AlfalfaGEDB | Msa1070740

M. sativa cultivar zhongmu-4 / Msa1070740

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007623 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032501 GO:0032922 GO:0036211 GO:0042176 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0065007 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1070740	RHN47457.1	100.000	708	0	0	1	708	178	885	0.0	1477

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1070740	sp\|Q852L0\|HD16N_ORYSJ	77.424	722	134	9	1	708	1	707	0.0	1115

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1070740	A0A396H929	100.000	708	0	0	1	708	178	885	0.0	1477

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1070740	Msa1158560	0.867620	1.196853e-65	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1070740	MtrunA17_Chr7g0253211	100.000	708	0	0	1	708	178	885	0.0	1477
Msa1070740	MtrunA17_Chr7g0214531	79.595	593	120	1	117	708	7	599	0.0	1019
Msa1070740	MtrunA17_Chr1g0213321	71.713	654	167	6	64	708	32	676	0.0	985
Msa1070740	MtrunA17_Chr3g0140431	74.958	595	140	2	117	707	8	597	0.0	961
Msa1070740	MtrunA17_Chr1g0146301	72.320	625	157	5	89	707	69	683	0.0	957
Msa1070740	MtrunA17_Chr8g0340491	71.549	594	165	3	117	707	98	690	0.0	890
Msa1070740	MtrunA17_Chr4g0071031	38.754	289	159	6	140	425	4	277	6.73e-59	206
Msa1070740	MtrunA17_Chr2g0329981	38.062	289	161	6	140	425	4	277	1.59e-57	202
Msa1070740	MtrunA17_Chr8g0342821	38.408	289	159	7	140	425	4	276	1.02e-56	200
Msa1070740	MtrunA17_Chr2g0299661	37.370	289	163	6	140	425	4	277	1.17e-56	200

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1070740	AT3G03940.1	83.616	708	109	3	1	708	1	701	0.0	1221
Msa1070740	AT5G18190.2	81.638	708	113	4	1	708	1	691	0.0	1175
Msa1070740	AT5G18190.1	81.638	708	113	4	1	708	1	691	0.0	1175
Msa1070740	AT3G13670.1	75.500	600	142	2	113	707	103	702	0.0	985
Msa1070740	AT2G25760.1	72.013	611	163	4	104	707	63	672	0.0	954
Msa1070740	AT2G25760.2	71.824	614	162	6	104	707	63	675	0.0	946
Msa1070740	AT3G03930.1	73.878	245	63	1	464	707	43	287	1.38e-129	385
Msa1070740	AT4G26100.1	38.062	289	161	6	140	425	4	277	4.86e-58	204
Msa1070740	AT2G19470.1	38.754	289	159	6	140	425	4	277	1.34e-57	202
Msa1070740	AT1G72710.1	38.754	289	158	7	140	425	4	276	4.02e-57	201

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Find 277 sgRNAs with CRISPR-Local

Find 537 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCACAGATCGAGACG+TGG	0.693855	7_2:-67046910	None:intergenic
AAAAGGGAGATTGCCGTGGC+AGG	0.468289	7_2:+67049826	Msa1070740:CDS
AAAGAAAGCCAACCTTGTGC+AGG	0.526157	7_2:-67050884	None:intergenic
AAAGCCAACCTTGTGCAGGA+AGG	0.628987	7_2:-67050880	None:intergenic
AAAGCTCCATCAATTCTAAT+AGG	0.345290	7_2:-67050146	None:intergenic
AAAGGATTTACCCTTTCAAA+TGG	0.397776	7_2:-67049224	None:intergenic
AAAGGGAGATTGCCGTGGCA+GGG	0.586233	7_2:+67049827	Msa1070740:CDS
AAATGATTCGCTCACTTTGT+AGG	0.366607	7_2:-67051913	None:intergenic
AAATGGAAGGATGCATCATC+TGG	0.447277	7_2:+67049584	Msa1070740:CDS
AACAGAACTAGGAGGAGAGT+TGG	0.448810	7_2:+67047762	Msa1070740:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGATTGATGAAGAAAAGAG+AGG	-	chr7_2:67046603-67046622	None:intergenic	30.0%
TATTACAAAAACCGAACACA+AGG	+	chr7_2:67046659-67046678	Msa1070740:five_prime_UTR	30.0%
GGTGATTGATGAATGAAATT+AGG	-	chr7_2:67046731-67046750	None:intergenic	30.0%
AAAAACTGAATAACCGTCAT+CGG	-	chr7_2:67047049-67047068	None:intergenic	30.0%
AGATTTCTTTGTATGCTCTT+AGG	+	chr7_2:67047362-67047381	Msa1070740:intron	30.0%
AATAATAACATTGCGATGGA+GGG	+	chr7_2:67047984-67048003	Msa1070740:CDS	30.0%
TAATGAAAAACAGCAAAGCA+TGG	-	chr7_2:67048191-67048210	None:intergenic	30.0%
TTCCTTTCTGTCTTATATAC+AGG	-	chr7_2:67048421-67048440	None:intergenic	30.0%
ATATAAGACAGAAAGGAAGT+TGG	+	chr7_2:67048423-67048442	Msa1070740:CDS	30.0%
TATAAGACAGAAAGGAAGTT+GGG	+	chr7_2:67048424-67048443	Msa1070740:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	67046457	67053259	67046457	ID=Msa1070740;Name=Msa1070740
chr7_2	mRNA	67046457	67053259	67046457	ID=Msa1070740-mRNA-1;Parent=Msa1070740;Name=Msa1070740-mRNA-1;_AED=0.11;_eAED=0.11;_QI=489\|1\|1\|1\|0.88\|0.88\|18\|451\|708
chr7_2	exon	67046457	67046472	67046457	ID=Msa1070740-mRNA-1:exon:14431;Parent=Msa1070740-mRNA-1
chr7_2	exon	67046510	67046923	67046510	ID=Msa1070740-mRNA-1:exon:14432;Parent=Msa1070740-mRNA-1
chr7_2	exon	67047598	67048070	67047598	ID=Msa1070740-mRNA-1:exon:14433;Parent=Msa1070740-mRNA-1
chr7_2	exon	67048400	67048525	67048400	ID=Msa1070740-mRNA-1:exon:14434;Parent=Msa1070740-mRNA-1
chr7_2	exon	67048659	67048732	67048659	ID=Msa1070740-mRNA-1:exon:14435;Parent=Msa1070740-mRNA-1
chr7_2	exon	67048854	67048923	67048854	ID=Msa1070740-mRNA-1:exon:14436;Parent=Msa1070740-mRNA-1
chr7_2	exon	67049002	67049057	67049002	ID=Msa1070740-mRNA-1:exon:14437;Parent=Msa1070740-mRNA-1
chr7_2	exon	67049164	67049235	67049164	ID=Msa1070740-mRNA-1:exon:14438;Parent=Msa1070740-mRNA-1
chr7_2	exon	67049343	67049437	67049343	ID=Msa1070740-mRNA-1:exon:14439;Parent=Msa1070740-mRNA-1
chr7_2	exon	67049579	67049645	67049579	ID=Msa1070740-mRNA-1:exon:14440;Parent=Msa1070740-mRNA-1
chr7_2	exon	67049727	67049856	67049727	ID=Msa1070740-mRNA-1:exon:14441;Parent=Msa1070740-mRNA-1
chr7_2	exon	67049954	67050172	67049954	ID=Msa1070740-mRNA-1:exon:14442;Parent=Msa1070740-mRNA-1
chr7_2	exon	67050272	67050402	67050272	ID=Msa1070740-mRNA-1:exon:14443;Parent=Msa1070740-mRNA-1
chr7_2	exon	67050719	67050893	67050719	ID=Msa1070740-mRNA-1:exon:14444;Parent=Msa1070740-mRNA-1
chr7_2	exon	67050995	67051085	67050995	ID=Msa1070740-mRNA-1:exon:14445;Parent=Msa1070740-mRNA-1
chr7_2	exon	67051892	67052049	67051892	ID=Msa1070740-mRNA-1:exon:14446;Parent=Msa1070740-mRNA-1
chr7_2	exon	67052146	67052334	67052146	ID=Msa1070740-mRNA-1:exon:14447;Parent=Msa1070740-mRNA-1
chr7_2	exon	67052749	67053259	67052749	ID=Msa1070740-mRNA-1:exon:14448;Parent=Msa1070740-mRNA-1
chr7_2	five_prime_UTR	67046457	67046472	67046457	ID=Msa1070740-mRNA-1:five_prime_utr;Parent=Msa1070740-mRNA-1
chr7_2	five_prime_UTR	67046510	67046923	67046510	ID=Msa1070740-mRNA-1:five_prime_utr;Parent=Msa1070740-mRNA-1
chr7_2	five_prime_UTR	67047598	67047656	67047598	ID=Msa1070740-mRNA-1:five_prime_utr;Parent=Msa1070740-mRNA-1
chr7_2	CDS	67047657	67048070	67047657	ID=Msa1070740-mRNA-1:cds;Parent=Msa1070740-mRNA-1
chr7_2	CDS	67048400	67048525	67048400	ID=Msa1070740-mRNA-1:cds;Parent=Msa1070740-mRNA-1
chr7_2	CDS	67048659	67048732	67048659	ID=Msa1070740-mRNA-1:cds;Parent=Msa1070740-mRNA-1
chr7_2	CDS	67048854	67048923	67048854	ID=Msa1070740-mRNA-1:cds;Parent=Msa1070740-mRNA-1
chr7_2	CDS	67049002	67049057	67049002	ID=Msa1070740-mRNA-1:cds;Parent=Msa1070740-mRNA-1
chr7_2	CDS	67049164	67049235	67049164	ID=Msa1070740-mRNA-1:cds;Parent=Msa1070740-mRNA-1
chr7_2	CDS	67049343	67049437	67049343	ID=Msa1070740-mRNA-1:cds;Parent=Msa1070740-mRNA-1
chr7_2	CDS	67049579	67049645	67049579	ID=Msa1070740-mRNA-1:cds;Parent=Msa1070740-mRNA-1
chr7_2	CDS	67049727	67049856	67049727	ID=Msa1070740-mRNA-1:cds;Parent=Msa1070740-mRNA-1
chr7_2	CDS	67049954	67050172	67049954	ID=Msa1070740-mRNA-1:cds;Parent=Msa1070740-mRNA-1
chr7_2	CDS	67050272	67050402	67050272	ID=Msa1070740-mRNA-1:cds;Parent=Msa1070740-mRNA-1
chr7_2	CDS	67050719	67050893	67050719	ID=Msa1070740-mRNA-1:cds;Parent=Msa1070740-mRNA-1
chr7_2	CDS	67050995	67051085	67050995	ID=Msa1070740-mRNA-1:cds;Parent=Msa1070740-mRNA-1
chr7_2	CDS	67051892	67052049	67051892	ID=Msa1070740-mRNA-1:cds;Parent=Msa1070740-mRNA-1
chr7_2	CDS	67052146	67052334	67052146	ID=Msa1070740-mRNA-1:cds;Parent=Msa1070740-mRNA-1
chr7_2	CDS	67052749	67052808	67052749	ID=Msa1070740-mRNA-1:cds;Parent=Msa1070740-mRNA-1
chr7_2	three_prime_UTR	67052809	67053259	67052809	ID=Msa1070740-mRNA-1:three_prime_utr;Parent=Msa1070740-mRNA-1

Gene Sequence

>Msa1070740

ATGCCAGAGTTGAGAAGTGGAGCAAGAAGGTCAAAGCGGCTTGGAGATCTTCAGCCTGGTCCACAACCTGTTGATCAAGGAGAGAATTGGGCAGAGCCTGCGCAGAACAGAACTAGGAGGAGAGTTGGAGGTGGAAGAGGAAGAGGCGGTAATGCCACAGGTTTAGGTAAAGGGTCTTCACCAGCTGTACCCACGAGACGAACTGCAGCTGGTAGAGGCCGCGGAGCAAGATTGATTGATTTGGATCCTCAACCTTGTGACCTCCTTCCAGAACCTGTTGCATTAAGGGCGCAGGAACCTGTTTACAATAACGTAGAGGTAGTGGCCAATAATAACATTGCGATGGAGGGTGGAAGTGGTGATAAAGGGGTGGCAGCTGAAGAAGACGCAAGCACAACCCCTGTCCCTGAGAGGGTGCAAGTTGGCAACTCTCCTGTATATAAGACAGAAAGGAAGTTGGGTAAGGGCGGTTTCGGCCAAGTTTATGTTGGCAGAAGGGTTAGTGGTGGCTCTGATCGAGTAGGTCCTGATGCTATTGAGGTTGCACTCAAGTTTGAGCATAGAAACAGTAAAGGTTGTAATTATGGGCCTCCCTATGAGTGGCAAGTTTACAGCAATCTGAATGGCTGTTATGGCATTCCCGGGGTTCATTACAAGGGTCGACAAGGAGATTTCTACATTTTGGTTATGGACATACTTGGGCCCAGCCTTTGGGATGTATGGAATTCTCTTGGTCAATCAATGTCACCAAGTATGGCTGCTTGCATTGCAGTGGAGGCAATATCAATTCTTGAGAAGCTCCATTTGAAAGGGTTTGTGCACGGAGATGTAAAACCAGAAAACTTTTTGCTTGGTCAACCTGGAACGGCTGATGATAAGAAGTTATATCTTATTGATCTTGGTTTAGCTTCTAAATGGAAGGATGCATCATCTGGTCAACACGTCGAATATGATCAGAGACCTGATATATTCAGGGGAACGATAAGATATGCTAGTGTACATGCACATTTAGGTAGGACTGGCAGTCGAAGGGATGATCTTGAGTCACTGGCATACACATTGATATTTCTCATAAAAGGGAGATTGCCGTGGCAGGGTTATCAGGGCGACAATAAAAGTTTTCTTGTTTGTAAGAAAAAAATGTCCACTTCTGCGGAGTTGATGTGTTGCTTTTGTCCCGCCCCATTTAAGCTGTTCCTAGAAGCAGTTACTAACATGAGATTTGATGAGGAGCCAAATTATTCCAAGCTTATATCACTTTTTGACAGCTTGATCGAACCATGCACTCCATTGAGACCTATTAGAATTGATGGAGCTTTAAAGGTTGGTCAAAAACGAGGAAGGATGCTTATTAATCTGGAAGAAGATGAGCAGCCTAAGAAAAAAGTGCGATTGGGTAGTCCTGCTACTCAGTGGATATCAGTGTATAATGCACGCCGTCCAATGAAGCAGAGATATCACTATAACGTAGCAGACAATAGGCTCCGGCAGCATGTAGACAAGGGCATTGAGGATGGGTTGTATATAAGCTGTGTGGCCTCTTCAGCGAATTTGTGGGCCCTGATCATGGATGCAGGAACAGGTTTTTCTTCCCAAGTTTATGAGTTGTCACCGGCCTTCCTGCACAAGGATTGGATTATGGAGCAATGGGAGAAAAATTACTATATCAGTTCAATAGCTGGTGCAGTTAATGGCAGTTCCTTGGTTGTCATGTCCAAAGGAACTCCTTATACACAGCAGTCCTACAAAGTGAGCGAATCATTTCCTTTCAAATGGATAAACAAGAAGTGGAAAGAAGGGTTCCATGTCACCTCCATGACTACTGCTGGCAGTCGTTGGGGCGTTGTTATGTCCAGGAATGCTGGGTATTCTGATCAGGTTGTGGAGCTGGACTTTTTGTATCCAAGTGAAGGAATCCATCGAAGATGGGAAAATAATTACCGGATTACTTCTATGGCTGCTACTAATGATCAGGCAGCCTTCATACTTAGCATACCAAAACGCAAATTACTAGACGAGACTCAAGAGACTCTGCGGACATCTGCTTTCCCTAGCACCCATGTAAAGGAGAAATGGTCCAAGAATCTCTATATTGCCTCGATATGTTATGGGCGAACTGTTTGCTAG

Protein sequence

>Msa1070740

MPELRSGARRSKRLGDLQPGPQPVDQGENWAEPAQNRTRRRVGGGRGRGGNATGLGKGSSPAVPTRRTAAGRGRGARLIDLDPQPCDLLPEPVALRAQEPVYNNVEVVANNNIAMEGGSGDKGVAAEEDASTTPVPERVQVGNSPVYKTERKLGKGGFGQVYVGRRVSGGSDRVGPDAIEVALKFEHRNSKGCNYGPPYEWQVYSNLNGCYGIPGVHYKGRQGDFYILVMDILGPSLWDVWNSLGQSMSPSMAACIAVEAISILEKLHLKGFVHGDVKPENFLLGQPGTADDKKLYLIDLGLASKWKDASSGQHVEYDQRPDIFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIFLIKGRLPWQGYQGDNKSFLVCKKKMSTSAELMCCFCPAPFKLFLEAVTNMRFDEEPNYSKLISLFDSLIEPCTPLRPIRIDGALKVGQKRGRMLINLEEDEQPKKKVRLGSPATQWISVYNARRPMKQRYHYNVADNRLRQHVDKGIEDGLYISCVASSANLWALIMDAGTGFSSQVYELSPAFLHKDWIMEQWEKNYYISSIAGAVNGSSLVVMSKGTPYTQQSYKVSESFPFKWINKKWKEGFHVTSMTTAGSRWGVVMSRNAGYSDQVVELDFLYPSEGIHRRWENNYRITSMAATNDQAAFILSIPKRKLLDETQETLRTSAFPSTHVKEKWSKNLYIASICYGRTVC*