Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099170 | XP_003621414.1 | 95.011 | 461 | 17 | 3 | 1 | 460 | 1 | 456 | 0.0 | 739 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099170 | sp|Q5XVC4|MDP60_ARATH | 49.583 | 480 | 185 | 14 | 17 | 459 | 23 | 482 | 2.45e-120 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099170 | G7L582 | 95.011 | 461 | 17 | 3 | 1 | 460 | 1 | 456 | 0.0 | 739 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0072520 | Msa1099170 | 0.803547 | 3.309112e-49 | -8.615850e-47 |
| Msa0780910 | Msa1099170 | 0.818259 | 2.152405e-52 | -8.615850e-47 |
| Msa0821160 | Msa1099170 | 0.835003 | 2.161119e-56 | -8.615850e-47 |
| Msa1008170 | Msa1099170 | 0.859906 | 2.990100e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099170 | MtrunA17_Chr7g0218721 | 95.011 | 461 | 17 | 3 | 1 | 460 | 1 | 456 | 0.0 | 739 |
| Msa1099170 | MtrunA17_Chr6g0454541 | 48.911 | 505 | 163 | 16 | 23 | 460 | 8 | 484 | 3.80e-123 | 367 |
| Msa1099170 | MtrunA17_Chr3g0109961 | 44.828 | 116 | 61 | 2 | 340 | 454 | 49 | 162 | 1.15e-22 | 94.7 |
| Msa1099170 | MtrunA17_Chr4g0051971 | 43.103 | 116 | 63 | 2 | 340 | 454 | 9 | 122 | 1.27e-20 | 87.8 |
| Msa1099170 | MtrunA17_Chr4g0040361 | 28.696 | 230 | 102 | 5 | 284 | 452 | 518 | 746 | 4.34e-17 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099170 | AT5G15510.1 | 51.266 | 474 | 184 | 12 | 6 | 440 | 11 | 476 | 2.82e-140 | 412 |
| Msa1099170 | AT5G15510.4 | 51.220 | 451 | 177 | 11 | 6 | 421 | 11 | 453 | 1.03e-132 | 391 |
| Msa1099170 | AT5G15510.3 | 51.220 | 451 | 177 | 11 | 6 | 421 | 11 | 453 | 1.03e-132 | 391 |
| Msa1099170 | AT5G15510.2 | 51.220 | 451 | 177 | 11 | 6 | 421 | 11 | 453 | 8.41e-132 | 391 |
| Msa1099170 | AT3G01015.1 | 49.583 | 480 | 185 | 14 | 17 | 459 | 23 | 482 | 2.49e-121 | 363 |
| Msa1099170 | AT5G37478.4 | 41.803 | 122 | 64 | 1 | 338 | 459 | 36 | 150 | 1.84e-22 | 94.0 |
| Msa1099170 | AT5G37478.1 | 41.803 | 122 | 64 | 1 | 338 | 459 | 56 | 170 | 2.12e-22 | 94.4 |
| Msa1099170 | AT5G37478.2 | 41.803 | 122 | 64 | 1 | 338 | 459 | 23 | 137 | 3.42e-22 | 92.8 |
| Msa1099170 | AT1G03780.3 | 29.327 | 208 | 88 | 3 | 286 | 434 | 522 | 729 | 2.04e-17 | 85.5 |
| Msa1099170 | AT1G03780.2 | 29.327 | 208 | 88 | 3 | 286 | 434 | 522 | 729 | 2.31e-17 | 85.5 |
Find 142 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCTTCTGTTTCTTCTTCT+TGG | 0.155336 | 7_3:-27497910 | Msa1099170:CDS |
| CCATCTTCATCCTCATTCTT+AGG | 0.170994 | 7_3:+27498034 | None:intergenic |
| AGAGAGAATGATGATGTTTC+TGG | 0.200384 | 7_3:-27497992 | Msa1099170:CDS |
| GAATTTCCTTCGCCGGATTT+TGG | 0.204787 | 7_3:+27498447 | None:intergenic |
| GAACAAGAAGGAGGAGTATT+AGG | 0.211260 | 7_3:+27498532 | None:intergenic |
| ACAACTACATTATCAATTTC+AGG | 0.212730 | 7_3:+27498208 | None:intergenic |
| CAGAATTAACAAAATGTATC+TGG | 0.213904 | 7_3:+27494373 | None:intergenic |
| CAGAATTAACAAAATGTATC+TGG | 0.213904 | 7_3:+27494562 | None:intergenic |
| TTTCGGTGTTTGTTGAATTC+TGG | 0.233295 | 7_3:+27498573 | None:intergenic |
| TCCTCACCTCCTTGGGATAA+AGG | 0.244906 | 7_3:+27494818 | None:intergenic |
| GTTTGAGGAGAATTGGGATT+AGG | 0.249967 | 7_3:+27498469 | None:intergenic |
| CTTCATAGAGCAATATAAAT+TGG | 0.265056 | 7_3:-27495034 | Msa1099170:CDS |
| TATGGCATAGGTTGTGCTTT+TGG | 0.268988 | 7_3:+27494852 | None:intergenic |
| TTGGGATTAGGGTTAGGGTT+AGG | 0.274391 | 7_3:+27498481 | None:intergenic |
| TGCTTCTGTTTCTTCTTCTT+GGG | 0.275677 | 7_3:-27497909 | Msa1099170:CDS |
| AGAGAGAGTGTTACACAAAT+TGG | 0.277069 | 7_3:-27498109 | Msa1099170:CDS |
| TTTGAGGAGAATTGGGATTA+GGG | 0.289446 | 7_3:+27498470 | None:intergenic |
| AGTTGAGGCAGGAGGAGTTT+TGG | 0.313368 | 7_3:+27494404 | None:intergenic |
| AGTTGAGGCAGGAGGAGTTT+TGG | 0.313368 | 7_3:+27494593 | None:intergenic |
| AAAAGAGGGTGATGTGGGTT+TGG | 0.321301 | 7_3:-27498176 | Msa1099170:CDS |
| TGATGGTGGTGATGGTGATC+CGG | 0.329948 | 7_3:-27498377 | Msa1099170:CDS |
| TGGGATTAGGGTTAGGGTTA+GGG | 0.334366 | 7_3:+27498482 | None:intergenic |
| GTTCGAAGCTTGAAAGGTTC+TGG | 0.353153 | 7_3:+27496135 | None:intergenic |
| ATAAAGGGTCTGTCGAAATA+TGG | 0.353466 | 7_3:+27494834 | None:intergenic |
| GTCAGGGAAGGTTCAGAGTT+TGG | 0.356185 | 7_3:-27498086 | Msa1099170:CDS |
| AAAGAGGGTGATGTGGGTTT+GGG | 0.356279 | 7_3:-27498175 | Msa1099170:CDS |
| CTTGACCTTCTTATGAAACT+TGG | 0.358432 | 7_3:+27494279 | None:intergenic |
| CTTGACCTTCTTATGAAACT+TGG | 0.358432 | 7_3:+27494468 | None:intergenic |
| CTTGACCTTCTTATGAAACT+TGG | 0.358432 | 7_3:+27494657 | None:intergenic |
| CAAGGAAGACCTTGTGCAAC+AGG | 0.373355 | 7_3:+27495868 | None:intergenic |
| AGCACGCGGTGTGGTTGTTC+CGG | 0.379453 | 7_3:+27498606 | None:intergenic |
| CCTCACCTCCTTGGGATAAA+GGG | 0.389323 | 7_3:+27494819 | None:intergenic |
| GGAGAATTGGGATTAGGGTT+AGG | 0.389466 | 7_3:+27498475 | None:intergenic |
| GAGAATTGGGATTAGGGTTA+GGG | 0.390209 | 7_3:+27498476 | None:intergenic |
| GATGGTGGTGATGGTGATCC+GGG | 0.393938 | 7_3:-27498376 | Msa1099170:CDS |
| CTGTTGCACAAGGTCTTCCT+TGG | 0.397605 | 7_3:-27495867 | Msa1099170:CDS |
| TCTGTTTCTTCTTCTTGGGA+TGG | 0.399475 | 7_3:-27497905 | Msa1099170:CDS |
| GCACATCAGTATGAAGCTTC+AGG | 0.399654 | 7_3:+27495641 | None:intergenic |
| AACAAGAAGGAGGAGTATTA+GGG | 0.402247 | 7_3:+27498533 | None:intergenic |
| AGAGAAGTAGAGAGAGATTG+AGG | 0.402924 | 7_3:-27498141 | Msa1099170:CDS |
| TTTACATTCTCAGTGTGTTT+CGG | 0.404933 | 7_3:+27498556 | None:intergenic |
| GAATCAACAACCACCACTCT+TGG | 0.407987 | 7_3:-27496201 | Msa1099170:CDS |
| AGAAGAGGTATTTGAACAAA+AGG | 0.423982 | 7_3:-27495929 | Msa1099170:CDS |
| GTATGAAGCTTCAGGTCAAC+AGG | 0.431022 | 7_3:+27495649 | None:intergenic |
| GAAGGTTCAGAGTTTGGTTA+AGG | 0.432189 | 7_3:-27498080 | Msa1099170:CDS |
| GTAATTGTAAAGAGAAGAAT+AGG | 0.432522 | 7_3:-27498336 | Msa1099170:CDS |
| AATCAACAACCACCACTCTT+GGG | 0.438310 | 7_3:-27496200 | Msa1099170:CDS |
| ATCGCAGCTTGACATCTAAA+GGG | 0.440478 | 7_3:-27496342 | Msa1099170:intron |
| TTGACCTTCTTATGAAACTT+GGG | 0.444865 | 7_3:+27494280 | None:intergenic |
| TTGACCTTCTTATGAAACTT+GGG | 0.444865 | 7_3:+27494469 | None:intergenic |
| TTGACCTTCTTATGAAACTT+GGG | 0.444865 | 7_3:+27494658 | None:intergenic |
| CGAAGGAAATTCGTTGTTGT+GGG | 0.449068 | 7_3:-27498436 | Msa1099170:CDS |
| TAGAGAGAGATTGAGGGAAG+AGG | 0.449147 | 7_3:-27498134 | Msa1099170:CDS |
| ATTCAACACTATTCAGAAAA+GGG | 0.453049 | 7_3:+27494327 | None:intergenic |
| ATTCAACACTATTCAGAAAA+GGG | 0.453049 | 7_3:+27494516 | None:intergenic |
| TAGATCAATCCTCACCTCCT+TGG | 0.457853 | 7_3:+27494810 | None:intergenic |
| AGATCAATCCTCACCTCCTT+GGG | 0.458607 | 7_3:+27494811 | None:intergenic |
| AATCGCAGCTTGACATCTAA+AGG | 0.459646 | 7_3:-27496343 | Msa1099170:intron |
| AATTCAACACTATTCAGAAA+AGG | 0.462770 | 7_3:+27494326 | None:intergenic |
| AATTCAACACTATTCAGAAA+AGG | 0.462770 | 7_3:+27494515 | None:intergenic |
| TGAATCGCCACCACTTTCTC+CGG | 0.464737 | 7_3:-27498650 | Msa1099170:five_prime_UTR |
| AGTGTTACACAAATTGGGTC+AGG | 0.465959 | 7_3:-27498103 | Msa1099170:CDS |
| TCATACTGATGTGCGGGCAC+TGG | 0.471606 | 7_3:-27495632 | Msa1099170:CDS |
| TGAGGATGAAGATGGAAAAG+AGG | 0.472467 | 7_3:-27498026 | Msa1099170:CDS |
| AGAATTAACAAAATGTATCT+GGG | 0.480655 | 7_3:+27494374 | None:intergenic |
| AGAATTAACAAAATGTATCT+GGG | 0.480655 | 7_3:+27494563 | None:intergenic |
| GGTATTGTAATTTCTTTGAC+CGG | 0.481455 | 7_3:+27495670 | None:intergenic |
| GAGAAGTAGAGAGAGATTGA+GGG | 0.487312 | 7_3:-27498140 | Msa1099170:CDS |
| TTTGTTTGAACCTAAGAATG+AGG | 0.489532 | 7_3:-27498044 | Msa1099170:CDS |
| CAGAAGGAAGATGTGAAGGA+AGG | 0.491151 | 7_3:-27498403 | Msa1099170:CDS |
| ACAGTGTTTGGCAAAACCTC+CGG | 0.491803 | 7_3:-27495689 | Msa1099170:intron |
| GACGTCTCAGAATCTTGGGT+TGG | 0.495055 | 7_3:-27497939 | Msa1099170:CDS |
| AGAAGGAAGATGTGAAGGAA+GGG | 0.496623 | 7_3:-27498402 | Msa1099170:CDS |
| CCGTGCCGAGTTTGATGAGC+AGG | 0.498748 | 7_3:-27495608 | Msa1099170:intron |
| GACATGTTCGCCGGAGAAAG+TGG | 0.502746 | 7_3:+27498640 | None:intergenic |
| GAAAGTGGTGGCGATTCAAT+CGG | 0.503132 | 7_3:+27498655 | None:intergenic |
| CAACAACGAATTTCCTTCGC+CGG | 0.505033 | 7_3:+27498440 | None:intergenic |
| AGAGCAATATAAATTGGAAA+AGG | 0.507125 | 7_3:-27495028 | Msa1099170:CDS |
| ATTCTCCTCAAACCAAAATC+CGG | 0.507221 | 7_3:-27498459 | Msa1099170:CDS |
| CTTGGGATGGATCTCGTGGA+AGG | 0.508275 | 7_3:-27497892 | Msa1099170:intron |
| GAGAGAGTGTTACACAAATT+GGG | 0.508579 | 7_3:-27498108 | Msa1099170:CDS |
| GAAGCTTGAAAGGTTCTGGC+CGG | 0.510027 | 7_3:+27496139 | None:intergenic |
| GAAACAGAAGGAAGATGTGA+AGG | 0.511692 | 7_3:-27498407 | Msa1099170:CDS |
| TGAAGATGGAAAAGAGGAGA+AGG | 0.516034 | 7_3:-27498020 | Msa1099170:CDS |
| CCTAAGAATGAGGATGAAGA+TGG | 0.517095 | 7_3:-27498034 | Msa1099170:CDS |
| GAAGGAAGATGTGAAGGAAG+GGG | 0.517993 | 7_3:-27498401 | Msa1099170:CDS |
| AAGGAAGATGTGAAGGAAGG+GGG | 0.526247 | 7_3:-27498400 | Msa1099170:CDS |
| GCTGAGAAAGAAGCAGCAAA+AGG | 0.526391 | 7_3:-27496166 | Msa1099170:CDS |
| AAGAGGAAAGGTTAAAGAAG+AGG | 0.529614 | 7_3:-27495944 | Msa1099170:CDS |
| GCGAAGGAAATTCGTTGTTG+TGG | 0.532060 | 7_3:-27498437 | Msa1099170:CDS |
| TGGGGAAGCTTAGTTGAGGC+AGG | 0.535030 | 7_3:+27494393 | None:intergenic |
| TGGGGAAGCTTAGTTGAGGC+AGG | 0.535030 | 7_3:+27494582 | None:intergenic |
| GCAGCAGCAGCTCATCGACA+TGG | 0.536697 | 7_3:-27494438 | Msa1099170:three_prime_UTR |
| GCAGCAGCAGCTCATCGACA+TGG | 0.536697 | 7_3:-27494627 | Msa1099170:CDS |
| AAGCTTGAAAGGTTCTGGCC+GGG | 0.543128 | 7_3:+27496140 | None:intergenic |
| GAAGCTTCATACTGATGTGC+GGG | 0.551550 | 7_3:-27495638 | Msa1099170:CDS |
| TGACCTTCTTATGAAACTTG+GGG | 0.556484 | 7_3:+27494281 | None:intergenic |
| TGACCTTCTTATGAAACTTG+GGG | 0.556484 | 7_3:+27494470 | None:intergenic |
| TGACCTTCTTATGAAACTTG+GGG | 0.556484 | 7_3:+27494659 | None:intergenic |
| TCGACAGACCCTTTATCCCA+AGG | 0.562484 | 7_3:-27494827 | Msa1099170:CDS |
| ACATCAGTTCGAAGCTTGAA+AGG | 0.569115 | 7_3:+27496129 | None:intergenic |
| TCTTCTTGGGATGGATCTCG+TGG | 0.569991 | 7_3:-27497896 | Msa1099170:CDS |
| AACATGTCTTCGATCGTCGC+CGG | 0.570564 | 7_3:-27498625 | Msa1099170:CDS |
| ATCAACAACCACCACTCTTG+GGG | 0.574386 | 7_3:-27496199 | Msa1099170:CDS |
| AGAAGCAGCAAAAGGTCACC+CGG | 0.579721 | 7_3:-27496158 | Msa1099170:CDS |
| CTCAAACCAAAATCCGGCGA+AGG | 0.586555 | 7_3:-27498453 | Msa1099170:CDS |
| CAAAGGATTCCTGTTGCACA+AGG | 0.590082 | 7_3:-27495877 | Msa1099170:CDS |
| AGAAATCAAAAGATTGCGAA+AGG | 0.592466 | 7_3:-27494883 | Msa1099170:CDS |
| TACACAAATTGGGTCAGGGA+AGG | 0.598008 | 7_3:-27498098 | Msa1099170:CDS |
| TCAGGTTCATCTGTTGTCCA+AGG | 0.599247 | 7_3:+27495850 | None:intergenic |
| AGACAGAAGAAGAGAAACAA+AGG | 0.605535 | 7_3:-27495894 | Msa1099170:CDS |
| CCTGCTCATCAAACTCGGCA+CGG | 0.609392 | 7_3:+27495608 | None:intergenic |
| ATTAATGCAGCAAAGAGGAA+AGG | 0.615667 | 7_3:-27495956 | Msa1099170:intron |
| GACCTTCTTATGAAACTTGG+GGG | 0.615822 | 7_3:+27494282 | None:intergenic |
| GACCTTCTTATGAAACTTGG+GGG | 0.615822 | 7_3:+27494471 | None:intergenic |
| GACCTTCTTATGAAACTTGG+GGG | 0.615822 | 7_3:+27494660 | None:intergenic |
| GAAGGAAATTCGTTGTTGTG+GGG | 0.616901 | 7_3:-27498435 | Msa1099170:CDS |
| ACGATCGAAGACATGTTCGC+CGG | 0.619472 | 7_3:+27498631 | None:intergenic |
| CAATTCAAAACACTCGAACC+CGG | 0.619852 | 7_3:+27498358 | None:intergenic |
| TGTGGGGAAGAAGAAACAGA+AGG | 0.627788 | 7_3:-27498419 | Msa1099170:CDS |
| TCGCAGCTTGACATCTAAAG+GGG | 0.628926 | 7_3:-27496341 | Msa1099170:intron |
| ATTGTAATTTCTTTGACCGG+AGG | 0.630255 | 7_3:+27495673 | None:intergenic |
| TGAAGCTTCATACTGATGTG+CGG | 0.635764 | 7_3:-27495639 | Msa1099170:CDS |
| GGAATATTAATGCAGCAAAG+AGG | 0.636673 | 7_3:-27495961 | Msa1099170:intron |
| AGGCACCTGCTCATCAAACT+CGG | 0.637136 | 7_3:+27495603 | None:intergenic |
| GTGTTACACAAATTGGGTCA+GGG | 0.638761 | 7_3:-27498102 | Msa1099170:CDS |
| GGAAGCTTAGTTGAGGCAGG+AGG | 0.643013 | 7_3:+27494396 | None:intergenic |
| GGAAGCTTAGTTGAGGCAGG+AGG | 0.643013 | 7_3:+27494585 | None:intergenic |
| ATGTTCGCCGGAGAAAGTGG+TGG | 0.647831 | 7_3:+27498643 | None:intergenic |
| GGTCTGTCGAAATATGGCAT+AGG | 0.651270 | 7_3:+27494840 | None:intergenic |
| GGAAAAGGAGAGACAACAGA+AGG | 0.651571 | 7_3:-27495013 | Msa1099170:intron |
| GAATTAACAAAATGTATCTG+GGG | 0.669369 | 7_3:+27494375 | None:intergenic |
| GAATTAACAAAATGTATCTG+GGG | 0.669369 | 7_3:+27494564 | None:intergenic |
| CGCAGCTTGACATCTAAAGG+GGG | 0.682120 | 7_3:-27496340 | Msa1099170:intron |
| TCAACAACCACCACTCTTGG+GGG | 0.683589 | 7_3:-27496198 | Msa1099170:CDS |
| GAAGAAGAAACAGAAGCACG+CGG | 0.692861 | 7_3:+27497914 | None:intergenic |
| TATCTGGGGAAGCTTAGTTG+AGG | 0.695692 | 7_3:+27494389 | None:intergenic |
| TATCTGGGGAAGCTTAGTTG+AGG | 0.695692 | 7_3:+27494578 | None:intergenic |
| CTGGATGATCTACAAGCACG+CGG | 0.696436 | 7_3:+27498592 | None:intergenic |
| TTGGACAACAGATGAACCTG+AGG | 0.703539 | 7_3:-27495848 | Msa1099170:intron |
| TGATCTACAAGCACGCGGTG+TGG | 0.720854 | 7_3:+27498597 | None:intergenic |
| ACAGACCCTTTATCCCAAGG+AGG | 0.735615 | 7_3:-27494824 | Msa1099170:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATAATAATAATAA+CGG | + | chr7_3:27496995-27497014 | None:intergenic | 0.0% |
| !!! | TTATTATTTTTGTATGAATA+AGG | - | chr7_3:27498345-27498364 | Msa1099170:CDS | 10.0% |
| !!! | ATAACTTATATTAGCTTAAT+TGG | + | chr7_3:27495285-27495304 | None:intergenic | 15.0% |
| !!! | TAACTTTTTAATTCAATCTA+TGG | - | chr7_3:27496496-27496515 | Msa1099170:intron | 15.0% |
| !! | TACCAAAAAAAAAAAAAAGA+AGG | + | chr7_3:27497497-27497516 | None:intergenic | 15.0% |
| !!! | ATACTCGTTTTTTTTTGTAA+CGG | + | chr7_3:27494302-27494321 | None:intergenic | 20.0% |
| !!! | AAGAAGAGTTTTTTAAGAAT+AGG | - | chr7_3:27494783-27494802 | Msa1099170:intron | 20.0% |
| !!! | AGAAGAGTTTTTTAAGAATA+GGG | - | chr7_3:27494784-27494803 | Msa1099170:intron | 20.0% |
| !!! | AAAATCGATTTTGTTTTCAA+AGG | - | chr7_3:27495236-27495255 | Msa1099170:intron | 20.0% |
| !!! | AAATCGATTTTGTTTTCAAA+GGG | - | chr7_3:27495237-27495256 | Msa1099170:intron | 20.0% |
| !! | AAAACTAATCAAAACATAAC+TGG | + | chr7_3:27495489-27495508 | None:intergenic | 20.0% |
| !!! | TTTTCATTTTCAATCAAAAC+AGG | + | chr7_3:27495576-27495595 | None:intergenic | 20.0% |
| !!! | TGCAAATCAACTTTTTTTAA+GGG | - | chr7_3:27495898-27495917 | Msa1099170:CDS | 20.0% |
| !!! | AACTTTTTTTAAGGGTTATT+TGG | - | chr7_3:27495906-27495925 | Msa1099170:CDS | 20.0% |
| !!! | AATAGAAATACAGTTTTGAT+TGG | - | chr7_3:27495938-27495957 | Msa1099170:CDS | 20.0% |
| !!! | AAACTAATCAAAAAGTATTC+AGG | + | chr7_3:27496419-27496438 | None:intergenic | 20.0% |
| !!! | ACTTTTTGATTAGTTTTAAC+AGG | - | chr7_3:27496423-27496442 | Msa1099170:intron | 20.0% |
| !!! | TGGATTATGACATTTTTTTA+TGG | - | chr7_3:27497074-27497093 | Msa1099170:intron | 20.0% |
| !! | AAAAGTTCACTATAATTAAG+TGG | - | chr7_3:27497279-27497298 | Msa1099170:intron | 20.0% |
| !! | TATATTGCTATAATGATATG+AGG | - | chr7_3:27497316-27497335 | Msa1099170:intron | 20.0% |
| !!! | CTCCTTCTTTTTTTTTTTTT+TGG | - | chr7_3:27497492-27497511 | Msa1099170:intron | 20.0% |
| !! | TATGAACTTAAAAAAGCAAA+TGG | + | chr7_3:27497858-27497877 | None:intergenic | 20.0% |
| !!! | ATTTGCTTTTTTAAGTTCAT+AGG | - | chr7_3:27497857-27497876 | Msa1099170:intron | 20.0% |
| !!! | TTTGCTTTTTTAAGTTCATA+GGG | - | chr7_3:27497858-27497877 | Msa1099170:intron | 20.0% |
| !! | AGAATTAACAAAATGTATCT+GGG | + | chr7_3:27498496-27498515 | None:intergenic | 20.0% |
| !! | AGAATTAACAAAATGTATCT+GGG | + | chr7_3:27498496-27498515 | None:intergenic | 20.0% |
| !!! | AGGTTTCTGTAATTTTTTCA+CGG | + | chr7_3:27494549-27494568 | None:intergenic | 25.0% |
| ! | GTAATTGTAAAGAGAAGAAT+AGG | - | chr7_3:27494720-27494739 | Msa1099170:intron | 25.0% |
| ! | ACAACTACATTATCAATTTC+AGG | + | chr7_3:27494851-27494870 | None:intergenic | 25.0% |
| ! | AGTTGTTGAAAAGAAAAAAG+AGG | - | chr7_3:27494865-27494884 | Msa1099170:CDS | 25.0% |
| ! | GTTGTTGAAAAGAAAAAAGA+GGG | - | chr7_3:27494866-27494885 | Msa1099170:CDS | 25.0% |
| ! | TGTATCCAATTTCAATCAAA+TGG | + | chr7_3:27495540-27495559 | None:intergenic | 25.0% |
| ! | CGTATATTAAACTAAACAGT+TGG | + | chr7_3:27495613-27495632 | None:intergenic | 25.0% |
| !!! | TCAAGTGTTTAGTTTTGATA+AGG | - | chr7_3:27495754-27495773 | Msa1099170:intron | 25.0% |
| ! | AATTGAATGCAAGTTCAATT+TGG | - | chr7_3:27495791-27495810 | Msa1099170:intron | 25.0% |
| !!! | TCAATTTGGATTAGTTTTGA+TGG | - | chr7_3:27495805-27495824 | Msa1099170:intron | 25.0% |
| !!! | TGGAAAATCAACTTTTTTCA+AGG | - | chr7_3:27495825-27495844 | Msa1099170:intron | 25.0% |
| !!! | GGAAAATCAACTTTTTTCAA+GGG | - | chr7_3:27495826-27495845 | Msa1099170:intron | 25.0% |
| !!! | GAAAATCAACTTTTTTCAAG+GGG | - | chr7_3:27495827-27495846 | Msa1099170:intron | 25.0% |
| !!! | AAAATCAACTTTTTTCAAGG+GGG | - | chr7_3:27495828-27495847 | Msa1099170:intron | 25.0% |
| !!! | CTGCAAATCAACTTTTTTTA+AGG | - | chr7_3:27495897-27495916 | Msa1099170:CDS | 25.0% |
| !! | ACAGAAAATCAACCTTTTTA+AGG | - | chr7_3:27495966-27495985 | Msa1099170:intron | 25.0% |
| !! | CAGAAAATCAACCTTTTTAA+GGG | - | chr7_3:27495967-27495986 | Msa1099170:intron | 25.0% |
| !!! | TCAAGTCTTTAGTTTTGATT+AGG | - | chr7_3:27496321-27496340 | Msa1099170:CDS | 25.0% |
| !!! | CAAGTCTTTAGTTTTGATTA+GGG | - | chr7_3:27496322-27496341 | Msa1099170:CDS | 25.0% |
| !!! | AGGAAATCAACATTTTTCAA+GGG | - | chr7_3:27496443-27496462 | Msa1099170:intron | 25.0% |
| !!! | TATAGTGAACTTTTGAGTTT+TGG | + | chr7_3:27497273-27497292 | None:intergenic | 25.0% |
| ! | ATAATTAAGTGGCATCTATA+TGG | - | chr7_3:27497290-27497309 | Msa1099170:intron | 25.0% |
| !!! | GTCTTTGTTTTTTCTTGAAT+TGG | - | chr7_3:27497827-27497846 | Msa1099170:intron | 25.0% |
| ! | CTTCATAGAGCAATATAAAT+TGG | - | chr7_3:27498022-27498041 | Msa1099170:CDS | 25.0% |
| ! | AGAGCAATATAAATTGGAAA+AGG | - | chr7_3:27498028-27498047 | Msa1099170:CDS | 25.0% |
| ! | ATTCATCAGCATTTAATGAA+AGG | + | chr7_3:27498122-27498141 | None:intergenic | 25.0% |
| !! | TTCTGAAGAGAAATCTAATA+AGG | + | chr7_3:27498312-27498331 | None:intergenic | 25.0% |
| ! | GAATTAACAAAATGTATCTG+GGG | + | chr7_3:27498495-27498514 | None:intergenic | 25.0% |
| ! | CAGAATTAACAAAATGTATC+TGG | + | chr7_3:27498497-27498516 | None:intergenic | 25.0% |
| ! | ATTCAACACTATTCAGAAAA+GGG | + | chr7_3:27498543-27498562 | None:intergenic | 25.0% |
| ! | AATTCAACACTATTCAGAAA+AGG | + | chr7_3:27498544-27498563 | None:intergenic | 25.0% |
| ! | GAATTAACAAAATGTATCTG+GGG | + | chr7_3:27498495-27498514 | None:intergenic | 25.0% |
| ! | CAGAATTAACAAAATGTATC+TGG | + | chr7_3:27498497-27498516 | None:intergenic | 25.0% |
| ! | ATTCAACACTATTCAGAAAA+GGG | + | chr7_3:27498543-27498562 | None:intergenic | 25.0% |
| ! | AATTCAACACTATTCAGAAA+AGG | + | chr7_3:27498544-27498563 | None:intergenic | 25.0% |
| TTTACATTCTCAGTGTGTTT+CGG | + | chr7_3:27494503-27494522 | None:intergenic | 30.0% | |
| !!! | AATTTTTTCACGGAACAAGA+AGG | + | chr7_3:27494539-27494558 | None:intergenic | 30.0% |
| !!! | ATTTTGGTTTGAGGAGAATT+GGG | + | chr7_3:27494596-27494615 | None:intergenic | 30.0% |
| TTTGTTTGAACCTAAGAATG+AGG | - | chr7_3:27495012-27495031 | Msa1099170:intron | 30.0% | |
| GTTATGTCTATTAATTGCCA+AGG | - | chr7_3:27495300-27495319 | Msa1099170:intron | 30.0% | |
| TCTGATCAAAACTATTCACT+TGG | + | chr7_3:27495415-27495434 | None:intergenic | 30.0% | |
| AAGAGCCATTTGATTGAAAT+TGG | - | chr7_3:27495532-27495551 | Msa1099170:intron | 30.0% | |
| CAATCAAATAGCCCTTAAAA+AGG | + | chr7_3:27495981-27496000 | None:intergenic | 30.0% | |
| ! | TAGTAAGTGAGTGCTAATTT+TGG | - | chr7_3:27496076-27496095 | Msa1099170:intron | 30.0% |
| !!! | ACAAGTTGCAGTTTTGATTA+AGG | - | chr7_3:27496132-27496151 | Msa1099170:CDS | 30.0% |
| ACTCACTTATTCATGACAAT+TGG | + | chr7_3:27496231-27496250 | None:intergenic | 30.0% | |
| ! | TGAGAAATCAACTCTTTTCA+AGG | - | chr7_3:27496379-27496398 | Msa1099170:intron | 30.0% |
| ! | GAGAAATCAACTCTTTTCAA+GGG | - | chr7_3:27496380-27496399 | Msa1099170:intron | 30.0% |
| ! | CAGGAAATCAACATTTTTCA+AGG | - | chr7_3:27496442-27496461 | Msa1099170:intron | 30.0% |
| !! | AGTGCTATTTCAGTATTAAC+AGG | - | chr7_3:27496561-27496580 | Msa1099170:intron | 30.0% |
| !! | AGGAAATCAACATTTTTCGA+GGG | - | chr7_3:27496581-27496600 | Msa1099170:intron | 30.0% |
| ATAATCCAAACAAAGTCTTC+GGG | + | chr7_3:27497062-27497081 | None:intergenic | 30.0% | |
| CATAATCCAAACAAAGTCTT+CGG | + | chr7_3:27497063-27497082 | None:intergenic | 30.0% | |
| !! | AGAAGAGGTATTTGAACAAA+AGG | - | chr7_3:27497127-27497146 | Msa1099170:intron | 30.0% |
| !! | TGAGGTATTTGACATTCTTT+TGG | - | chr7_3:27497334-27497353 | Msa1099170:intron | 30.0% |
| GGTATTGTAATTTCTTTGAC+CGG | + | chr7_3:27497389-27497408 | None:intergenic | 30.0% | |
| GGAGAAAATGAAGATAAAAG+AGG | + | chr7_3:27497476-27497495 | None:intergenic | 30.0% | |
| !! | TTTTTGGTAGATAGACGAAA+TGG | - | chr7_3:27497508-27497527 | Msa1099170:intron | 30.0% |
| TTGTGTGTGTGAGTTTATAA+TGG | + | chr7_3:27497539-27497558 | None:intergenic | 30.0% | |
| ! | GTTGAAAAAGTACAAGAAGA+AGG | + | chr7_3:27497659-27497678 | None:intergenic | 30.0% |
| !!! | GCCTATGTTTTTTCTTGATT+TGG | - | chr7_3:27497689-27497708 | Msa1099170:intron | 30.0% |
| GCCAAATCAAGAAAAAACAT+AGG | + | chr7_3:27497693-27497712 | None:intergenic | 30.0% | |
| CTGAAATATCCATATTCCAT+AGG | + | chr7_3:27497738-27497757 | None:intergenic | 30.0% | |
| ! | AGTATTGAAAAAGTACGACA+AGG | + | chr7_3:27497800-27497819 | None:intergenic | 30.0% |
| ACTTATGAAATGTGAGTTGT+AGG | - | chr7_3:27497944-27497963 | Msa1099170:CDS | 30.0% | |
| ATTCTTGTATCCACTAAAGT+TGG | - | chr7_3:27498140-27498159 | Msa1099170:CDS | 30.0% | |
| AGAAATCAAAAGATTGCGAA+AGG | - | chr7_3:27498173-27498192 | Msa1099170:CDS | 30.0% | |
| TTGACCTTCTTATGAAACTT+GGG | + | chr7_3:27498401-27498420 | None:intergenic | 30.0% | |
| TTGACCTTCTTATGAAACTT+GGG | + | chr7_3:27498401-27498420 | None:intergenic | 30.0% | |
| !! | TTTCGGTGTTTGTTGAATTC+TGG | + | chr7_3:27494486-27494505 | None:intergenic | 35.0% |
| !! | AACAAGAAGGAGGAGTATTA+GGG | + | chr7_3:27494526-27494545 | None:intergenic | 35.0% |
| TTTGAGGAGAATTGGGATTA+GGG | + | chr7_3:27494589-27494608 | None:intergenic | 35.0% | |
| !!! | GATTTTGGTTTGAGGAGAAT+TGG | + | chr7_3:27494597-27494616 | None:intergenic | 35.0% |
| ATTCTCCTCAAACCAAAATC+CGG | - | chr7_3:27494597-27494616 | Msa1099170:CDS | 35.0% | |
| AAAGAAAAAAGAGGGTGATG+TGG | - | chr7_3:27494874-27494893 | Msa1099170:CDS | 35.0% | |
| AAGAAAAAAGAGGGTGATGT+GGG | - | chr7_3:27494875-27494894 | Msa1099170:CDS | 35.0% | |
| !! | AGAGAGAGTGTTACACAAAT+TGG | - | chr7_3:27494947-27494966 | Msa1099170:intron | 35.0% |
| !! | GAGAGAGTGTTACACAAATT+GGG | - | chr7_3:27494948-27494967 | Msa1099170:intron | 35.0% |
| ! | AGAGAGAATGATGATGTTTC+TGG | - | chr7_3:27495064-27495083 | Msa1099170:intron | 35.0% |
| !! | ATTTTGACGTCTCAGAATCT+TGG | - | chr7_3:27495112-27495131 | Msa1099170:intron | 35.0% |
| ! | TTTTGACGTCTCAGAATCTT+GGG | - | chr7_3:27495113-27495132 | Msa1099170:intron | 35.0% |
| ! | TGCTTCTGTTTCTTCTTCTT+GGG | - | chr7_3:27495147-27495166 | Msa1099170:intron | 35.0% |
| !! | TAGCACTGATTTACTATCCT+TGG | + | chr7_3:27495320-27495339 | None:intergenic | 35.0% |
| TAGTAAATCAGTGCTATGCT+AGG | - | chr7_3:27495324-27495343 | Msa1099170:intron | 35.0% | |
| !! | GAGAAGATCAACTTTTTCCA+AGG | - | chr7_3:27495440-27495459 | Msa1099170:intron | 35.0% |
| AATGCAATCATAACAGTCCT+TGG | + | chr7_3:27495460-27495479 | None:intergenic | 35.0% | |
| ! | CAGGAAATCAACATTTTTCG+AGG | - | chr7_3:27496580-27496599 | Msa1099170:intron | 35.0% |
| GGAATATTAATGCAGCAAAG+AGG | - | chr7_3:27497095-27497114 | Msa1099170:intron | 35.0% | |
| ATTAATGCAGCAAAGAGGAA+AGG | - | chr7_3:27497100-27497119 | Msa1099170:intron | 35.0% | |
| AAGAGGAAAGGTTAAAGAAG+AGG | - | chr7_3:27497112-27497131 | Msa1099170:intron | 35.0% | |
| AGACAGAAGAAGAGAAACAA+AGG | - | chr7_3:27497162-27497181 | Msa1099170:intron | 35.0% | |
| CTTCTCATTACGTAGCAAAA+CGG | + | chr7_3:27497239-27497258 | None:intergenic | 35.0% | |
| ATTGTAATTTCTTTGACCGG+AGG | + | chr7_3:27497386-27497405 | None:intergenic | 35.0% | |
| TATAAACTCACACACACAAG+TGG | - | chr7_3:27497540-27497559 | Msa1099170:intron | 35.0% | |
| GCACTACTATTTGCATGTTA+AGG | - | chr7_3:27497711-27497730 | Msa1099170:intron | 35.0% | |
| ATTTGCATGTTAAGGTCCTA+TGG | - | chr7_3:27497719-27497738 | Msa1099170:intron | 35.0% | |
| TGTTAAGGTCCTATGGAATA+TGG | - | chr7_3:27497726-27497745 | Msa1099170:intron | 35.0% | |
| ! | ATTGAAAAAGTACGACAAGG+AGG | + | chr7_3:27497797-27497816 | None:intergenic | 35.0% |
| CTTCATAGACTCGTGAATAA+TGG | - | chr7_3:27497904-27497923 | Msa1099170:CDS | 35.0% | |
| TGAATGTTGAATTGTGCAGA+TGG | - | chr7_3:27497986-27498005 | Msa1099170:CDS | 35.0% | |
| ATAAAGGGTCTGTCGAAATA+TGG | + | chr7_3:27498225-27498244 | None:intergenic | 35.0% | |
| ! | TTATGAAACTTGGGGGTTTT+GGG | + | chr7_3:27498392-27498411 | None:intergenic | 35.0% |
| TGACCTTCTTATGAAACTTG+GGG | + | chr7_3:27498400-27498419 | None:intergenic | 35.0% | |
| CTTGACCTTCTTATGAAACT+TGG | + | chr7_3:27498402-27498421 | None:intergenic | 35.0% | |
| TGACCTTCTTATGAAACTTG+GGG | + | chr7_3:27498400-27498419 | None:intergenic | 35.0% | |
| CTTGACCTTCTTATGAAACT+TGG | + | chr7_3:27498402-27498421 | None:intergenic | 35.0% | |
| !! | GAACAAGAAGGAGGAGTATT+AGG | + | chr7_3:27494527-27494546 | None:intergenic | 40.0% |
| ! | TTTTTCACGGAACAAGAAGG+AGG | + | chr7_3:27494536-27494555 | None:intergenic | 40.0% |
| GAGAATTGGGATTAGGGTTA+GGG | + | chr7_3:27494583-27494602 | None:intergenic | 40.0% | |
| GTTTGAGGAGAATTGGGATT+AGG | + | chr7_3:27494590-27494609 | None:intergenic | 40.0% | |
| CGAAGGAAATTCGTTGTTGT+GGG | - | chr7_3:27494620-27494639 | Msa1099170:CDS | 40.0% | |
| GAAGGAAATTCGTTGTTGTG+GGG | - | chr7_3:27494621-27494640 | Msa1099170:CDS | 40.0% | |
| GAAACAGAAGGAAGATGTGA+AGG | - | chr7_3:27494649-27494668 | Msa1099170:CDS | 40.0% | |
| AGAAGGAAGATGTGAAGGAA+GGG | - | chr7_3:27494654-27494673 | Msa1099170:CDS | 40.0% | |
| CAATTCAAAACACTCGAACC+CGG | + | chr7_3:27494701-27494720 | None:intergenic | 40.0% | |
| AGAGAAGTAGAGAGAGATTG+AGG | - | chr7_3:27494915-27494934 | Msa1099170:intron | 40.0% | |
| GAGAAGTAGAGAGAGATTGA+GGG | - | chr7_3:27494916-27494935 | Msa1099170:intron | 40.0% | |
| AGTGTTACACAAATTGGGTC+AGG | - | chr7_3:27494953-27494972 | Msa1099170:intron | 40.0% | |
| GTGTTACACAAATTGGGTCA+GGG | - | chr7_3:27494954-27494973 | Msa1099170:intron | 40.0% | |
| GAAGGTTCAGAGTTTGGTTA+AGG | - | chr7_3:27494976-27494995 | Msa1099170:intron | 40.0% | |
| CCATCTTCATCCTCATTCTT+AGG | + | chr7_3:27495025-27495044 | None:intergenic | 40.0% | |
| CCTAAGAATGAGGATGAAGA+TGG | - | chr7_3:27495022-27495041 | Msa1099170:CDS | 40.0% | |
| TGAGGATGAAGATGGAAAAG+AGG | - | chr7_3:27495030-27495049 | Msa1099170:CDS | 40.0% | |
| TGAAGATGGAAAAGAGGAGA+AGG | - | chr7_3:27495036-27495055 | Msa1099170:CDS | 40.0% | |
| ! | GTGCTTCTGTTTCTTCTTCT+TGG | - | chr7_3:27495146-27495165 | Msa1099170:intron | 40.0% |
| ! | TCTGTTTCTTCTTCTTGGGA+TGG | - | chr7_3:27495151-27495170 | Msa1099170:intron | 40.0% |
| CCAGAACACTAGAGATTAAC+CGG | + | chr7_3:27495197-27495216 | None:intergenic | 40.0% | |
| ATGCGTCAGTCTCTTCTAAT+AGG | - | chr7_3:27495353-27495372 | Msa1099170:intron | 40.0% | |
| TGCGTCAGTCTCTTCTAATA+GGG | - | chr7_3:27495354-27495373 | Msa1099170:intron | 40.0% | |
| TCTAATAGGGATAGCTACTG+TGG | - | chr7_3:27495367-27495386 | Msa1099170:intron | 40.0% | |
| !!! | CTTTTTTCAAGGGGGCTATT+TGG | - | chr7_3:27495836-27495855 | Msa1099170:intron | 40.0% |
| GTCAAACTGCATCTTGTACA+AGG | + | chr7_3:27496292-27496311 | None:intergenic | 40.0% | |
| AATCGCAGCTTGACATCTAA+AGG | - | chr7_3:27496713-27496732 | Msa1099170:intron | 40.0% | |
| ATCGCAGCTTGACATCTAAA+GGG | - | chr7_3:27496714-27496733 | Msa1099170:intron | 40.0% | |
| AATCAACAACCACCACTCTT+GGG | - | chr7_3:27496856-27496875 | Msa1099170:intron | 40.0% | |
| ACATCAGTTCGAAGCTTGAA+AGG | + | chr7_3:27496930-27496949 | None:intergenic | 40.0% | |
| GTTTACCCGAAGACTTTGTT+TGG | - | chr7_3:27497054-27497073 | Msa1099170:intron | 40.0% | |
| GGTGCTAATGTTACAGTGTT+TGG | - | chr7_3:27497355-27497374 | Msa1099170:intron | 40.0% | |
| TGAAGCTTCATACTGATGTG+CGG | - | chr7_3:27497417-27497436 | Msa1099170:intron | 40.0% | |
| AAATGCCGAAATTGTTAGGC+CGG | + | chr7_3:27497598-27497617 | None:intergenic | 40.0% | |
| GGCAAAATGCCGAAATTGTT+AGG | + | chr7_3:27497602-27497621 | None:intergenic | 40.0% | |
| TCACTAATTCGCCATGTTTC+TGG | - | chr7_3:27498092-27498111 | Msa1099170:CDS | 40.0% | |
| CACTAATTCGCCATGTTTCT+GGG | - | chr7_3:27498093-27498112 | Msa1099170:CDS | 40.0% | |
| TGAAAGGAAACCCAGAAACA+TGG | + | chr7_3:27498106-27498125 | None:intergenic | 40.0% | |
| TCTTCTTCAGCCAACTTTAG+TGG | + | chr7_3:27498153-27498172 | None:intergenic | 40.0% | |
| ! | TATGGCATAGGTTGTGCTTT+TGG | + | chr7_3:27498207-27498226 | None:intergenic | 40.0% |
| ! | CTTATGAAACTTGGGGGTTT+TGG | + | chr7_3:27498393-27498412 | None:intergenic | 40.0% |
| AACCCCCAAGTTTCATAAGA+AGG | - | chr7_3:27498394-27498413 | Msa1099170:CDS | 40.0% | |
| GACCTTCTTATGAAACTTGG+GGG | + | chr7_3:27498399-27498418 | None:intergenic | 40.0% | |
| ! | CTTATGAAACTTGGGGGTTT+TGG | + | chr7_3:27498393-27498412 | None:intergenic | 40.0% |
| AACCCCCAAGTTTCATAAGA+AGG | - | chr7_3:27498394-27498413 | Msa1099170:CDS | 40.0% | |
| GACCTTCTTATGAAACTTGG+GGG | + | chr7_3:27498399-27498418 | None:intergenic | 40.0% | |
| ! | CTTATGAAACTTGGGGGTTT+TGG | + | chr7_3:27498393-27498412 | None:intergenic | 40.0% |
| ! | GAAAGTGGTGGCGATTCAAT+CGG | + | chr7_3:27494404-27494423 | None:intergenic | 45.0% |
| ! | GGGTTAGGGTTAGGGATTTT+AGG | + | chr7_3:27494569-27494588 | None:intergenic | 45.0% |
| TGGGATTAGGGTTAGGGTTA+GGG | + | chr7_3:27494577-27494596 | None:intergenic | 45.0% | |
| TTGGGATTAGGGTTAGGGTT+AGG | + | chr7_3:27494578-27494597 | None:intergenic | 45.0% | |
| GGAGAATTGGGATTAGGGTT+AGG | + | chr7_3:27494584-27494603 | None:intergenic | 45.0% | |
| ! | GAATTTCCTTCGCCGGATTT+TGG | + | chr7_3:27494612-27494631 | None:intergenic | 45.0% |
| CAACAACGAATTTCCTTCGC+CGG | + | chr7_3:27494619-27494638 | None:intergenic | 45.0% | |
| GCGAAGGAAATTCGTTGTTG+TGG | - | chr7_3:27494619-27494638 | Msa1099170:CDS | 45.0% | |
| TGTGGGGAAGAAGAAACAGA+AGG | - | chr7_3:27494637-27494656 | Msa1099170:CDS | 45.0% | |
| CAGAAGGAAGATGTGAAGGA+AGG | - | chr7_3:27494653-27494672 | Msa1099170:CDS | 45.0% | |
| GAAGGAAGATGTGAAGGAAG+GGG | - | chr7_3:27494655-27494674 | Msa1099170:CDS | 45.0% | |
| AAGGAAGATGTGAAGGAAGG+GGG | - | chr7_3:27494656-27494675 | Msa1099170:CDS | 45.0% | |
| AAAAGAGGGTGATGTGGGTT+TGG | - | chr7_3:27494880-27494899 | Msa1099170:CDS | 45.0% | |
| AAAGAGGGTGATGTGGGTTT+GGG | - | chr7_3:27494881-27494900 | Msa1099170:CDS | 45.0% | |
| TAGAGAGAGATTGAGGGAAG+AGG | - | chr7_3:27494922-27494941 | Msa1099170:intron | 45.0% | |
| TACACAAATTGGGTCAGGGA+AGG | - | chr7_3:27494958-27494977 | Msa1099170:intron | 45.0% | |
| !! | TGGTTCGTCGTTTTGTGCTT+CGG | - | chr7_3:27495084-27495103 | Msa1099170:intron | 45.0% |
| ! | GAAGAAGAAACAGAAGCACG+CGG | + | chr7_3:27495145-27495164 | None:intergenic | 45.0% |
| TCTCGTGGAAGGTTTGATTC+CGG | - | chr7_3:27495175-27495194 | Msa1099170:intron | 45.0% | |
| CCGGTTAATCTCTAGTGTTC+TGG | - | chr7_3:27495194-27495213 | Msa1099170:intron | 45.0% | |
| TTAGAAGAGACTGACGCATG+TGG | + | chr7_3:27495352-27495371 | None:intergenic | 45.0% | |
| ATAGGGATAGCTACTGTGGA+AGG | - | chr7_3:27495371-27495390 | Msa1099170:intron | 45.0% | |
| TCGCAGCTTGACATCTAAAG+GGG | - | chr7_3:27496715-27496734 | Msa1099170:intron | 45.0% | |
| GAATCAACAACCACCACTCT+TGG | - | chr7_3:27496855-27496874 | Msa1099170:intron | 45.0% | |
| ATCAACAACCACCACTCTTG+GGG | - | chr7_3:27496857-27496876 | Msa1099170:intron | 45.0% | |
| GCTGAGAAAGAAGCAGCAAA+AGG | - | chr7_3:27496890-27496909 | Msa1099170:intron | 45.0% | |
| GTTCGAAGCTTGAAAGGTTC+TGG | + | chr7_3:27496924-27496943 | None:intergenic | 45.0% | |
| CAAAGGATTCCTGTTGCACA+AGG | - | chr7_3:27497179-27497198 | Msa1099170:intron | 45.0% | |
| TCAGGTTCATCTGTTGTCCA+AGG | + | chr7_3:27497209-27497228 | None:intergenic | 45.0% | |
| TTGGACAACAGATGAACCTG+AGG | - | chr7_3:27497208-27497227 | Msa1099170:intron | 45.0% | |
| ACAGTGTTTGGCAAAACCTC+CGG | - | chr7_3:27497367-27497386 | Msa1099170:intron | 45.0% | |
| GTATGAAGCTTCAGGTCAAC+AGG | + | chr7_3:27497410-27497429 | None:intergenic | 45.0% | |
| GCACATCAGTATGAAGCTTC+AGG | + | chr7_3:27497418-27497437 | None:intergenic | 45.0% | |
| GAAGCTTCATACTGATGTGC+GGG | - | chr7_3:27497418-27497437 | Msa1099170:intron | 45.0% | |
| AAACTCACACACACAAGTGG+AGG | - | chr7_3:27497543-27497562 | Msa1099170:intron | 45.0% | |
| GGAAAAGGAGAGACAACAGA+AGG | - | chr7_3:27498043-27498062 | Msa1099170:CDS | 45.0% | |
| GGTCTGTCGAAATATGGCAT+AGG | + | chr7_3:27498219-27498238 | None:intergenic | 45.0% | |
| AGATCAATCCTCACCTCCTT+GGG | + | chr7_3:27498248-27498267 | None:intergenic | 45.0% | |
| TAGATCAATCCTCACCTCCT+TGG | + | chr7_3:27498249-27498268 | None:intergenic | 45.0% | |
| !!! | AAACTTGGGGGTTTTGGGTA+GGG | + | chr7_3:27498387-27498406 | None:intergenic | 45.0% |
| TATCTGGGGAAGCTTAGTTG+AGG | + | chr7_3:27498481-27498500 | None:intergenic | 45.0% | |
| TATCTGGGGAAGCTTAGTTG+AGG | + | chr7_3:27498481-27498500 | None:intergenic | 45.0% | |
| TGAATCGCCACCACTTTCTC+CGG | - | chr7_3:27494406-27494425 | Msa1099170:three_prime_UTR | 50.0% | |
| ACGATCGAAGACATGTTCGC+CGG | + | chr7_3:27494428-27494447 | None:intergenic | 50.0% | |
| AACATGTCTTCGATCGTCGC+CGG | - | chr7_3:27494431-27494450 | Msa1099170:three_prime_UTR | 50.0% | |
| CTGGATGATCTACAAGCACG+CGG | + | chr7_3:27494467-27494486 | None:intergenic | 50.0% | |
| !!! | CTTCGCCGGATTTTGGTTTG+AGG | + | chr7_3:27494605-27494624 | None:intergenic | 50.0% |
| CTCAAACCAAAATCCGGCGA+AGG | - | chr7_3:27494603-27494622 | Msa1099170:CDS | 50.0% | |
| !! | TGATGGTGGTGATGGTGATC+CGG | - | chr7_3:27494679-27494698 | Msa1099170:CDS | 50.0% |
| GTCAGGGAAGGTTCAGAGTT+TGG | - | chr7_3:27494970-27494989 | Msa1099170:intron | 50.0% | |
| GACGTCTCAGAATCTTGGGT+TGG | - | chr7_3:27495117-27495136 | Msa1099170:intron | 50.0% | |
| TCTTCTTGGGATGGATCTCG+TGG | - | chr7_3:27495160-27495179 | Msa1099170:intron | 50.0% | |
| !! | AGTGAGTGCTGAGTTCAGTG+TGG | - | chr7_3:27495672-27495691 | Msa1099170:CDS | 50.0% |
| CGCAGCTTGACATCTAAAGG+GGG | - | chr7_3:27496716-27496735 | Msa1099170:intron | 50.0% | |
| CTAAAGGGGGTAGAAGTAGC+AGG | - | chr7_3:27496729-27496748 | Msa1099170:intron | 50.0% | |
| TCAACAACCACCACTCTTGG+GGG | - | chr7_3:27496858-27496877 | Msa1099170:intron | 50.0% | |
| AGAAGCAGCAAAAGGTCACC+CGG | - | chr7_3:27496898-27496917 | Msa1099170:intron | 50.0% | |
| ! | AAGCTTGAAAGGTTCTGGCC+GGG | + | chr7_3:27496919-27496938 | None:intergenic | 50.0% |
| ! | GAAGCTTGAAAGGTTCTGGC+CGG | + | chr7_3:27496920-27496939 | None:intergenic | 50.0% |
| CAAGGAAGACCTTGTGCAAC+AGG | + | chr7_3:27497191-27497210 | None:intergenic | 50.0% | |
| CTGTTGCACAAGGTCTTCCT+TGG | - | chr7_3:27497189-27497208 | Msa1099170:intron | 50.0% | |
| TAGCAAAACGGTCTCACCTC+AGG | + | chr7_3:27497227-27497246 | None:intergenic | 50.0% | |
| AGGCACCTGCTCATCAAACT+CGG | + | chr7_3:27497456-27497475 | None:intergenic | 50.0% | |
| ! | ACACACACAAGTGGAGGTAC+CGG | - | chr7_3:27497549-27497568 | Msa1099170:intron | 50.0% |
| GGCATCCGGCCTAACAATTT+CGG | - | chr7_3:27497590-27497609 | Msa1099170:intron | 50.0% | |
| ! | GGCATTTTGCCAGTTGAGCT+AGG | - | chr7_3:27497611-27497630 | Msa1099170:intron | 50.0% |
| TCCAGAAGTCCTAGCTCAAC+TGG | + | chr7_3:27497623-27497642 | None:intergenic | 50.0% | |
| TCGACAGACCCTTTATCCCA+AGG | - | chr7_3:27498229-27498248 | Msa1099170:CDS | 50.0% | |
| ACAGACCCTTTATCCCAAGG+AGG | - | chr7_3:27498232-27498251 | Msa1099170:CDS | 50.0% | |
| CCTCACCTCCTTGGGATAAA+GGG | + | chr7_3:27498240-27498259 | None:intergenic | 50.0% | |
| TCCTCACCTCCTTGGGATAA+AGG | + | chr7_3:27498241-27498260 | None:intergenic | 50.0% | |
| !!! | GAAACTTGGGGGTTTTGGGT+AGG | + | chr7_3:27498388-27498407 | None:intergenic | 50.0% |
| ! | AGTTGAGGCAGGAGGAGTTT+TGG | + | chr7_3:27498466-27498485 | None:intergenic | 50.0% |
| ! | AGTTGAGGCAGGAGGAGTTT+TGG | + | chr7_3:27498466-27498485 | None:intergenic | 50.0% |
| ATGTTCGCCGGAGAAAGTGG+TGG | + | chr7_3:27494416-27494435 | None:intergenic | 55.0% | |
| GACATGTTCGCCGGAGAAAG+TGG | + | chr7_3:27494419-27494438 | None:intergenic | 55.0% | |
| TGATCTACAAGCACGCGGTG+TGG | + | chr7_3:27494462-27494481 | None:intergenic | 55.0% | |
| GATGTGAAGGAAGGGGGTGA+TGG | - | chr7_3:27494662-27494681 | Msa1099170:CDS | 55.0% | |
| !! | GATGGTGGTGATGGTGATCC+GGG | - | chr7_3:27494680-27494699 | Msa1099170:CDS | 55.0% |
| CTTGGGATGGATCTCGTGGA+AGG | - | chr7_3:27495164-27495183 | Msa1099170:intron | 55.0% | |
| !! | GAGTGCTGAGTTCAGTGTGG+TGG | - | chr7_3:27495675-27495694 | Msa1099170:CDS | 55.0% |
| TCATACTGATGTGCGGGCAC+TGG | - | chr7_3:27497424-27497443 | Msa1099170:intron | 55.0% | |
| CCTGCTCATCAAACTCGGCA+CGG | + | chr7_3:27497451-27497470 | None:intergenic | 55.0% | |
| !! | CACACACAAGTGGAGGTACC+GGG | - | chr7_3:27497550-27497569 | Msa1099170:intron | 55.0% |
| !! | ACACACAAGTGGAGGTACCG+GGG | - | chr7_3:27497551-27497570 | Msa1099170:intron | 55.0% |
| GCCAGTTGAGCTAGGACTTC+TGG | - | chr7_3:27497619-27497638 | Msa1099170:intron | 55.0% | |
| CCCTTTATCCCAAGGAGGTG+AGG | - | chr7_3:27498237-27498256 | Msa1099170:CDS | 55.0% | |
| !!! | TTGGGGGTTTTGGGTAGGGT+AGG | + | chr7_3:27498383-27498402 | None:intergenic | 55.0% |
| GGAAGCTTAGTTGAGGCAGG+AGG | + | chr7_3:27498474-27498493 | None:intergenic | 55.0% | |
| TGGGGAAGCTTAGTTGAGGC+AGG | + | chr7_3:27498477-27498496 | None:intergenic | 55.0% | |
| GGAAGCTTAGTTGAGGCAGG+AGG | + | chr7_3:27498474-27498493 | None:intergenic | 55.0% | |
| TGGGGAAGCTTAGTTGAGGC+AGG | + | chr7_3:27498477-27498496 | None:intergenic | 55.0% | |
| AGCACGCGGTGTGGTTGTTC+CGG | + | chr7_3:27494453-27494472 | None:intergenic | 60.0% | |
| ! | GTGAAGGAAGGGGGTGATGG+TGG | - | chr7_3:27494665-27494684 | Msa1099170:CDS | 60.0% |
| !! | GAAGGGGGTGATGGTGGTGA+TGG | - | chr7_3:27494671-27494690 | Msa1099170:CDS | 60.0% |
| ACAACCACCACTCTTGGGGG+AGG | - | chr7_3:27496861-27496880 | Msa1099170:intron | 60.0% | |
| CAACCACCACTCTTGGGGGA+GGG | - | chr7_3:27496862-27496881 | Msa1099170:intron | 60.0% | |
| CCGTGCCGAGTTTGATGAGC+AGG | - | chr7_3:27497448-27497467 | Msa1099170:intron | 60.0% | |
| TTAGGCCGGATGCCATGACC+GGG | + | chr7_3:27497584-27497603 | None:intergenic | 60.0% | |
| GTTAGGCCGGATGCCATGAC+CGG | + | chr7_3:27497585-27497604 | None:intergenic | 60.0% | |
| GCAGCAGCAGCTCATCGACA+TGG | - | chr7_3:27498429-27498448 | Msa1099170:CDS | 60.0% | |
| GCAGCAGCAGCTCATCGACA+TGG | - | chr7_3:27498429-27498448 | Msa1099170:CDS | 60.0% | |
| TCTCCCTCCCCCAAGAGTGG+TGG | + | chr7_3:27496868-27496887 | None:intergenic | 65.0% | |
| CCTTCTCCCTCCCCCAAGAG+TGG | + | chr7_3:27496871-27496890 | None:intergenic | 65.0% | |
| CCACTCTTGGGGGAGGGAGA+AGG | - | chr7_3:27496868-27496887 | Msa1099170:intron | 65.0% | |
| !! | AGGTACCGGGGTTCGAACCC+CGG | - | chr7_3:27497563-27497582 | Msa1099170:intron | 65.0% |
| CATGACCGGGGTTCGAACCC+CGG | + | chr7_3:27497571-27497590 | None:intergenic | 65.0% | |
| CGAACCCCGGTCATGGCATC+CGG | - | chr7_3:27497576-27497595 | Msa1099170:intron | 65.0% | |
| TAGGCCGGATGCCATGACCG+GGG | + | chr7_3:27497583-27497602 | None:intergenic | 65.0% | |
| CGGGGTTCGAACCCCGGTCA+TGG | - | chr7_3:27497569-27497588 | Msa1099170:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 27494288 | 27498790 | 27494288 | ID=Msa1099170;Name=Msa1099170 |
| chr7_3 | mRNA | 27494288 | 27498790 | 27494288 | ID=Msa1099170-mRNA-1;Parent=Msa1099170;Name=Msa1099170-mRNA-1;_AED=0.15;_eAED=0.15;_QI=146|1|1|1|1|1|8|303|460 |
| chr7_3 | exon | 27494288 | 27494711 | 27494288 | ID=Msa1099170-mRNA-1:exon:5832;Parent=Msa1099170-mRNA-1 |
| chr7_3 | exon | 27494825 | 27494919 | 27494825 | ID=Msa1099170-mRNA-1:exon:5831;Parent=Msa1099170-mRNA-1 |
| chr7_3 | exon | 27495014 | 27495073 | 27495014 | ID=Msa1099170-mRNA-1:exon:5830;Parent=Msa1099170-mRNA-1 |
| chr7_3 | exon | 27495609 | 27495707 | 27495609 | ID=Msa1099170-mRNA-1:exon:5829;Parent=Msa1099170-mRNA-1 |
| chr7_3 | exon | 27495849 | 27495968 | 27495849 | ID=Msa1099170-mRNA-1:exon:5828;Parent=Msa1099170-mRNA-1 |
| chr7_3 | exon | 27496131 | 27496229 | 27496131 | ID=Msa1099170-mRNA-1:exon:5827;Parent=Msa1099170-mRNA-1 |
| chr7_3 | exon | 27496321 | 27496357 | 27496321 | ID=Msa1099170-mRNA-1:exon:5826;Parent=Msa1099170-mRNA-1 |
| chr7_3 | exon | 27497893 | 27498790 | 27497893 | ID=Msa1099170-mRNA-1:exon:5825;Parent=Msa1099170-mRNA-1 |
| chr7_3 | five_prime_UTR | 27498645 | 27498790 | 27498645 | ID=Msa1099170-mRNA-1:five_prime_utr;Parent=Msa1099170-mRNA-1 |
| chr7_3 | CDS | 27497893 | 27498644 | 27497893 | ID=Msa1099170-mRNA-1:cds;Parent=Msa1099170-mRNA-1 |
| chr7_3 | CDS | 27496321 | 27496357 | 27496321 | ID=Msa1099170-mRNA-1:cds;Parent=Msa1099170-mRNA-1 |
| chr7_3 | CDS | 27496131 | 27496229 | 27496131 | ID=Msa1099170-mRNA-1:cds;Parent=Msa1099170-mRNA-1 |
| chr7_3 | CDS | 27495849 | 27495968 | 27495849 | ID=Msa1099170-mRNA-1:cds;Parent=Msa1099170-mRNA-1 |
| chr7_3 | CDS | 27495609 | 27495707 | 27495609 | ID=Msa1099170-mRNA-1:cds;Parent=Msa1099170-mRNA-1 |
| chr7_3 | CDS | 27495014 | 27495073 | 27495014 | ID=Msa1099170-mRNA-1:cds;Parent=Msa1099170-mRNA-1 |
| chr7_3 | CDS | 27494825 | 27494919 | 27494825 | ID=Msa1099170-mRNA-1:cds;Parent=Msa1099170-mRNA-1 |
| chr7_3 | CDS | 27494591 | 27494711 | 27494591 | ID=Msa1099170-mRNA-1:cds;Parent=Msa1099170-mRNA-1 |
| chr7_3 | three_prime_UTR | 27494288 | 27494590 | 27494288 | ID=Msa1099170-mRNA-1:three_prime_utr;Parent=Msa1099170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
