AlfalfaGEDB | Msa1072010

M. sativa cultivar zhongmu-4 / Msa1072010

KEGG: K10523
GO: GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0031668 GO:0033554 GO:0042221 GO:0042631 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071470 GO:0071472 GO:0071496 GO:0104004 GO:1901700 GO:1901701
PFAM: PF00651.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1072010	KAG4927640.1	69.873	395	21	6	3	309	12	396	0.0	519

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1072010	sp\|Q9SRV1\|BPM4_ARATH	66.812	229	38	3	8	198	36	264	1.02e-100	306
Msa1072010	sp\|Q9SRV1\|BPM4_ARATH	57.692	104	27	5	198	296	349	440	8.91e-25	107

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1072010	A0A2Z6M1Q3	67.929	396	40	7	1	310	19	413	1.47e-174	498

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TFs/TRs:

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Gene ID	Type	Classification
Msa1072010	TR	TRAF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0218370	Msa1072010	0.805594	1.238000e-49	-8.615850e-47
Msa1072010	Msa1374470	0.811535	6.669779e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1072010	MtrunA17_Chr7g0254001	83.475	236	1	3	1	198	1	236	8.96e-133	384
Msa1072010	MtrunA17_Chr7g0254001	88.696	115	3	1	196	310	318	422	2.78e-65	211
Msa1072010	MtrunA17_Chr5g0440341	65.639	227	40	3	10	198	23	249	1.95e-99	298
Msa1072010	MtrunA17_Chr5g0440341	52.874	87	28	3	196	280	331	406	6.46e-18	83.6
Msa1072010	MtrunA17_Chr7g0259501	54.338	219	61	4	17	196	36	254	5.42e-72	228
Msa1072010	MtrunA17_Chr1g0185861	54.128	218	61	4	18	196	41	258	1.27e-69	222
Msa1072010	MtrunA17_Chr4g0002921	64.634	164	37	2	16	158	23	186	7.70e-69	218

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1072010	AT3G03740.1	66.812	229	38	3	8	198	36	264	1.04e-101	306
Msa1072010	AT3G03740.1	57.692	104	27	5	198	296	349	440	9.06e-26	107
Msa1072010	AT3G43700.3	59.657	233	56	3	4	198	21	253	6.37e-94	283
Msa1072010	AT3G43700.2	59.657	233	56	3	4	198	21	253	6.44e-94	283
Msa1072010	AT3G43700.1	59.657	233	56	3	4	198	21	253	2.45e-93	283
Msa1072010	AT3G43700.1	51.724	87	31	2	196	281	338	414	9.35e-14	71.6
Msa1072010	AT5G21010.1	52.098	286	90	6	6	251	16	294	1.86e-86	265
Msa1072010	AT5G21010.1	47.191	89	34	3	196	281	331	409	4.39e-15	75.5
Msa1072010	AT3G06190.2	43.396	318	101	6	2	280	16	293	2.26e-73	228
Msa1072010	AT2G39760.4	51.502	233	74	4	4	197	10	242	9.86e-72	225

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Find 104 sgRNAs with CRISPR-Local

Find 549 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGGGCCCACACACTT+CGG	0.579983	7_2:-68931104	None:intergenic
AAAGGCTACTCACTTGCAAA+AGG	0.489102	7_2:+68924000	Msa1072010:CDS
AACCTGCACCCAACGGTTTA+TGG	0.177780	7_2:-68931636	None:intergenic
AAGGAAAATGCCGAAGTGTG+TGG	0.618132	7_2:+68931094	Msa1072010:CDS
AATAAACAAACTCACCAACA+AGG	0.669992	7_2:-68926072	None:intergenic
AATATTAAGGGAAGAACTGC+AGG	0.516148	7_2:-68931701	None:intergenic
ACAAACTTGGGAAAACGGAG+TGG	0.690303	7_2:+68931164	Msa1072010:CDS
ACAACAATAAGTCCCCTATT+TGG	0.318709	7_2:+68931322	Msa1072010:three_prime_UTR
ACAAGCTTGTTATGGCAGCC+CGG	0.567478	7_2:+68925528	Msa1072010:CDS
ACCGACGGTGAAAGTCTCGC+TGG	0.614457	7_2:-68924046	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATAAGCAGAATTATCTTCT+GGG	-	chr7_2:68924113-68924132	None:intergenic	30.0%
ACATAAGCAGAATTATCTTC+TGG	-	chr7_2:68924114-68924133	None:intergenic	30.0%
AACATACACTAAAGCTAGTT+GGG	-	chr7_2:68924529-68924548	None:intergenic	30.0%
AAACATACACTAAAGCTAGT+TGG	-	chr7_2:68924530-68924549	None:intergenic	30.0%
TTTCAGTAAAAGCTACACTT+TGG	-	chr7_2:68924595-68924614	None:intergenic	30.0%
AGGACACAATACATCTTAAT+TGG	-	chr7_2:68924763-68924782	None:intergenic	30.0%
TGTTAACTCGCTATAATTCA+AGG	-	chr7_2:68924783-68924802	None:intergenic	30.0%
AAATTGTACTATGTGCTACA+TGG	+	chr7_2:68924979-68924998	Msa1072010:intron	30.0%
AGAATAAACATATGTCCAGA+AGG	-	chr7_2:68925079-68925098	None:intergenic	30.0%
AAAAGATAGCTACAAAAGGA+CGG	-	chr7_2:68925677-68925696	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	68923925	68931712	68923925	ID=Msa1072010;Name=Msa1072010
chr7_2	mRNA	68923925	68931712	68923925	ID=Msa1072010-mRNA-1;Parent=Msa1072010;Name=Msa1072010-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0\|0\|0.16\|1\|0\|0.16\|6\|452\|310
chr7_2	exon	68923925	68924102	68923925	ID=Msa1072010-mRNA-1:exon:15222;Parent=Msa1072010-mRNA-1
chr7_2	exon	68924163	68924292	68924163	ID=Msa1072010-mRNA-1:exon:15223;Parent=Msa1072010-mRNA-1
chr7_2	exon	68925295	68925465	68925295	ID=Msa1072010-mRNA-1:exon:15224;Parent=Msa1072010-mRNA-1
chr7_2	exon	68925517	68925631	68925517	ID=Msa1072010-mRNA-1:exon:15225;Parent=Msa1072010-mRNA-1
chr7_2	exon	68926043	68926109	68926043	ID=Msa1072010-mRNA-1:exon:15226;Parent=Msa1072010-mRNA-1
chr7_2	exon	68930989	68931712	68930989	ID=Msa1072010-mRNA-1:exon:15227;Parent=Msa1072010-mRNA-1
chr7_2	CDS	68923925	68924102	68923925	ID=Msa1072010-mRNA-1:cds;Parent=Msa1072010-mRNA-1
chr7_2	CDS	68924163	68924292	68924163	ID=Msa1072010-mRNA-1:cds;Parent=Msa1072010-mRNA-1
chr7_2	CDS	68925295	68925465	68925295	ID=Msa1072010-mRNA-1:cds;Parent=Msa1072010-mRNA-1
chr7_2	CDS	68925517	68925631	68925517	ID=Msa1072010-mRNA-1:cds;Parent=Msa1072010-mRNA-1
chr7_2	CDS	68926043	68926109	68926043	ID=Msa1072010-mRNA-1:cds;Parent=Msa1072010-mRNA-1
chr7_2	CDS	68930989	68931260	68930989	ID=Msa1072010-mRNA-1:cds;Parent=Msa1072010-mRNA-1
chr7_2	three_prime_UTR	68931261	68931712	68931261	ID=Msa1072010-mRNA-1:three_prime_utr;Parent=Msa1072010-mRNA-1

Gene Sequence

>Msa1072010

ATGAGCATTCTGTCATCACGAACAAGTTCTCGTTCCGTAACAGAAACGGTAAACGGTTCACACAAGTTCGTAATCAAAGGCTACTCACTTGCAAAAGGAATGGGAGTTGGTAAACACATAGCCAGCGAGACTTTCACCGTCGGTGGTTACCAATGGGCAATTTACTTCTACCCCGACGGTACCGATGTTAGAGCTCTTTTTGAACTCACTTTGCTTGATCAGAGTCCTAATGGAAAGCATAAGGTTCATAGTCATTTTGATCGTTCTCTTGAGAGTGGTCCTTATACTCTTAAGTATCGCGGCAGCATGGGGTATAAGCGGTTTTTCAAACGTGCTCAACTCGAGGCGTCGTCCTTCCTTAAGGATGACTGTTTGAAGATAAACTGCACCGTTGGTGTTGTTGTGTCGTCCATAGATTGCTCTAAATTGACCACCATACATGTTCCTGAATCTGACATTGGATCTCATTTTGGCATGCTGTTTCATGCACACAAGCTTGTTATGGCAGCCCGGTCAACTGCATTTGAAACTGAGTTTTTCAATAGTATGGAGGAAGATGACCGTGATGTAGTTGTTACGGACATGGAACCTAAGTCCATCTGTCTACAATTTTCTGCTGAAAACCTTGTTGGTGAGTTTGTTTATTTCCCACAAAAGTATACTGTGATGCAGTCTGATGGTTTTGAGTATCTAAAAGAAAACTGTCCGTTGCTGCAATCAGAATTGCTTAAGACAGTTGCAGGAGGCGAAGAGGAATTTAGCGGTGAAGGAAAATGCCGAAGTGTGTGGGCCCAAGTTTCTGATGGCGGTGAGACTAATGATAGGAGCGTAAGACAACAAACTTGGGAAAACGGAGTGGAAAGAGGTCAGAACTTATGGGTTAACCTTTCTGATGGTGTTAACAATGATCGGAGTCCAGGGCAAGAAGCTTGA

Protein sequence

>Msa1072010

MSILSSRTSSRSVTETVNGSHKFVIKGYSLAKGMGVGKHIASETFTVGGYQWAIYFYPDGTDVRALFELTLLDQSPNGKHKVHSHFDRSLESGPYTLKYRGSMGYKRFFKRAQLEASSFLKDDCLKINCTVGVVVSSIDCSKLTTIHVPESDIGSHFGMLFHAHKLVMAARSTAFETEFFNSMEEDDRDVVVTDMEPKSICLQFSAENLVGEFVYFPQKYTVMQSDGFEYLKENCPLLQSELLKTVAGGEEEFSGEGKCRSVWAQVSDGGETNDRSVRQQTWENGVERGQNLWVNLSDGVNNDRSPGQEA*