Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1081580 | XP_003625866.1 | 93.817 | 372 | 10 | 1 | 1 | 359 | 1 | 372 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1081580 | sp|O82256|COL13_ARATH | 45.559 | 349 | 157 | 6 | 14 | 356 | 7 | 328 | 8.99e-96 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1081580 | G7KQZ2 | 93.817 | 372 | 10 | 1 | 1 | 359 | 1 | 372 | 0.0 | 712 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1081580 | TF | C2C2-CO-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1081580 | Msa1081670 | 0.809789 | 1.590941e-50 | -8.615850e-47 |
| Msa1081580 | Msa1082210 | 0.800552 | 1.365843e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1081580 | MtrunA17_Chr7g0268691 | 93.817 | 372 | 10 | 1 | 1 | 359 | 1 | 372 | 0.0 | 712 |
| Msa1081580 | MtrunA17_Chr3g0120711 | 50.000 | 100 | 50 | 0 | 20 | 119 | 5 | 104 | 8.26e-30 | 118 |
| Msa1081580 | MtrunA17_Chr3g0120711 | 62.500 | 48 | 18 | 0 | 309 | 356 | 348 | 395 | 7.18e-12 | 66.2 |
| Msa1081580 | MtrunA17_Chr7g0251781 | 45.255 | 137 | 57 | 4 | 19 | 148 | 4 | 129 | 3.95e-29 | 116 |
| Msa1081580 | MtrunA17_Chr7g0251781 | 68.889 | 45 | 14 | 0 | 312 | 356 | 338 | 382 | 1.05e-13 | 71.6 |
| Msa1081580 | MtrunA17_Chr5g0429341 | 48.515 | 101 | 51 | 1 | 20 | 119 | 5 | 105 | 5.08e-29 | 116 |
| Msa1081580 | MtrunA17_Chr2g0322941 | 45.000 | 100 | 54 | 1 | 20 | 119 | 44 | 142 | 9.04e-22 | 92.8 |
| Msa1081580 | MtrunA17_Chr1g0209071 | 37.736 | 106 | 64 | 1 | 18 | 123 | 3 | 106 | 1.78e-20 | 91.3 |
| Msa1081580 | MtrunA17_Chr7g0220721 | 36.283 | 113 | 64 | 3 | 18 | 126 | 24 | 132 | 1.16e-18 | 86.7 |
| Msa1081580 | MtrunA17_Chr1g0150471 | 40.698 | 86 | 50 | 1 | 20 | 104 | 6 | 91 | 5.06e-18 | 83.6 |
| Msa1081580 | MtrunA17_Chr1g0150471 | 45.455 | 66 | 34 | 1 | 291 | 356 | 233 | 296 | 2.13e-11 | 64.3 |
| Msa1081580 | MtrunA17_Chr3g0136701 | 40.449 | 89 | 52 | 1 | 20 | 107 | 6 | 94 | 1.01e-17 | 82.4 |
| Msa1081580 | MtrunA17_Chr4g0072871 | 40.449 | 89 | 52 | 1 | 20 | 107 | 22 | 110 | 1.04e-17 | 83.6 |
| Msa1081580 | MtrunA17_Chr4g0072871 | 42.647 | 68 | 39 | 0 | 289 | 356 | 272 | 339 | 7.54e-12 | 65.9 |
| Msa1081580 | MtrunA17_Chr4g0033641 | 43.478 | 92 | 42 | 2 | 20 | 101 | 5 | 96 | 9.50e-16 | 75.9 |
| Msa1081580 | MtrunA17_Chr1g0155811 | 35.354 | 99 | 53 | 2 | 20 | 107 | 5 | 103 | 1.05e-13 | 70.5 |
| Msa1081580 | MtrunA17_Chr5g0405151 | 38.750 | 80 | 41 | 1 | 20 | 91 | 5 | 84 | 2.15e-13 | 68.2 |
| Msa1081580 | MtrunA17_Chr2g0329511 | 39.796 | 98 | 49 | 2 | 20 | 107 | 5 | 102 | 2.99e-13 | 68.9 |
| Msa1081580 | MtrunA17_Chr2g0322951 | 63.636 | 44 | 16 | 0 | 313 | 356 | 90 | 133 | 6.09e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1081580 | AT2G47890.1 | 45.559 | 349 | 157 | 6 | 14 | 356 | 7 | 328 | 9.14e-97 | 291 |
| Msa1081580 | AT2G47890.3 | 42.105 | 323 | 154 | 6 | 14 | 330 | 7 | 302 | 1.37e-77 | 241 |
| Msa1081580 | AT2G47890.2 | 51.163 | 215 | 81 | 3 | 14 | 227 | 7 | 198 | 1.87e-71 | 223 |
| Msa1081580 | AT3G07650.3 | 30.563 | 373 | 202 | 14 | 20 | 356 | 5 | 356 | 2.68e-39 | 143 |
| Msa1081580 | AT3G07650.2 | 30.563 | 373 | 202 | 14 | 20 | 356 | 5 | 356 | 2.68e-39 | 143 |
| Msa1081580 | AT3G07650.4 | 30.563 | 373 | 202 | 14 | 20 | 356 | 5 | 356 | 2.68e-39 | 143 |
| Msa1081580 | AT3G07650.1 | 30.563 | 373 | 202 | 14 | 20 | 356 | 5 | 356 | 2.68e-39 | 143 |
| Msa1081580 | AT1G28050.1 | 36.735 | 196 | 100 | 6 | 19 | 209 | 8 | 184 | 4.74e-34 | 130 |
| Msa1081580 | AT1G28050.1 | 59.259 | 54 | 22 | 0 | 303 | 356 | 373 | 426 | 6.81e-13 | 69.7 |
| Msa1081580 | AT2G33500.2 | 51.351 | 111 | 53 | 1 | 19 | 128 | 11 | 121 | 1.35e-33 | 129 |
| Msa1081580 | AT2G33500.2 | 70.833 | 48 | 14 | 0 | 309 | 356 | 350 | 397 | 8.58e-15 | 75.5 |
| Msa1081580 | AT2G33500.1 | 51.351 | 111 | 53 | 1 | 19 | 128 | 11 | 121 | 1.44e-33 | 129 |
| Msa1081580 | AT2G33500.1 | 70.833 | 48 | 14 | 0 | 309 | 356 | 351 | 398 | 8.86e-15 | 75.5 |
| Msa1081580 | AT3G02380.1 | 27.901 | 362 | 196 | 7 | 11 | 356 | 7 | 319 | 2.81e-31 | 121 |
| Msa1081580 | AT5G48250.1 | 46.226 | 106 | 54 | 1 | 20 | 122 | 5 | 110 | 5.35e-29 | 115 |
| Msa1081580 | AT3G21880.3 | 47.423 | 97 | 50 | 1 | 20 | 116 | 9 | 104 | 5.06e-22 | 96.3 |
| Msa1081580 | AT3G21880.2 | 47.423 | 97 | 50 | 1 | 20 | 116 | 9 | 104 | 5.06e-22 | 96.3 |
| Msa1081580 | AT3G21880.1 | 47.423 | 97 | 50 | 1 | 20 | 116 | 5 | 100 | 5.71e-22 | 96.3 |
| Msa1081580 | AT1G68190.1 | 38.679 | 106 | 64 | 1 | 18 | 123 | 12 | 116 | 1.48e-20 | 92.0 |
| Msa1081580 | AT1G68190.3 | 38.679 | 106 | 64 | 1 | 18 | 123 | 12 | 116 | 1.48e-20 | 92.0 |
| Msa1081580 | AT1G68190.2 | 38.679 | 106 | 64 | 1 | 18 | 123 | 41 | 145 | 1.55e-20 | 92.4 |
| Msa1081580 | AT4G15250.1 | 42.000 | 100 | 57 | 1 | 20 | 119 | 5 | 103 | 1.63e-20 | 91.3 |
| Msa1081580 | AT5G15840.1 | 43.011 | 93 | 52 | 1 | 18 | 109 | 18 | 110 | 7.40e-20 | 90.1 |
| Msa1081580 | AT5G15840.2 | 43.011 | 93 | 52 | 1 | 18 | 109 | 18 | 110 | 1.81e-19 | 87.4 |
| Msa1081580 | AT5G15850.1 | 42.045 | 88 | 50 | 1 | 18 | 104 | 10 | 97 | 2.89e-18 | 85.5 |
| Msa1081580 | AT5G15850.1 | 45.000 | 80 | 36 | 2 | 285 | 356 | 248 | 327 | 4.46e-12 | 67.0 |
| Msa1081580 | AT5G24930.1 | 40.449 | 89 | 52 | 1 | 20 | 107 | 6 | 94 | 3.76e-18 | 85.1 |
| Msa1081580 | AT2G24790.1 | 39.560 | 91 | 54 | 1 | 18 | 107 | 6 | 96 | 3.93e-18 | 84.0 |
| Msa1081580 | AT2G24790.1 | 43.836 | 73 | 32 | 1 | 284 | 356 | 207 | 270 | 1.24e-11 | 65.1 |
| Msa1081580 | AT2G24790.2 | 39.560 | 91 | 54 | 1 | 18 | 107 | 6 | 96 | 5.54e-18 | 82.0 |
| Msa1081580 | AT5G57660.1 | 39.560 | 91 | 50 | 2 | 18 | 107 | 20 | 106 | 1.32e-17 | 83.6 |
| Msa1081580 | AT4G38960.1 | 40.000 | 80 | 40 | 1 | 20 | 91 | 5 | 84 | 7.41e-13 | 67.0 |
| Msa1081580 | AT4G38960.6 | 40.000 | 80 | 40 | 1 | 20 | 91 | 5 | 84 | 7.41e-13 | 67.0 |
| Msa1081580 | AT1G75540.1 | 35.000 | 100 | 52 | 2 | 20 | 106 | 5 | 104 | 2.64e-12 | 67.4 |
| Msa1081580 | AT2G21320.1 | 38.750 | 80 | 41 | 1 | 20 | 91 | 5 | 84 | 3.25e-12 | 64.7 |
| Msa1081580 | AT2G31380.1 | 36.170 | 94 | 51 | 1 | 20 | 104 | 5 | 98 | 1.37e-11 | 64.3 |
| Msa1081580 | AT1G06040.1 | 35.106 | 94 | 52 | 1 | 20 | 104 | 5 | 98 | 8.79e-11 | 62.0 |
Find 119 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATAGTCATAATATTTAT+TGG | 0.170312 | 7_2:+81399251 | None:intergenic |
| TATGACTATGTTTAGTTTAT+CGG | 0.196435 | 7_2:-81399240 | Msa1081580:three_prime_UTR |
| GGGTTAGGGTTAGGGTTTCT+AGG | 0.248419 | 7_2:+81402282 | None:intergenic |
| CAGTTTCTTATATTATATTA+TGG | 0.250584 | 7_2:-81399430 | Msa1081580:three_prime_UTR |
| GGCTTTCTGATATGTTTGTT+TGG | 0.257842 | 7_2:-81401852 | Msa1081580:CDS |
| TTGTGTGAAGGGTTAGGGTT+AGG | 0.274503 | 7_2:+81402273 | None:intergenic |
| CTAGCAAAATGCTTCCTTCT+TGG | 0.275651 | 7_2:+81399375 | None:intergenic |
| TTGGCATGTGACTCATTTCT+TGG | 0.308025 | 7_2:+81402410 | None:intergenic |
| ATCGCATGAATCACAGATTA+AGG | 0.318847 | 7_2:+81402116 | None:intergenic |
| ATTCTGGGTTTGCAGGATAT+TGG | 0.319782 | 7_2:-81401940 | Msa1081580:CDS |
| GGTATGAATCACGTAAAGTT+AGG | 0.323110 | 7_2:-81399880 | Msa1081580:CDS |
| ACATAGTCATAATATTTATT+GGG | 0.333100 | 7_2:+81399252 | None:intergenic |
| TCTTGACTTGCTAACTCATA+TGG | 0.335110 | 7_2:+81400452 | None:intergenic |
| GGTTAGGTGGAATGAGGATA+TGG | 0.336947 | 7_2:+81402362 | None:intergenic |
| ACAGATATGACAAGCATATA+AGG | 0.340161 | 7_2:-81399901 | Msa1081580:intron |
| AAAATTCTGTATCTTCTGTT+GGG | 0.344125 | 7_2:-81400565 | Msa1081580:CDS |
| AATAGTTTGTGTGAAGGGTT+AGG | 0.348641 | 7_2:+81402267 | None:intergenic |
| GCTTTCTGATATGTTTGTTT+GGG | 0.350633 | 7_2:-81401851 | Msa1081580:CDS |
| TGTGTGAAGGGTTAGGGTTA+GGG | 0.355224 | 7_2:+81402274 | None:intergenic |
| GAGAGTGGCAAAAGAGGATT+TGG | 0.355929 | 7_2:+81402391 | None:intergenic |
| TATATACTCTTCAGGATCAT+AGG | 0.367421 | 7_2:+81401063 | None:intergenic |
| GCTGGTGGTATATACTCTTC+AGG | 0.373274 | 7_2:+81401055 | None:intergenic |
| TATGGAGGAGGAACAGCTTT+AGG | 0.375711 | 7_2:+81400470 | None:intergenic |
| GCTCGGAAGGTGCTTATGTT+TGG | 0.379081 | 7_2:-81399314 | Msa1081580:three_prime_UTR |
| AGTGTAGGAGATGGGTTTGT+AGG | 0.384973 | 7_2:-81401889 | Msa1081580:CDS |
| GGAGAGCAGGACAAGAGTTA+AGG | 0.397226 | 7_2:-81399855 | Msa1081580:CDS |
| CTTAGAGAAGAGTTGATTTG+TGG | 0.405751 | 7_2:+81402149 | None:intergenic |
| AGAAGCTTTACCTCATTTGA+AGG | 0.408399 | 7_2:+81400986 | None:intergenic |
| TTTGTCGATTCTGGGTTTGC+AGG | 0.409347 | 7_2:-81401947 | Msa1081580:CDS |
| GTAGAACAGAGGATGGTTGC+AGG | 0.415286 | 7_2:+81402087 | None:intergenic |
| AGTTGTTGAAGTGAGGATAA+TGG | 0.415599 | 7_2:+81402445 | None:intergenic |
| AAACCTGTAGATAAATTTGC+TGG | 0.420931 | 7_2:+81401037 | None:intergenic |
| AAAGGGATTCTGCATTATTA+CGG | 0.421974 | 7_2:-81400430 | Msa1081580:CDS |
| AGTCATAATATTTATTGGGT+TGG | 0.422136 | 7_2:+81399256 | None:intergenic |
| AGAGAAAATGTGAGGAGAAA+AGG | 0.424988 | 7_2:+81402341 | None:intergenic |
| ATCACAAGAGAAACAGAGTT+TGG | 0.452673 | 7_2:+81402185 | None:intergenic |
| TTCTCATAATTATCGTGCTA+TGG | 0.457659 | 7_2:-81401779 | Msa1081580:CDS |
| GAGAGCAGGACAAGAGTTAA+GGG | 0.458882 | 7_2:-81399854 | Msa1081580:CDS |
| CCACCAGCAAATTTATCTAC+AGG | 0.458973 | 7_2:-81401040 | Msa1081580:CDS |
| CCATTGTTACAATGGGTATG+AGG | 0.466508 | 7_2:+81400539 | None:intergenic |
| AGTGCTCTATCTTCGCAAAT+CGG | 0.467718 | 7_2:+81399831 | None:intergenic |
| CTCGCACATTTATAAATCTC+AGG | 0.469570 | 7_2:+81399053 | None:intergenic |
| ATAGTTTGTGTGAAGGGTTA+GGG | 0.471313 | 7_2:+81402268 | None:intergenic |
| TTTGAAGAGAGTGGCAAAAG+AGG | 0.482855 | 7_2:+81402385 | None:intergenic |
| CATGAACGAAGGCCTCTTGA+GGG | 0.483331 | 7_2:-81402000 | Msa1081580:CDS |
| GTGTAGGAGATGGGTTTGTA+GGG | 0.494664 | 7_2:-81401888 | Msa1081580:CDS |
| TTTGTAGGGTATGAGATTGA+AGG | 0.495230 | 7_2:-81401874 | Msa1081580:CDS |
| AAATGTGAGGAGAAAAGGTT+AGG | 0.495302 | 7_2:+81402346 | None:intergenic |
| AAGATAGAGCACTGAAATCA+TGG | 0.495586 | 7_2:-81399821 | Msa1081580:intron |
| GCTTTGAATGATGTATCAAC+AGG | 0.496442 | 7_2:+81400611 | None:intergenic |
| GTATGAATCACGTAAAGTTA+GGG | 0.496671 | 7_2:-81399879 | Msa1081580:CDS |
| ATGAGTTAGCAAGTCAAGAA+AGG | 0.496861 | 7_2:-81400448 | Msa1081580:CDS |
| CATCCCTCCATTGTTACAAT+GGG | 0.498623 | 7_2:+81400532 | None:intergenic |
| TTCTGCTCCAAGTCTATCAT+AGG | 0.507427 | 7_2:+81399403 | None:intergenic |
| GTCGAAATAGTTTGTGTGAA+GGG | 0.509191 | 7_2:+81402262 | None:intergenic |
| GCACGATAATTATGAGAAGA+AGG | 0.510409 | 7_2:+81401784 | None:intergenic |
| CTCAGGAAAGTGTAGGAGAT+GGG | 0.521940 | 7_2:-81401897 | Msa1081580:CDS |
| TTGTAGGGTATGAGATTGAA+GGG | 0.521963 | 7_2:-81401873 | Msa1081580:CDS |
| ATATACTCTTCAGGATCATA+GGG | 0.522685 | 7_2:+81401064 | None:intergenic |
| TCATCAAGACTAACAAAAGA+AGG | 0.525975 | 7_2:+81401823 | None:intergenic |
| AGAAAAGGTTAGGTGGAATG+AGG | 0.531678 | 7_2:+81402356 | None:intergenic |
| TGAGTTAGCAAGTCAAGAAA+GGG | 0.532628 | 7_2:-81400447 | Msa1081580:CDS |
| GCATCCCTCCATTGTTACAA+TGG | 0.541331 | 7_2:+81400531 | None:intergenic |
| ACAGGAACAACTTGATACAT+AGG | 0.543198 | 7_2:+81400629 | None:intergenic |
| TCATGAACGAAGGCCTCTTG+AGG | 0.546653 | 7_2:-81402001 | Msa1081580:CDS |
| TGGAGCACCTATGATAGACT+TGG | 0.546989 | 7_2:-81399410 | Msa1081580:three_prime_UTR |
| CCTCAGGAAAGTGTAGGAGA+TGG | 0.550053 | 7_2:-81401898 | Msa1081580:CDS |
| AAAAGTGTAAACCCTTGGAT+TGG | 0.551178 | 7_2:-81399009 | Msa1081580:three_prime_UTR |
| GTTATTGAAACAGAATCGTA+AGG | 0.552534 | 7_2:-81401149 | Msa1081580:intron |
| GGAGGTTCCTCCTTTGCCCA+AGG | 0.554443 | 7_2:-81401758 | Msa1081580:intron |
| TTTCGACCTTGTGATTATTG+TGG | 0.554518 | 7_2:-81402246 | Msa1081580:CDS |
| CTCTTAAACCACACCATGGG+TGG | 0.560180 | 7_2:-81402309 | Msa1081580:exon |
| GTAAAGTTAGGGCGGAGAGC+AGG | 0.562929 | 7_2:-81399868 | Msa1081580:CDS |
| CAAGGAGTCATACTTCATCC+TGG | 0.565132 | 7_2:-81399290 | Msa1081580:three_prime_UTR |
| AGGATATGGTTTGAAGAGAG+TGG | 0.565322 | 7_2:+81402376 | None:intergenic |
| GAGAGATGAGAGAAAATGTG+AGG | 0.568388 | 7_2:+81402333 | None:intergenic |
| GTAAACCCTTGGATTGGTGT+TGG | 0.568779 | 7_2:-81399003 | Msa1081580:three_prime_UTR |
| TTGTTCTTGAAGCTGTAGCT+CGG | 0.571493 | 7_2:-81399331 | Msa1081580:three_prime_UTR |
| TCTTGAAGCTGTAGCTCGGA+AGG | 0.575105 | 7_2:-81399327 | Msa1081580:three_prime_UTR |
| GACAAAAGCTCAGTAACTGA+AGG | 0.575937 | 7_2:+81401964 | None:intergenic |
| ATGAATTATACCTTGGGCAA+AGG | 0.577881 | 7_2:+81401748 | None:intergenic |
| AATTATACCTTGGGCAAAGG+AGG | 0.579881 | 7_2:+81401751 | None:intergenic |
| AAATTCTGTATCTTCTGTTG+GGG | 0.580389 | 7_2:-81400564 | Msa1081580:CDS |
| CCTCATACCCATTGTAACAA+TGG | 0.581371 | 7_2:-81400539 | Msa1081580:CDS |
| GGTCGAAATAGTTTGTGTGA+AGG | 0.583503 | 7_2:+81402261 | None:intergenic |
| GCTCATCCAACACCAATCCA+AGG | 0.589626 | 7_2:+81398997 | None:intergenic |
| TGTGAGGAGAAAAGGTTAGG+TGG | 0.589856 | 7_2:+81402349 | None:intergenic |
| ATACCCATTGTAACAATGGA+GGG | 0.591880 | 7_2:-81400535 | Msa1081580:CDS |
| TAGGAGAACCACCCATGGTG+TGG | 0.595775 | 7_2:+81402301 | None:intergenic |
| TTGACAAAATCACAATGAGA+CGG | 0.598293 | 7_2:+81399148 | None:intergenic |
| TCATAATTATCGTGCTATGG+AGG | 0.601458 | 7_2:-81401776 | Msa1081580:CDS |
| CATGAGGTGAAGATAGTGAA+AGG | 0.604807 | 7_2:+81402019 | None:intergenic |
| CTTGCTAACTCATATGGAGG+AGG | 0.605681 | 7_2:+81400458 | None:intergenic |
| CATACCCATTGTAACAATGG+AGG | 0.607055 | 7_2:-81400536 | Msa1081580:CDS |
| TGATATCGTTCCTTCAAATG+AGG | 0.607517 | 7_2:-81400996 | Msa1081580:intron |
| AGCAAAAGAAGAAAACAAGA+AGG | 0.608996 | 7_2:-81400403 | Msa1081580:intron |
| GGATTCTGTAGAACAGAGGA+TGG | 0.611049 | 7_2:+81402080 | None:intergenic |
| TCAAGAGGCCTTCGTTCATG+AGG | 0.621272 | 7_2:+81402003 | None:intergenic |
| CAGAATCGTAAGGCTGCTTG+TGG | 0.621356 | 7_2:-81401139 | Msa1081580:CDS |
| TTTCTGTCAAAACTGTGACT+GGG | 0.626975 | 7_2:-81402052 | Msa1081580:CDS |
| CTCATCCAACACCAATCCAA+GGG | 0.628310 | 7_2:+81398998 | None:intergenic |
| GGGTTGGAAAATAGAAAACC+AGG | 0.631543 | 7_2:+81399272 | None:intergenic |
| AAGGTGCTTATGTTTGGACA+AGG | 0.636395 | 7_2:-81399308 | Msa1081580:three_prime_UTR |
| AGCTTTAGGAGTAGTTGACA+AGG | 0.637261 | 7_2:+81400484 | None:intergenic |
| AAGCACAAGTTGTTGAAGTG+AGG | 0.641309 | 7_2:+81402438 | None:intergenic |
| GGAGCAGAAGTACACCAAGA+AGG | 0.641992 | 7_2:-81399389 | Msa1081580:three_prime_UTR |
| TCAGACTTGAGAGATTCTGA+AGG | 0.642551 | 7_2:+81400509 | None:intergenic |
| CACCCTGTAAAACCCTCAAG+AGG | 0.645981 | 7_2:+81401988 | None:intergenic |
| ACAAAAGCTCAGTAACTGAA+GGG | 0.647464 | 7_2:+81401965 | None:intergenic |
| CCTGTAGATAAATTTGCTGG+TGG | 0.648332 | 7_2:+81401040 | None:intergenic |
| TCTCTCTTAAACCACACCAT+GGG | 0.649084 | 7_2:-81402312 | Msa1081580:exon |
| TGACTTGCTAACTCATATGG+AGG | 0.661886 | 7_2:+81400455 | None:intergenic |
| CTCTCTCTTAAACCACACCA+TGG | 0.664941 | 7_2:-81402313 | Msa1081580:exon |
| TGAATCACGTAAAGTTAGGG+CGG | 0.677942 | 7_2:-81399876 | Msa1081580:CDS |
| CAGAGGATTCTGTAGAACAG+AGG | 0.679902 | 7_2:+81402076 | None:intergenic |
| GAATTGCCACAATAATCACA+AGG | 0.683272 | 7_2:+81402240 | None:intergenic |
| CCATCTCCTACACTTTCCTG+AGG | 0.685251 | 7_2:+81401898 | None:intergenic |
| TATCTTCACCTCATGAACGA+AGG | 0.697940 | 7_2:-81402011 | Msa1081580:CDS |
| GTTTCTAGGAGAACCACCCA+TGG | 0.721828 | 7_2:+81402296 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGGATTTTTTTGTTTT+TGG | - | chr7_2:81399998-81400017 | Msa1081580:intron | 15.0% |
| !!! | ATTTTTAAGAGAAATTTCTT+CGG | + | chr7_2:81400866-81400885 | None:intergenic | 15.0% |
| !! | CTCAAATAAAATATATCAAA+AGG | + | chr7_2:81401249-81401268 | None:intergenic | 15.0% |
| !! | CATAATATAATATAAGAAAC+TGG | + | chr7_2:81402018-81402037 | None:intergenic | 15.0% |
| !! | CAGTTTCTTATATTATATTA+TGG | - | chr7_2:81402016-81402035 | Msa1081580:CDS | 15.0% |
| !! | ACATAGTCATAATATTTATT+GGG | + | chr7_2:81402197-81402216 | None:intergenic | 15.0% |
| !! | AACATAGTCATAATATTTAT+TGG | + | chr7_2:81402198-81402217 | None:intergenic | 15.0% |
| !!! | ATTTTGTCAAAATATGTATT+TGG | - | chr7_2:81402261-81402280 | Msa1081580:CDS | 15.0% |
| !!! | TTTTGTCAAAATATGTATTT+GGG | - | chr7_2:81402262-81402281 | Msa1081580:CDS | 15.0% |
| !!! | GAAATTCATTTTGTCTTTTT+AGG | - | chr7_2:81399818-81399837 | Msa1081580:intron | 20.0% |
| !!! | GAAATTCATTTTGTCTTTTT+AGG | - | chr7_2:81399818-81399837 | Msa1081580:intron | 20.0% |
| !!! | TGAAAACATGATTAGTTTTT+TGG | - | chr7_2:81399982-81400001 | Msa1081580:intron | 20.0% |
| !!! | ATTTTTTTGTTTTTGGATTC+TGG | - | chr7_2:81400005-81400024 | Msa1081580:intron | 20.0% |
| !!! | ATTTTATTTGAGAGATATCA+AGG | - | chr7_2:81401257-81401276 | Msa1081580:intron | 20.0% |
| !!! | TTTTATTTGAGAGATATCAA+GGG | - | chr7_2:81401258-81401277 | Msa1081580:intron | 20.0% |
| !!! | TGCAATTTTTAAATGATTGT+TGG | - | chr7_2:81401428-81401447 | Msa1081580:intron | 20.0% |
| !!! | TGTTTTTCATGTAAATACAT+GGG | + | chr7_2:81401525-81401544 | None:intergenic | 20.0% |
| !!! | TTGTTTTTCATGTAAATACA+TGG | + | chr7_2:81401526-81401545 | None:intergenic | 20.0% |
| !!! | TATGACTATGTTTAGTTTAT+CGG | - | chr7_2:81402206-81402225 | Msa1081580:CDS | 20.0% |
| ! | TTATCCATGAATTATACCTT+GGG | + | chr7_2:81399707-81399726 | None:intergenic | 25.0% |
| ! | ATTATCCATGAATTATACCT+TGG | + | chr7_2:81399708-81399727 | None:intergenic | 25.0% |
| ! | ATATTGGCATATCCAAATAA+GGG | + | chr7_2:81399781-81399800 | None:intergenic | 25.0% |
| ! | TATATTGGCATATCCAAATA+AGG | + | chr7_2:81399782-81399801 | None:intergenic | 25.0% |
| !!! | TGTTTTAATTCTCTGATTCT+TGG | - | chr7_2:81400081-81400100 | Msa1081580:intron | 25.0% |
| !!! | GTTTTAATTCTCTGATTCTT+GGG | - | chr7_2:81400082-81400101 | Msa1081580:intron | 25.0% |
| !!! | TTTTAATTCTCTGATTCTTG+GGG | - | chr7_2:81400083-81400102 | Msa1081580:intron | 25.0% |
| !! | TCAAAGGATGTTTTCATTTA+TGG | - | chr7_2:81400156-81400175 | Msa1081580:intron | 25.0% |
| !! | TTTCATTTATGGATTGAACT+CGG | - | chr7_2:81400167-81400186 | Msa1081580:intron | 25.0% |
| ! | AAAACAAGAAATCCATTATC+AGG | + | chr7_2:81400526-81400545 | None:intergenic | 25.0% |
| ! | AAAAGAGGGAAAAATAAACA+AGG | + | chr7_2:81400575-81400594 | None:intergenic | 25.0% |
| !! | TTATCAAAAAGTGTGAAGAT+AGG | + | chr7_2:81400607-81400626 | None:intergenic | 25.0% |
| ! | AAAAATTCTGTATCTTCTGT+TGG | - | chr7_2:81400880-81400899 | Msa1081580:intron | 25.0% |
| ! | AAAATTCTGTATCTTCTGTT+GGG | - | chr7_2:81400881-81400900 | Msa1081580:intron | 25.0% |
| ! | TTTATTTGAGAGATATCAAG+GGG | - | chr7_2:81401259-81401278 | Msa1081580:intron | 25.0% |
| ! | AAATTGAAGAAGTTCAATGT+AGG | - | chr7_2:81401320-81401339 | Msa1081580:intron | 25.0% |
| !! | GTTTTTCATGTAAATACATG+GGG | + | chr7_2:81401524-81401543 | None:intergenic | 25.0% |
| ! | AACAACTTAACGAAAATTCT+TGG | - | chr7_2:81401659-81401678 | Msa1081580:intron | 25.0% |
| ! | ATAAGTTCACTATACAACAA+GGG | + | chr7_2:81401713-81401732 | None:intergenic | 25.0% |
| ! | AATAAGTTCACTATACAACA+AGG | + | chr7_2:81401714-81401733 | None:intergenic | 25.0% |
| ! | AGTCATAATATTTATTGGGT+TGG | + | chr7_2:81402193-81402212 | None:intergenic | 25.0% |
| !!! | TCTAGAACTACAATTTTACA+TGG | + | chr7_2:81402369-81402388 | None:intergenic | 25.0% |
| !!! | TACACTTTTTCTTCTCTTTT+TGG | + | chr7_2:81402426-81402445 | None:intergenic | 25.0% |
| GCTTTCTGATATGTTTGTTT+GGG | - | chr7_2:81399595-81399614 | Msa1081580:intron | 30.0% | |
| TCATCAAGACTAACAAAAGA+AGG | + | chr7_2:81399626-81399645 | None:intergenic | 30.0% | |
| TTCTCATAATTATCGTGCTA+TGG | - | chr7_2:81399667-81399686 | Msa1081580:intron | 30.0% | |
| ! | TTTTTATTCTGCCCCTTATT+TGG | - | chr7_2:81399766-81399785 | Msa1081580:intron | 30.0% |
| TATTGGCATATCCAAATAAG+GGG | + | chr7_2:81399780-81399799 | None:intergenic | 30.0% | |
| TTTATTCTGTGTGCTCAAAA+GGG | - | chr7_2:81399895-81399914 | Msa1081580:CDS | 30.0% | |
| ! | TCAGGTCTTGATTTTAAACT+AGG | - | chr7_2:81399931-81399950 | Msa1081580:intron | 30.0% |
| ! | TGATTTTAAACTAGGCATGA+TGG | - | chr7_2:81399939-81399958 | Msa1081580:intron | 30.0% |
| ! | GATTTTAAACTAGGCATGAT+GGG | - | chr7_2:81399940-81399959 | Msa1081580:intron | 30.0% |
| ! | TTTTTGGATTCTGGATTGTT+TGG | - | chr7_2:81400014-81400033 | Msa1081580:intron | 30.0% |
| TTTAATTCTCTGATTCTTGG+GGG | - | chr7_2:81400084-81400103 | Msa1081580:intron | 30.0% | |
| ! | ACCCTAAGTAATTTGGAATT+CGG | - | chr7_2:81400112-81400131 | Msa1081580:intron | 30.0% |
| !! | GGCTTTAAGTAAATAATGTC+TGG | - | chr7_2:81400133-81400152 | Msa1081580:intron | 30.0% |
| AGTAAATAATGTCTGGTCAA+AGG | - | chr7_2:81400140-81400159 | Msa1081580:intron | 30.0% | |
| ! | TTCATTTATGGATTGAACTC+GGG | - | chr7_2:81400168-81400187 | Msa1081580:intron | 30.0% |
| ! | TTCAATTTGTTCAACTCAAG+TGG | + | chr7_2:81400233-81400252 | None:intergenic | 30.0% |
| GTTATTGAAACAGAATCGTA+AGG | - | chr7_2:81400297-81400316 | Msa1081580:intron | 30.0% | |
| ATATACTCTTCAGGATCATA+GGG | + | chr7_2:81400385-81400404 | None:intergenic | 30.0% | |
| TATATACTCTTCAGGATCAT+AGG | + | chr7_2:81400386-81400405 | None:intergenic | 30.0% | |
| AAACCTGTAGATAAATTTGC+TGG | + | chr7_2:81400412-81400431 | None:intergenic | 30.0% | |
| AATAAACAAGGTGCATTACA+AGG | + | chr7_2:81400563-81400582 | None:intergenic | 30.0% | |
| ATAGGAGCAAACAAAAAAGA+GGG | + | chr7_2:81400589-81400608 | None:intergenic | 30.0% | |
| !! | TTTGATAAACGAACTTGCTA+TGG | - | chr7_2:81400619-81400638 | Msa1081580:CDS | 30.0% |
| AAATTAGAATAACAACCACC+TGG | + | chr7_2:81400718-81400737 | None:intergenic | 30.0% | |
| AAATTCTGTATCTTCTGTTG+GGG | - | chr7_2:81400882-81400901 | Msa1081580:intron | 30.0% | |
| AAAGGGATTCTGCATTATTA+CGG | - | chr7_2:81401016-81401035 | Msa1081580:CDS | 30.0% | |
| AGCAAAAGAAGAAAACAAGA+AGG | - | chr7_2:81401043-81401062 | Msa1081580:CDS | 30.0% | |
| TAAGAAAAAATACTCGACTC+TGG | + | chr7_2:81401165-81401184 | None:intergenic | 30.0% | |
| GTGATCAAACCATATTACTT+GGG | + | chr7_2:81401205-81401224 | None:intergenic | 30.0% | |
| AGTGATCAAACCATATTACT+TGG | + | chr7_2:81401206-81401225 | None:intergenic | 30.0% | |
| AAGTAATATGGTTTGATCAC+TGG | - | chr7_2:81401205-81401224 | Msa1081580:intron | 30.0% | |
| ! | TGATCACTGGATATTTTCAT+TGG | - | chr7_2:81401218-81401237 | Msa1081580:intron | 30.0% |
| ACAGATATGACAAGCATATA+AGG | - | chr7_2:81401545-81401564 | Msa1081580:intron | 30.0% | |
| GTATGAATCACGTAAAGTTA+GGG | - | chr7_2:81401567-81401586 | Msa1081580:intron | 30.0% | |
| ACTTTATGCTCTGATATAGA+TGG | - | chr7_2:81401860-81401879 | Msa1081580:CDS | 30.0% | |
| !!! | TAACTGTTGTAGTTTTAGCT+GGG | - | chr7_2:81401931-81401950 | Msa1081580:CDS | 30.0% |
| TTGACAAAATCACAATGAGA+CGG | + | chr7_2:81402301-81402320 | None:intergenic | 30.0% | |
| AGTTGTTGAAGTGAGGATAA+TGG | + | chr7_2:81399004-81399023 | None:intergenic | 35.0% | |
| AAATGTGAGGAGAAAAGGTT+AGG | + | chr7_2:81399103-81399122 | None:intergenic | 35.0% | |
| AGAGAAAATGTGAGGAGAAA+AGG | + | chr7_2:81399108-81399127 | None:intergenic | 35.0% | |
| ! | ATAGTTTGTGTGAAGGGTTA+GGG | + | chr7_2:81399181-81399200 | None:intergenic | 35.0% |
| ! | AATAGTTTGTGTGAAGGGTT+AGG | + | chr7_2:81399182-81399201 | None:intergenic | 35.0% |
| ! | GTCGAAATAGTTTGTGTGAA+GGG | + | chr7_2:81399187-81399206 | None:intergenic | 35.0% |
| TTTCGACCTTGTGATTATTG+TGG | - | chr7_2:81399200-81399219 | Msa1081580:three_prime_UTR | 35.0% | |
| GAATTGCCACAATAATCACA+AGG | + | chr7_2:81399209-81399228 | None:intergenic | 35.0% | |
| ATCACAAGAGAAACAGAGTT+TGG | + | chr7_2:81399264-81399283 | None:intergenic | 35.0% | |
| !! | CTTAGAGAAGAGTTGATTTG+TGG | + | chr7_2:81399300-81399319 | None:intergenic | 35.0% |
| ATCGCATGAATCACAGATTA+AGG | + | chr7_2:81399333-81399352 | None:intergenic | 35.0% | |
| !! | ACAGTTTTGACAGAAAACAG+AGG | + | chr7_2:81399390-81399409 | None:intergenic | 35.0% |
| ! | TTTTCTGTCAAAACTGTGAC+TGG | - | chr7_2:81399393-81399412 | Msa1081580:three_prime_UTR | 35.0% |
| TTTCTGTCAAAACTGTGACT+GGG | - | chr7_2:81399394-81399413 | Msa1081580:three_prime_UTR | 35.0% | |
| ACAAAAGCTCAGTAACTGAA+GGG | + | chr7_2:81399484-81399503 | None:intergenic | 35.0% | |
| !! | AAAATCTTTGCTTTTGCCTC+AGG | - | chr7_2:81399532-81399551 | Msa1081580:intron | 35.0% |
| TTTGTAGGGTATGAGATTGA+AGG | - | chr7_2:81399572-81399591 | Msa1081580:intron | 35.0% | |
| TTGTAGGGTATGAGATTGAA+GGG | - | chr7_2:81399573-81399592 | Msa1081580:intron | 35.0% | |
| GGCTTTCTGATATGTTTGTT+TGG | - | chr7_2:81399594-81399613 | Msa1081580:intron | 35.0% | |
| GCACGATAATTATGAGAAGA+AGG | + | chr7_2:81399665-81399684 | None:intergenic | 35.0% | |
| TCATAATTATCGTGCTATGG+AGG | - | chr7_2:81399670-81399689 | Msa1081580:intron | 35.0% | |
| ATGAATTATACCTTGGGCAA+AGG | + | chr7_2:81399701-81399720 | None:intergenic | 35.0% | |
| TTTGCCCAAGGTATAATTCA+TGG | - | chr7_2:81399700-81399719 | Msa1081580:intron | 35.0% | |
| GTTTATTCTGTGTGCTCAAA+AGG | - | chr7_2:81399894-81399913 | Msa1081580:CDS | 35.0% | |
| AAGGGATTCTTTCTTTGTTC+AGG | - | chr7_2:81399913-81399932 | Msa1081580:intron | 35.0% | |
| GGAAACAACCCTAAGTAATT+TGG | - | chr7_2:81400105-81400124 | Msa1081580:intron | 35.0% | |
| GCCGAATTCCAAATTACTTA+GGG | + | chr7_2:81400116-81400135 | None:intergenic | 35.0% | |
| AGCCGAATTCCAAATTACTT+AGG | + | chr7_2:81400117-81400136 | None:intergenic | 35.0% | |
| GTTCAACTCAAGTGGTAAAA+GGG | + | chr7_2:81400225-81400244 | None:intergenic | 35.0% | |
| TGTTCAACTCAAGTGGTAAA+AGG | + | chr7_2:81400226-81400245 | None:intergenic | 35.0% | |
| !! | GCTGCAATTTTAACATGTTC+TGG | - | chr7_2:81400267-81400286 | Msa1081580:intron | 35.0% |
| TGATATCGTTCCTTCAAATG+AGG | - | chr7_2:81400450-81400469 | Msa1081580:CDS | 35.0% | |
| AGAAGCTTTACCTCATTTGA+AGG | + | chr7_2:81400463-81400482 | None:intergenic | 35.0% | |
| GTGCATTACAAGGTTGAAAA+TGG | + | chr7_2:81400553-81400572 | None:intergenic | 35.0% | |
| GATAGGAGCAAACAAAAAAG+AGG | + | chr7_2:81400590-81400609 | None:intergenic | 35.0% | |
| TTATCAATAGTACCACAAGC+AGG | + | chr7_2:81400689-81400708 | None:intergenic | 35.0% | |
| TACTATTGATAAGATGAGCC+AGG | - | chr7_2:81400697-81400716 | Msa1081580:intron | 35.0% | |
| TAGTAATGTCGTCATTTCAG+TGG | - | chr7_2:81400776-81400795 | Msa1081580:intron | 35.0% | |
| ACAGGAACAACTTGATACAT+AGG | + | chr7_2:81400820-81400839 | None:intergenic | 35.0% | |
| ! | GCTTTGAATGATGTATCAAC+AGG | + | chr7_2:81400838-81400857 | None:intergenic | 35.0% |
| ATACCCATTGTAACAATGGA+GGG | - | chr7_2:81400911-81400930 | Msa1081580:intron | 35.0% | |
| !! | TCTTGACTTGCTAACTCATA+TGG | + | chr7_2:81400997-81401016 | None:intergenic | 35.0% |
| ATGAGTTAGCAAGTCAAGAA+AGG | - | chr7_2:81400998-81401017 | Msa1081580:CDS | 35.0% | |
| TGAGTTAGCAAGTCAAGAAA+GGG | - | chr7_2:81400999-81401018 | Msa1081580:CDS | 35.0% | |
| !!! | TGAAGTTTTGAGTTCAGATC+TGG | + | chr7_2:81401084-81401103 | None:intergenic | 35.0% |
| ATGATGACTCCCAAGTAATA+TGG | - | chr7_2:81401193-81401212 | Msa1081580:intron | 35.0% | |
| ! | GCAGCATAGTTTTCTCAATT+TGG | - | chr7_2:81401296-81401315 | Msa1081580:intron | 35.0% |
| CAATTCACAGTAAATGGAAC+AGG | + | chr7_2:81401374-81401393 | None:intergenic | 35.0% | |
| GTTCCATTTACTGTGAATTG+TGG | - | chr7_2:81401374-81401393 | Msa1081580:intron | 35.0% | |
| GAACCACAATTCACAGTAAA+TGG | + | chr7_2:81401380-81401399 | None:intergenic | 35.0% | |
| ! | TGTGGTTCTGTAATTGATCA+TGG | - | chr7_2:81401392-81401411 | Msa1081580:intron | 35.0% |
| TTTCATGTAAATACATGGGG+TGG | + | chr7_2:81401521-81401540 | None:intergenic | 35.0% | |
| GGTATGAATCACGTAAAGTT+AGG | - | chr7_2:81401566-81401585 | Msa1081580:intron | 35.0% | |
| !! | AAGATAGAGCACTGAAATCA+TGG | - | chr7_2:81401625-81401644 | Msa1081580:intron | 35.0% |
| TGTATGATGTTGTGTATCCT+TGG | - | chr7_2:81401750-81401769 | Msa1081580:intron | 35.0% | |
| !!! | GTTATCAGATTTGTTTTGCC+TGG | - | chr7_2:81401827-81401846 | Msa1081580:CDS | 35.0% |
| !! | CATAAAGTTGTTGATTTGCC+AGG | + | chr7_2:81401848-81401867 | None:intergenic | 35.0% |
| !!! | CTAACTGTTGTAGTTTTAGC+TGG | - | chr7_2:81401930-81401949 | Msa1081580:CDS | 35.0% |
| !!! | AACTGTTGTAGTTTTAGCTG+GGG | - | chr7_2:81401932-81401951 | Msa1081580:CDS | 35.0% |
| CTCGCACATTTATAAATCTC+AGG | + | chr7_2:81402396-81402415 | None:intergenic | 35.0% | |
| ! | GAAGAAAAAGTGTAAACCCT+TGG | - | chr7_2:81402432-81402451 | Msa1081580:five_prime_UTR | 35.0% |
| ! | AAAAGTGTAAACCCTTGGAT+TGG | - | chr7_2:81402437-81402456 | Msa1081580:five_prime_UTR | 35.0% |
| AAGCACAAGTTGTTGAAGTG+AGG | + | chr7_2:81399011-81399030 | None:intergenic | 40.0% | |
| TTGGCATGTGACTCATTTCT+TGG | + | chr7_2:81399039-81399058 | None:intergenic | 40.0% | |
| TTTGAAGAGAGTGGCAAAAG+AGG | + | chr7_2:81399064-81399083 | None:intergenic | 40.0% | |
| AGGATATGGTTTGAAGAGAG+TGG | + | chr7_2:81399073-81399092 | None:intergenic | 40.0% | |
| AGAAAAGGTTAGGTGGAATG+AGG | + | chr7_2:81399093-81399112 | None:intergenic | 40.0% | |
| GAGAGATGAGAGAAAATGTG+AGG | + | chr7_2:81399116-81399135 | None:intergenic | 40.0% | |
| TCTCTCTTAAACCACACCAT+GGG | - | chr7_2:81399134-81399153 | Msa1081580:three_prime_UTR | 40.0% | |
| ! | GGTCGAAATAGTTTGTGTGA+AGG | + | chr7_2:81399188-81399207 | None:intergenic | 40.0% |
| CATGAGGTGAAGATAGTGAA+AGG | + | chr7_2:81399430-81399449 | None:intergenic | 40.0% | |
| TATCTTCACCTCATGAACGA+AGG | - | chr7_2:81399435-81399454 | Msa1081580:intron | 40.0% | |
| GACAAAAGCTCAGTAACTGA+AGG | + | chr7_2:81399485-81399504 | None:intergenic | 40.0% | |
| !!! | TACTGAGCTTTTGTCGATTC+TGG | - | chr7_2:81399490-81399509 | Msa1081580:intron | 40.0% |
| !!! | ACTGAGCTTTTGTCGATTCT+GGG | - | chr7_2:81399491-81399510 | Msa1081580:intron | 40.0% |
| ATTCTGGGTTTGCAGGATAT+TGG | - | chr7_2:81399506-81399525 | Msa1081580:intron | 40.0% | |
| AATTATACCTTGGGCAAAGG+AGG | + | chr7_2:81399698-81399717 | None:intergenic | 40.0% | |
| TTGGATTCTGGATTGTTTGG+AGG | - | chr7_2:81400017-81400036 | Msa1081580:intron | 40.0% | |
| !! | CCTGTAGATAAATTTGCTGG+TGG | + | chr7_2:81400409-81400428 | None:intergenic | 40.0% |
| CCACCAGCAAATTTATCTAC+AGG | - | chr7_2:81400406-81400425 | Msa1081580:CDS | 40.0% | |
| !!! | AGGTTTTGATTGCGACGTAA+AGG | - | chr7_2:81400426-81400445 | Msa1081580:CDS | 40.0% |
| TCAATCCTCGTTCCTGATAA+TGG | - | chr7_2:81400511-81400530 | Msa1081580:CDS | 40.0% | |
| GAAATCCATTATCAGGAACG+AGG | + | chr7_2:81400519-81400538 | None:intergenic | 40.0% | |
| TATTGATAAGATGAGCCAGG+TGG | - | chr7_2:81400700-81400719 | Msa1081580:intron | 40.0% | |
| CCATTGTTACAATGGGTATG+AGG | + | chr7_2:81400910-81400929 | None:intergenic | 40.0% | |
| CCTCATACCCATTGTAACAA+TGG | - | chr7_2:81400907-81400926 | Msa1081580:intron | 40.0% | |
| CATACCCATTGTAACAATGG+AGG | - | chr7_2:81400910-81400929 | Msa1081580:intron | 40.0% | |
| CATCCCTCCATTGTTACAAT+GGG | + | chr7_2:81400917-81400936 | None:intergenic | 40.0% | |
| TCAGACTTGAGAGATTCTGA+AGG | + | chr7_2:81400940-81400959 | None:intergenic | 40.0% | |
| !! | AGCTTTAGGAGTAGTTGACA+AGG | + | chr7_2:81400965-81400984 | None:intergenic | 40.0% |
| !! | TGACTTGCTAACTCATATGG+AGG | + | chr7_2:81400994-81401013 | None:intergenic | 40.0% |
| GGATTGTTGATCAATGAGCT+AGG | - | chr7_2:81401449-81401468 | Msa1081580:intron | 40.0% | |
| TGAATCACGTAAAGTTAGGG+CGG | - | chr7_2:81401570-81401589 | Msa1081580:intron | 40.0% | |
| AGTGCTCTATCTTCGCAAAT+CGG | + | chr7_2:81401618-81401637 | None:intergenic | 40.0% | |
| !! | TAGAGCACTGAAATCATGGT+AGG | - | chr7_2:81401629-81401648 | Msa1081580:intron | 40.0% |
| ACTGCATACTATCAAAGCTC+TGG | + | chr7_2:81401778-81401797 | None:intergenic | 40.0% | |
| GCAGTCAAATTGACGCAATA+CGG | - | chr7_2:81401793-81401812 | Msa1081580:CDS | 40.0% | |
| !!! | ACTGTTGTAGTTTTAGCTGG+GGG | - | chr7_2:81401933-81401952 | Msa1081580:CDS | 40.0% |
| GTAGTGTCCGTAAACTTACA+AGG | + | chr7_2:81401963-81401982 | None:intergenic | 40.0% | |
| TTCTGCTCCAAGTCTATCAT+AGG | + | chr7_2:81402046-81402065 | None:intergenic | 40.0% | |
| CTAGCAAAATGCTTCCTTCT+TGG | + | chr7_2:81402074-81402093 | None:intergenic | 40.0% | |
| TTGTTCTTGAAGCTGTAGCT+CGG | - | chr7_2:81402115-81402134 | Msa1081580:CDS | 40.0% | |
| ! | AAGGTGCTTATGTTTGGACA+AGG | - | chr7_2:81402138-81402157 | Msa1081580:CDS | 40.0% |
| GGGTTGGAAAATAGAAAACC+AGG | + | chr7_2:81402177-81402196 | None:intergenic | 40.0% | |
| GAGAGTGGCAAAAGAGGATT+TGG | + | chr7_2:81399058-81399077 | None:intergenic | 45.0% | |
| GGTTAGGTGGAATGAGGATA+TGG | + | chr7_2:81399087-81399106 | None:intergenic | 45.0% | |
| TGTGAGGAGAAAAGGTTAGG+TGG | + | chr7_2:81399100-81399119 | None:intergenic | 45.0% | |
| CTCTCTCTTAAACCACACCA+TGG | - | chr7_2:81399133-81399152 | Msa1081580:three_prime_UTR | 45.0% | |
| TGTGTGAAGGGTTAGGGTTA+GGG | + | chr7_2:81399175-81399194 | None:intergenic | 45.0% | |
| TTGTGTGAAGGGTTAGGGTT+AGG | + | chr7_2:81399176-81399195 | None:intergenic | 45.0% | |
| GGATTCTGTAGAACAGAGGA+TGG | + | chr7_2:81399369-81399388 | None:intergenic | 45.0% | |
| CAGAGGATTCTGTAGAACAG+AGG | + | chr7_2:81399373-81399392 | None:intergenic | 45.0% | |
| !! | TTTGTCGATTCTGGGTTTGC+AGG | - | chr7_2:81399499-81399518 | Msa1081580:intron | 45.0% |
| !! | CTTTTGCCTCAGGAAAGTGT+AGG | - | chr7_2:81399542-81399561 | Msa1081580:intron | 45.0% |
| ! | CTCAGGAAAGTGTAGGAGAT+GGG | - | chr7_2:81399549-81399568 | Msa1081580:intron | 45.0% |
| ! | AGTGTAGGAGATGGGTTTGT+AGG | - | chr7_2:81399557-81399576 | Msa1081580:intron | 45.0% |
| ! | GTGTAGGAGATGGGTTTGTA+GGG | - | chr7_2:81399558-81399577 | Msa1081580:intron | 45.0% |
| GCTGGTGGTATATACTCTTC+AGG | + | chr7_2:81400394-81400413 | None:intergenic | 45.0% | |
| GCATCCCTCCATTGTTACAA+TGG | + | chr7_2:81400918-81400937 | None:intergenic | 45.0% | |
| TATGGAGGAGGAACAGCTTT+AGG | + | chr7_2:81400979-81400998 | None:intergenic | 45.0% | |
| CTTGCTAACTCATATGGAGG+AGG | + | chr7_2:81400991-81401010 | None:intergenic | 45.0% | |
| GAGAGCAGGACAAGAGTTAA+GGG | - | chr7_2:81401592-81401611 | Msa1081580:intron | 45.0% | |
| !! | CTATCAAAGCTCTGGATCCA+AGG | + | chr7_2:81401770-81401789 | None:intergenic | 45.0% |
| !!! | CTGTTGTAGTTTTAGCTGGG+GGG | - | chr7_2:81401934-81401953 | Msa1081580:CDS | 45.0% |
| !!! | TGTTGTAGTTTTAGCTGGGG+GGG | - | chr7_2:81401935-81401954 | Msa1081580:CDS | 45.0% |
| GGGGGATCCTTGTAAGTTTA+CGG | - | chr7_2:81401953-81401972 | Msa1081580:CDS | 45.0% | |
| ! | TGGAGCACCTATGATAGACT+TGG | - | chr7_2:81402036-81402055 | Msa1081580:CDS | 45.0% |
| CAAGGAGTCATACTTCATCC+TGG | - | chr7_2:81402156-81402175 | Msa1081580:CDS | 45.0% | |
| !! | GTAAACCCTTGGATTGGTGT+TGG | - | chr7_2:81402443-81402462 | Msa1081580:five_prime_UTR | 45.0% |
| CTCATCCAACACCAATCCAA+GGG | + | chr7_2:81402451-81402470 | None:intergenic | 45.0% | |
| !! | ATTACATAATTTAAATATAT+TGG | + | chr7_2:81399797-81399816 | None:intergenic | 5.0% |
| CTCTTAAACCACACCATGGG+TGG | - | chr7_2:81399137-81399156 | Msa1081580:three_prime_UTR | 50.0% | |
| ! | GTTTCTAGGAGAACCACCCA+TGG | + | chr7_2:81399153-81399172 | None:intergenic | 50.0% |
| GGGTTAGGGTTAGGGTTTCT+AGG | + | chr7_2:81399167-81399186 | None:intergenic | 50.0% | |
| GTAGAACAGAGGATGGTTGC+AGG | + | chr7_2:81399362-81399381 | None:intergenic | 50.0% | |
| TCAAGAGGCCTTCGTTCATG+AGG | + | chr7_2:81399446-81399465 | None:intergenic | 50.0% | |
| TCATGAACGAAGGCCTCTTG+AGG | - | chr7_2:81399445-81399464 | Msa1081580:intron | 50.0% | |
| CATGAACGAAGGCCTCTTGA+GGG | - | chr7_2:81399446-81399465 | Msa1081580:intron | 50.0% | |
| ! | AGGCCTCTTGAGGGTTTTAC+AGG | - | chr7_2:81399455-81399474 | Msa1081580:intron | 50.0% |
| ! | GGCCTCTTGAGGGTTTTACA+GGG | - | chr7_2:81399456-81399475 | Msa1081580:intron | 50.0% |
| CACCCTGTAAAACCCTCAAG+AGG | + | chr7_2:81399461-81399480 | None:intergenic | 50.0% | |
| CCATCTCCTACACTTTCCTG+AGG | + | chr7_2:81399551-81399570 | None:intergenic | 50.0% | |
| ! | CCTCAGGAAAGTGTAGGAGA+TGG | - | chr7_2:81399548-81399567 | Msa1081580:intron | 50.0% |
| CAGAATCGTAAGGCTGCTTG+TGG | - | chr7_2:81400307-81400326 | Msa1081580:intron | 50.0% | |
| TCAATCCTCGTTCCTGCTTG+TGG | - | chr7_2:81400674-81400693 | Msa1081580:intron | 50.0% | |
| TAGTACCACAAGCAGGAACG+AGG | + | chr7_2:81400682-81400701 | None:intergenic | 50.0% | |
| GGAGAGCAGGACAAGAGTTA+AGG | - | chr7_2:81401591-81401610 | Msa1081580:intron | 50.0% | |
| ! | GGAGCAGAAGTACACCAAGA+AGG | - | chr7_2:81402057-81402076 | Msa1081580:CDS | 50.0% |
| TCTTGAAGCTGTAGCTCGGA+AGG | - | chr7_2:81402119-81402138 | Msa1081580:CDS | 50.0% | |
| !! | GCTCGGAAGGTGCTTATGTT+TGG | - | chr7_2:81402132-81402151 | Msa1081580:CDS | 50.0% |
| GCTCATCCAACACCAATCCA+AGG | + | chr7_2:81402452-81402471 | None:intergenic | 50.0% | |
| TAGGAGAACCACCCATGGTG+TGG | + | chr7_2:81399148-81399167 | None:intergenic | 55.0% | |
| GTAAAGTTAGGGCGGAGAGC+AGG | - | chr7_2:81401578-81401597 | Msa1081580:intron | 55.0% | |
| GGAGGTTCCTCCTTTGCCCA+AGG | - | chr7_2:81399688-81399707 | Msa1081580:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 81398988 | 81402480 | 81398988 | ID=Msa1081580;Name=Msa1081580 |
| chr7_2 | mRNA | 81398988 | 81402480 | 81398988 | ID=Msa1081580-mRNA-1;Parent=Msa1081580;Name=Msa1081580-mRNA-1;_AED=0.14;_eAED=0.14;_QI=164|1|1|1|0.5|0.8|5|469|359 |
| chr7_2 | exon | 81398988 | 81399449 | 81398988 | ID=Msa1081580-mRNA-1:exon:20871;Parent=Msa1081580-mRNA-1 |
| chr7_2 | exon | 81399822 | 81399919 | 81399822 | ID=Msa1081580-mRNA-1:exon:20870;Parent=Msa1081580-mRNA-1 |
| chr7_2 | exon | 81400404 | 81400672 | 81400404 | ID=Msa1081580-mRNA-1:exon:20869;Parent=Msa1081580-mRNA-1 |
| chr7_2 | exon | 81400997 | 81401158 | 81400997 | ID=Msa1081580-mRNA-1:exon:20868;Parent=Msa1081580-mRNA-1 |
| chr7_2 | exon | 81401759 | 81402480 | 81401759 | ID=Msa1081580-mRNA-1:exon:20867;Parent=Msa1081580-mRNA-1 |
| chr7_2 | five_prime_UTR | 81402317 | 81402480 | 81402317 | ID=Msa1081580-mRNA-1:five_prime_utr;Parent=Msa1081580-mRNA-1 |
| chr7_2 | CDS | 81401759 | 81402316 | 81401759 | ID=Msa1081580-mRNA-1:cds;Parent=Msa1081580-mRNA-1 |
| chr7_2 | CDS | 81400997 | 81401158 | 81400997 | ID=Msa1081580-mRNA-1:cds;Parent=Msa1081580-mRNA-1 |
| chr7_2 | CDS | 81400404 | 81400672 | 81400404 | ID=Msa1081580-mRNA-1:cds;Parent=Msa1081580-mRNA-1 |
| chr7_2 | CDS | 81399829 | 81399919 | 81399829 | ID=Msa1081580-mRNA-1:cds;Parent=Msa1081580-mRNA-1 |
| chr7_2 | three_prime_UTR | 81399822 | 81399828 | 81399822 | ID=Msa1081580-mRNA-1:three_prime_utr;Parent=Msa1081580-mRNA-1 |
| chr7_2 | three_prime_UTR | 81398988 | 81399449 | 81398988 | ID=Msa1081580-mRNA-1:three_prime_utr;Parent=Msa1081580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
