AlfalfaGEDB | Msa1094310

M. sativa cultivar zhongmu-4 / Msa1094310

KEGG: K18730
GO: -
PFAM: PF02213.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1094310	XP_039683457.1	97.509	1646	40	1	1	1646	1	1645	0.0	3284

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1094310	sp\|Q9FMM3\|EXA1_ARATH	53.774	106	49	0	514	619	521	626	2.14e-22	109
Msa1094310	sp\|Q9FMM3\|EXA1_ARATH	31.161	353	193	15	49	369	27	361	1.66e-21	106

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1094310	G7L261	97.450	1647	40	2	1	1646	1	1646	0.0	3279

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1054360	Msa1094310	0.905228	5.355065e-80	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1094310	MtrunA17_Chr7g0224511	97.439	1640	40	2	1	1639	1	1639	0.0	3262
Msa1094310	MtrunA17_Chr1g0154961	33.333	384	184	18	41	377	16	374	2.79e-24	111
Msa1094310	MtrunA17_Chr1g0154961	67.188	64	21	0	535	598	513	576	1.94e-20	99.0
Msa1094310	MtrunA17_Chr3g0141531	64.062	64	23	0	537	600	15	78	9.46e-20	85.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1094310	AT1G24300.3	38.402	776	349	29	3	745	1	680	4.78e-116	400
Msa1094310	AT1G24300.3	28.457	376	204	15	966	1290	832	1193	1.23e-11	70.5
Msa1094310	AT1G27430.2	38.628	787	346	27	3	749	1	690	1.32e-115	399
Msa1094310	AT1G27430.2	29.144	374	209	16	966	1290	828	1194	4.01e-14	79.0
Msa1094310	AT1G27430.3	38.628	787	346	27	3	749	1	690	2.39e-115	398
Msa1094310	AT1G27430.3	29.144	374	209	16	966	1290	828	1194	4.20e-14	78.6
Msa1094310	AT1G24300.2	38.531	776	348	30	3	745	1	680	4.15e-115	400
Msa1094310	AT1G24300.2	28.457	376	204	15	966	1290	832	1193	1.22e-11	70.5
Msa1094310	AT1G24300.1	38.015	776	357	28	3	745	1	685	5.50e-115	399
Msa1094310	AT1G24300.1	28.457	376	204	15	966	1290	837	1198	1.22e-11	70.5

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Find 471 sgRNAs with CRISPR-Local

Find 702 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGAAGTTGTTGGTCTG+AGG	0.552520	7_3:+15876366	None:intergenic
AAACAACTTTCAATCAGTAG+TGG	0.616528	7_3:-15878760	Msa1094310:CDS
AAACAAGGTTGCCGAATCAG+AGG	0.599259	7_3:-15878470	Msa1094310:CDS
AAACGAAGTTGTTGGTCTGA+GGG	0.581078	7_3:+15876367	None:intergenic
AAACTAGTTTGCTCGGGAGA+AGG	0.498762	7_3:-15879795	Msa1094310:CDS
AAAGCCAACTGGCAATCCAG+TGG	0.650008	7_3:-15880968	Msa1094310:CDS
AAAGCCTGTTCTTCCTGAGG+CGG	0.607820	7_3:-15873681	Msa1094310:CDS
AAAGGACCCAGTTGATCTGA+TGG	0.556186	7_3:+15875995	None:intergenic
AAATGATCCATTTCTAGAGA+GGG	0.588078	7_3:-15875579	Msa1094310:CDS
AAATTGGCTGGAAGCAACAA+CGG	0.618786	7_3:-15877492	Msa1094310:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGAATAATAGAAGGGTTT+GGG	+	chr7_3:15873226-15873245	None:intergenic	30.0%
GAAGAGAGAGAATAATAGAA+GGG	+	chr7_3:15873232-15873251	None:intergenic	30.0%
AGAAGAGAGAGAATAATAGA+AGG	+	chr7_3:15873233-15873252	None:intergenic	30.0%
GATTGAAATAGGAATCAGAA+TGG	+	chr7_3:15873577-15873596	None:intergenic	30.0%
AGTTGAATTGTAATTAGTGG+AGG	-	chr7_3:15874011-15874030	Msa1094310:CDS	30.0%
GTTTCAATTCTTCTTACAAC+TGG	+	chr7_3:15874097-15874116	None:intergenic	30.0%
TACTAATCTGAATTGCTTTG+TGG	-	chr7_3:15874146-15874165	Msa1094310:intron	30.0%
TCACAATATACGCAAAAATG+AGG	+	chr7_3:15874498-15874517	None:intergenic	30.0%
TTACACTTCTTGCATTCTTA+TGG	-	chr7_3:15874661-15874680	Msa1094310:intron	30.0%
CATGTGCTCATTATCTTATT+TGG	-	chr7_3:15874788-15874807	Msa1094310:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	15873201	15882406	15873201	ID=Msa1094310;Name=Msa1094310
chr7_3	mRNA	15873201	15882406	15873201	ID=Msa1094310-mRNA-1;Parent=Msa1094310;Name=Msa1094310-mRNA-1;_AED=0.02;_eAED=0.02;_QI=261\|1\|1\|1\|1\|1\|11\|310\|1646
chr7_3	exon	15873201	15873842	15873201	ID=Msa1094310-mRNA-1:exon:3557;Parent=Msa1094310-mRNA-1
chr7_3	exon	15873919	15874067	15873919	ID=Msa1094310-mRNA-1:exon:3556;Parent=Msa1094310-mRNA-1
chr7_3	exon	15874912	15874984	15874912	ID=Msa1094310-mRNA-1:exon:3555;Parent=Msa1094310-mRNA-1
chr7_3	exon	15875195	15877528	15875195	ID=Msa1094310-mRNA-1:exon:3554;Parent=Msa1094310-mRNA-1
chr7_3	exon	15877828	15878571	15877828	ID=Msa1094310-mRNA-1:exon:3553;Parent=Msa1094310-mRNA-1
chr7_3	exon	15878659	15878805	15878659	ID=Msa1094310-mRNA-1:exon:3552;Parent=Msa1094310-mRNA-1
chr7_3	exon	15878892	15878988	15878892	ID=Msa1094310-mRNA-1:exon:3551;Parent=Msa1094310-mRNA-1
chr7_3	exon	15879117	15879941	15879117	ID=Msa1094310-mRNA-1:exon:3550;Parent=Msa1094310-mRNA-1
chr7_3	exon	15880966	15881057	15880966	ID=Msa1094310-mRNA-1:exon:3549;Parent=Msa1094310-mRNA-1
chr7_3	exon	15881351	15881410	15881351	ID=Msa1094310-mRNA-1:exon:3548;Parent=Msa1094310-mRNA-1
chr7_3	exon	15882058	15882406	15882058	ID=Msa1094310-mRNA-1:exon:3547;Parent=Msa1094310-mRNA-1
chr7_3	five_prime_UTR	15882146	15882406	15882146	ID=Msa1094310-mRNA-1:five_prime_utr;Parent=Msa1094310-mRNA-1
chr7_3	CDS	15882058	15882145	15882058	ID=Msa1094310-mRNA-1:cds;Parent=Msa1094310-mRNA-1
chr7_3	CDS	15881351	15881410	15881351	ID=Msa1094310-mRNA-1:cds;Parent=Msa1094310-mRNA-1
chr7_3	CDS	15880966	15881057	15880966	ID=Msa1094310-mRNA-1:cds;Parent=Msa1094310-mRNA-1
chr7_3	CDS	15879117	15879941	15879117	ID=Msa1094310-mRNA-1:cds;Parent=Msa1094310-mRNA-1
chr7_3	CDS	15878892	15878988	15878892	ID=Msa1094310-mRNA-1:cds;Parent=Msa1094310-mRNA-1
chr7_3	CDS	15878659	15878805	15878659	ID=Msa1094310-mRNA-1:cds;Parent=Msa1094310-mRNA-1
chr7_3	CDS	15877828	15878571	15877828	ID=Msa1094310-mRNA-1:cds;Parent=Msa1094310-mRNA-1
chr7_3	CDS	15875195	15877528	15875195	ID=Msa1094310-mRNA-1:cds;Parent=Msa1094310-mRNA-1
chr7_3	CDS	15874912	15874984	15874912	ID=Msa1094310-mRNA-1:cds;Parent=Msa1094310-mRNA-1
chr7_3	CDS	15873919	15874067	15873919	ID=Msa1094310-mRNA-1:cds;Parent=Msa1094310-mRNA-1
chr7_3	CDS	15873511	15873842	15873511	ID=Msa1094310-mRNA-1:cds;Parent=Msa1094310-mRNA-1
chr7_3	three_prime_UTR	15873201	15873510	15873201	ID=Msa1094310-mRNA-1:three_prime_utr;Parent=Msa1094310-mRNA-1

Gene Sequence

>Msa1094310

ATGGCGATGAGCGACGGCACCAAAATGAATCTCCCCGACGATCTCTTCTCATCCAAACTCACCGATTCGTCGCACTCTTCTCTCAAAGATGAAGCATCTGGAGGACACGGGGAGAAAGGCATTGCGGCACTACTCGATGATTCGAAAGATCAAGTGTCATCTGACAGCAGCATACCGTTATCCCCACAGTGGCTTTATTCCAAACCTGTTGATGCAAAGCCAACTGGCAATCCAGTGGGGGTGAATTCCAATGATCCTGTACTGAAGGATAATTGGCGTTTGGAGGGGTCTTTCGACAAGAAAGATTGGAGAAAGACTACTCCCGATGTTGAGATCAGTCGAAGGTGGCGCGAAGAGGAGAGAGAAACTAGTTTGCTCGGGAGAAGGGATCGTAGAAAAGAAGATCGTCGTTTGGAGAACACCTCAACCTCGGAGAATAGGTCCTTGCCTGCTGATCGTTGGAATGATAGCCGTGGTTCTGGCAATGACTCTCGGAGAGAGAATAAGTGGTCATCAAGATGGGGTCCTGAAGAAAAAGAAAAGGATGCTCGAAGTGAGAAAAGGAATGATGCGGAGAAGGAAGATGGCCATGCAGAAAAACAATCCACTGGTGCTAGCAACCGTGCAGTTTCTGATCGTGACACTGATTCCCGTGATAAATGGAGGCCACGACATCGCTTGGAATCTCAAGCAGCAGGTGTGGCCACATACCGTGCTGCACCTGGATTTGGGCTGGAGAAAGGACGTACAGAGGGCTCCAATGTGCGATTTTCACCAGGAAGAGGAAGGGCAAATTTCAATGCAAACCTTCAAATTGGAAGGCCTCCCATAGGCTCTAGTGTTGGATCTGTACTTATGGATACTAATAAAAATATACTGGGGAAGCCTAGCCTTGGTGCTGATTCATACTGCTACCCAAGGGGTAAGCTTCTTGACATATATCGTAAGCAAAAGGGCGATCCATCTTTTGTGAGTATGCCTTCTGAGGTGGAACAAACGTCGCCGATAACTCAAATTGATCTGGTAGAACCATTAGCATTTGTTGCTCCTGCAGACGAGGAGGAGGCTGTCCTTAAAGATATATGGAAGGGAAAAATTACTAGCAGTGAAGTCTCAGGCTACTCTAGAGGAAAGGATGGAGAGTCAATTGGTGATATATCTGGTTCTGGCGCTTTAAGTGAAGGAAAACAACTTTCAATCAGTAGTGGTGGAAAGGTTATATCAGGAAACGAAATCTTAAATGAATCTGATCAAATTTTTATTGAATCAGCATCAACTGCTGGTGGTTCGTTGACAAATGCAGCTGAGGAAGTTGCAAATTTTCAAGAAGGCAAGCAGAAACATGTGCCAACTATGGGCATGCATTGGAAAGATGAGATTATTCCCAGAAACAAGGTTGCCGAATCAGAGGCTTTTGCTTACCATCAGGGACAATTTTCTGCTTTTGAGGAACATGCTAATCAGGATGGGATCAAGTCATTGGCCTCAGAAAATAGTAAAAGCCTTCCTGATGATTCCCGCTCTCTCTTTGATTTTACATCTTTGCGGCAAAGTCCAAGTATTAGTCAACATAATGAGAAGAAATATCCATCTGAAAATGTTGCTGCTCCCGAGGAGTTGAGTTTATGCTATTTGGACCCTCAAGGGATGATTCAAGGACCCTTTCTTGGGATTGACATCATTTTGTGGTTTGAACAAGGTTTTTTTGGGATTGACTTGCCTGTTCGCTCGTCAGATGCCCCAGAAGGATCTCCTTTTCAAGAACTTGGTGACGTTATGCCTCATTTGAGAGTCAACACCGGGTTAGGTTCTGATAGTAACATGGTTAATCAGTCAGAACCATCTGATGCCATTGGAAGAAACCTGAAAGTTGATGTAAATGCATTTGACTATAATGGGTCTTCTTTTGCTGACGATCAACCATGGTCTTCATCCCGACCCGGTTCTACATCCAGTGTTGGTATTCCTTCCCAAACACCTAATCGCAGTTATCACCCTGAAATCAAGTTCTCTGATGAGCAGTACTTCAATAACATTGTTGCACAAGATGAGGGTACCACAATATCAAAATTGGCTGGAAGCAACAACGGCAACCCTTTGATGAGACCTGTGGATGCCAATGCTGCATATTCCCATCATACAGGAAAACCTGTTGCAAATGAAGCTATTGGGAGTGACACTCATAATAGTGAGGCAGATAAGTTACATCCCTTTGGTTTATTAATGTCTGAACTCAGAGATGGATCTCAGTTAAGGCGTGCACAATCCTCCAACAGTTCTTTAAGATTGGGTGACCAGAGTCATTTTACTGATCCACTAATTGATAGAGATGCTCCTTTTACTGATCAAAGCTCTATGGGTGGCATGGTTAATCAGTCTTCTTTCAGGGATACCTGGACCGACGAATATGGGATAAATAGGCATTTTAATCCTAATCAGCGTGTAGGTTCACTTGAAGATCAGTTTTTGTCTCGGATTGGACCAAACTTTAATAATTTTGATGTGGCAGACCATCTTATGCTGCAGAAGCTGCAGAAGGAACGCCTTCAGCAGCAGCAGGCGGAGCGACTTCAACAGCAGCAGGCAGAACGTCTTCAGCAGCAGCAGGCTGAACGTCTTCAGCTGCAGCAGGCTGAACGTCTTCAGCAGCAGCAGGCTGAACGACTTCAGCAGCAGACTAATATATCTAGTCATTTCCCTGCATATCTTAATGGGTCGGATTTAGATAGATTTCCTGGTTTCTCTCCATCTCAAAGCAATAAATCTGGCATCCAGCAAATGATGCAGAATCCTGGGACAGATTTCGAACGTCTTTTCGAACTGCAGGCTCAACAACGCCAGCTTGAGATTCAACAGCAAGATATGCACCATCAACAACTACTTCAACAATTGAAACTACAACCCCAACAACAGTCTCAAGTTCAGCAGTTGCTTCTTGAGCAGTTAATGCATCAGCAGATGTCTGATCCGAATTTTGGACAGTCAAAACACGATCCTTCTAGGGATAACTTGCTAGATCAGGTACAATTGCGGAGATATCTGCATGACTTGCAGCAGAATCCACATTCTTTAGGGCACCTTGATCCATCAATGGAGCAGTTTATCCAAGCAAATATAGGTCTCAATGCTGCGCAAGGAAGGCAAGCTGATTTGTCAGAGCTCTTGTTGCAAGCAAGGCATGGAAATATATTGCCCTCAGACCAACAACTTCGTTTTCAGCAAGACCAGTTGCAAGCTCAGCAGTTATCTTTGGCACTTAGACAGCAGTTAGGGCTGGATGGAGAAAGGCATTTTGGTAGGTCACGATCAATTAATGAAACTGGACAGTTAGTAAGAAATCCATCAAGCCACCAACTAGGTCATTCTGCTGGATTTAATGTTTCAGAAATCCACAAACAACAGCAGATGCTTGCGGCTCAAGAGGAGCAATTAAATTTCCTGGGAAGGAATCATCTTGAGCAGAACCAAAGAGGGTTCTATGATCCTAGTTCTATGATGTTTGAGAGGTCCTCGCCTGTTAATGTGCAAGGAAGGGAATTATTAGAACGCCGTCGCTTCATGCACCCATCAGATCAACTGGGTCCTTTGTCTTCTCACCACAACCTACAATCATCTGATGATCTATTTGGTCACCATTCCCTCTCTGGGAACAATGGCCATGTGGATAATAACTGGATTGATCCACGGTTGCAGCTTCAACATCTTGAAGCTATGAGGCAGAGAAGAGAGTTGGGGGATAATATCACATCAGCAGATCTGAACATAGCTGCATCCGCTGTAGGTCATGAAGAGAGTTCAGGACGAGGTTTTGTGGACCTTCTTCATCAGAAACTGGGTCTTCAATCTGCACAATCATCAACTGTTGATAAGTGGAATCACCCCCTTTCGTCAAGAAGTCATGATAATAAGTCTTGGCATGTTCCAGAGGGTAGCACGATGCTTCATCATTTTGAGCTTCCTCCAGATCAGCAAGCCCATATAAATGATCCATTTCTAGAGAGGGCTCAGAGTGCAAATTCCAGTGCGCTAATGCATGATCATTTAACCAACATACATATGAACGAGCATTACAAAAATCTAGGGAATACTGAAAGAGTGCCTCTTCGATCGAGATCTGGTTCATTACTTGAAGAACAATCACTGTTATCTTCGAATAAGGATACTTTGCATCCCAATTACAGAATTCCTTTTCAGATTGGTAAATCATCTATGGAGAAAGACTTGCTTGAGTTGGATACCAATAAAGGACACAGACATGAATTTATGGGCACAATGGGAAAGTTTGTTCCTGGGATGTCAGAGTTGTCAGAACAAGTGGAAAACCCAATGCCATCCATGGAAATGCCTTCTATTGCTCATAGTAGACATAGCTCGCTAAGTAGTGCAGGTGGTGATGGCGGCTCTTTTGGTCGTGAGATGGGTTTGAATAGCTCACGTGGAGACGAGGTTTCTAGTGACAGGATTCCTCCTTCAACAAAAGGGTTTGATAATGCTTTCCATAAGCGCCCTCACGTGTCTCGGGTTTTGTCCTCTCCAGACGTCCAGTCAGACCAACCATCTGTACCTCATGTCAGTCAGAACCAATTATTAAACCTTGCATCTAGCGAAGGGAGGCGAGAACCCTCTGGAAATCTGTCAGCTGCCAGCATGAGTGATGCTCAAGCTGCTGGGAAGAAAGAGGCTCGGTTTAGATCTTCATCCTTCAGTGAAGGTGCTATGTCAGAAGCATCATTTATAGATATGCTTAAAAAGCCTGTTCTTCCTGAGGCGGATGTGCATCAAACCAGTGGAGCTGCGGCTGAGCCAGCTGATGGTGGTCAAGCAGGGCGAGGTGGTAAGAAGAAGGGAAAGAAAGGAAAGCAGATAGATCCTTCTCTTCTTGGTTTCAAGGTCTCCAGTAACCGAATCATGATGGGTGAGATTCAACGCCCTGATGATTAA

Protein sequence

>Msa1094310

MAMSDGTKMNLPDDLFSSKLTDSSHSSLKDEASGGHGEKGIAALLDDSKDQVSSDSSIPLSPQWLYSKPVDAKPTGNPVGVNSNDPVLKDNWRLEGSFDKKDWRKTTPDVEISRRWREEERETSLLGRRDRRKEDRRLENTSTSENRSLPADRWNDSRGSGNDSRRENKWSSRWGPEEKEKDARSEKRNDAEKEDGHAEKQSTGASNRAVSDRDTDSRDKWRPRHRLESQAAGVATYRAAPGFGLEKGRTEGSNVRFSPGRGRANFNANLQIGRPPIGSSVGSVLMDTNKNILGKPSLGADSYCYPRGKLLDIYRKQKGDPSFVSMPSEVEQTSPITQIDLVEPLAFVAPADEEEAVLKDIWKGKITSSEVSGYSRGKDGESIGDISGSGALSEGKQLSISSGGKVISGNEILNESDQIFIESASTAGGSLTNAAEEVANFQEGKQKHVPTMGMHWKDEIIPRNKVAESEAFAYHQGQFSAFEEHANQDGIKSLASENSKSLPDDSRSLFDFTSLRQSPSISQHNEKKYPSENVAAPEELSLCYLDPQGMIQGPFLGIDIILWFEQGFFGIDLPVRSSDAPEGSPFQELGDVMPHLRVNTGLGSDSNMVNQSEPSDAIGRNLKVDVNAFDYNGSSFADDQPWSSSRPGSTSSVGIPSQTPNRSYHPEIKFSDEQYFNNIVAQDEGTTISKLAGSNNGNPLMRPVDANAAYSHHTGKPVANEAIGSDTHNSEADKLHPFGLLMSELRDGSQLRRAQSSNSSLRLGDQSHFTDPLIDRDAPFTDQSSMGGMVNQSSFRDTWTDEYGINRHFNPNQRVGSLEDQFLSRIGPNFNNFDVADHLMLQKLQKERLQQQQAERLQQQQAERLQQQQAERLQLQQAERLQQQQAERLQQQTNISSHFPAYLNGSDLDRFPGFSPSQSNKSGIQQMMQNPGTDFERLFELQAQQRQLEIQQQDMHHQQLLQQLKLQPQQQSQVQQLLLEQLMHQQMSDPNFGQSKHDPSRDNLLDQVQLRRYLHDLQQNPHSLGHLDPSMEQFIQANIGLNAAQGRQADLSELLLQARHGNILPSDQQLRFQQDQLQAQQLSLALRQQLGLDGERHFGRSRSINETGQLVRNPSSHQLGHSAGFNVSEIHKQQQMLAAQEEQLNFLGRNHLEQNQRGFYDPSSMMFERSSPVNVQGRELLERRRFMHPSDQLGPLSSHHNLQSSDDLFGHHSLSGNNGHVDNNWIDPRLQLQHLEAMRQRRELGDNITSADLNIAASAVGHEESSGRGFVDLLHQKLGLQSAQSSTVDKWNHPLSSRSHDNKSWHVPEGSTMLHHFELPPDQQAHINDPFLERAQSANSSALMHDHLTNIHMNEHYKNLGNTERVPLRSRSGSLLEEQSLLSSNKDTLHPNYRIPFQIGKSSMEKDLLELDTNKGHRHEFMGTMGKFVPGMSELSEQVENPMPSMEMPSIAHSRHSSLSSAGGDGGSFGREMGLNSSRGDEVSSDRIPPSTKGFDNAFHKRPHVSRVLSSPDVQSDQPSVPHVSQNQLLNLASSEGRREPSGNLSAASMSDAQAAGKKEARFRSSSFSEGAMSEASFIDMLKKPVLPEADVHQTSGAAAEPADGGQAGRGGKKKGKKGKQIDPSLLGFKVSSNRIMMGEIQRPDD*