AlfalfaGEDB | Msa1081580

M. sativa cultivar zhongmu-4 / Msa1081580

KEGG: -
GO: GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00643.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1081580	XP_003625866.1	93.817	372	10	1	1	359	1	372	0.0	712

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1081580	sp\|O82256\|COL13_ARATH	45.559	349	157	6	14	356	7	328	8.99e-96	291

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1081580	G7KQZ2	93.817	372	10	1	1	359	1	372	0.0	712

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TFs/TRs:

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Gene ID	Type	Classification
Msa1081580	TF	C2C2-CO-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1081580	Msa1081670	0.809789	1.590941e-50	-8.615850e-47
Msa1081580	Msa1082210	0.800552	1.365843e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1081580	MtrunA17_Chr7g0268691	93.817	372	10	1	1	359	1	372	0.0	712
Msa1081580	MtrunA17_Chr3g0120711	50.000	100	50	0	20	119	5	104	8.26e-30	118
Msa1081580	MtrunA17_Chr3g0120711	62.500	48	18	0	309	356	348	395	7.18e-12	66.2
Msa1081580	MtrunA17_Chr7g0251781	45.255	137	57	4	19	148	4	129	3.95e-29	116
Msa1081580	MtrunA17_Chr7g0251781	68.889	45	14	0	312	356	338	382	1.05e-13	71.6
Msa1081580	MtrunA17_Chr5g0429341	48.515	101	51	1	20	119	5	105	5.08e-29	116
Msa1081580	MtrunA17_Chr2g0322941	45.000	100	54	1	20	119	44	142	9.04e-22	92.8
Msa1081580	MtrunA17_Chr1g0209071	37.736	106	64	1	18	123	3	106	1.78e-20	91.3
Msa1081580	MtrunA17_Chr7g0220721	36.283	113	64	3	18	126	24	132	1.16e-18	86.7
Msa1081580	MtrunA17_Chr1g0150471	40.698	86	50	1	20	104	6	91	5.06e-18	83.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1081580	AT2G47890.1	45.559	349	157	6	14	356	7	328	9.14e-97	291
Msa1081580	AT2G47890.3	42.105	323	154	6	14	330	7	302	1.37e-77	241
Msa1081580	AT2G47890.2	51.163	215	81	3	14	227	7	198	1.87e-71	223
Msa1081580	AT3G07650.3	30.563	373	202	14	20	356	5	356	2.68e-39	143
Msa1081580	AT3G07650.2	30.563	373	202	14	20	356	5	356	2.68e-39	143
Msa1081580	AT3G07650.4	30.563	373	202	14	20	356	5	356	2.68e-39	143
Msa1081580	AT3G07650.1	30.563	373	202	14	20	356	5	356	2.68e-39	143
Msa1081580	AT1G28050.1	36.735	196	100	6	19	209	8	184	4.74e-34	130
Msa1081580	AT1G28050.1	59.259	54	22	0	303	356	373	426	6.81e-13	69.7
Msa1081580	AT2G33500.2	51.351	111	53	1	19	128	11	121	1.35e-33	129

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Find 119 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGTAAACCCTTGGAT+TGG	0.551178	7_2:-81399009	Msa1081580:three_prime_UTR
AAAATTCTGTATCTTCTGTT+GGG	0.344125	7_2:-81400565	Msa1081580:CDS
AAACCTGTAGATAAATTTGC+TGG	0.420931	7_2:+81401037	None:intergenic
AAAGGGATTCTGCATTATTA+CGG	0.421974	7_2:-81400430	Msa1081580:CDS
AAATGTGAGGAGAAAAGGTT+AGG	0.495302	7_2:+81402346	None:intergenic
AAATTCTGTATCTTCTGTTG+GGG	0.580389	7_2:-81400564	Msa1081580:CDS
AACATAGTCATAATATTTAT+TGG	0.170312	7_2:+81399251	None:intergenic
AAGATAGAGCACTGAAATCA+TGG	0.495586	7_2:-81399821	Msa1081580:intron
AAGCACAAGTTGTTGAAGTG+AGG	0.641309	7_2:+81402438	None:intergenic
AAGGTGCTTATGTTTGGACA+AGG	0.636395	7_2:-81399308	Msa1081580:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCTTTCTGATATGTTTGTTT+GGG	-	chr7_2:81399595-81399614	Msa1081580:intron	30.0%
TCATCAAGACTAACAAAAGA+AGG	+	chr7_2:81399626-81399645	None:intergenic	30.0%
TTCTCATAATTATCGTGCTA+TGG	-	chr7_2:81399667-81399686	Msa1081580:intron	30.0%
TATTGGCATATCCAAATAAG+GGG	+	chr7_2:81399780-81399799	None:intergenic	30.0%
TTTATTCTGTGTGCTCAAAA+GGG	-	chr7_2:81399895-81399914	Msa1081580:CDS	30.0%
TTTAATTCTCTGATTCTTGG+GGG	-	chr7_2:81400084-81400103	Msa1081580:intron	30.0%
AGTAAATAATGTCTGGTCAA+AGG	-	chr7_2:81400140-81400159	Msa1081580:intron	30.0%
GTTATTGAAACAGAATCGTA+AGG	-	chr7_2:81400297-81400316	Msa1081580:intron	30.0%
ATATACTCTTCAGGATCATA+GGG	+	chr7_2:81400385-81400404	None:intergenic	30.0%
TATATACTCTTCAGGATCAT+AGG	+	chr7_2:81400386-81400405	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	81398988	81402480	81398988	ID=Msa1081580;Name=Msa1081580
chr7_2	mRNA	81398988	81402480	81398988	ID=Msa1081580-mRNA-1;Parent=Msa1081580;Name=Msa1081580-mRNA-1;_AED=0.14;_eAED=0.14;_QI=164\|1\|1\|1\|0.5\|0.8\|5\|469\|359
chr7_2	exon	81398988	81399449	81398988	ID=Msa1081580-mRNA-1:exon:20871;Parent=Msa1081580-mRNA-1
chr7_2	exon	81399822	81399919	81399822	ID=Msa1081580-mRNA-1:exon:20870;Parent=Msa1081580-mRNA-1
chr7_2	exon	81400404	81400672	81400404	ID=Msa1081580-mRNA-1:exon:20869;Parent=Msa1081580-mRNA-1
chr7_2	exon	81400997	81401158	81400997	ID=Msa1081580-mRNA-1:exon:20868;Parent=Msa1081580-mRNA-1
chr7_2	exon	81401759	81402480	81401759	ID=Msa1081580-mRNA-1:exon:20867;Parent=Msa1081580-mRNA-1
chr7_2	five_prime_UTR	81402317	81402480	81402317	ID=Msa1081580-mRNA-1:five_prime_utr;Parent=Msa1081580-mRNA-1
chr7_2	CDS	81401759	81402316	81401759	ID=Msa1081580-mRNA-1:cds;Parent=Msa1081580-mRNA-1
chr7_2	CDS	81400997	81401158	81400997	ID=Msa1081580-mRNA-1:cds;Parent=Msa1081580-mRNA-1
chr7_2	CDS	81400404	81400672	81400404	ID=Msa1081580-mRNA-1:cds;Parent=Msa1081580-mRNA-1
chr7_2	CDS	81399829	81399919	81399829	ID=Msa1081580-mRNA-1:cds;Parent=Msa1081580-mRNA-1
chr7_2	three_prime_UTR	81399822	81399828	81399822	ID=Msa1081580-mRNA-1:three_prime_utr;Parent=Msa1081580-mRNA-1
chr7_2	three_prime_UTR	81398988	81399449	81398988	ID=Msa1081580-mRNA-1:three_prime_utr;Parent=Msa1081580-mRNA-1

Gene Sequence

>Msa1081580

ATGGGTGGTTCTCCTAGAAACCCTAACCCTAACCCTTCACACAAACTATTTCGACCTTGTGATTATTGTGGCAATTCAAACGCAGTTATATACTGCAGAGCAGATTCAGCCAAACTCTGTTTCTCTTGTGATCGTGAAGTTCACTCCACAAATCAACTCTTCTCTAAGCACACACGCTCCTTAATCTGTGATTCATGCGATGATTCACCTGCAACCATCCTCTGTTCTACAGAATCCTCTGTTTTCTGTCAAAACTGTGACTGGGAAAATCACAACCTTTCACTATCTTCACCTCATGAACGAAGGCCTCTTGAGGGTTTTACAGGGTGCCCTTCAGTTACTGAGCTTTTGTCGATTCTGGGTTTGCAGGATATTGGAAAAAAATCTTTGCTTTTGCCTCAGGAAAGTGTAGGAGATGGGTTTGTAGGGTATGAGATTGAAGGGCTTTCTGATATGTTTGTTTGGGATGCTCCTTCTTTTGTTAGTCTTGATGATCTTATTTCTTCTTCTCCTTCTTCTCATAATTATCGTGCTATGGAGGTTCCTCCTTTGCCCAAGAATCGTAAGGCTGCTTGTGGTAGACATAGAGAAGAGATTTTAAATCAGCTTCGTGAGATGACAAAGTCTGAGCCCTATGATCCTGAAGAGTATATACCACCAGCAAATTTATCTACAGGTTTTGATTGCGACGTAAAGGCTGATATCGTTCCTTCAAATGAGTGGCTCAGAGAAAGCAGCGAGCCTATGTATCAAGTTGTTCCTGTTGATACATCATTCAAAGCTCATACCGAAGAAATTTCTCTTAAAAATTCTGTATCTTCTGTTGGGGAGCCTCATACCCATTGTAACAATGGAGGGATGCCTTCAGAATCTCTCAAGTCTGAAACCTTGTCAACTACTCCTAAAGCTGTTCCTCCTCCATATGAGTTAGCAAGTCAAGAAAGGGATTCTGCATTATTACGGTACAAGCAAAAGAAGAAAACAAGAAGATATGACAAGCATATAAGGTATGAATCACGTAAAGTTAGGGCGGAGAGCAGGACAAGAGTTAAGGGCCGATTTGCGAAGATAGAGCACTGA

Protein sequence

>Msa1081580

MGGSPRNPNPNPSHKLFRPCDYCGNSNAVIYCRADSAKLCFSCDREVHSTNQLFSKHTRSLICDSCDDSPATILCSTESSVFCQNCDWENHNLSLSSPHERRPLEGFTGCPSVTELLSILGLQDIGKKSLLLPQESVGDGFVGYEIEGLSDMFVWDAPSFVSLDDLISSSPSSHNYRAMEVPPLPKNRKAACGRHREEILNQLREMTKSEPYDPEEYIPPANLSTGFDCDVKADIVPSNEWLRESSEPMYQVVPVDTSFKAHTEEISLKNSVSSVGEPHTHCNNGGMPSESLKSETLSTTPKAVPPPYELASQERDSALLRYKQKKKTRRYDKHIRYESRKVRAESRTRVKGRFAKIEH*