7 26 276 20 273 6.67e-25 104
Msa1065440 MtrunA17_Chr4g0052881 26.800 250 177 1 18 261 16 265 7.39e-25 104
Msa1065440 MtrunA17_Chr4g0011931 26.122 245 176 4 35 276 30 272 8.14e-25 101
Msa1065440 MtrunA17_Chr4g0047641 25.083 303 213 7 6 299 17 314 1.03e-24 103
Msa1065440 MtrunA17_Chr3g0101651 28.077 260 172 6 32 284 36 287 1.28e-24 103
Msa1065440 MtrunA17_Chr5g0430091 28.374 289 195 5 5 289 8 288 1.35e-24 103
Msa1065440 MtrunA17_Chr4g0047661 24.483 290 206 6 18 299 31 315 1.38e-24 103
Msa1065440 MtrunA17_Chr7g0224561 27.376 263 174 5 4 265 2 248 1.98e-24 103
Msa1065440 MtrunA17_Chr1g0176861 56.322 87 35 1 6 92 12 95 2.60e-24 94.7
Msa1065440 MtrunA17_Chr2g0310371 32.192 146 99 0 7 152 1 146 2.87e-24 96.3
Msa1065440 MtrunA17_Chr3g0101661 27.402 281 189 6 5 280 8 278 2.93e-24 102
Msa1065440 MtrunA17_Chr5g0446161 33.529 170 108 3 24 190 29 196 3.18e-24 102
Msa1065440 MtrunA17_Chr4g0046691 26.692 266 184 4 30 291 35 293 7.70e-24 99.0
Msa1065440 MtrunA17_Chr5g0403331 26.766 269 184 6 1 264 1 261 9.60e-24 101
Msa1065440 MtrunA17_Chr7g0235551 27.240 279 195 5 5 281 8 280 9.74e-24 101
Msa1065440 MtrunA17_Chr4g0047631 24.818 274 188 5 18 283 32 295 1.30e-23 100
Msa1065440 MtrunA17_Chr6g0463801 30.738 244 153 6 26 266 29 259 2.42e-23 100
Msa1065440 MtrunA17_Chr4g0020041 28.251 223 150 3 6 227 9 222 3.48e-23 99.8
Msa1065440 MtrunA17_Chr5g0446151 29.134 254 158 7 24 269 31 270 3.76e-23 99.4
Msa1065440 MtrunA17_Chr3g0101731 26.523 279 183 7 6 274 4 270 5.88e-23 99.0
Msa1065440 MtrunA17_Chr3g0084921 22.951 305 224 4 8 306 10 309 7.10e-23 98.6
Msa1065440 MtrunA17_Chr8g0362701 27.642 246 167 3 41 280 42 282 1.07e-22 98.2
Msa1065440 MtrunA17_Chr7g0218601 25.540 278 187 7 18 284 15 283 1.22e-22 97.8
Msa1065440 MtrunA17_Chr4g0052861 23.048 269 196 3 18 281 16 278 1.40e-22 97.8
Msa1065440 MtrunA17_Chr4g0058261 28.980 245 166 4 20 261 49 288 1.49e-22 97.8
Msa1065440 MtrunA17_Chr3g0101701 26.295 251 173 5 34 280 38 280 1.55e-22 97.8
Msa1065440 MtrunA17_Chr1g0207851 28.641 206 142 3 55 259 59 260 2.30e-22 95.9
Msa1065440 MtrunA17_Chr1g0207841 27.805 205 146 1 55 259 59 261 2.51e-22 97.1
Msa1065440 MtrunA17_Chr3g0105751 25.000 304 212 6 8 298 16 316 3.20e-22 95.9
Msa1065440 MtrunA17_Chr2g0280261 27.888 251 163 5 23 269 23 259 3.25e-22 96.7
Msa1065440 MtrunA17_Chr4g0053621 25.260 289 193 5 3 281 6 281 3.49e-22 96.7
Msa1065440 MtrunA17_Chr5g0445451 24.296 284 189 10 6 280 10 276 3.63e-22 96.7
Msa1065440 MtrunA17_Chr5g0430131 25.763 295 205 5 1 289 1 287 4.83e-22 96.3
Msa1065440 MtrunA17_Chr4g0030711 27.149 221 154 3 55 274 58 272 5.19e-22 96.3
Msa1065440 MtrunA17_Chr4g0046631 25.862 290 190 6 8 282 19 298 6.69e-22 95.9
Msa1065440 MtrunA17_Chr1g0160861 38.806 134 72 4 168 300 9 133 1.20e-21 93.6
Msa1065440 MtrunA17_Chr5g0423601 51.282 78 38 0 120 197 4 81 1.47e-21 87.4
Msa1065440 MtrunA17_Chr6g0451741 23.899 318 220 7 5 302 32 347 2.11e-21 94.7
Msa1065440 MtrunA17_Chr4g0030741 27.273 242 162 4 43 281 73 303 5.01e-21 92.0
Msa1065440 MtrunA17_Chr7g0218611 26.236 263 177 6 30 284 29 282 5.79e-21 93.2
Msa1065440 MtrunA17_Chr4g0039391 31.140 228 143 6 41 259 42 264 6.77e-21 92.8
Msa1065440 MtrunA17_Chr7g0255531 23.826 298 205 8 6 287 1 292 6.97e-21 92.8
Msa1065440 MtrunA17_Chr4g0052851 29.339 242 164 4 18 258 17 252 1.18e-20 92.0
Msa1065440 MtrunA17_Chr5g0423611 50.602 83 37 2 214 296 1 79 1.26e-20 84.3
Msa1065440 MtrunA17_Chr5g0445531 25.098 255 167 7 34 280 38 276 1.52e-20 92.0
Msa1065440 MtrunA17_Chr3g0107561 24.172 302 214 5 7 298 18 314 1.84e-20 90.1
Msa1065440 MtrunA17_Chr5g0431671 25.000 252 172 7 34 280 38 277 2.52e-20 91.3
Msa1065440 MtrunA17_Chr4g0011981 24.096 249 183 4 35 281 30 274 2.85e-20 90.9
Msa1065440 MtrunA17_Chr8g0362481 29.381 194 123 3 69 257 1 185 3.26e-20 90.5
Msa1065440 MtrunA17_Chr5g0445441 23.549 293 180 9 6 280 51 317 3.74e-20 90.9
Msa1065440 MtrunA17_Chr5g0445421 25.668 187 135 2 6 190 84 268 7.23e-20 90.1
Msa1065440 MtrunA17_Chr5g0430171 35.821 134 86 0 26 159 29 162 7.54e-20 86.7
Msa1065440 MtrunA17_Chr5g0445411 27.647 170 117 2 1 164 8 177 1.08e-19 84.7
Msa1065440 MtrunA17_Chr3g0117321 34.711 121 79 0 32 152 5 125 1.47e-19 82.8
Msa1065440 MtrunA17_Chr4g0046671 22.807 285 197 5 23 290 30 308 1.47e-19 87.4
Msa1065440 MtrunA17_Chr5g0445381 25.260 289 185 10 10 283 41 313 2.22e-19 88.6
Msa1065440 MtrunA17_Chr8g0370641 27.632 304 186 11 17 298 21 312 2.30e-19 88.6
Msa1065440 MtrunA17_Chr8g0377341 27.547 265 178 8 20 281 57 310 4.36e-19 87.8
Msa1065440 MtrunA17_Chr5g0432751 29.021 286 175 11 12 282 14 286 4.64e-19 87.4
Msa1065440 MtrunA17_Chr3g0107611 24.324 296 203 5 7 284 23 315 6.21e-19 87.0
Msa1065440 MtrunA17_Chr2g0296661 29.646 226 151 3 41 258 39 264 6.28e-19 87.0
Msa1065440 MtrunA17_Chr6g0451641 26.159 302 204 10 17 303 22 319 6.95e-19 87.0
Msa1065440 MtrunA17_Chr4g0017411 27.642 246 163 5 18 258 14 249 7.21e-19 87.0
Msa1065440 MtrunA17_Chr5g0431631 30.405 148 77 3 8 141 24 159 9.17e-19 82.0
Msa1065440 MtrunA17_Chr5g0402971 24.161 298 213 6 4 290 11 306 2.63e-18 84.0
Msa1065440 MtrunA17_Chr4g0047691 23.051 295 197 6 6 284 19 299 2.70e-18 85.1
Msa1065440 MtrunA17_Chr4g0024771 24.911 281 187 10 10 280 10 276 3.64e-18 84.7
Msa1065440 MtrunA17_Chr6g0451801 23.826 298 206 6 11 287 13 310 3.68e-18 83.6
Msa1065440 MtrunA17_Chr4g0046331 26.316 285 179 9 6 278 1 266 4.53e-18 84.7
Msa1065440 MtrunA17_Chr5g0445541 38.776 98 54 2 10 101 10 107 4.89e-18 79.3
Msa1065440 MtrunA17_Chr6g0451681 29.897 194 126 5 5 194 35 222 5.82e-18 84.3
Msa1065440 MtrunA17_Chr6g0451781 25.194 258 172 7 41 281 81 334 6.19e-18 84.3
Msa1065440 MtrunA17_Chr6g0466941 25.773 291 197 7 15 287 14 303 1.21e-17 83.2
Msa1065440 MtrunA17_Chr2g0296651 25.362 276 191 7 14 280 8 277 1.39e-17 83.2
Msa1065440 MtrunA17_Chr1g0198191 24.153 236 165 6 3 232 16 243 1.57e-17 83.2
Msa1065440 MtrunA17_Chr8g0370651 27.304 293 181 10 26 298 36 316 1.58e-17 83.2
Msa1065440 MtrunA17_Chr3g0101741 24.883 213 151 3 69 280 1 205 1.95e-17 82.4
Msa1065440 MtrunA17_Chr4g0046321 26.693 251 158 8 35 278 35 266 1.95e-17 82.8
Msa1065440 MtrunA17_Chr2g0304871 23.755 261 183 5 33 281 36 292 2.07e-17 82.8
Msa1065440 MtrunA17_Chr4g0008101 24.756 307 210 8 16 303 22 326 2.41e-17 82.4
Msa1065440 MtrunA17_Chr4g0046351 26.772 254 160 8 35 281 35 269 2.70e-17 82.4
Msa1065440 MtrunA17_Chr5g0419451 25.806 279 186 11 26 299 52 314 5.30e-17 81.3
Msa1065440 MtrunA17_Chr6g0466901 24.915 293 196 9 15 287 14 302 8.67e-17 80.9
Msa1065440 MtrunA17_Chr6g0451751 23.148 324 222 10 1 303 9 326 1.48e-16 80.1
Msa1065440 MtrunA17_Chr5g0430051 44.330 97 54 0 5 101 9 105 2.24e-16 73.9
Msa1065440 MtrunA17_Chr6g0451691 22.291 323 228 7 1 302 9 329 2.64e-16 79.3
Msa1065440 MtrunA17_Chr5g0431511 26.515 264 168 8 34 284 33 283 5.25e-16 78.6
Msa1065440 MtrunA17_Chr6g0472311 21.479 284 212 5 6 280 12 293 5.25e-16 78.6
Msa1065440 MtrunA17_Chr8g0339331 23.667 300 210 8 22 305 23 319 1.21e-14 74.3
Msa1065440 MtrunA17_Chr6g0458561 24.204 314 211 10 10 305 28 332 2.77e-14 73.2
Msa1065440 MtrunA17_Chr6g0477081 30.968 155 93 4 157 300 1 152 3.25e-14 71.2
Msa1065440 MtrunA17_Chr5g0431501 24.535 269 167 10 34 284 33 283 9.06e-14 71.6
Msa1065440 MtrunA17_Chr5g0431461 24.535 269 167 10 34 284 33 283 9.06e-14 71.6
Msa1065440 MtrunA17_Chr8g0339311 23.571 280 198 8 28 297 38 311 2.45e-13 70.5
Msa1065440 MtrunA17_Chr7g0258211 26.119 268 192 3 6 268 9 275 2.51e-13 70.5
Msa1065440 MtrunA17_Chr2g0334021 27.778 216 141 5 28 230 27 240 4.40e-13 69.7
Msa1065440 MtrunA17_Chr3g0107541 23.047 256 179 5 43 284 59 310 6.13e-13 69.3
Msa1065440 MtrunA17_Chr5g0444971 39.024 82 50 0 80 161 1 82 1.84e-12 62.4
Msa1065440 MtrunA17_Chr1g0210091 27.451 204 123 7 43 232 74 266 1.09e-11 65.5
Msa1065440 MtrunA17_Chr3g0082701 22.000 300 212 7 10 287 12 311 7.70e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1065440 AT2G45550.1 40.260 308 174 7 1 303 4 306 4.41e-66 216
Msa1065440 AT2G45560.2 37.072 321 193 5 1 316 4 320 8.74e-66 209
Msa1065440 AT2G45560.1 37.785 307 183 4 1 303 4 306 1.23e-64 212
Msa1065440 AT3G61040.2 39.928 278 159 2 26 303 25 294 1.52e-63 206
Msa1065440 AT3G61040.1 39.928 278 159 2 26 303 25 294 5.72e-62 205
Msa1065440 AT2G45580.3 40.152 264 151 2 44 303 48 308 6.22e-62 202
Msa1065440 AT1G33720.1 39.643 280 161 4 4 276 7 285 1.18e-61 204
Msa1065440 AT2G45580.1 40.152 264 151 2 44 303 48 308 1.27e-60 202
Msa1065440 AT2G45560.3 40.928 237 138 2 1 235 4 240 6.92e-60 192
Msa1065440 AT2G45570.1 38.491 265 155 5 43 303 47 307 1.13e-54 186
Msa1065440 AT3G52970.1 34.915 295 187 4 8 298 10 303 1.28e-53 183
Msa1065440 AT3G52970.2 33.333 309 187 4 8 298 10 317 1.21e-51 178
Msa1065440 AT4G12320.1 33.453 278 178 2 3 280 18 288 3.13e-44 158
Msa1065440 AT4G12300.1 33.992 253 163 1 16 268 28 276 8.09e-41 149
Msa1065440 AT5G06900.1 31.522 276 189 0 9 284 9 284 3.60e-37 139
Msa1065440 AT4G12310.1 33.813 278 177 2 3 280 20 290 4.87e-36 136
Msa1065440 AT5G07990.1 28.904 301 202 5 8 303 4 297 2.68e-35 134
Msa1065440 AT4G12330.1 31.560 282 186 4 7 284 19 297 1.27e-32 126
Msa1065440 AT5G44620.1 29.839 248 173 1 43 290 55 301 1.46e-32 126
Msa1065440 AT5G57260.1 28.125 256 172 4 29 280 25 272 6.79e-32 124
Msa1065440 AT5G25120.1 28.000 275 184 6 8 280 6 268 7.75e-32 124
Msa1065440 AT4G36220.1 31.278 227 146 4 41 266 47 264 1.91e-31 123
Msa1065440 AT4G13770.1 28.794 257 176 4 7 262 4 254 5.94e-31 122
Msa1065440 AT3G61035.1 31.321 265 159 9 43 302 51 297 1.50e-30 118
Msa1065440 AT5G25140.1 26.715 277 186 5 6 280 7 268 2.17e-30 120
Msa1065440 AT5G25130.1 27.059 255 176 4 1 253 1 247 2.09e-29 117
Msa1065440 AT1G33730.1 38.596 171 99 3 135 303 4 170 2.33e-29 115
Msa1065440 AT1G33730.2 38.596 171 99 3 135 303 4 170 2.33e-29 115
Msa1065440 AT3G26320.1 31.683 202 136 1 26 227 23 222 4.53e-29 116
Msa1065440 AT3G48280.1 25.000 280 190 6 6 281 2 265 9.11e-29 115
Msa1065440 AT3G26300.1 27.381 252 163 3 26 277 23 254 2.10e-28 114
Msa1065440 AT4G31500.1 28.315 279 188 5 6 279 3 274 1.13e-27 112
Msa1065440 AT2G30770.1 26.984 252 177 5 34 284 33 278 1.31e-27 112
Msa1065440 AT2G30750.1 27.481 262 183 5 25 285 24 279 2.58e-27 111
Msa1065440 AT5G25180.1 25.830 271 189 5 13 280 7 268 2.88e-27 111
Msa1065440 AT5G04330.1 29.435 248 169 5 35 280 33 276 2.24e-26 109
Msa1065440 AT4G22710.1 26.941 219 159 1 43 260 62 280 2.27e-26 109
Msa1065440 AT4G22690.1 27.027 259 188 1 3 260 53 311 2.82e-26 109
Msa1065440 AT3G48270.1 25.806 279 191 8 23 299 21 285 3.19e-26 108
Msa1065440 AT3G48320.1 25.658 304 203 8 4 305 10 292 3.47e-26 108
Msa1065440 AT3G26310.1 29.302 215 145 2 18 227 9 221 3.96e-26 108
Msa1065440 AT2G02580.1 32.143 224 147 2 7 227 1 222 5.14e-26 108
Msa1065440 AT3G26330.1 31.088 193 131 1 35 227 32 222 1.57e-25 106
Msa1065440 AT3G26290.2 29.381 194 135 1 36 229 46 237 1.47e-24 103
Msa1065440 AT3G26290.1 29.381 194 135 1 36 229 33 224 1.48e-24 103
Msa1065440 AT3G26170.1 26.014 296 191 9 7 291 8 286 1.60e-24 103
Msa1065440 AT1G33720.4 37.908 153 89 2 129 276 2 153 2.78e-24 102
Msa1065440 AT1G33720.3 37.908 153 89 2 129 276 2 153 2.78e-24 102
Msa1065440 AT1G33720.5 37.908 153 89 2 129 276 2 153 2.78e-24 102
Msa1065440 AT1G01280.1 25.940 266 185 4 41 301 39 297 3.59e-24 102
Msa1065440 AT1G33720.2 37.908 153 89 2 129 276 2 153 3.63e-24 102
Msa1065440 AT5G06905.1 24.254 268 200 2 17 284 14 278 8.17e-24 102
Msa1065440 AT3G26190.1 25.806 279 200 5 33 306 27 303 1.06e-23 101
Msa1065440 AT1G11610.1 24.691 243 179 4 27 268 26 265 3.16e-23 100
Msa1065440 AT1G11610.2 24.691 243 179 4 27 268 26 265 3.73e-23 99.8
Msa1065440 AT3G48290.1 23.404 282 190 7 26 299 24 287 3.93e-23 99.8
Msa1065440 AT3G48290.2 23.404 282 190 7 26 299 24 287 4.44e-23 99.8
Msa1065440 AT3G48310.1 22.932 266 192 5 35 299 33 286 4.76e-23 99.4
Msa1065440 AT5G57220.1 26.829 287 171 13 34 294 30 303 6.50e-23 99.0
Msa1065440 AT5G67310.1 26.236 263 173 7 1 250 12 266 8.27e-23 99.0
Msa1065440 AT5G42590.1 24.427 262 188 5 7 266 9 262 1.56e-22 98.2
Msa1065440 AT3G48300.1 24.815 270 180 7 36 299 31 283 2.35e-22 97.4
Msa1065440 AT3G48300.2 24.815 270 180 7 36 299 33 285 2.37e-22 97.4
Msa1065440 AT4G37340.1 25.887 282 187 10 1 271 1 271 5.79e-22 96.3
Msa1065440 AT3G44250.1 26.667 255 172 4 33 279 27 274 7.61e-22 95.9
Msa1065440 AT3G26180.1 24.658 292 196 7 9 291 10 286 1.36e-21 95.5
Msa1065440 AT4G37310.1 26.214 309 211 9 6 305 5 305 1.85e-21 95.1
Msa1065440 AT2G45580.2 34.615 156 95 2 152 303 2 154 4.25e-21 92.8
Msa1065440 AT2G40890.1 24.345 267 189 5 33 287 26 291 8.89e-21 92.8
Msa1065440 AT3G53280.1 26.400 250 178 3 33 279 27 273 9.03e-21 92.8
Msa1065440 AT2G24180.1 28.351 194 137 1 34 227 36 227 1.01e-20 92.8
Msa1065440 AT3G26200.1 24.126 286 210 4 26 306 20 303 1.35e-20 92.4
Msa1065440 AT3G10560.1 26.148 283 191 9 26 301 38 309 1.37e-20 92.4
Msa1065440 AT5G24950.1 24.895 237 174 3 27 262 25 258 1.51e-20 92.4
Msa1065440 AT4G37430.1 25.316 237 161 7 34 258 28 260 3.02e-20 91.3
Msa1065440 AT4G13290.1 25.292 257 183 6 26 280 25 274 5.16e-20 90.5
Msa1065440 AT4G13310.2 22.800 250 182 6 34 280 32 273 5.70e-20 89.7
Msa1065440 AT3G26280.2 25.830 271 193 4 18 284 35 301 7.45e-20 90.5
Msa1065440 AT4G20240.2 27.863 262 176 6 21 280 22 272 7.82e-20 89.7
Msa1065440 AT4G20240.1 27.863 262 176 6 21 280 22 272 8.44e-20 89.7
Msa1065440 AT3G26280.1 25.830 271 193 4 18 284 18 284 8.46e-20 90.1
Msa1065440 AT4G13310.1 22.800 250 182 6 34 280 32 273 9.46e-20 90.1
Msa1065440 AT5G10610.1 27.899 276 175 10 7 268 6 271 1.39e-19 89.4
Msa1065440 AT5G05260.2 26.408 284 183 9 34 298 40 316 4.21e-19 88.2
Msa1065440 AT3G53300.1 27.132 258 168 4 33 279 27 275 4.74e-19 87.8
Msa1065440 AT4G31970.1 26.277 274 184 7 17 274 12 283 1.04e-18 87.0
Msa1065440 AT4G37360.1 24.681 235 163 7 4 229 2 231 1.76e-18 86.3
Msa1065440 AT5G24960.2 25.532 235 161 5 34 262 33 259 2.85e-18 85.1
Msa1065440 AT5G10600.1 27.027 259 166 7 8 250 21 272 4.80e-18 85.1
Msa1065440 AT1G13110.1 27.602 221 154 2 7 227 10 224 5.38e-18 84.7
Msa1065440 AT5G24960.1 25.532 235 161 5 34 262 33 259 5.82e-18 84.7
Msa1065440 AT4G37400.1 24.638 207 150 4 55 258 52 255 6.21e-18 84.7
Msa1065440 AT2G46660.1 23.333 270 187 8 23 285 59 315 8.36e-18 84.3
Msa1065440 AT5G04630.1 25.561 223 154 5 16 232 20 236 8.83e-18 84.0
Msa1065440 AT1G13080.1 28.319 226 156 2 5 227 2 224 2.13e-17 82.8
Msa1065440 AT5G05260.1 26.360 239 155 6 34 254 40 275 2.87e-17 82.4
Msa1065440 AT3G26270.1 27.108 166 121 0 26 191 24 189 7.68e-17 81.3
Msa1065440 AT4G31940.1 25.338 296 199 7 17 295 12 302 7.78e-17 81.3
Msa1065440 AT4G37410.1 24.878 205 146 4 34 232 30 232 9.16e-17 81.3
Msa1065440 AT1G74110.1 27.208 283 170 13 36 299 65 330 1.24e-16 80.9
Msa1065440 AT3G26160.1 23.490 298 196 8 7 291 8 286 2.52e-16 79.7
Msa1065440 AT1G13090.1 27.778 162 117 0 33 194 27 188 3.69e-16 77.8
Msa1065440 AT5G35917.1 25.175 286 186 9 34 298 42 320 4.59e-16 79.0
Msa1065440 AT5G25900.1 24.715 263 174 6 31 278 43 296 1.04e-15 77.8
Msa1065440 AT4G37330.1 26.459 257 169 8 7 250 6 255 1.12e-15 77.8
Msa1065440 AT1G13090.2 27.778 162 117 0 33 194 27 188 1.41e-15 77.4
Msa1065440 AT3G61035.4 34.351 131 78 4 176 302 59 185 1.59e-15 74.7
Msa1065440 AT3G61035.3 34.351 131 78 4 176 302 59 185 1.59e-15 74.7
Msa1065440 AT2G42250.1 24.242 264 183 6 1 257 5 258 1.77e-15 77.4
Msa1065440 AT3G61035.2 34.351 131 78 4 176 302 59 185 2.32e-15 75.1
Msa1065440 AT2G23220.1 25.121 207 145 5 34 232 46 250 2.97e-15 76.6
Msa1065440 AT1G74540.1 26.633 199 116 5 27 210 20 203 3.02e-15 76.6
Msa1065440 AT3G61880.2 24.609 256 181 8 29 279 61 309 3.10e-15 76.6
Msa1065440 AT3G61880.1 24.609 256 181 8 29 279 61 309 3.22e-15 76.6
Msa1065440 AT3G26230.1 26.244 221 155 3 9 227 3 217 4.89e-15 75.9
Msa1065440 AT2G23190.1 24.891 229 156 6 14 230 53 277 5.07e-15 75.9
Msa1065440 AT3G26150.1 24.667 300 190 10 7 291 8 286 5.34e-15 75.9
Msa1065440 AT3G20140.1 26.425 193 136 2 20 211 28 215 1.11e-14 74.7
Msa1065440 AT3G26210.1 31.210 157 108 0 41 197 38 194 1.32e-14 74.7
Msa1065440 AT3G03470.1 29.050 179 112 5 30 202 27 196 1.54e-14 74.3
Msa1065440 AT3G26220.1 24.382 283 202 5 5 282 2 277 3.69e-14 73.2
Msa1065440 AT3G26830.1 27.041 196 140 2 33 227 27 220 5.01e-14 72.8
Msa1065440 AT4G31950.1 25.180 278 179 9 12 274 9 272 1.14e-13 72.0
Msa1065440 AT5G04660.1 24.057 212 151 5 51 259 61 265 4.85e-13 70.1
Msa1065440 AT3G26180.2 40.476 84 45 2 9 92 10 88 6.94e-13 68.9
Msa1065440 AT4G15360.1 28.902 173 110 4 34 197 40 208 8.64e-13 69.3
Msa1065440 AT1G58260.1 22.348 264 184 6 33 280 36 294 6.17e-12 66.6
Msa1065440 AT4G15330.1 27.072 181 127 2 6 185 14 190 6.80e-12 66.6
Msa1065440 AT1G74550.1 22.381 210 132 5 29 225 22 213 7.19e-12 66.2
Msa1065440 AT5G36220.1 22.013 318 215 9 4 294 3 314 1.05e-11 65.9
Msa1065440 AT3G10570.1 25.405 185 129 4 51 232 63 241 1.28e-11 65.5
Msa1065440 AT3G20940.1 27.097 155 112 1 22 175 30 184 1.33e-11 65.5
Msa1065440 AT3G20120.4 23.529 255 186 6 55 308 63 309 2.46e-11 64.7
Msa1065440 AT4G39950.2 27.007 274 177 11 5 260 63 331 4.30e-11 63.9
Msa1065440 AT4G39950.1 25.786 318 207 13 5 299 23 334 5.34e-11 63.9
Msa1065440 AT1G16410.2 25.989 177 127 3 3 175 13 189 5.84e-11 63.5
Msa1065440 AT1G16410.1 25.989 177 127 3 3 175 13 189 8.61e-11 63.2
Msa1065440 AT3G20110.1 22.491 289 204 9 2 282 7 283 8.65e-11 63.2

Find 53 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCACACCATTTCCCATTAT+TGG 0.112053 7_2:-59140934 Msa1065440:CDS
CTACTCTATTAGAGAATATT+TGG 0.129770 7_2:+59140761 None:intergenic
GGAGATGGTGCATCTGTTTC+TGG 0.159398 7_2:-59140158 Msa1065440:CDS
GTGGAAGCTTGGTAGAATTT+TGG 0.177271 7_2:+59140962 None:intergenic
ACAAAAGTTGCAAGAATTAT+TGG 0.177772 7_2:-59140593 Msa1065440:CDS
TTCTAAGATGTTTCCAATAA+TGG 0.190888 7_2:+59140921 None:intergenic
CAAGAGTTTAAGAAAATTAT+TGG 0.199655 7_2:-59140436 Msa1065440:CDS
TACTTTGTTCTCTATTGATT+TGG 0.268625 7_2:-59140485 Msa1065440:CDS
TCTAAGATGTTTCCAATAAT+GGG 0.301231 7_2:+59140922 None:intergenic
CTTAATAGCAACAATATTAT+CGG 0.316638 7_2:-59140208 Msa1065440:CDS
GGAAAGAAATCTGAAACATT+AGG 0.325072 7_2:+59140388 None:intergenic
GATCATCACAAATTCTCAAT+AGG 0.328974 7_2:-59140715 Msa1065440:CDS
GAAAATTATTGGGAGTTTCA+TGG 0.342473 7_2:-59140425 Msa1065440:CDS
TAGAAGTGTTTGGTGATTCA+TGG 0.344256 7_2:+59141047 None:intergenic
AAGAGTTTAAGAAAATTATT+GGG 0.363650 7_2:-59140435 Msa1065440:CDS
ATCTTCCAAAGTCGATTCTA+AGG 0.374895 7_2:-59140257 Msa1065440:CDS
GGATCAAAGGGACGAAGAAT+TGG 0.399949 7_2:+59140367 None:intergenic
TAGCTTTGTGGAAGAAACTA+AGG 0.431419 7_2:-59140678 Msa1065440:CDS
CACTTCCAACATTAGCTTTG+TGG 0.431713 7_2:-59140690 Msa1065440:CDS
ATCATCACAAATTCTCAATA+GGG 0.431899 7_2:-59140714 Msa1065440:CDS
TAATGTCATGATTGGTCCAT+AGG 0.437677 7_2:+59140855 None:intergenic
TTGTGGTGATGAGATTACTA+TGG 0.447151 7_2:+59140813 None:intergenic
TACTCTATTAGAGAATATTT+GGG 0.448160 7_2:+59140762 None:intergenic
ATGGGAAATGGTGTGGGCCC+TGG 0.461603 7_2:+59140940 None:intergenic
ATGTTTCCAATAATGGGAAA+TGG 0.468862 7_2:+59140928 None:intergenic
ATCTTTGCATGCACACCTTG+TGG 0.470899 7_2:+59140346 None:intergenic
TGTGGGCCCTGGTGGAAGCT+TGG 0.476398 7_2:+59140951 None:intergenic
ATTGGAAACATCTTAGAACT+TGG 0.483421 7_2:-59140916 Msa1065440:CDS
TTCTTCCACAAAGCTAATGT+TGG 0.511647 7_2:+59140685 None:intergenic
TGCACACCTTGTGGATCAAA+GGG 0.511685 7_2:+59140355 None:intergenic
TAACCACTAGTAGAAGTGTT+TGG 0.513956 7_2:+59141037 None:intergenic
AATTCTACCAAGCTTCCACC+AGG 0.519634 7_2:-59140958 Msa1065440:CDS
AACACTTGTTTGGCTAGTTG+TGG 0.523123 7_2:+59140796 None:intergenic
GTACACCTTAGAATCGACTT+TGG 0.528240 7_2:+59140252 None:intergenic
ATGCACACCTTGTGGATCAA+AGG 0.528583 7_2:+59140354 None:intergenic
GGGAGTTTCATGGAAGAAGC+TGG 0.532674 7_2:-59140415 Msa1065440:CDS
GATTTGGCTCATTCCACACC+TGG 0.539678 7_2:-59140469 Msa1065440:CDS
CCAATCATGACATTAAAACT+AGG 0.540772 7_2:-59140847 Msa1065440:CDS
CTTCGTCCCTTTGATCCACA+AGG 0.543421 7_2:-59140361 Msa1065440:CDS
ATTCTCTAATAGAGTAGTCT+CGG 0.553680 7_2:-59140755 Msa1065440:CDS
GGAAATGGTGTGGGCCCTGG+TGG 0.555995 7_2:+59140943 None:intergenic
CCAATAATGGGAAATGGTGT+GGG 0.558658 7_2:+59140934 None:intergenic
TCCAATAATGGGAAATGGTG+TGG 0.570892 7_2:+59140933 None:intergenic
TAAATTGAGCCACAAGGAGA+TGG 0.571276 7_2:-59140173 Msa1065440:CDS
GAGAATGCTTGCACTTGCAA+AGG 0.574196 7_2:+59141014 None:intergenic
GTGAATGAGAAAAGCAACAA+AGG 0.614332 7_2:-59140565 Msa1065440:CDS
CACTTCTAAATTGAGCCACA+AGG 0.625300 7_2:-59140179 Msa1065440:CDS
TCACCAAACACTTCTACTAG+TGG 0.631347 7_2:-59141040 Msa1065440:CDS
ATCACACAACTTCTTCATGT+AGG 0.633659 7_2:+59140318 None:intergenic
TGAGAAAAGCAACAAAGGTG+AGG 0.636364 7_2:-59140560 Msa1065440:CDS
ACACAACTTCTTCATGTAGG+TGG 0.649058 7_2:+59140321 None:intergenic
ACAGATGCACCATCTCCTTG+TGG 0.660186 7_2:+59140164 None:intergenic
ATTCTACCAAGCTTCCACCA+GGG 0.726355 7_2:-59140957 Msa1065440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAGTTTAAGAAAATTATT+GGG - chr7_2:59140727-59140746 Msa1065440:CDS 15.0%
!! AAGAGTTTAAGAAAATTATT+GGG - chr7_2:59140727-59140746 Msa1065440:CDS 15.0%
!! TACTCTATTAGAGAATATTT+GGG + chr7_2:59140403-59140422 None:intergenic 20.0%
!! CAAGAGTTTAAGAAAATTAT+TGG - chr7_2:59140726-59140745 Msa1065440:CDS 20.0%
!! CTTAATAGCAACAATATTAT+CGG - chr7_2:59140954-59140973 Msa1065440:CDS 20.0%
!! TACTCTATTAGAGAATATTT+GGG + chr7_2:59140403-59140422 None:intergenic 20.0%
!! CAAGAGTTTAAGAAAATTAT+TGG - chr7_2:59140726-59140745 Msa1065440:CDS 20.0%
!! CTTAATAGCAACAATATTAT+CGG - chr7_2:59140954-59140973 Msa1065440:CDS 20.0%
!! TCTAAGATGTTTCCAATAAT+GGG + chr7_2:59140243-59140262 None:intergenic 25.0%
!!! TTCTAAGATGTTTCCAATAA+TGG + chr7_2:59140244-59140263 None:intergenic 25.0%
!! ATTTTCTTGTAACACTTGTT+TGG + chr7_2:59140379-59140398 None:intergenic 25.0%
! CTACTCTATTAGAGAATATT+TGG + chr7_2:59140404-59140423 None:intergenic 25.0%
! ATCATCACAAATTCTCAATA+GGG - chr7_2:59140448-59140467 Msa1065440:CDS 25.0%
! ACAAAAGTTGCAAGAATTAT+TGG - chr7_2:59140569-59140588 Msa1065440:CDS 25.0%
!! TACTTTGTTCTCTATTGATT+TGG - chr7_2:59140677-59140696 Msa1065440:CDS 25.0%
!!! AAGTTGTGTGATATTTTTGA+TGG - chr7_2:59140855-59140874 Msa1065440:CDS 25.0%
!! TCTAAGATGTTTCCAATAAT+GGG + chr7_2:59140243-59140262 None:intergenic 25.0%
!!! TTCTAAGATGTTTCCAATAA+TGG + chr7_2:59140244-59140263 None:intergenic 25.0%
!! ATTTTCTTGTAACACTTGTT+TGG + chr7_2:59140379-59140398 None:intergenic 25.0%
! CTACTCTATTAGAGAATATT+TGG + chr7_2:59140404-59140423 None:intergenic 25.0%
! ATCATCACAAATTCTCAATA+GGG - chr7_2:59140448-59140467 Msa1065440:CDS 25.0%
! ACAAAAGTTGCAAGAATTAT+TGG - chr7_2:59140569-59140588 Msa1065440:CDS 25.0%
!! TACTTTGTTCTCTATTGATT+TGG - chr7_2:59140677-59140696 Msa1065440:CDS 25.0%
!!! AAGTTGTGTGATATTTTTGA+TGG - chr7_2:59140855-59140874 Msa1065440:CDS 25.0%
! ATGTTTCCAATAATGGGAAA+TGG + chr7_2:59140237-59140256 None:intergenic 30.0%
ATTGGAAACATCTTAGAACT+TGG - chr7_2:59140246-59140265 Msa1065440:CDS 30.0%
ACAAAACTCTCAAAAACCTA+TGG - chr7_2:59140291-59140310 Msa1065440:CDS 30.0%
!!! CCTAGTTTTAATGTCATGAT+TGG + chr7_2:59140318-59140337 None:intergenic 30.0%
CCAATCATGACATTAAAACT+AGG - chr7_2:59140315-59140334 Msa1065440:CDS 30.0%
ATTCTCTAATAGAGTAGTCT+CGG - chr7_2:59140407-59140426 Msa1065440:CDS 30.0%
GATCATCACAAATTCTCAAT+AGG - chr7_2:59140447-59140466 Msa1065440:CDS 30.0%
TTGACTCAACAAAAAACCTT+CGG - chr7_2:59140544-59140563 Msa1065440:CDS 30.0%
! AAAGGTGAGGTTTTTGATAT+TGG - chr7_2:59140615-59140634 Msa1065440:CDS 30.0%
GAAAATTATTGGGAGTTTCA+TGG - chr7_2:59140737-59140756 Msa1065440:CDS 30.0%
! GGAAAGAAATCTGAAACATT+AGG + chr7_2:59140777-59140796 None:intergenic 30.0%
! ATGTTTCCAATAATGGGAAA+TGG + chr7_2:59140237-59140256 None:intergenic 30.0%
ATTGGAAACATCTTAGAACT+TGG - chr7_2:59140246-59140265 Msa1065440:CDS 30.0%
ACAAAACTCTCAAAAACCTA+TGG - chr7_2:59140291-59140310 Msa1065440:CDS 30.0%
!!! CCTAGTTTTAATGTCATGAT+TGG + chr7_2:59140318-59140337 None:intergenic 30.0%
CCAATCATGACATTAAAACT+AGG - chr7_2:59140315-59140334 Msa1065440:CDS 30.0%
ATTCTCTAATAGAGTAGTCT+CGG - chr7_2:59140407-59140426 Msa1065440:CDS 30.0%
GATCATCACAAATTCTCAAT+AGG - chr7_2:59140447-59140466 Msa1065440:CDS 30.0%
TTGACTCAACAAAAAACCTT+CGG - chr7_2:59140544-59140563 Msa1065440:CDS 30.0%
! AAAGGTGAGGTTTTTGATAT+TGG - chr7_2:59140615-59140634 Msa1065440:CDS 30.0%
GAAAATTATTGGGAGTTTCA+TGG - chr7_2:59140737-59140756 Msa1065440:CDS 30.0%
! GGAAAGAAATCTGAAACATT+AGG + chr7_2:59140777-59140796 None:intergenic 30.0%
!! TAACCACTAGTAGAAGTGTT+TGG + chr7_2:59140128-59140147 None:intergenic 35.0%
! TGGAAGCTTGGTAGAATTTT+GGG + chr7_2:59140202-59140221 None:intergenic 35.0%
! TAATGTCATGATTGGTCCAT+AGG + chr7_2:59140310-59140329 None:intergenic 35.0%
! TTGTGGTGATGAGATTACTA+TGG + chr7_2:59140352-59140371 None:intergenic 35.0%
TTCTTCCACAAAGCTAATGT+TGG + chr7_2:59140480-59140499 None:intergenic 35.0%
!! TAGCTTTGTGGAAGAAACTA+AGG - chr7_2:59140484-59140503 Msa1065440:CDS 35.0%
GTGAATGAGAAAAGCAACAA+AGG - chr7_2:59140597-59140616 Msa1065440:CDS 35.0%
! TGAGGTTTTTGATATTGGTG+AGG - chr7_2:59140620-59140639 Msa1065440:CDS 35.0%
ATCACACAACTTCTTCATGT+AGG + chr7_2:59140847-59140866 None:intergenic 35.0%
! ATCTTCCAAAGTCGATTCTA+AGG - chr7_2:59140905-59140924 Msa1065440:CDS 35.0%
!! TAACCACTAGTAGAAGTGTT+TGG + chr7_2:59140128-59140147 None:intergenic 35.0%
! TGGAAGCTTGGTAGAATTTT+GGG + chr7_2:59140202-59140221 None:intergenic 35.0%
! TAATGTCATGATTGGTCCAT+AGG + chr7_2:59140310-59140329 None:intergenic 35.0%
! TTGTGGTGATGAGATTACTA+TGG + chr7_2:59140352-59140371 None:intergenic 35.0%
TTCTTCCACAAAGCTAATGT+TGG + chr7_2:59140480-59140499 None:intergenic 35.0%
!! TAGCTTTGTGGAAGAAACTA+AGG - chr7_2:59140484-59140503 Msa1065440:CDS 35.0%
GTGAATGAGAAAAGCAACAA+AGG - chr7_2:59140597-59140616 Msa1065440:CDS 35.0%
! TGAGGTTTTTGATATTGGTG+AGG - chr7_2:59140620-59140639 Msa1065440:CDS 35.0%
ATCACACAACTTCTTCATGT+AGG + chr7_2:59140847-59140866 None:intergenic 35.0%
! ATCTTCCAAAGTCGATTCTA+AGG - chr7_2:59140905-59140924 Msa1065440:CDS 35.0%
TCACCAAACACTTCTACTAG+TGG - chr7_2:59140122-59140141 Msa1065440:CDS 40.0%
! GTGGAAGCTTGGTAGAATTT+TGG + chr7_2:59140203-59140222 None:intergenic 40.0%
! CCAATAATGGGAAATGGTGT+GGG + chr7_2:59140231-59140250 None:intergenic 40.0%
! TCCAATAATGGGAAATGGTG+TGG + chr7_2:59140232-59140251 None:intergenic 40.0%
! AACACTTGTTTGGCTAGTTG+TGG + chr7_2:59140369-59140388 None:intergenic 40.0%
!! CACTTCCAACATTAGCTTTG+TGG - chr7_2:59140472-59140491 Msa1065440:CDS 40.0%
TGAGAAAAGCAACAAAGGTG+AGG - chr7_2:59140602-59140621 Msa1065440:CDS 40.0%
! AACTCTTGTGACTTTTCACC+AGG + chr7_2:59140714-59140733 None:intergenic 40.0%
ACACAACTTCTTCATGTAGG+TGG + chr7_2:59140844-59140863 None:intergenic 40.0%
! GTACACCTTAGAATCGACTT+TGG + chr7_2:59140913-59140932 None:intergenic 40.0%
CACTTCTAAATTGAGCCACA+AGG - chr7_2:59140983-59141002 Msa1065440:CDS 40.0%
TAAATTGAGCCACAAGGAGA+TGG - chr7_2:59140989-59141008 Msa1065440:CDS 40.0%
TCACCAAACACTTCTACTAG+TGG - chr7_2:59140122-59140141 Msa1065440:CDS 40.0%
! GTGGAAGCTTGGTAGAATTT+TGG + chr7_2:59140203-59140222 None:intergenic 40.0%
! CCAATAATGGGAAATGGTGT+GGG + chr7_2:59140231-59140250 None:intergenic 40.0%
! TCCAATAATGGGAAATGGTG+TGG + chr7_2:59140232-59140251 None:intergenic 40.0%
! AACACTTGTTTGGCTAGTTG+TGG + chr7_2:59140369-59140388 None:intergenic 40.0%
!! CACTTCCAACATTAGCTTTG+TGG - chr7_2:59140472-59140491 Msa1065440:CDS 40.0%
TGAGAAAAGCAACAAAGGTG+AGG - chr7_2:59140602-59140621 Msa1065440:CDS 40.0%
! AACTCTTGTGACTTTTCACC+AGG + chr7_2:59140714-59140733 None:intergenic 40.0%
ACACAACTTCTTCATGTAGG+TGG + chr7_2:59140844-59140863 None:intergenic 40.0%
! GTACACCTTAGAATCGACTT+TGG + chr7_2:59140913-59140932 None:intergenic 40.0%
CACTTCTAAATTGAGCCACA+AGG - chr7_2:59140983-59141002 Msa1065440:CDS 40.0%
TAAATTGAGCCACAAGGAGA+TGG - chr7_2:59140989-59141008 Msa1065440:CDS 40.0%
GAGAATGCTTGCACTTGCAA+AGG + chr7_2:59140151-59140170 None:intergenic 45.0%
AATTCTACCAAGCTTCCACC+AGG - chr7_2:59140204-59140223 Msa1065440:CDS 45.0%
ATTCTACCAAGCTTCCACCA+GGG - chr7_2:59140205-59140224 Msa1065440:CDS 45.0%
CCCACACCATTTCCCATTAT+TGG - chr7_2:59140228-59140247 Msa1065440:CDS 45.0%
ACTTGGCAAAAACCCACACA+AGG - chr7_2:59140263-59140282 Msa1065440:CDS 45.0%
! GTTTTGTGAGTGCCTTGTGT+GGG + chr7_2:59140278-59140297 None:intergenic 45.0%
!! AGTTTTGTGAGTGCCTTGTG+TGG + chr7_2:59140279-59140298 None:intergenic 45.0%
! CTTGCAACTTTTGTTGCCGA+AGG + chr7_2:59140563-59140582 None:intergenic 45.0%
! TTGTGACTTTTCACCAGGTG+TGG + chr7_2:59140709-59140728 None:intergenic 45.0%
GGATCAAAGGGACGAAGAAT+TGG + chr7_2:59140798-59140817 None:intergenic 45.0%
TGCACACCTTGTGGATCAAA+GGG + chr7_2:59140810-59140829 None:intergenic 45.0%
ATGCACACCTTGTGGATCAA+AGG + chr7_2:59140811-59140830 None:intergenic 45.0%
ATCTTTGCATGCACACCTTG+TGG + chr7_2:59140819-59140838 None:intergenic 45.0%
GAGAATGCTTGCACTTGCAA+AGG + chr7_2:59140151-59140170 None:intergenic 45.0%
AATTCTACCAAGCTTCCACC+AGG - chr7_2:59140204-59140223 Msa1065440:CDS 45.0%
ATTCTACCAAGCTTCCACCA+GGG - chr7_2:59140205-59140224 Msa1065440:CDS 45.0%
CCCACACCATTTCCCATTAT+TGG - chr7_2:59140228-59140247 Msa1065440:CDS 45.0%
ACTTGGCAAAAACCCACACA+AGG - chr7_2:59140263-59140282 Msa1065440:CDS 45.0%
! GTTTTGTGAGTGCCTTGTGT+GGG + chr7_2:59140278-59140297 None:intergenic 45.0%
!! AGTTTTGTGAGTGCCTTGTG+TGG + chr7_2:59140279-59140298 None:intergenic 45.0%
! CTTGCAACTTTTGTTGCCGA+AGG + chr7_2:59140563-59140582 None:intergenic 45.0%
! TTGTGACTTTTCACCAGGTG+TGG + chr7_2:59140709-59140728 None:intergenic 45.0%
GGATCAAAGGGACGAAGAAT+TGG + chr7_2:59140798-59140817 None:intergenic 45.0%
TGCACACCTTGTGGATCAAA+GGG + chr7_2:59140810-59140829 None:intergenic 45.0%
ATGCACACCTTGTGGATCAA+AGG + chr7_2:59140811-59140830 None:intergenic 45.0%
ATCTTTGCATGCACACCTTG+TGG + chr7_2:59140819-59140838 None:intergenic 45.0%
! GATTTGGCTCATTCCACACC+TGG - chr7_2:59140693-59140712 Msa1065440:CDS 50.0%
GGGAGTTTCATGGAAGAAGC+TGG - chr7_2:59140747-59140766 Msa1065440:CDS 50.0%
CTTCGTCCCTTTGATCCACA+AGG - chr7_2:59140801-59140820 Msa1065440:CDS 50.0%
ACAGATGCACCATCTCCTTG+TGG + chr7_2:59141001-59141020 None:intergenic 50.0%
GGAGATGGTGCATCTGTTTC+TGG - chr7_2:59141004-59141023 Msa1065440:CDS 50.0%
! GATTTGGCTCATTCCACACC+TGG - chr7_2:59140693-59140712 Msa1065440:CDS 50.0%
GGGAGTTTCATGGAAGAAGC+TGG - chr7_2:59140747-59140766 Msa1065440:CDS 50.0%
CTTCGTCCCTTTGATCCACA+AGG - chr7_2:59140801-59140820 Msa1065440:CDS 50.0%
ACAGATGCACCATCTCCTTG+TGG + chr7_2:59141001-59141020 None:intergenic 50.0%
GGAGATGGTGCATCTGTTTC+TGG - chr7_2:59141004-59141023 Msa1065440:CDS 50.0%
ATGGGAAATGGTGTGGGCCC+TGG + chr7_2:59140225-59140244 None:intergenic 60.0%
ATGGGAAATGGTGTGGGCCC+TGG + chr7_2:59140225-59140244 None:intergenic 60.0%
TGTGGGCCCTGGTGGAAGCT+TGG + chr7_2:59140214-59140233 None:intergenic 65.0%
GGAAATGGTGTGGGCCCTGG+TGG + chr7_2:59140222-59140241 None:intergenic 65.0%
TGTGGGCCCTGGTGGAAGCT+TGG + chr7_2:59140214-59140233 None:intergenic 65.0%
GGAAATGGTGTGGGCCCTGG+TGG + chr7_2:59140222-59140241 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 59140117 59141067 59140117 ID=Msa1065440;Name=Msa1065440
chr7_2 mRNA 59140117 59141067 59140117 ID=Msa1065440-mRNA-1;Parent=Msa1065440;Name=Msa1065440-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|-1|0|1|-1|1|1|0|316
chr7_2 exon 59140117 59141067 59140117 ID=Msa1065440-mRNA-1:exon:11322;Parent=Msa1065440-mRNA-1
chr7_2 CDS 59140117 59141067 59140117 ID=Msa1065440-mRNA-1:cds;Parent=Msa1065440-mRNA-1
Gene Sequence

>Msa1065440

ATGAATCACCAAACACTTCTACTAGTGGTTACCTTTGCAAGTGCAAGCATTCTCATCTTTATTCTTAGAAAAGTTAAACAAACCCAAAATTCTACCAAGCTTCCACCAGGGCCCACACCATTTCCCATTATTGGAAACATCTTAGAACTTGGCAAAAACCCACACAAGGCACTCACAAAACTCTCAAAAACCTATGGACCAATCATGACATTAAAACTAGGAACATTAACAACCATAGTAATCTCATCACCACAACTAGCCAAACAAGTGTTACAAGAAAATTCCCAAATATTCTCTAATAGAGTAGTCTCGGATGCAATTTGTGCACTTGATCATCACAAATTCTCAATAGGGACACTTCCAACATTAGCTTTGTGGAAGAAACTAAGGAAAGTTTGTGCTACACAAGTATTTTCTAAAAAAATGCTTGACTCAACAAAAAACCTTCGGCAACAAAAGTTGCAAGAATTATTGGATTATGTGAATGAGAAAAGCAACAAAGGTGAGGTTTTTGATATTGGTGAGGCTGTTTTTAACACTGTTCTTAATTCAATTTCAAATACTTTGTTCTCTATTGATTTGGCTCATTCCACACCTGGTGAAAAGTCACAAGAGTTTAAGAAAATTATTGGGAGTTTCATGGAAGAAGCTGGTAAGCCTAATGTTTCAGATTTCTTTCCAATTCTTCGTCCCTTTGATCCACAAGGTGTGCATGCAAAGATGACCACCTACATGAAGAAGTTGTGTGATATTTTTGATGGAATTATTGAAGAAAGAATTAGTTCAAGATCTTCCAAAGTCGATTCTAAGGTGTACAATGATGTGTTAGATTCAATTCTTAATAGCAACAATATTATCGGAGAAAACACTTCTAAATTGAGCCACAAGGAGATGGTGCATCTGTTTCTGGTTAGTGTTGCTTTTCAAATAATTAAATTTCATAAACTATAA
Protein sequence

>Msa1065440

MNHQTLLLVVTFASASILIFILRKVKQTQNSTKLPPGPTPFPIIGNILELGKNPHKALTKLSKTYGPIMTLKLGTLTTIVISSPQLAKQVLQENSQIFSNRVVSDAICALDHHKFSIGTLPTLALWKKLRKVCATQVFSKKMLDSTKNLRQQKLQELLDYVNEKSNKGEVFDIGEAVFNTVLNSISNTLFSIDLAHSTPGEKSQEFKKIIGSFMEEAGKPNVSDFFPILRPFDPQGVHAKMTTYMKKLCDIFDGIIEERISSRSSKVDSKVYNDVLDSILNSNNIIGENTSKLSHKEMVHLFLVSVAFQIIKFHKL*