Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066180 | XP_003623840.1 | 97.143 | 560 | 16 | 0 | 35 | 594 | 1 | 560 | 0.0 | 1089 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066180 | sp|O22193|PUB4_ARATH | 26.814 | 317 | 185 | 7 | 190 | 503 | 543 | 815 | 1.16e-15 | 84.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066180 | A2Q5C9 | 97.143 | 560 | 16 | 0 | 35 | 594 | 1 | 560 | 0.0 | 1089 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1066180 | Msa1083410 | 0.828011 | 1.139484e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066180 | MtrunA17_Chr7g0246731 | 97.143 | 560 | 16 | 0 | 35 | 594 | 1 | 560 | 0.0 | 1089 |
| Msa1066180 | MtrunA17_Chr8g0350681 | 77.305 | 564 | 121 | 3 | 35 | 594 | 1 | 561 | 0.0 | 870 |
| Msa1066180 | MtrunA17_Chr3g0131821 | 33.889 | 540 | 327 | 12 | 68 | 593 | 30 | 553 | 4.33e-77 | 254 |
| Msa1066180 | MtrunA17_Chr4g0048401 | 30.237 | 506 | 316 | 11 | 51 | 534 | 22 | 512 | 1.98e-56 | 199 |
| Msa1066180 | MtrunA17_Chr4g0002071 | 33.929 | 168 | 108 | 3 | 426 | 590 | 9 | 176 | 8.14e-20 | 87.4 |
| Msa1066180 | MtrunA17_Chr1g0183781 | 29.675 | 246 | 160 | 8 | 271 | 511 | 480 | 717 | 2.59e-14 | 76.3 |
| Msa1066180 | MtrunA17_Chr7g0248251 | 27.941 | 272 | 188 | 6 | 201 | 467 | 378 | 646 | 2.58e-13 | 72.8 |
| Msa1066180 | MtrunA17_Chr1g0152561 | 23.839 | 323 | 202 | 7 | 190 | 510 | 61 | 341 | 1.13e-12 | 69.7 |
| Msa1066180 | MtrunA17_Chr3g0106931 | 25.879 | 313 | 185 | 6 | 190 | 499 | 553 | 821 | 2.45e-12 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066180 | AT2G45720.1 | 67.818 | 550 | 165 | 3 | 46 | 594 | 15 | 553 | 0.0 | 756 |
| Msa1066180 | AT2G45720.2 | 67.818 | 550 | 165 | 3 | 46 | 594 | 15 | 553 | 0.0 | 756 |
| Msa1066180 | AT2G45720.5 | 67.818 | 550 | 165 | 3 | 46 | 594 | 15 | 553 | 0.0 | 756 |
| Msa1066180 | AT2G45720.3 | 67.818 | 550 | 165 | 3 | 46 | 594 | 15 | 553 | 0.0 | 756 |
| Msa1066180 | AT2G45720.4 | 67.818 | 550 | 165 | 3 | 46 | 594 | 15 | 553 | 0.0 | 756 |
| Msa1066180 | AT1G01830.1 | 64.079 | 554 | 191 | 4 | 42 | 593 | 27 | 574 | 0.0 | 678 |
| Msa1066180 | AT1G01830.3 | 64.079 | 554 | 191 | 4 | 42 | 593 | 27 | 574 | 0.0 | 678 |
| Msa1066180 | AT1G01830.2 | 64.079 | 554 | 191 | 4 | 42 | 593 | 27 | 574 | 0.0 | 678 |
| Msa1066180 | AT5G50900.1 | 36.697 | 545 | 333 | 7 | 56 | 593 | 15 | 554 | 9.02e-102 | 319 |
| Msa1066180 | AT1G61350.1 | 30.978 | 552 | 336 | 17 | 69 | 591 | 32 | 567 | 4.95e-65 | 223 |
| Msa1066180 | AT2G05810.1 | 33.148 | 540 | 337 | 14 | 68 | 591 | 41 | 572 | 2.76e-51 | 186 |
| Msa1066180 | AT2G05810.2 | 33.148 | 540 | 337 | 14 | 68 | 591 | 41 | 572 | 2.76e-51 | 186 |
| Msa1066180 | AT2G23140.1 | 26.814 | 317 | 185 | 7 | 190 | 503 | 546 | 818 | 1.09e-16 | 84.3 |
| Msa1066180 | AT2G23140.1 | 26.400 | 250 | 143 | 4 | 276 | 525 | 591 | 799 | 8.40e-11 | 65.5 |
| Msa1066180 | AT2G23140.2 | 26.814 | 317 | 185 | 7 | 190 | 503 | 543 | 815 | 1.18e-16 | 84.3 |
| Msa1066180 | AT2G23140.2 | 26.400 | 250 | 143 | 4 | 276 | 525 | 588 | 796 | 8.68e-11 | 65.5 |
| Msa1066180 | AT2G23140.4 | 26.814 | 317 | 185 | 7 | 190 | 503 | 543 | 815 | 1.18e-16 | 84.3 |
| Msa1066180 | AT2G23140.4 | 26.400 | 250 | 143 | 4 | 276 | 525 | 588 | 796 | 8.68e-11 | 65.5 |
| Msa1066180 | AT2G23140.3 | 26.814 | 317 | 185 | 7 | 190 | 503 | 354 | 626 | 1.99e-16 | 83.2 |
| Msa1066180 | AT2G23140.5 | 26.814 | 317 | 185 | 7 | 190 | 503 | 354 | 626 | 1.99e-16 | 83.2 |
| Msa1066180 | AT3G54790.2 | 30.466 | 279 | 175 | 9 | 240 | 513 | 454 | 718 | 9.68e-16 | 81.3 |
| Msa1066180 | AT3G54790.3 | 30.466 | 279 | 175 | 9 | 240 | 513 | 490 | 754 | 1.42e-15 | 80.9 |
| Msa1066180 | AT3G54790.1 | 30.466 | 279 | 175 | 9 | 240 | 513 | 490 | 754 | 1.42e-15 | 80.9 |
| Msa1066180 | AT3G46510.1 | 26.990 | 289 | 199 | 5 | 188 | 469 | 352 | 635 | 1.73e-12 | 70.9 |
| Msa1066180 | AT5G67340.1 | 29.741 | 232 | 155 | 7 | 273 | 499 | 465 | 693 | 4.42e-12 | 69.7 |
| Msa1066180 | AT5G67340.2 | 29.741 | 232 | 155 | 7 | 273 | 499 | 465 | 693 | 4.42e-12 | 69.7 |
| Msa1066180 | AT2G28830.1 | 26.962 | 293 | 198 | 7 | 187 | 469 | 282 | 568 | 7.61e-12 | 68.6 |
| Msa1066180 | AT5G58680.1 | 24.731 | 279 | 170 | 2 | 267 | 545 | 99 | 337 | 6.07e-11 | 64.7 |
Find 106 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTGTTACTGGTTCTTTA+AGG | 0.161140 | 7_2:-60140722 | Msa1066180:intron |
| TGATAAAAGTGTGCCTAATT+TGG | 0.258642 | 7_2:-60138208 | Msa1066180:CDS |
| GATAAAGCAAAAGAGGTTAA+AGG | 0.269357 | 7_2:-60139566 | Msa1066180:CDS |
| ACATTCTGCAGCATATTCTT+TGG | 0.269965 | 7_2:+60138644 | None:intergenic |
| TCAAGTAACTGAACCAAATT+AGG | 0.283449 | 7_2:+60138195 | None:intergenic |
| TCCTGAGGTGAGACAAGTTT+TGG | 0.294920 | 7_2:-60138727 | Msa1066180:CDS |
| GGATGCATTAATCGGGAAAA+TGG | 0.303126 | 7_2:-60139333 | Msa1066180:CDS |
| GACACAGAAGACGCATTTAA+AGG | 0.315805 | 7_2:+60139248 | None:intergenic |
| GATAAGTTTGATAACATTGA+TGG | 0.317226 | 7_2:+60139497 | None:intergenic |
| ATGATCTCATATGGTGCTAT+TGG | 0.322689 | 7_2:-60138090 | Msa1066180:CDS |
| CTTCCACCATGATCTTGATT+TGG | 0.323670 | 7_2:+60139663 | None:intergenic |
| TTAACTTGTGGAATGTTGTT+AGG | 0.328884 | 7_2:-60138669 | Msa1066180:CDS |
| TTTGCTTTATCAAGAGCAAT+AGG | 0.341641 | 7_2:+60139578 | None:intergenic |
| CTTATAAGACTTGTTGAATC+AGG | 0.347476 | 7_2:-60138927 | Msa1066180:CDS |
| GGTCGCAGCGTTAAGGAATT+TGG | 0.349065 | 7_2:-60138511 | Msa1066180:CDS |
| GGGAAATTAAGAAGTTTGTT+TGG | 0.358691 | 7_2:-60138000 | Msa1066180:CDS |
| ATAAAGCAAAAGAGGTTAAA+GGG | 0.368258 | 7_2:-60139565 | Msa1066180:CDS |
| GTTAGGATTACTTCCTCGTT+TGG | 0.373107 | 7_2:-60138457 | Msa1066180:CDS |
| TCTTTGCAAGGAGCAATTGC+AGG | 0.375446 | 7_2:-60139447 | Msa1066180:CDS |
| TTGGTTCACGTGTTGAAATC+CGG | 0.379042 | 7_2:-60138438 | Msa1066180:CDS |
| TTAAATGCGTCTTCTGTGTC+AGG | 0.380342 | 7_2:-60139245 | Msa1066180:CDS |
| AGAAGATGAAAAGAATGTTT+TGG | 0.395867 | 7_2:-60139102 | Msa1066180:CDS |
| GCTTTGTTGAAGTCGCTTGA+AGG | 0.399525 | 7_2:-60139425 | Msa1066180:CDS |
| AGTGATCTGGATGCATTAAT+CGG | 0.402558 | 7_2:-60139341 | Msa1066180:CDS |
| AAATATGCAGTTACATGCCT+TGG | 0.403305 | 7_2:-60138147 | Msa1066180:CDS |
| AATCTGCGGTCGCAGCGTTA+AGG | 0.404037 | 7_2:-60138518 | Msa1066180:CDS |
| TGCTCTTGATAAAGCAAAAG+AGG | 0.413222 | 7_2:-60139573 | Msa1066180:CDS |
| GTCGGTTTCTGAGACAGCTT+TGG | 0.419694 | 7_2:-60138484 | Msa1066180:CDS |
| TTGGTTGAGCTTTGTAGAAC+CGG | 0.423226 | 7_2:-60138804 | Msa1066180:CDS |
| TATATGCTTGCTAGCCGAAT+CGG | 0.430762 | 7_2:-60138994 | Msa1066180:CDS |
| ACTTCAGATGCAGAGTGATC+TGG | 0.435997 | 7_2:-60139354 | Msa1066180:CDS |
| ATATACTTTCAACAGAAGAT+TGG | 0.437674 | 7_2:-60139625 | Msa1066180:CDS |
| TTGTATCGGAAGGCGGTGTC+AGG | 0.440530 | 7_2:-60138578 | Msa1066180:CDS |
| TACATGAGAGATTGGAAAGA+GGG | 0.441315 | 7_2:-60138020 | Msa1066180:CDS |
| CAGTAGCCCACAACAACATA+AGG | 0.443924 | 7_2:-60139202 | Msa1066180:CDS |
| CAGGAGCAATATTGCTGCAC+TGG | 0.450068 | 7_2:-60139069 | Msa1066180:CDS |
| AGAAGCGAAGCACAAAGCTT+TGG | 0.451007 | 7_2:-60139147 | Msa1066180:CDS |
| GAGACAGCTTTGGTTTCGTT+AGG | 0.458654 | 7_2:-60138474 | Msa1066180:CDS |
| GTAACTCCCTTATGTTGTTG+TGG | 0.467574 | 7_2:+60139195 | None:intergenic |
| TAACTCCCTTATGTTGTTGT+GGG | 0.470411 | 7_2:+60139196 | None:intergenic |
| CGTGTTGAAATCCGGCTCCC+CGG | 0.480276 | 7_2:-60138430 | Msa1066180:CDS |
| CTCAAAGAATGCTCTTTGCA+AGG | 0.480769 | 7_2:-60139459 | Msa1066180:CDS |
| CTTTGTTGAAGTCGCTTGAA+GGG | 0.481298 | 7_2:-60139424 | Msa1066180:CDS |
| ATATGCTTGCTAGCCGAATC+GGG | 0.486262 | 7_2:-60138993 | Msa1066180:CDS |
| AACAAGGATAAGAGAGAAAA+CGG | 0.487702 | 7_2:-60139024 | Msa1066180:CDS |
| ATGATCAATTTATTAACTTG+TGG | 0.487944 | 7_2:-60138681 | Msa1066180:CDS |
| AAGAAGCTAATGATCTCATA+TGG | 0.492681 | 7_2:-60138099 | Msa1066180:CDS |
| GTGTTGAAATCCGGCTCCCC+GGG | 0.500991 | 7_2:-60138429 | Msa1066180:CDS |
| ATCCTCGCAGCTACCCGATT+CGG | 0.503854 | 7_2:+60138980 | None:intergenic |
| TTTGAAGAAACTTACTGAGA+TGG | 0.503997 | 7_2:-60138064 | Msa1066180:CDS |
| CAGCGTTAAGGAATTTGGTC+GGG | 0.505226 | 7_2:-60138506 | Msa1066180:CDS |
| GATTTGAATTTACGAGATTG+TGG | 0.508625 | 7_2:-60139311 | Msa1066180:CDS |
| ACCGCAGATTCTTGAGGAAG+TGG | 0.509135 | 7_2:+60138531 | None:intergenic |
| ACATGGTGGTGTTTGTCCGT+TGG | 0.509909 | 7_2:-60138823 | Msa1066180:CDS |
| AACCGGTGATTCTGTTTCGC+AGG | 0.510018 | 7_2:-60138787 | Msa1066180:CDS |
| AACAAGGAGAGGAATGCAAC+CGG | 0.520728 | 7_2:+60138332 | None:intergenic |
| CTTCTAAGTGACCGATCTGA+AGG | 0.523905 | 7_2:+60139165 | None:intergenic |
| GATTCAACAAGTCTTATAAG+AGG | 0.524542 | 7_2:+60138930 | None:intergenic |
| AATCGGGTAGCTGCGAGGAT+TGG | 0.524824 | 7_2:-60138977 | Msa1066180:CDS |
| AGAGCATTCTTTGAGAAACA+TGG | 0.525223 | 7_2:+60139467 | None:intergenic |
| TAATAGAAGAGAAGTTAAGA+AGG | 0.531726 | 7_2:-60138232 | Msa1066180:CDS |
| ATCAAGATCATGGTGGAAGA+TGG | 0.531828 | 7_2:-60139659 | Msa1066180:CDS |
| AGCTTTGGACAGTGTTGTTG+AGG | 0.533166 | 7_2:-60139132 | Msa1066180:CDS |
| TTACATGAGAGATTGGAAAG+AGG | 0.535319 | 7_2:-60138021 | Msa1066180:CDS |
| TTGATCAAAACTGGTATGCT+CGG | 0.538282 | 7_2:-60139284 | Msa1066180:CDS |
| GTTACAAAGGTTATCAATGT+CGG | 0.540691 | 7_2:-60138871 | Msa1066180:CDS |
| GTGATCTGGATGCATTAATC+GGG | 0.542255 | 7_2:-60139340 | Msa1066180:CDS |
| AGATTGGTTGTTACATGCAA+AGG | 0.544625 | 7_2:-60139609 | Msa1066180:CDS |
| AAGTGCTGTAGGTAAAGAAA+AGG | 0.551122 | 7_2:-60138904 | Msa1066180:CDS |
| GCCAAAACTTGTCTCACCTC+AGG | 0.556043 | 7_2:+60138726 | None:intergenic |
| GCAGCGTTAAGGAATTTGGT+CGG | 0.556434 | 7_2:-60138507 | Msa1066180:CDS |
| TCTCCTTGTTAAGATGCTTG+AGG | 0.557290 | 7_2:-60138319 | Msa1066180:CDS |
| TTTCTGTCGAGCTGCTAACT+CGG | 0.563543 | 7_2:+60138376 | None:intergenic |
| GTTGAATCAGGAAGTGCTGT+AGG | 0.569401 | 7_2:-60138915 | Msa1066180:CDS |
| GTTAAGGAATTTGGTCGGGT+CGG | 0.573286 | 7_2:-60138502 | Msa1066180:CDS |
| GAGGATTGGCTAGTTTCTGA+AGG | 0.584950 | 7_2:-60138963 | Msa1066180:CDS |
| AACTTGTCTCACCTCAGGAA+CGG | 0.585582 | 7_2:+60138731 | None:intergenic |
| GCTGCGACCGCAGATTCTTG+AGG | 0.588276 | 7_2:+60138525 | None:intergenic |
| AGCCTGCGAAACAGAATCAC+CGG | 0.588909 | 7_2:+60138785 | None:intergenic |
| AGTAGCCCACAACAACATAA+GGG | 0.590757 | 7_2:-60139201 | Msa1066180:CDS |
| CATTCTTTGAGAAACATGGA+TGG | 0.592010 | 7_2:+60139471 | None:intergenic |
| TCAACAAGTCTTATAAGAGG+TGG | 0.596638 | 7_2:+60138933 | None:intergenic |
| TGGCTCAAGAAGGGATTGTG+AGG | 0.596839 | 7_2:-60138707 | Msa1066180:CDS |
| GAAACATCGCGTGAAATCGT+AGG | 0.597546 | 7_2:-60138846 | Msa1066180:CDS |
| TTTGTTGAAGTCGCTTGAAG+GGG | 0.599961 | 7_2:-60139423 | Msa1066180:CDS |
| GAATATTTCAGCCGTTCCTG+AGG | 0.601450 | 7_2:-60138742 | Msa1066180:CDS |
| TCAAGCATCTTAACAAGGAG+AGG | 0.608112 | 7_2:+60138321 | None:intergenic |
| AGTCTCTTAGCATATCTTGA+CGG | 0.608560 | 7_2:-60138555 | Msa1066180:CDS |
| AGGCTGCAATATCGTTACAA+AGG | 0.609712 | 7_2:-60138884 | Msa1066180:CDS |
| GGCTCAAGAAGGGATTGTGA+GGG | 0.611614 | 7_2:-60138706 | Msa1066180:CDS |
| TTACTTGCACGCCTTCAGAT+CGG | 0.623992 | 7_2:-60139176 | Msa1066180:CDS |
| TGCTTACAGCAACATTAACA+AGG | 0.625372 | 7_2:-60139040 | Msa1066180:CDS |
| CGTGAAATCGTAGGACATGG+TGG | 0.626400 | 7_2:-60138837 | Msa1066180:CDS |
| TCGGCAGATTGCTGACGCAG+CGG | 0.628367 | 7_2:+60138395 | None:intergenic |
| TTCAACACGTGAACCAAACG+AGG | 0.632931 | 7_2:+60138444 | None:intergenic |
| TACTTGAAGAAATCAATCCA+AGG | 0.635931 | 7_2:+60138130 | None:intergenic |
| TAGCCTCAAGCATCTTAACA+AGG | 0.636140 | 7_2:+60138316 | None:intergenic |
| TGTGTGAAGGAGAAGTATGA+AGG | 0.638552 | 7_2:-60139380 | Msa1066180:CDS |
| AAAAGTGTTGTATCGGAAGG+CGG | 0.639832 | 7_2:-60138585 | Msa1066180:CDS |
| TCCACTTCCTCAAGAATCTG+CGG | 0.640983 | 7_2:-60138532 | Msa1066180:CDS |
| ATCAGCTGAATTGTGTGTGA+AGG | 0.643275 | 7_2:-60139393 | Msa1066180:CDS |
| TCGCGTGAAATCGTAGGACA+TGG | 0.645677 | 7_2:-60138840 | Msa1066180:CDS |
| CTTACTGAGATGGATACTCC+AGG | 0.657141 | 7_2:-60138054 | Msa1066180:CDS |
| GTTCTACAAAGCTCAACCAA+CGG | 0.683139 | 7_2:+60138807 | None:intergenic |
| CAAAACTGGTATGCTCGGCG+AGG | 0.690708 | 7_2:-60139279 | Msa1066180:CDS |
| TTACCAAATCAAGATCATGG+TGG | 0.739992 | 7_2:-60139666 | Msa1066180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTATGATTATAATTTTTT+TGG | - | chr7_2:60138660-60138679 | Msa1066180:CDS | 10.0% |
| !!! | TGTATGATTATAATTTTTTT+GGG | - | chr7_2:60138661-60138680 | Msa1066180:CDS | 10.0% |
| !! | AATAATTTCCCTAAAAAAAA+AGG | + | chr7_2:60138606-60138625 | None:intergenic | 15.0% |
| !!! | TTGACATAAGAAATTTTAAA+AGG | + | chr7_2:60138929-60138948 | None:intergenic | 15.0% |
| !! | TAACAATAACAAAAGAGAAA+AGG | + | chr7_2:60138042-60138061 | None:intergenic | 20.0% |
| !!! | TGTAATTTTTGTCTTTAGTA+TGG | - | chr7_2:60138125-60138144 | Msa1066180:CDS | 20.0% |
| !!! | TTTAGTATGGTTAGATTTTA+TGG | - | chr7_2:60138138-60138157 | Msa1066180:CDS | 20.0% |
| !!! | TTAGTATGGTTAGATTTTAT+GGG | - | chr7_2:60138139-60138158 | Msa1066180:CDS | 20.0% |
| !!! | GTAATTTTGTATTCTTTCTT+GGG | + | chr7_2:60138527-60138546 | None:intergenic | 20.0% |
| !! | TTTAAGTACAAATGTACTAT+TGG | + | chr7_2:60138549-60138568 | None:intergenic | 20.0% |
| !! | ATAGTACATTTGTACTTAAA+AGG | - | chr7_2:60138549-60138568 | Msa1066180:CDS | 20.0% |
| !! | TAGTACATTTGTACTTAAAA+GGG | - | chr7_2:60138550-60138569 | Msa1066180:CDS | 20.0% |
| !!! | AAAAAAAGGAGAAGATATTT+TGG | + | chr7_2:60138592-60138611 | None:intergenic | 20.0% |
| !!! | ATATCTTCTCCTTTTTTTTT+AGG | - | chr7_2:60138594-60138613 | Msa1066180:CDS | 20.0% |
| !!! | TATCTTCTCCTTTTTTTTTA+GGG | - | chr7_2:60138595-60138614 | Msa1066180:CDS | 20.0% |
| !! | TACAATATAACCATATATCA+TGG | + | chr7_2:60138645-60138664 | None:intergenic | 20.0% |
| !!! | TAAGAAATTTTAAAAGGTTG+TGG | + | chr7_2:60138923-60138942 | None:intergenic | 20.0% |
| !!! | ATGATCAATTTATTAACTTG+TGG | - | chr7_2:60140041-60140060 | Msa1066180:intron | 20.0% |
| !!! | TCTAAAAAAAAGTGTTGTAT+CGG | - | chr7_2:60140130-60140149 | Msa1066180:intron | 20.0% |
| !! | ACAGAAATGAAAAAATTGAT+CGG | - | chr7_2:60140362-60140381 | Msa1066180:intron | 20.0% |
| !!! | TATTTTTTTGCATTGTTTTG+AGG | + | chr7_2:60140560-60140579 | None:intergenic | 20.0% |
| ! | TACAGTAACATATGATATGA+TGG | - | chr7_2:60138194-60138213 | Msa1066180:CDS | 25.0% |
| !! | TGACAAGTCAATTTGATTTA+AGG | - | chr7_2:60138237-60138256 | Msa1066180:CDS | 25.0% |
| ! | ATTCATCACCACAAAAAAAA+AGG | + | chr7_2:60138291-60138310 | None:intergenic | 25.0% |
| !!! | AATCTCTAACTTTACTTTTG+AGG | + | chr7_2:60138480-60138499 | None:intergenic | 25.0% |
| ! | TATTCTTTCTTGGGATAAAT+TGG | + | chr7_2:60138518-60138537 | None:intergenic | 25.0% |
| !! | GGTAATTTTGTATTCTTTCT+TGG | + | chr7_2:60138528-60138547 | None:intergenic | 25.0% |
| !! | AGAAGATTCTAGAAATTTGT+TGG | - | chr7_2:60138812-60138831 | Msa1066180:CDS | 25.0% |
| ! | ATATACTTTCAACAGAAGAT+TGG | - | chr7_2:60139097-60139116 | Msa1066180:CDS | 25.0% |
| ! | ATAAAGCAAAAGAGGTTAAA+GGG | - | chr7_2:60139157-60139176 | Msa1066180:CDS | 25.0% |
| !! | GATAAGTTTGATAACATTGA+TGG | + | chr7_2:60139228-60139247 | None:intergenic | 25.0% |
| !! | AGAAGATGAAAAGAATGTTT+TGG | - | chr7_2:60139620-60139639 | Msa1066180:CDS | 25.0% |
| ! | TAATAGAAGAGAAGTTAAGA+AGG | - | chr7_2:60140490-60140509 | Msa1066180:intron | 25.0% |
| ! | TAAAAAGTTACATGAGAGAT+TGG | - | chr7_2:60140694-60140713 | Msa1066180:intron | 25.0% |
| !! | TTTCTGTTACTGGTTCTTTA+AGG | - | chr7_2:60138000-60138019 | Msa1066180:CDS | 30.0% |
| !!! | TCTTCCTTCCTTTTTTTTTG+TGG | - | chr7_2:60138280-60138299 | Msa1066180:CDS | 30.0% |
| ATCACCACAAAAAAAAAGGA+AGG | + | chr7_2:60138287-60138306 | None:intergenic | 30.0% | |
| ATGTACACAATATACAACTG+TGG | - | chr7_2:60138325-60138344 | Msa1066180:CDS | 30.0% | |
| !! | TCTAACTTTACTTTTGAGGA+TGG | + | chr7_2:60138476-60138495 | None:intergenic | 30.0% |
| !! | TGTACTTAAAAGGGTACTTT+AGG | - | chr7_2:60138559-60138578 | Msa1066180:CDS | 30.0% |
| TTTGTAATGGCCATGATATA+TGG | - | chr7_2:60138632-60138651 | Msa1066180:CDS | 30.0% | |
| AAAGTAAGAGAAAAGACTAG+TGG | - | chr7_2:60138703-60138722 | Msa1066180:CDS | 30.0% | |
| AAGTAAGAGAAAAGACTAGT+GGG | - | chr7_2:60138704-60138723 | Msa1066180:CDS | 30.0% | |
| ATTAGGTACTTCAGATTTGT+TGG | - | chr7_2:60138732-60138751 | Msa1066180:CDS | 30.0% | |
| TGTTTACTTAAACCATGACT+TGG | + | chr7_2:60138758-60138777 | None:intergenic | 30.0% | |
| GTGAAGCACAAAAAAACAAA+TGG | + | chr7_2:60138839-60138858 | None:intergenic | 30.0% | |
| ! | GTGCTTCACAATTTTTCTAT+TGG | - | chr7_2:60138850-60138869 | Msa1066180:CDS | 30.0% |
| CTATTTGCAAATTGACATCT+TGG | - | chr7_2:60138964-60138983 | Msa1066180:CDS | 30.0% | |
| ATCTTGGATCATTTCTTTGA+AGG | - | chr7_2:60138980-60138999 | Msa1066180:CDS | 30.0% | |
| ! | TTTTTGTGTCAGTTTCTTTG+TGG | - | chr7_2:60139015-60139034 | Msa1066180:CDS | 30.0% |
| ! | CTTTTACCAAATCAAGATCA+TGG | - | chr7_2:60139053-60139072 | Msa1066180:CDS | 30.0% |
| TTTGCTTTATCAAGAGCAAT+AGG | + | chr7_2:60139147-60139166 | None:intergenic | 30.0% | |
| GATAAAGCAAAAGAGGTTAA+AGG | - | chr7_2:60139156-60139175 | Msa1066180:CDS | 30.0% | |
| ! | TTAAAGGGTTTTCTACTAGA+TGG | - | chr7_2:60139172-60139191 | Msa1066180:CDS | 30.0% |
| GATTTGAATTTACGAGATTG+TGG | - | chr7_2:60139411-60139430 | Msa1066180:CDS | 30.0% | |
| AACAAGGATAAGAGAGAAAA+CGG | - | chr7_2:60139698-60139717 | Msa1066180:CDS | 30.0% | |
| ! | GATTCAACAAGTCTTATAAG+AGG | + | chr7_2:60139795-60139814 | None:intergenic | 30.0% |
| !! | CTTATAAGACTTGTTGAATC+AGG | - | chr7_2:60139795-60139814 | Msa1066180:intron | 30.0% |
| GTTACAAAGGTTATCAATGT+CGG | - | chr7_2:60139851-60139870 | Msa1066180:intron | 30.0% | |
| !! | TTAACTTGTGGAATGTTGTT+AGG | - | chr7_2:60140053-60140072 | Msa1066180:intron | 30.0% |
| !! | AAAAAAAGTGTTGTATCGGA+AGG | - | chr7_2:60140134-60140153 | Msa1066180:intron | 30.0% |
| ! | TGATAAAAGTGTGCCTAATT+TGG | - | chr7_2:60140514-60140533 | Msa1066180:intron | 30.0% |
| TCAAGTAACTGAACCAAATT+AGG | + | chr7_2:60140530-60140549 | None:intergenic | 30.0% | |
| TACTTGAAGAAATCAATCCA+AGG | + | chr7_2:60140595-60140614 | None:intergenic | 30.0% | |
| AAGAAGCTAATGATCTCATA+TGG | - | chr7_2:60140623-60140642 | Msa1066180:intron | 30.0% | |
| TTTGAAGAAACTTACTGAGA+TGG | - | chr7_2:60140658-60140677 | Msa1066180:intron | 30.0% | |
| ! | GGGAAATTAAGAAGTTTGTT+TGG | - | chr7_2:60140722-60140741 | Msa1066180:intron | 30.0% |
| !! | TGTTACTGGTTCTTTAAGGT+TGG | - | chr7_2:60138004-60138023 | Msa1066180:CDS | 35.0% |
| GACTTGTGTCTTTCTTTAGA+AGG | - | chr7_2:60138353-60138372 | Msa1066180:CDS | 35.0% | |
| CTTAACTATGAGAAAGGGAA+AGG | + | chr7_2:60138383-60138402 | None:intergenic | 35.0% | |
| TTCCCTTTCTCATAGTTAAG+AGG | - | chr7_2:60138383-60138402 | Msa1066180:CDS | 35.0% | |
| CTCCTCTTAACTATGAGAAA+GGG | + | chr7_2:60138388-60138407 | None:intergenic | 35.0% | |
| TCTCCTCTTAACTATGAGAA+AGG | + | chr7_2:60138389-60138408 | None:intergenic | 35.0% | |
| TTACCAAATCAAGATCATGG+TGG | - | chr7_2:60139056-60139075 | Msa1066180:CDS | 35.0% | |
| ! | AGATTGGTTGTTACATGCAA+AGG | - | chr7_2:60139113-60139132 | Msa1066180:CDS | 35.0% |
| TGCTCTTGATAAAGCAAAAG+AGG | - | chr7_2:60139149-60139168 | Msa1066180:CDS | 35.0% | |
| ! | CATTCTTTGAGAAACATGGA+TGG | + | chr7_2:60139254-60139273 | None:intergenic | 35.0% |
| ! | AGAGCATTCTTTGAGAAACA+TGG | + | chr7_2:60139258-60139277 | None:intergenic | 35.0% |
| AGTGATCTGGATGCATTAAT+CGG | - | chr7_2:60139381-60139400 | Msa1066180:CDS | 35.0% | |
| ! | TGTGGACTTTTGATCAAAAC+TGG | - | chr7_2:60139429-60139448 | Msa1066180:CDS | 35.0% |
| TTGATCAAAACTGGTATGCT+CGG | - | chr7_2:60139438-60139457 | Msa1066180:CDS | 35.0% | |
| TAACTCCCTTATGTTGTTGT+GGG | + | chr7_2:60139529-60139548 | None:intergenic | 35.0% | |
| !!! | ATGTTTTGGCTGTTTTTAGC+AGG | - | chr7_2:60139634-60139653 | Msa1066180:CDS | 35.0% |
| TGCTTACAGCAACATTAACA+AGG | - | chr7_2:60139682-60139701 | Msa1066180:CDS | 35.0% | |
| ! | TCAACAAGTCTTATAAGAGG+TGG | + | chr7_2:60139792-60139811 | None:intergenic | 35.0% |
| ! | AAGTGCTGTAGGTAAAGAAA+AGG | - | chr7_2:60139818-60139837 | Msa1066180:intron | 35.0% |
| ACATTCTGCAGCATATTCTT+TGG | + | chr7_2:60140081-60140100 | None:intergenic | 35.0% | |
| AGTCTCTTAGCATATCTTGA+CGG | - | chr7_2:60140167-60140186 | Msa1066180:intron | 35.0% | |
| !!! | TTTGCATTGTTTTGAGGACT+AGG | + | chr7_2:60140554-60140573 | None:intergenic | 35.0% |
| AAATATGCAGTTACATGCCT+TGG | - | chr7_2:60140575-60140594 | Msa1066180:intron | 35.0% | |
| !! | ATGATCTCATATGGTGCTAT+TGG | - | chr7_2:60140632-60140651 | Msa1066180:intron | 35.0% |
| !! | TCATGTAACTTTTTAGCACC+TGG | + | chr7_2:60140689-60140708 | None:intergenic | 35.0% |
| TTACATGAGAGATTGGAAAG+AGG | - | chr7_2:60140701-60140720 | Msa1066180:intron | 35.0% | |
| TACATGAGAGATTGGAAAGA+GGG | - | chr7_2:60140702-60140721 | Msa1066180:intron | 35.0% | |
| !! | ACTGGTTCTTTAAGGTTGGT+TGG | - | chr7_2:60138008-60138027 | Msa1066180:CDS | 40.0% |
| AAGACTAGTGGGACATGATT+AGG | - | chr7_2:60138715-60138734 | Msa1066180:CDS | 40.0% | |
| CTTCCACCATGATCTTGATT+TGG | + | chr7_2:60139062-60139081 | None:intergenic | 40.0% | |
| ! | ATCAAGATCATGGTGGAAGA+TGG | - | chr7_2:60139063-60139082 | Msa1066180:CDS | 40.0% |
| CTCAAAGAATGCTCTTTGCA+AGG | - | chr7_2:60139263-60139282 | Msa1066180:CDS | 40.0% | |
| CTTTGTTGAAGTCGCTTGAA+GGG | - | chr7_2:60139298-60139317 | Msa1066180:CDS | 40.0% | |
| TTTGTTGAAGTCGCTTGAAG+GGG | - | chr7_2:60139299-60139318 | Msa1066180:CDS | 40.0% | |
| ATCAGCTGAATTGTGTGTGA+AGG | - | chr7_2:60139329-60139348 | Msa1066180:CDS | 40.0% | |
| ! | TGTGTGAAGGAGAAGTATGA+AGG | - | chr7_2:60139342-60139361 | Msa1066180:CDS | 40.0% |
| GTGATCTGGATGCATTAATC+GGG | - | chr7_2:60139382-60139401 | Msa1066180:CDS | 40.0% | |
| GGATGCATTAATCGGGAAAA+TGG | - | chr7_2:60139389-60139408 | Msa1066180:CDS | 40.0% | |
| GACACAGAAGACGCATTTAA+AGG | + | chr7_2:60139477-60139496 | None:intergenic | 40.0% | |
| TTAAATGCGTCTTCTGTGTC+AGG | - | chr7_2:60139477-60139496 | Msa1066180:CDS | 40.0% | |
| AGTAGCCCACAACAACATAA+GGG | - | chr7_2:60139521-60139540 | Msa1066180:CDS | 40.0% | |
| GTAACTCCCTTATGTTGTTG+TGG | + | chr7_2:60139530-60139549 | None:intergenic | 40.0% | |
| ! | TATATGCTTGCTAGCCGAAT+CGG | - | chr7_2:60139728-60139747 | Msa1066180:intron | 40.0% |
| AGGCTGCAATATCGTTACAA+AGG | - | chr7_2:60139838-60139857 | Msa1066180:intron | 40.0% | |
| GTTCTACAAAGCTCAACCAA+CGG | + | chr7_2:60139918-60139937 | None:intergenic | 40.0% | |
| ! | TTGGTTGAGCTTTGTAGAAC+CGG | - | chr7_2:60139918-60139937 | Msa1066180:intron | 40.0% |
| !!! | AGACAAGTTTTGGCTCAAGA+AGG | - | chr7_2:60140005-60140024 | Msa1066180:intron | 40.0% |
| !!! | GACAAGTTTTGGCTCAAGAA+GGG | - | chr7_2:60140006-60140025 | Msa1066180:intron | 40.0% |
| !! | AAAAGTGTTGTATCGGAAGG+CGG | - | chr7_2:60140137-60140156 | Msa1066180:intron | 40.0% |
| GTTAGGATTACTTCCTCGTT+TGG | - | chr7_2:60140265-60140284 | Msa1066180:intron | 40.0% | |
| TTGGTTCACGTGTTGAAATC+CGG | - | chr7_2:60140284-60140303 | Msa1066180:intron | 40.0% | |
| AAAAAATTGATCGGCGAAGC+CGG | - | chr7_2:60140371-60140390 | Msa1066180:intron | 40.0% | |
| TCAAGCATCTTAACAAGGAG+AGG | + | chr7_2:60140404-60140423 | None:intergenic | 40.0% | |
| TCTCCTTGTTAAGATGCTTG+AGG | - | chr7_2:60140403-60140422 | Msa1066180:intron | 40.0% | |
| TAGCCTCAAGCATCTTAACA+AGG | + | chr7_2:60140409-60140428 | None:intergenic | 40.0% | |
| !!! | CTGGGTTGCTTTTCTGTTAC+TGG | - | chr7_2:60137990-60138009 | Msa1066180:CDS | 45.0% |
| !! | CAGATTTGTTGGCCAAGTCA+TGG | - | chr7_2:60138743-60138762 | Msa1066180:CDS | 45.0% |
| TCTTTGCAAGGAGCAATTGC+AGG | - | chr7_2:60139275-60139294 | Msa1066180:CDS | 45.0% | |
| ! | GCTTTGTTGAAGTCGCTTGA+AGG | - | chr7_2:60139297-60139316 | Msa1066180:CDS | 45.0% |
| ACTTCAGATGCAGAGTGATC+TGG | - | chr7_2:60139368-60139387 | Msa1066180:CDS | 45.0% | |
| CAGTAGCCCACAACAACATA+AGG | - | chr7_2:60139520-60139539 | Msa1066180:CDS | 45.0% | |
| TTACTTGCACGCCTTCAGAT+CGG | - | chr7_2:60139546-60139565 | Msa1066180:CDS | 45.0% | |
| CTTCTAAGTGACCGATCTGA+AGG | + | chr7_2:60139560-60139579 | None:intergenic | 45.0% | |
| AGAAGCGAAGCACAAAGCTT+TGG | - | chr7_2:60139575-60139594 | Msa1066180:CDS | 45.0% | |
| !! | AGCTTTGGACAGTGTTGTTG+AGG | - | chr7_2:60139590-60139609 | Msa1066180:CDS | 45.0% |
| ! | ATATGCTTGCTAGCCGAATC+GGG | - | chr7_2:60139729-60139748 | Msa1066180:intron | 45.0% |
| !! | GAGGATTGGCTAGTTTCTGA+AGG | - | chr7_2:60139759-60139778 | Msa1066180:intron | 45.0% |
| !! | GTTGAATCAGGAAGTGCTGT+AGG | - | chr7_2:60139807-60139826 | Msa1066180:intron | 45.0% |
| GAAACATCGCGTGAAATCGT+AGG | - | chr7_2:60139876-60139895 | Msa1066180:intron | 45.0% | |
| GAATATTTCAGCCGTTCCTG+AGG | - | chr7_2:60139980-60139999 | Msa1066180:intron | 45.0% | |
| AACTTGTCTCACCTCAGGAA+CGG | + | chr7_2:60139994-60140013 | None:intergenic | 45.0% | |
| ! | TCCTGAGGTGAGACAAGTTT+TGG | - | chr7_2:60139995-60140014 | Msa1066180:intron | 45.0% |
| TCCACTTCCTCAAGAATCTG+CGG | - | chr7_2:60140190-60140209 | Msa1066180:intron | 45.0% | |
| GCAGCGTTAAGGAATTTGGT+CGG | - | chr7_2:60140215-60140234 | Msa1066180:intron | 45.0% | |
| CAGCGTTAAGGAATTTGGTC+GGG | - | chr7_2:60140216-60140235 | Msa1066180:intron | 45.0% | |
| GTTAAGGAATTTGGTCGGGT+CGG | - | chr7_2:60140220-60140239 | Msa1066180:intron | 45.0% | |
| ! | GAGACAGCTTTGGTTTCGTT+AGG | - | chr7_2:60140248-60140267 | Msa1066180:intron | 45.0% |
| TTCAACACGTGAACCAAACG+AGG | + | chr7_2:60140281-60140300 | None:intergenic | 45.0% | |
| TTTCTGTCGAGCTGCTAACT+CGG | + | chr7_2:60140349-60140368 | None:intergenic | 45.0% | |
| AACAAGGAGAGGAATGCAAC+CGG | + | chr7_2:60140393-60140412 | None:intergenic | 45.0% | |
| CTTACTGAGATGGATACTCC+AGG | - | chr7_2:60140668-60140687 | Msa1066180:intron | 45.0% | |
| !!! | AATTATTTTTTAATTTGTAA+TGG | - | chr7_2:60138619-60138638 | Msa1066180:CDS | 5.0% |
| CAGGAGCAATATTGCTGCAC+TGG | - | chr7_2:60139653-60139672 | Msa1066180:CDS | 50.0% | |
| TCGCGTGAAATCGTAGGACA+TGG | - | chr7_2:60139882-60139901 | Msa1066180:intron | 50.0% | |
| CGTGAAATCGTAGGACATGG+TGG | - | chr7_2:60139885-60139904 | Msa1066180:intron | 50.0% | |
| ! | ACATGGTGGTGTTTGTCCGT+TGG | - | chr7_2:60139899-60139918 | Msa1066180:intron | 50.0% |
| AACCGGTGATTCTGTTTCGC+AGG | - | chr7_2:60139935-60139954 | Msa1066180:intron | 50.0% | |
| AGCCTGCGAAACAGAATCAC+CGG | + | chr7_2:60139940-60139959 | None:intergenic | 50.0% | |
| GCCAAAACTTGTCTCACCTC+AGG | + | chr7_2:60139999-60140018 | None:intergenic | 50.0% | |
| TGGCTCAAGAAGGGATTGTG+AGG | - | chr7_2:60140015-60140034 | Msa1066180:intron | 50.0% | |
| GGCTCAAGAAGGGATTGTGA+GGG | - | chr7_2:60140016-60140035 | Msa1066180:intron | 50.0% | |
| ACCGCAGATTCTTGAGGAAG+TGG | + | chr7_2:60140194-60140213 | None:intergenic | 50.0% | |
| GGTCGCAGCGTTAAGGAATT+TGG | - | chr7_2:60140211-60140230 | Msa1066180:intron | 50.0% | |
| !! | GTCGGTTTCTGAGACAGCTT+TGG | - | chr7_2:60140238-60140257 | Msa1066180:intron | 50.0% |
| CAAAACTGGTATGCTCGGCG+AGG | - | chr7_2:60139443-60139462 | Msa1066180:CDS | 55.0% | |
| ATCCTCGCAGCTACCCGATT+CGG | + | chr7_2:60139745-60139764 | None:intergenic | 55.0% | |
| AATCGGGTAGCTGCGAGGAT+TGG | - | chr7_2:60139745-60139764 | Msa1066180:intron | 55.0% | |
| TTGTATCGGAAGGCGGTGTC+AGG | - | chr7_2:60140144-60140163 | Msa1066180:intron | 55.0% | |
| AATCTGCGGTCGCAGCGTTA+AGG | - | chr7_2:60140204-60140223 | Msa1066180:intron | 55.0% | |
| GCTGCGACCGCAGATTCTTG+AGG | + | chr7_2:60140200-60140219 | None:intergenic | 60.0% | |
| CGTGTTGAAATCCGGCTCCC+CGG | - | chr7_2:60140292-60140311 | Msa1066180:intron | 60.0% | |
| GTGTTGAAATCCGGCTCCCC+GGG | - | chr7_2:60140293-60140312 | Msa1066180:intron | 60.0% | |
| ! | ATTTTGTGCTCCCGGGGAGC+CGG | + | chr7_2:60140306-60140325 | None:intergenic | 60.0% |
| ! | AGCGGCATTTTGTGCTCCCG+GGG | + | chr7_2:60140312-60140331 | None:intergenic | 60.0% |
| ! | CAGCGGCATTTTGTGCTCCC+GGG | + | chr7_2:60140313-60140332 | None:intergenic | 60.0% |
| ! | GCAGCGGCATTTTGTGCTCC+CGG | + | chr7_2:60140314-60140333 | None:intergenic | 60.0% |
| TCGGCAGATTGCTGACGCAG+CGG | + | chr7_2:60140330-60140349 | None:intergenic | 60.0% | |
| AGCCGAATCGGGTAGCTGCG+AGG | - | chr7_2:60139740-60139759 | Msa1066180:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 60137990 | 60140754 | 60137990 | ID=Msa1066180;Name=Msa1066180 |
| chr7_2 | mRNA | 60137990 | 60140754 | 60137990 | ID=Msa1066180-mRNA-1;Parent=Msa1066180;Name=Msa1066180-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|0|0|2|0|594 |
| chr7_2 | exon | 60140723 | 60140754 | 60140723 | ID=Msa1066180-mRNA-1:exon:11747;Parent=Msa1066180-mRNA-1 |
| chr7_2 | exon | 60137990 | 60139742 | 60137990 | ID=Msa1066180-mRNA-1:exon:11746;Parent=Msa1066180-mRNA-1 |
| chr7_2 | CDS | 60140723 | 60140754 | 60140723 | ID=Msa1066180-mRNA-1:cds;Parent=Msa1066180-mRNA-1 |
| chr7_2 | CDS | 60137990 | 60139742 | 60137990 | ID=Msa1066180-mRNA-1:cds;Parent=Msa1066180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
